RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10302
(125 letters)
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 60.3 bits (147), Expect = 5e-12
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
E S GL + ++ E +G N +P + K+ +LV E +D+ + IL
Sbjct: 10 TEECLAYFGVSETTGL--TPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILL 67
Query: 99 IAALVSLGLSFYHPGGESEHDNEET 123
+AA +S L+++ G E+ E
Sbjct: 68 LAACISFVLAWFEEGEETITAFVEP 92
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 54.2 bits (131), Expect = 6e-10
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
+ E+ K T GL + + G N + P P+ L I+L
Sbjct: 53 LDELHNKYGTDLTRGL--TNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLW 110
Query: 99 IAALVSLGLSFYHPGGESEHDNEE 122
I A++ E E N+
Sbjct: 111 IGAILCFLAYGIQAATEDEPANDN 134
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 54.2 bits (131), Expect = 7e-10
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 41 EICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIA 100
E+ +K TS +GL S + G N + P L ++ +A
Sbjct: 60 ELEQKYQTSATKGL--SASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVA 117
Query: 101 ALVSLGLSFYHPGGESEHDNEE 122
A + L ++
Sbjct: 118 AAICLIAFAIQASEGDLTTDDN 139
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 51.2 bits (123), Expect = 7e-09
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
VPE L T GL + ++ RR +G N + + FL+ ++E
Sbjct: 75 VPE--DMLQTDTRVGL--TSEEVVQRRRKYGLNQMKEEKENHFLKF-LGFFVGPIQFVME 129
Query: 99 IAALVSLGL 107
AA+++ GL
Sbjct: 130 GAAVLAAGL 138
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 49.6 bits (119), Expect = 3e-08
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
+ E+ ++L S EGL + + E R ++FG N + K L+ + + ++E
Sbjct: 19 IEEVFQQLKCSR-EGL--TTQEGEDRIQIFGPNKLEEKKESKLLKF-LGFMWNPLSWVME 74
Query: 99 IAALVSLGL 107
+AA++++ L
Sbjct: 75 MAAIMAIAL 83
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.13
Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 36/130 (27%)
Query: 10 QYGITLRQL-----RELMEVRGREGIAKINE-YGGVPEICKKLYTSPNEGLGGSQTDLEH 63
YG ++ + L G E +I E Y + ++ + +G ++ +
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM------IFETIVDGKLKTEKIFKE 1709
Query: 64 RREVFGSNII-PPKP--SKT-FLQ--------LVWEALQDVTLIIL----------EIAA 101
E S K S T F Q +E L+ LI E AA
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 102 LVSLG--LSF 109
L SL +S
Sbjct: 1770 LASLADVMSI 1779
Score = 30.4 bits (68), Expect = 0.14
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 29/105 (27%)
Query: 8 PTQYGITLRQLRE-----LMEVRGREGIAKINEYGGVPEICKKLYTSPNEGLGGSQTDLE 62
PT QL+E L E EG A +E E+ K LG
Sbjct: 23 PTASFFIASQLQEQFNKILPEP--TEGFAADDEPTTPAELVGKF-------LG------- 66
Query: 63 HRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIIL---EIAALVS 104
+ S+++ P F Q++ L + L +I AL +
Sbjct: 67 -----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics,
rohopseudom palustris, PSI-2, protein structure
initiative; 1.20A {Rhodopseudomonas palustris}
Length = 139
Score = 25.0 bits (55), Expect = 6.8
Identities = 3/23 (13%), Positives = 10/23 (43%)
Query: 73 IPPKPSKTFLQLVWEALQDVTLI 95
+P ++ ++ EA + +
Sbjct: 2 MPQTITRGIKAMLDEANSSIETL 24
>2ikb_A Hypothetical protein NMB1012; structural genomics, PSI-2, MCSG, PR
structure initiative; 1.70A {Neisseria meningitidis}
SCOP: d.2.1.9 PDB: 2is5_A*
Length = 167
Score = 25.0 bits (54), Expect = 7.7
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 6 GRPTQYGITLRQLRELMEVRGREGIAKINEYGGVPEICKKLYTSPNEGLGGSQTDLEHRR 65
G T +GIT R + G G + I +K + Q
Sbjct: 27 GGETNWGITKRTAQAN----GYNGSMRAMTREQAISIYRKAFWER---YRADQMPEAVAF 79
Query: 66 EVFGSNI-IPPKPSKTFLQLVWEALQDVTLIILEIAALVSLG 106
+ F + + + LQ D + + + A+ SL
Sbjct: 80 QFFDACVNHGYGNAARMLQRAAGVPDDGVIGAVSLKAINSLP 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.400
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,988,513
Number of extensions: 110590
Number of successful extensions: 167
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 11
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.5 bits)