RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10302
         (125 letters)



>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
           P-type ATPase.  This model describes the P-type ATPase
           responsible for translocating calcium ions across the
           plasma membrane of eukaryotes , out of the cell. In some
           organisms, this type of pump may also be found in
           vacuolar membranes. In humans and mice, at least, there
           are multiple isoforms of the PMCA pump with overlapping
           but not redundant functions. Accordingly, there are no
           human diseases linked to PMCA defects, although
           alterations of PMCA function do elicit physiological
           effects. The calcium P-type ATPases have been
           characterized as Type IIB based on a phylogenetic
           analysis which distinguishes this group from the Type
           IIA SERCA calcium pump. A separate analysis divides Type
           IIA into sub-types (SERCA and PMR1) which are modelled
           by TIGR01116 and TIGR01522. This model is well separated
           from those.
          Length = 944

 Score =  113 bits (285), Expect = 2e-30
 Identities = 40/84 (47%), Positives = 51/84 (60%)

Query: 35  EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTL 94
           + GG   I  KL T  NEG+  S + LE R +V+G N +P KP K+FLQ+VW AL D TL
Sbjct: 41  KLGGAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTL 100

Query: 95  IILEIAALVSLGLSFYHPGGESEH 118
           I+L +AA+VSL L    PG     
Sbjct: 101 ILLSVAAVVSLVLGLPEPGEGKAD 124


>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus. 
           Members of this families are involved in Na+/K+, H+/K+,
           Ca++ and Mg++ transport.
          Length = 69

 Score = 70.6 bits (174), Expect = 2e-17
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 36  YGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLI 95
              V E+  +L T   +GL  ++ + E R E +G N +P K  K+  ++     +D  +I
Sbjct: 3   TLSVEEVLARLGTDLEKGL--TEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVI 60

Query: 96  ILEIAALVS 104
           IL IAA+VS
Sbjct: 61  ILLIAAIVS 69


>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
            This entry represents the conserved N-terminal region
           found in several classes of cation-transporting P-type
           ATPases, including those that transport H+, Na+, Ca2+,
           Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange
           P-ATPases, this domain is found in the catalytic alpha
           chain. In gastric H+/K+-ATPases, this domain undergoes
           reversible sequential phosphorylation inducing
           conformational changes that may be important for
           regulating the function of these ATPases.
          Length = 75

 Score = 58.7 bits (143), Expect = 8e-13
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 41  EICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIA 100
           E+ ++L T   +GL  S  +   R E +G N +PP    + L        +  + IL  A
Sbjct: 11  EVLERLQTDLEKGL--SSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNPLIYILLAA 68

Query: 101 ALVSLGL 107
           A++S  L
Sbjct: 69  AVLSALL 75


>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
           metabolism].
          Length = 917

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 2/101 (1%)

Query: 16  RQLRELMEVRGREGIAKINEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPP 75
                                    E+  +L+TSP  GL  S+ +++ R + +G N +P 
Sbjct: 7   NFSVNKSSSTPVTSETWHPLSVERNELLLELFTSPTTGL--SEEEVKRRLKKYGPNELPE 64

Query: 76  KPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPGGES 116
           +  ++ L+      +D  +I+L +AAL+S  +  +   G  
Sbjct: 65  EKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDAGVD 105


>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
           P-type ATPase.  This model describes the P-type ATPase
           responsible for translocating calcium ions across the
           golgi membrane of fungi and animals , and is of
           particular importance in the sarcoplasmic reticulum of
           skeletal and cardiac muscle in vertebrates. The calcium
           P-type ATPases have been characterized as Type IIA based
           on a phylogenetic analysis which distinguishes this
           group from the Type IIB PMCA calcium pump modelled by
           TIGR01517. A separate analysis divides Type IIA into
           sub-types, SERCA and PMR1 the former of which is
           modelled by TIGR01116.
          Length = 884

 Score = 34.4 bits (79), Expect = 0.008
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 39  VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
           V E C KL T    GL  SQ +  HRR   G N    +  ++  +          LI+L 
Sbjct: 9   VEETCSKLQTDLQNGLNSSQ-EASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLL 67

Query: 99  IAALV 103
           IA+ V
Sbjct: 68  IASAV 72


>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
           (type V).  These P-type ATPases form a distinct clade
           but the substrate of their pumping activity has yet to
           be determined. This clade has been designated type V in.
          Length = 1054

 Score = 31.2 bits (71), Expect = 0.13
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 48  TSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWE 87
           T      G +  D+  R+  +G N I   P  +FL+L+ E
Sbjct: 132 TCAGHSNGLTTGDIAQRKAKYGKNEI-EIPVPSFLELLKE 170


>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase.  The
           Escherichia coli YbbB protein was shown to encode a
           selenophosphate-dependent tRNA 2-selenouridine synthase,
           essential for modification of some tRNAs to replace a
           sulfur atom with selenium. This enzyme works with SelD,
           the selenium donor protein, which also acts in
           selenocysteine incorporation. Although the members of
           this protein family show a fairly deep split, sequences
           from both sides of the split are supported by
           co-occurence with, and often proximity to, the selD gene
           [Protein synthesis, tRNA and rRNA base modification].
          Length = 311

 Score = 30.3 bits (69), Expect = 0.20
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)

Query: 60  DLE----HRREVFGSNIIPPKPS-KTFLQLVWEALQ 90
           DLE    HR   FG+  + P+PS K F   + EAL+
Sbjct: 156 DLEGLANHRGSSFGALGLGPQPSQKRFENALAEALR 191


>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
           This model describes the magnesium translocating P-type
           ATPase found in a limited number of bacterial species
           and best described in Salmonella typhimurium, which
           contains two isoforms. These transporters are active in
           low external Mg2+ concentrations and pump the ion into
           the cytoplasm. The magnesium ATPases have been
           classified as type IIIB by a phylogenetic analysis
           [Transport and binding proteins, Cations and iron
           carrying compounds].
          Length = 867

 Score = 30.6 bits (69), Expect = 0.21
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 41  EICKKLYTSPNEGL---------GGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQD 91
               K      E L         G +  ++  R   FG N    +     L+L+  A  +
Sbjct: 10  NNLLKESQMGKETLLRKLGVHETGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNN 69

Query: 92  VTLIILEIAALVS 104
             + IL +   VS
Sbjct: 70  PFIYILAMLMGVS 82


>gnl|CDD|220508 pfam09992, DUF2233, Predicted periplasmic protein (DUF2233).  This
           domain, found in various hypothetical bacterial
           proteins, has no known function.
          Length = 166

 Score = 28.0 bits (63), Expect = 1.1
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)

Query: 1   MATIDGRPTQYGITLRQLRELMEVRG 26
           +  +DGR  Q G+TL +L +L++  G
Sbjct: 104 LVVVDGR--QIGLTLDELADLLKRLG 127


>gnl|CDD|163177 TIGR03183, DNA_S_dndC, putative sulfurtransferase DndC.  Members
          of this protein family are the DndC protein from the
          dnd (degradation during electrophoresis) operon. The
          dnd phenotype reflects a sulfur-containing modification
          to DNA. This operon is sparsely and sporadically
          distributed among bactera; among the first eight
          examples are members from the Actinobacteria,
          Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is
          suggested to be a sulfurtransferase [DNA metabolism,
          Restriction/modification].
          Length = 447

 Score = 27.8 bits (62), Expect = 1.6
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 7/36 (19%)

Query: 62 EHRREVFGSNIIP-------PKPSKTFLQLVWEALQ 90
          E  +E++ S+ IP        K S   LQL+W AL 
Sbjct: 3  EEIQELYLSDDIPWVVGYSGGKDSTAVLQLIWNALA 38


>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family.  The model when
           searched with a partial length search brings in proteins
           with a dinucleotide-binding motif (Rossman fold) over
           the initial 40 residues of the model, including
           oxidoreductases and dehydrogenases. Partially
           characterized members include an FAD-binding protein
           from Bacillus cereus and flavoprotein HI0933 from
           Haemophilus influenzae [Unknown function, Enzymes of
           unknown specificity].
          Length = 400

 Score = 27.6 bits (62), Expect = 1.7
 Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 68  FGSNIIPPKPSKTFLQLVWEALQDVTLIILE-IAALVSLGLSFYHPGGE 115
            G  I+PP P+   L L    L++++ I L+ +   +  G       G+
Sbjct: 177 LGHTIVPPVPALVPLTLDESFLKELSGISLDGVVLSLVNGKKVLEEFGD 225


>gnl|CDD|238879 cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _like subfamily of
           SGNH_hydrolases, a diverse family of lipases and
           esterases. The tertiary fold of the enzyme is
           substantially different from that of the alpha/beta
           hydrolase family and unique among all known hydrolases;
           its active site closely resembles two of the three
           components of typical Ser-His-Asp(Glu) triad from other
           serine hydrolases. E. coli NnaC appears to be involved
           in polysaccharide synthesis.
          Length = 174

 Score = 27.3 bits (61), Expect = 2.0
 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 10/60 (16%)

Query: 54  LGGSQTDLEHRREVFGSNIIPPKPSKTFLQL-----VWE-----ALQDVTLIILEIAALV 103
           LG +        E     +I   PSK FL L       E      ++    II +I    
Sbjct: 29  LGIAGISSRQYLEHIEPQLIQKNPSKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEF 88


>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
           ATPase, fungal-type.  Initially described as a calcium
           efflux ATPase , more recent work has shown that the S.
           pombe CTA3 gene is in fact a potassium ion efflux pump.
           This model describes the clade of fungal P-type ATPases
           responsible for potassium and sodium efflux. The degree
           to which these pumps show preference for sodium or
           potassium varies. This group of ATPases has been
           classified by phylogentic analysis as type IID. The
           Leishmania sequence (GP|3192903), which falls between
           trusted and noise in this model, may very well turn out
           to be an active potassium pump.
          Length = 1053

 Score = 27.3 bits (60), Expect = 2.8
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 46  LYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSL 105
           + TS  EGL  +  + +HR +  G N +          ++   + +   ++L IAA +S 
Sbjct: 19  IGTSIPEGL--THDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISF 76

Query: 106 GLSFYHPGG 114
            +  +  GG
Sbjct: 77  AMHDWIEGG 85


>gnl|CDD|176886 cd08877, START_2, Uncharacterized subgroup of the steroidogenic
           acute regulatory protein (StAR)-related lipid transfer
           (START) domain family.  Functionally uncharacterized
           subgroup of the START domain family. The START domain
           family belongs to the SRPBCC
           (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
           superfamily of proteins that bind hydrophobic ligands.
           SRPBCC domains have a deep hydrophobic ligand-binding
           pocket. For some mammalian members of the START family
           (STARDs), it is known which lipids bind in this pocket;
           these include cholesterol (STARD1, -3, -4, and -5),
           25-hydroxycholesterol (STARD5), phosphatidylcholine
           (STARD2, -7, and -10), phosphatidylethanolamine
           (STARD10) and ceramides (STARD11). Mammalian STARDs
           participate in the control of various cellular
           processes, including lipid trafficking between
           intracellular compartments, lipid metabolism, and
           modulation of signaling events. Mutation or altered
           expression of STARDs is linked to diseases such as
           cancer, genetic disorders, and autoimmune disease.
          Length = 215

 Score = 26.1 bits (58), Expect = 4.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 66  EVFGSNIIPPKPSKTFLQLVWE 87
           + +G  I P  P+K +L+ V  
Sbjct: 159 KYYGFVITPISPTKCYLRFVAN 180


>gnl|CDD|178511 PLN02923, PLN02923, xylose isomerase.
          Length = 478

 Score = 26.4 bits (58), Expect = 5.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 25  RGREGIAKINEYGGVPEICKKLYTSPNEGLGGS 57
           RG    AK+ E G +PE+ +K Y S +  LG  
Sbjct: 407 RGLRNAAKLLEEGSLPELVRKRYASFDSELGAQ 439


>gnl|CDD|235877 PRK06850, PRK06850, hypothetical protein; Provisional.
          Length = 507

 Score = 26.1 bits (58), Expect = 6.2
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 7/37 (18%)

Query: 61 LEHRREVFGSNIIP-------PKPSKTFLQLVWEALQ 90
          +E  +E++ ++  P        K S   LQLVW AL 
Sbjct: 23 IEEIQELYCADNRPWVIGYSGGKDSTAVLQLVWNALA 59


>gnl|CDD|224925 COG2014, COG2014, Uncharacterized conserved protein [Function
           unknown].
          Length = 250

 Score = 25.9 bits (57), Expect = 6.2
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 9   TQYGITLRQLRE---LMEVRGREGIAKINEYGGVPEICKKL 46
           +QY I L +      L  ++  + I  I E+G +P + + L
Sbjct: 92  SQYYIDLEEANWFDILDLIQRDDKIKMIAEFGNMPPVVRTL 132


>gnl|CDD|215612 PLN03169, PLN03169, chalcone synthase family protein; Provisional.
          Length = 391

 Score = 25.8 bits (57), Expect = 6.4
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 10/44 (22%)

Query: 3   TIDGRPTQYGITLRQLRELMEVRGREGIAKINEYGGVPEICKKL 46
           TIDGR T+ GI  +  REL +        KI +   +   CKKL
Sbjct: 257 TIDGRLTEEGINFKLGRELPQ--------KIED--NIEGFCKKL 290


>gnl|CDD|132795 cd06885, PX_SNX17_31, The phosphoinositide binding Phox Homology
          domain of Sorting Nexins 17 and 31.  The PX domain is a
          phosphoinositide (PI) binding module present in many
          proteins with diverse functions. Members of this
          subfamily include sorting nexin 17 (SNX17), SNX31, and
          similar proteins. They contain an N-terminal PX domain
          followed by a truncated FERM (4.1, ezrin, radixin, and
          moesin) domain and a unique C-terminal region. SNXs
          make up the largest group among PX domain containing
          proteins. They are involved in regulating membrane
          traffic and protein sorting in the endosomal system.
          The PX domain of SNXs binds PIs and targets the protein
          to PI-enriched membranes. SNXs differ from each other
          in PI-binding specificity and affinity, and the
          presence of other protein-protein interaction domains,
          which help determine subcellular localization and
          specific function in the endocytic pathway. SNX17 is
          known to regulate the trafficking and processing of a
          number of proteins. It binds some members of the
          low-density lipoprotein receptor (LDLR) family such as
          LDLR, VLDLR, ApoER2, and others, regulating their
          endocytosis. It also binds P-selectin and may regulate
          its lysosomal degradation. SNX17 is highly expressed in
          neurons. It binds amyloid precursor protein (APP) and
          may be involved in its intracellular trafficking and
          processing to amyloid beta peptide, which plays a
          central role in the pathogenesis of Alzheimer's
          disease. The biological function of SNX31 is unknown.
          Length = 104

 Score = 25.0 bits (55), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 62 EHRREVFGSNIIPPKPSKTFLQL 84
          E  ++ FG+  +PP P K  L L
Sbjct: 43 EQLKKEFGNRKLPPFPPKKLLPL 65


>gnl|CDD|117700 pfam09145, Ubiq-assoc, Ubiquitin-associated.  Ubiquitin associated
           domains contain approximately 40 residues and bind
           ubiquitin noncovalently. They adopt a secondary
           structure consisting of three alpha-helices, and have
           been identified in various modular proteins involved in
           protein trafficking, clathrin assembly/disassembly, DNA
           repair, proteasomal degradation, and cell cycle
           regulation.
          Length = 43

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 6/27 (22%)

Query: 97  LEIAALVSLGLS------FYHPGGESE 117
           +E+A L+SLGLS      +Y  G   E
Sbjct: 8   MELAKLMSLGLSIDKANDYYERGITYE 34


>gnl|CDD|113218 pfam04439, Adenyl_transf, Streptomycin adenylyltransferase.  Also
           known as Aminoglycoside 6- adenylyltransferase
           (EC:2.7.7.-), this protein confers resistance to
           aminoglycoside antibiotics.
          Length = 282

 Score = 25.5 bits (56), Expect = 8.6
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 82  LQLVWEALQDVTLIILEIAALVSLGLSFYHPGGESEHDNEETKY 125
            + +W++L     +  E +  VS  L + +P    E+D   TKY
Sbjct: 236 YEEIWQSLFLCCDLFREYSKEVSEKLEYKYP----EYDENITKY 275


>gnl|CDD|222529 pfam14081, DUF4262, Domain of unknown function (DUF4262).  This
           family of proteins is functionally uncharacterized. This
           family of proteins is found in bacteria and viruses.
           Proteins in this family are typically between 147 and
           227 amino acids in length. An uncharacterized member
           from Mycobacterium tuberculosis is incorrectly annotated
           as the KatG protein.
          Length = 123

 Score = 25.1 bits (55), Expect = 8.8
 Identities = 12/27 (44%), Positives = 12/27 (44%)

Query: 60  DLEHRREVFGSNIIPPKPSKTFLQLVW 86
           D EH  E  GS      P    LQLVW
Sbjct: 83  DREHYEEYLGSANWFYGPPFPVLQLVW 109


>gnl|CDD|219750 pfam08217, DUF1712, Fungal domain of unknown function (DUF1712).
           The function of this family of proteins is unknown.
          Length = 466

 Score = 25.4 bits (56), Expect = 8.9
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 76  KPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYH 111
              K +  L + A   +TL + + A        +  
Sbjct: 290 DEQKYYNLLFYYAKDVLTLCLFDPAFDKINEQDYLK 325


>gnl|CDD|237861 PRK14947, PRK14947, DNA polymerase III subunit beta; Provisional.
          Length = 384

 Score = 25.4 bits (56), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 70 SNIIPPKPSKTFLQLVWEALQDVTLIIL 97
          +NIIP K    +L+ +W   +D TL I+
Sbjct: 18 ANIIPAKTGAAYLRTIWLKAEDGTLSIM 45


>gnl|CDD|239578 cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase
           (SQR)-like Type B subfamily 2, transmembrane subunit;
           composed of proteins with similarity to the SQRs of
           Geobacter metallireducens and Corynebacterium
           glutamicum. SQR catalyzes the oxidation of succinate to
           fumarate coupled to the reduction of quinone to quinol.
           C. glutamicum SQR reduces low potential quinones such as
           menaquinone. SQR is also called succinate dehydrogenase
           (Sdh) or Complex II and is part of the citric acid cycle
           and the aerobic respiratory chain. SQR is composed of a
           flavoprotein catalytic subunit, an iron-sulfur protein
           and one or two hydrophobic transmembrane subunits.
           Members of this subfamily are classified as Type B as
           they contain one transmembrane subunit and two heme
           groups. The heme and quinone binding sites reside in the
           transmembrane subunit. The transmembrane subunit of
           members of this subfamily is also called Sdh cytochrome
           b558 subunit based on the Bacillus subtilis protein. The
           structural arrangement allows efficient electron
           transfer between the catalytic subunit, through
           iron-sulfur centers, and the transmembrane subunit
           containing the electron acceptor (quinone). The
           reversible reduction of quinone is an essential feature
           of respiration, allowing transfer of electrons between
           respiratory complexes. Proteins in this subfamily from
           G. metallireducens and G. sulfurreducens are
           bifunctional enzymes with SQR and QFR activities.
          Length = 209

 Score = 25.3 bits (56), Expect = 9.1
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 74  PPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPGGESEH 118
                    +L+  + Q   +  L + A+V+LGL   H G  S  
Sbjct: 126 MGVGRGDVYELLVASFQQPWIAALYVLAMVALGLHLSH-GFWSAF 169


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0789    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,641,511
Number of extensions: 589557
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 33
Length of query: 125
Length of database: 10,937,602
Length adjustment: 85
Effective length of query: 40
Effective length of database: 7,167,512
Effective search space: 286700480
Effective search space used: 286700480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)