BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10308
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8SY33|GAWKY_DROME Protein Gawky OS=Drosophila melanogaster GN=gw PE=1 SV=1
Length = 1384
Score = 144 bits (362), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/167 (48%), Positives = 101/167 (60%), Gaps = 36/167 (21%)
Query: 2 SSNDLWGPP----KPRGPPPGMMGGGGKPP-------------SNGWMVRPNGGG----- 39
++++LW P RGPPPG+ K +NGW+ +P GG
Sbjct: 1046 ATSELWTSPLNKSSSRGPPPGLTANSNKSANSNASTPTTITGGANGWL-QPRSGGVQTTN 1104
Query: 40 ----GGGNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLA 95
GG TWG+S W+LLKNLT QIDG TL+TLC+QHGPL +FH YLN +A
Sbjct: 1105 TNWTGGNTTWGSS---------WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIA 1155
Query: 96 LAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSAT 142
L KY+TREEA KAQ LNNC+L NTTIFAE+PS+ EVQS++ HL T
Sbjct: 1156 LCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQSIMQHLPQT 1202
>sp|Q3UHK8|TNR6A_MOUSE Trinucleotide repeat-containing gene 6A protein OS=Mus musculus
GN=Tnrc6a PE=1 SV=1
Length = 1896
Score = 137 bits (346), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/253 (39%), Positives = 139/253 (54%), Gaps = 35/253 (13%)
Query: 3 SNDLWG---PPK----PRGPPPGMMGGGGKPPSNGWMVRP-NGGGGGGNTWGTSQPQGGW 54
+++LW PPK P PPPG+ G KPP + W P GGG GN+ P W
Sbjct: 1649 AHELWKVPLPPKNITAPSRPPPGLTGQ--KPPLSTWDNSPLRVGGGWGNSDARYTPGSSW 1706
Query: 55 SGT-------WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIK 107
+ W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++EE +K
Sbjct: 1707 GESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVK 1766
Query: 108 AQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSATANN-------NNNNNGGTGGWARGS 160
AQ +L+ C+LGNTTI AE S+ E+ A + + ++ + G+ +
Sbjct: 1767 AQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLDCSHSF 1826
Query: 161 SALSNKDTWSSGG-GGGNT-----SQLWGTPSNPSSGGSLWGAPPLDSVDRATPSSLNSF 214
S+ ++ + W+ G G N + LWGTP + SLWG P D ++PS +N+F
Sbjct: 1827 SSRTDVNHWNGAGLSGANCGDLHGTSLWGTPHYST---SLWGPPSSDPRGISSPSPINAF 1883
Query: 215 LPGDLL--GGESM 225
L D L GGESM
Sbjct: 1884 LSVDHLGGGGESM 1896
>sp|Q8NDV7|TNR6A_HUMAN Trinucleotide repeat-containing gene 6A protein OS=Homo sapiens
GN=TNRC6A PE=1 SV=2
Length = 1962
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/255 (40%), Positives = 140/255 (54%), Gaps = 38/255 (14%)
Query: 3 SNDLWG---PPK----PRGPPPGMMGGGGKPPSNGWMVRP-NGGGGGGNTWGTSQPQGGW 54
+++LW PPK P PPPG+ G KPP + W P GGG GN+ P W
Sbjct: 1714 AHELWKVPLPPKNITAPSRPPPGLTGQ--KPPLSTWDNSPLRIGGGWGNSDARYTPGSSW 1771
Query: 55 SGT-------WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIK 107
+ W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++EE +K
Sbjct: 1772 GESSSGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSKEEVVK 1831
Query: 108 AQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSATANN-------NNNNNGGTGGWARGS 160
AQ +L+ C+LGNTTI AE S+ E+ A + + ++ + G+ +
Sbjct: 1832 AQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLDCSHSF 1891
Query: 161 SALSNKDTWSSGGGGGNT------SQLWGTPSNPSSGGSLWGAPPLDSVDR--ATPSSLN 212
S+ ++ + W+ G G + LWGTP + SLWG PP S R ++PS +N
Sbjct: 1892 SSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYST---SLWG-PPSSSDPRGISSPSPIN 1947
Query: 213 SFLPGDLL--GGESM 225
+FL D L GGESM
Sbjct: 1948 AFLSVDHLGGGGESM 1962
>sp|Q3UHC0|TNR6C_MOUSE Trinucleotide repeat-containing gene 6C protein OS=Mus musculus
GN=Tnrc6c PE=1 SV=2
Length = 1690
Score = 134 bits (337), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 128/241 (53%), Gaps = 26/241 (10%)
Query: 3 SNDLWGPPK----PRGPPPGMMGGGGKPPSNGWMVRPNG-GGGGGNTWGTSQPQGGWSGT 57
S++LW P+ P PPPG+ PS+ W P G + S G + +
Sbjct: 1458 SHELWKVPRNTTAPTRPPPGL---ANPKPSSTWGTSPLGWTSSYSSGSAWSTDTSGRTSS 1514
Query: 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCIL 117
W++L+NLTPQIDGSTL+TLC+QHGPL FHL L A+ +YS++EEA KAQ +L+ C+L
Sbjct: 1515 WLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVL 1574
Query: 118 GNTTIFAEAPSDAEVQSLLAHLSATANNNNN------------NNGGTGGWARGSSALSN 165
GNTTI AE + EV LA A ++ +G T G R +A N
Sbjct: 1575 GNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSSSGGSQPRLGTSGSTHGLVRSDTAHWN 1634
Query: 166 KDTWSSGGGGGNTSQLWGTPSNPSSGGSLWGAPPL-DSVDRATPSSLNSFLPGDLLGGES 224
S G G++ LWG P SLWG P D+ +P+ LN+ LPGDLL GES
Sbjct: 1635 TPCLS---GKGSSELLWG--GVPQYSSSLWGPPSAEDARVIGSPTPLNTLLPGDLLSGES 1689
Query: 225 M 225
+
Sbjct: 1690 I 1690
>sp|Q9HCJ0|TNR6C_HUMAN Trinucleotide repeat-containing gene 6C protein OS=Homo sapiens
GN=TNRC6C PE=1 SV=3
Length = 1690
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 129/238 (54%), Gaps = 20/238 (8%)
Query: 3 SNDLWGPPK----PRGPPPGMMGGGGKPPSNGWMVRPNG-GGGGGNTWGTSQPQGGWSGT 57
S++LW P+ P PPPG+ PS+ W P G + S G + +
Sbjct: 1458 SHELWKVPRNSTAPTRPPPGLTN---PKPSSTWGASPLGWTSSYSSGSAWSTDTSGRTSS 1514
Query: 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCIL 117
W++L+NLTPQIDGSTL+TLC+QHGPL FHL L A+ +YS++EEA KAQ +L+ C+L
Sbjct: 1515 WLVLRNLTPQIDGSTLRTLCLQHGPLITFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVL 1574
Query: 118 GNTTIFAEAPSDAEVQSLLAHLSATANNNNNNNGGTGGWARGSSA-------LSNKDTWS 170
GNTTI AE + EV LA A ++ + R S+A S+ W+
Sbjct: 1575 GNTTILAEFAGEEEVNRFLAQGQALPPTSSWQSSSASSQPRLSAAGSSHGLVRSDAGHWN 1634
Query: 171 SG--GGGGNTSQLWGTPSNPSSGGSLWGAPPL-DSVDRATPSSLNSFLPGDLLGGESM 225
+ GG G++ LWG P SLWG P DS +P+ L + LPGDLL GES+
Sbjct: 1635 APCLGGKGSSELLWG--GVPQYSSSLWGPPSADDSRVIGSPTPLTTLLPGDLLSGESL 1690
>sp|Q9UPQ9|TNR6B_HUMAN Trinucleotide repeat-containing gene 6B protein OS=Homo sapiens
GN=TNRC6B PE=1 SV=4
Length = 1833
Score = 110 bits (276), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 60/81 (74%)
Query: 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCIL 117
W++L NLTPQIDGSTL+T+C+QHGPL FHL L AL +YST++EA KAQ L+ C+L
Sbjct: 1649 WLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVL 1708
Query: 118 GNTTIFAEAPSDAEVQSLLAH 138
GNTTI AE +D EV LA
Sbjct: 1709 GNTTILAEFATDDEVSRFLAQ 1729
>sp|Q8BKI2|TNR6B_MOUSE Trinucleotide repeat-containing gene 6B protein OS=Mus musculus
GN=Tnrc6b PE=2 SV=2
Length = 1810
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 60/81 (74%)
Query: 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCIL 117
W++L NLTPQIDGSTL+T+C+QHGPL FHL L AL +YST++EA KAQ L+ C+L
Sbjct: 1626 WLVLHNLTPQIDGSTLRTICMQHGPLLTFHLNLTQGTALIRYSTKQEAAKAQTALHMCVL 1685
Query: 118 GNTTIFAEAPSDAEVQSLLAH 138
GNTTI AE ++ EV LA
Sbjct: 1686 GNTTILAEFATEDEVSRFLAQ 1706
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 61 LKNLTPQIDGSTLKTLCVQHG-PLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILG 118
L N+ P + L+TL G ++ F + +H +AL + +T EEAI+A +L+N LG
Sbjct: 459 LSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLG 517
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 61 LKNLTPQIDGSTLKTLCVQHG-PLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILG 118
L N+ P + L+TL G ++ F + +H +AL + +T EEAI+A +L+N LG
Sbjct: 459 LSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLG 517
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 37.4 bits (85), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 61 LKNLTPQIDGSTLKTLCVQHG-PLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILG 118
L N+ P + L+TL G ++ F + +H +AL + +T EEAI+A +L+N LG
Sbjct: 459 LSNIPPSVAEEDLRTLFANTGGTVKAFKFFQDHKMALLQMATVEEAIQALIDLHNYNLG 517
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 36.2 bits (82), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 20 MGGGGKPPSNGWMVRPNGGGGGGNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQ 79
+G K +R N + SQ G + LKNL +D LK + +
Sbjct: 301 VGRAQKKSEREEELRRKFEQERINRFEKSQ------GANLYLKNLDDSVDDEKLKEMFSE 354
Query: 80 HGPLQNFHLYLN-----HSLALAKYSTREEAIKAQGNLNNCILGNTTIF---AEAPSD-- 129
+G + + + LN YS EEA++A +N ++G ++ A+ D
Sbjct: 355 YGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRR 414
Query: 130 AEVQSLLAHLSA 141
A +Q+L + + A
Sbjct: 415 AHLQALFSQIRA 426
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.131 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,756,345
Number of Sequences: 539616
Number of extensions: 5825681
Number of successful extensions: 61874
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 454
Number of HSP's that attempted gapping in prelim test: 49020
Number of HSP's gapped (non-prelim): 11409
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)