RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10302
         (125 letters)



>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase,
           transmembrane domain M {Rabbit (Oryctolagus cuniculus)
           [TaxId: 9986]}
          Length = 472

 Score = 79.3 bits (195), Expect = 4e-19
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 38  GVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIIL 97
              E       S   GL  +   ++   E +G N +P +  K+  +LV E  +D+ + IL
Sbjct: 8   STEECLAYFGVSETTGL--TPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRIL 65

Query: 98  EIAALVSLGLSFYHPGGESEHD 119
            +AA +S  L+++  G E+   
Sbjct: 66  LLAACISFVLAWFEEGEETITA 87


>d1ntha_ c.1.25.1 (A:) Monomethylamine methyltransferase MtmB
           {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 457

 Score = 25.4 bits (55), Expect = 2.3
 Identities = 13/83 (15%), Positives = 34/83 (40%), Gaps = 11/83 (13%)

Query: 12  GITLRQLRELMEVRGREGIAKINE-YGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGS 70
           G+  R + E+        I+++N     +  + +K Y S   G        +  +E +  
Sbjct: 379 GMEARMMGEVARATAGVEISEVNVILDKLVSLYEKNYASAPAG--------KTFQECY-- 428

Query: 71  NIIPPKPSKTFLQLVWEALQDVT 93
           ++    P++ ++Q+   A + + 
Sbjct: 429 DVKTVTPTEEYMQVYDGARKKLE 451


>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 434

 Score = 24.8 bits (52), Expect = 4.2
 Identities = 7/40 (17%), Positives = 15/40 (37%)

Query: 15 LRQLRELMEVRGREGIAKINEYGGVPEICKKLYTSPNEGL 54
           +  R+L+    +  I  I   G +P+    L  +    +
Sbjct: 34 TQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI 73


>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 85

 Score = 23.0 bits (49), Expect = 8.9
 Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 7/41 (17%)

Query: 10 QYGITLRQLRELMEVRGREGIAKINEYGGVPEICKKLYTSP 50
          QY   +++++E  E   R  +          ++   L  S 
Sbjct: 2  QYYRAIKKIKEAAEASNRAYLT-------SSKLADMLGISQ 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.138    0.400 

Gapped
Lambda     K      H
   0.267   0.0579    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,933
Number of extensions: 19665
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 8
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.6 bits)