Query psy10308
Match_columns 225
No_of_seqs 98 out of 122
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 23:11:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10308.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10308hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0130|consensus 99.7 6.6E-18 1.4E-22 141.8 5.3 74 54-127 69-149 (170)
2 PF00076 RRM_1: RNA recognitio 99.6 5.9E-15 1.3E-19 100.6 7.5 65 59-123 1-70 (70)
3 PLN03134 glycine-rich RNA-bind 99.6 9.8E-15 2.1E-19 119.1 9.3 74 56-129 34-113 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2E-14 4.3E-19 126.6 10.4 86 56-141 3-115 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2E-14 4.3E-19 126.6 9.4 73 57-129 270-348 (352)
6 KOG4207|consensus 99.5 9.7E-15 2.1E-19 129.4 6.1 74 55-128 12-91 (256)
7 TIGR01659 sex-lethal sex-letha 99.5 1.2E-13 2.7E-18 127.1 10.4 87 55-141 106-219 (346)
8 PF13893 RRM_5: RNA recognitio 99.4 2.4E-13 5.3E-18 92.5 6.7 55 73-127 1-56 (56)
9 smart00362 RRM_2 RNA recogniti 99.4 7.9E-13 1.7E-17 87.5 8.6 67 59-125 2-72 (72)
10 smart00360 RRM RNA recognition 99.4 1.6E-12 3.4E-17 85.5 7.7 65 61-125 1-71 (71)
11 PF14259 RRM_6: RNA recognitio 99.4 9.7E-13 2.1E-17 91.6 6.8 65 59-123 1-70 (70)
12 cd00590 RRM RRM (RNA recogniti 99.4 5.1E-12 1.1E-16 83.9 9.0 68 59-126 2-74 (74)
13 TIGR01628 PABP-1234 polyadenyl 99.4 2.9E-12 6.3E-17 121.4 9.7 77 56-132 285-366 (562)
14 TIGR01659 sex-lethal sex-letha 99.3 3.2E-12 7E-17 117.8 8.6 75 56-130 193-275 (346)
15 TIGR01628 PABP-1234 polyadenyl 99.3 1.4E-11 3E-16 116.8 10.9 70 58-127 2-77 (562)
16 TIGR01622 SF-CC1 splicing fact 99.3 7.8E-12 1.7E-16 114.6 8.6 74 56-129 186-265 (457)
17 TIGR01645 half-pint poly-U bin 99.3 1.5E-11 3.3E-16 121.4 10.3 87 55-141 106-230 (612)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.3 1.2E-11 2.7E-16 114.5 9.1 74 56-129 295-374 (509)
19 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 1.2E-11 2.6E-16 116.7 8.5 78 55-132 274-353 (481)
20 KOG0145|consensus 99.3 5.1E-12 1.1E-16 115.6 5.4 74 57-130 128-209 (360)
21 KOG0122|consensus 99.3 1.1E-11 2.4E-16 111.7 7.3 75 55-129 188-268 (270)
22 TIGR01622 SF-CC1 splicing fact 99.3 3.5E-11 7.6E-16 110.3 10.7 85 56-141 89-212 (457)
23 TIGR01645 half-pint poly-U bin 99.3 1.6E-11 3.4E-16 121.3 8.9 72 57-128 205-282 (612)
24 KOG0148|consensus 99.3 1.1E-11 2.4E-16 113.3 7.2 79 54-132 162-240 (321)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 1.9E-11 4.1E-16 115.3 8.0 76 58-133 4-81 (481)
26 PLN03120 nucleic acid binding 99.2 6.8E-11 1.5E-15 106.7 9.0 74 56-130 4-80 (260)
27 TIGR01648 hnRNP-R-Q heterogene 99.2 6.3E-11 1.4E-15 116.3 9.4 84 56-139 58-162 (578)
28 COG0724 RNA-binding proteins ( 99.2 1.2E-10 2.5E-15 92.2 8.7 73 57-129 116-194 (306)
29 TIGR01648 hnRNP-R-Q heterogene 99.2 6.7E-11 1.5E-15 116.1 8.2 78 57-136 234-313 (578)
30 TIGR01642 U2AF_lg U2 snRNP aux 99.2 1E-10 2.2E-15 108.4 8.7 76 57-132 410-504 (509)
31 KOG0125|consensus 99.1 8.1E-11 1.8E-15 109.7 7.3 73 58-130 98-174 (376)
32 PLN03213 repressor of silencin 99.1 1.8E-10 3.9E-15 112.4 9.5 85 56-140 10-98 (759)
33 KOG0131|consensus 99.1 7.2E-11 1.6E-15 102.9 5.4 71 58-128 11-87 (203)
34 PLN03121 nucleic acid binding 99.1 4E-10 8.7E-15 100.9 9.4 71 58-129 7-80 (243)
35 KOG0107|consensus 99.1 2E-10 4.3E-15 99.6 6.9 73 56-128 10-83 (195)
36 KOG0144|consensus 99.1 1.2E-10 2.7E-15 111.5 5.7 80 56-135 124-214 (510)
37 KOG0114|consensus 99.0 1.1E-09 2.3E-14 89.0 9.0 83 58-140 20-105 (124)
38 smart00361 RRM_1 RNA recogniti 99.0 8.2E-10 1.8E-14 79.0 7.1 56 70-125 2-70 (70)
39 KOG0108|consensus 99.0 6.4E-10 1.4E-14 106.3 8.0 76 57-132 19-100 (435)
40 KOG0111|consensus 99.0 1.9E-10 4.1E-15 103.4 2.7 75 58-132 12-92 (298)
41 KOG0127|consensus 99.0 1.4E-09 3.1E-14 106.8 7.5 76 57-132 117-198 (678)
42 KOG0126|consensus 98.9 1.4E-10 3E-15 101.6 -0.4 72 56-127 35-112 (219)
43 KOG0144|consensus 98.9 1.9E-09 4.1E-14 103.5 7.3 74 55-128 33-115 (510)
44 KOG0105|consensus 98.9 3.1E-09 6.7E-14 93.7 6.5 75 54-128 4-81 (241)
45 KOG0117|consensus 98.9 4.9E-09 1.1E-13 100.9 7.1 76 59-136 262-337 (506)
46 KOG0123|consensus 98.8 1E-08 2.2E-13 95.8 8.2 69 59-128 79-151 (369)
47 KOG0145|consensus 98.8 1.2E-08 2.6E-13 93.7 7.8 74 55-128 276-356 (360)
48 KOG0113|consensus 98.8 1.6E-08 3.4E-13 93.6 8.1 82 57-138 102-189 (335)
49 KOG0148|consensus 98.8 1.2E-08 2.5E-13 93.8 6.0 70 59-128 65-140 (321)
50 KOG0147|consensus 98.7 1.4E-08 3E-13 99.2 4.8 71 59-129 281-357 (549)
51 KOG0117|consensus 98.7 5.7E-08 1.2E-12 93.7 7.6 85 57-141 84-190 (506)
52 KOG0146|consensus 98.6 7.3E-08 1.6E-12 89.0 6.7 72 57-128 20-99 (371)
53 KOG0110|consensus 98.6 3.9E-08 8.4E-13 98.5 4.9 77 56-132 613-695 (725)
54 KOG0121|consensus 98.6 9.5E-08 2.1E-12 80.2 6.4 73 55-127 35-113 (153)
55 KOG0110|consensus 98.5 1.7E-07 3.8E-12 93.9 7.3 70 59-128 518-596 (725)
56 KOG0124|consensus 98.5 8.6E-08 1.9E-12 91.5 4.2 73 55-127 112-190 (544)
57 KOG0131|consensus 98.4 2.8E-07 6.1E-12 80.7 4.3 83 56-138 96-194 (203)
58 KOG0132|consensus 98.3 1.1E-06 2.3E-11 89.4 7.2 83 56-138 421-507 (894)
59 KOG0149|consensus 98.3 1.4E-06 2.9E-11 78.5 6.7 73 55-128 11-89 (247)
60 KOG0124|consensus 98.3 1E-06 2.3E-11 84.2 6.2 69 57-125 211-285 (544)
61 KOG4206|consensus 98.3 1.4E-06 3.1E-11 77.5 6.6 75 58-132 11-93 (221)
62 KOG0109|consensus 98.3 9.4E-07 2E-11 82.0 5.2 73 56-130 2-74 (346)
63 KOG0533|consensus 98.3 2.2E-06 4.7E-11 77.0 7.3 73 56-128 83-160 (243)
64 KOG0153|consensus 98.2 2.2E-06 4.9E-11 80.7 7.0 75 55-129 227-302 (377)
65 KOG0109|consensus 98.2 1.6E-06 3.5E-11 80.5 4.3 72 55-128 77-148 (346)
66 KOG0123|consensus 98.2 2.2E-06 4.7E-11 80.3 4.8 78 55-132 269-351 (369)
67 KOG0127|consensus 98.1 3.4E-06 7.3E-11 83.5 5.5 71 58-128 7-83 (678)
68 KOG0120|consensus 98.1 6.1E-06 1.3E-10 80.6 7.0 62 71-132 424-494 (500)
69 PF08777 RRM_3: RNA binding mo 98.0 2.1E-05 4.5E-10 61.9 7.5 80 59-138 4-88 (105)
70 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.3E-05 2.9E-10 56.0 5.7 52 57-109 2-53 (53)
71 KOG4212|consensus 98.0 1E-05 2.2E-10 78.8 6.7 72 54-127 534-608 (608)
72 KOG1190|consensus 98.0 1.5E-05 3.3E-10 76.8 6.7 77 57-133 298-376 (492)
73 KOG4660|consensus 97.9 6.5E-06 1.4E-10 81.0 3.5 68 56-123 75-143 (549)
74 PF11608 Limkain-b1: Limkain b 97.9 5.9E-05 1.3E-09 59.2 7.4 68 57-128 3-75 (90)
75 KOG4661|consensus 97.9 2E-05 4.4E-10 78.9 5.9 79 55-133 404-488 (940)
76 KOG0120|consensus 97.9 1.1E-05 2.3E-10 78.9 3.7 78 56-133 289-372 (500)
77 KOG1548|consensus 97.8 5E-05 1.1E-09 71.9 6.9 72 55-126 264-348 (382)
78 KOG0146|consensus 97.8 1.4E-05 2.9E-10 74.2 3.1 76 54-129 283-364 (371)
79 KOG4208|consensus 97.8 6.5E-05 1.4E-09 66.7 7.1 83 55-137 48-138 (214)
80 KOG0106|consensus 97.8 2.1E-05 4.5E-10 69.8 4.0 70 58-129 3-72 (216)
81 KOG0147|consensus 97.8 4.8E-05 1E-09 75.0 6.6 79 56-134 443-532 (549)
82 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00015 3.3E-09 57.2 7.4 73 55-129 5-91 (100)
83 KOG0116|consensus 97.7 5.5E-05 1.2E-09 72.6 5.5 66 59-125 291-362 (419)
84 KOG1456|consensus 97.6 6.8E-05 1.5E-09 72.0 5.1 79 59-137 123-206 (494)
85 KOG4454|consensus 97.6 3.1E-05 6.7E-10 70.0 2.4 72 56-128 9-85 (267)
86 KOG4206|consensus 97.6 0.00021 4.6E-09 63.8 7.1 72 57-128 147-220 (221)
87 KOG0415|consensus 97.6 0.00013 2.7E-09 69.9 5.8 73 55-127 238-316 (479)
88 KOG0106|consensus 97.5 7.1E-05 1.5E-09 66.4 2.5 72 55-128 98-169 (216)
89 KOG1548|consensus 97.4 0.0003 6.4E-09 66.7 6.2 72 57-128 135-219 (382)
90 KOG4212|consensus 97.3 0.0012 2.7E-08 64.7 9.8 81 58-138 46-132 (608)
91 KOG0151|consensus 97.3 0.0003 6.4E-09 71.7 5.7 74 54-127 172-254 (877)
92 KOG1457|consensus 97.3 0.00067 1.4E-08 61.8 6.9 73 58-130 36-118 (284)
93 KOG2416|consensus 97.3 0.00024 5.3E-09 71.2 4.0 84 54-137 442-529 (718)
94 COG5175 MOT2 Transcriptional r 97.2 0.0011 2.3E-08 63.5 7.9 83 59-141 117-214 (480)
95 KOG4285|consensus 96.9 0.0032 7E-08 59.2 7.9 79 55-135 196-275 (350)
96 KOG4211|consensus 96.7 0.003 6.5E-08 62.1 6.3 84 55-140 9-96 (510)
97 KOG1190|consensus 96.7 0.0028 6.1E-08 61.6 5.9 71 58-128 416-489 (492)
98 KOG2202|consensus 96.6 0.001 2.2E-08 60.7 2.1 62 71-132 83-150 (260)
99 KOG4205|consensus 96.6 0.0014 3E-08 60.9 3.0 69 56-125 6-80 (311)
100 KOG2314|consensus 96.5 0.0055 1.2E-07 61.5 6.1 79 56-137 58-149 (698)
101 KOG1457|consensus 96.4 0.0038 8.3E-08 57.0 4.2 64 54-117 208-273 (284)
102 KOG4205|consensus 96.1 0.0076 1.7E-07 56.0 4.6 80 56-136 97-182 (311)
103 PF04847 Calcipressin: Calcipr 96.0 0.016 3.5E-07 50.1 6.1 64 69-132 8-73 (184)
104 KOG4676|consensus 96.0 0.012 2.6E-07 57.2 5.5 84 58-141 9-102 (479)
105 PF04059 RRM_2: RNA recognitio 96.0 0.061 1.3E-06 42.4 8.5 71 58-128 3-85 (97)
106 KOG4211|consensus 95.9 0.017 3.6E-07 57.0 6.3 79 57-136 104-188 (510)
107 KOG2193|consensus 95.4 0.014 3.1E-07 57.3 3.7 71 57-127 2-73 (584)
108 KOG1996|consensus 94.9 0.072 1.5E-06 50.4 6.5 68 67-134 294-371 (378)
109 KOG3152|consensus 94.9 0.018 3.9E-07 53.1 2.5 66 56-121 74-157 (278)
110 KOG4307|consensus 94.6 0.068 1.5E-06 55.2 6.1 69 58-126 869-943 (944)
111 KOG4574|consensus 94.5 0.024 5.1E-07 59.2 2.7 64 68-131 310-375 (1007)
112 KOG4210|consensus 94.5 0.021 4.5E-07 52.2 2.0 70 59-129 187-263 (285)
113 KOG1456|consensus 94.1 0.12 2.5E-06 50.4 6.1 76 56-131 287-364 (494)
114 KOG4209|consensus 93.8 0.088 1.9E-06 47.0 4.4 71 56-127 101-177 (231)
115 KOG0226|consensus 92.1 0.058 1.3E-06 49.9 0.8 67 59-125 193-265 (290)
116 KOG1995|consensus 91.9 0.18 3.9E-06 48.1 3.8 73 57-129 67-153 (351)
117 KOG0112|consensus 91.5 0.2 4.3E-06 52.8 4.0 72 59-130 458-531 (975)
118 KOG4019|consensus 91.0 0.16 3.5E-06 44.9 2.4 101 59-159 13-123 (193)
119 KOG4307|consensus 91.0 0.56 1.2E-05 48.8 6.5 82 58-140 4-87 (944)
120 KOG1365|consensus 90.9 0.62 1.4E-05 45.7 6.4 84 56-139 280-371 (508)
121 KOG0115|consensus 90.6 0.23 5E-06 45.9 3.1 64 58-121 33-101 (275)
122 KOG1855|consensus 89.9 0.3 6.4E-06 48.1 3.4 57 58-114 233-308 (484)
123 KOG0128|consensus 87.7 0.083 1.8E-06 55.1 -2.1 69 56-124 667-741 (881)
124 PF08952 DUF1866: Domain of un 87.2 2 4.4E-05 36.5 6.3 60 71-133 51-110 (146)
125 KOG2193|consensus 87.0 0.066 1.4E-06 52.8 -3.1 78 56-133 80-160 (584)
126 KOG2068|consensus 86.9 0.28 6.1E-06 46.4 1.1 79 60-138 81-171 (327)
127 PF08002 DUF1697: Protein of u 86.0 1.9 4.1E-05 35.3 5.3 84 57-143 3-93 (137)
128 PF03467 Smg4_UPF3: Smg-4/UPF3 85.8 0.72 1.6E-05 39.3 2.9 73 57-129 8-97 (176)
129 KOG0128|consensus 85.2 0.44 9.5E-06 50.0 1.6 70 57-126 737-811 (881)
130 PF03468 XS: XS domain; Inter 84.5 1.3 2.9E-05 35.7 3.7 44 59-102 11-66 (116)
131 KOG1365|consensus 84.4 0.56 1.2E-05 46.0 1.8 81 59-140 164-253 (508)
132 KOG2135|consensus 79.0 1.2 2.6E-05 44.4 1.9 61 70-131 387-447 (526)
133 PF00403 HMA: Heavy-metal-asso 78.9 10 0.00023 25.7 6.1 52 59-110 2-57 (62)
134 KOG0105|consensus 75.3 12 0.00026 33.9 7.0 63 55-118 114-176 (241)
135 smart00738 NGN In Spt5p, this 71.6 9.4 0.0002 28.5 4.7 49 89-137 56-105 (106)
136 KOG2591|consensus 71.0 4.5 9.8E-05 41.4 3.6 76 58-137 177-256 (684)
137 PF08675 RNA_bind: RNA binding 69.9 13 0.00027 29.5 5.2 53 59-114 12-64 (87)
138 PF10309 DUF2414: Protein of u 66.5 22 0.00047 26.2 5.6 51 58-112 7-62 (62)
139 PF14268 YoaP: YoaP-like 65.6 5.4 0.00012 27.7 2.1 36 95-130 3-40 (44)
140 PF03880 DbpA: DbpA RNA bindin 65.5 7.5 0.00016 28.3 3.0 60 67-127 12-74 (74)
141 KOG0112|consensus 64.3 2 4.4E-05 45.6 -0.3 74 54-127 370-448 (975)
142 PF15023 DUF4523: Protein of u 62.5 20 0.00043 31.2 5.4 67 54-122 84-154 (166)
143 PRK11901 hypothetical protein; 61.8 9.6 0.00021 36.3 3.7 52 59-114 248-306 (327)
144 KOG0129|consensus 61.0 15 0.00033 37.0 5.1 67 54-123 257-334 (520)
145 PRK11895 ilvH acetolactate syn 59.9 55 0.0012 27.9 7.7 75 68-142 52-141 (161)
146 PF08734 GYD: GYD domain; Int 58.5 81 0.0017 24.1 8.0 56 59-114 2-69 (91)
147 COG2608 CopZ Copper chaperone 56.6 25 0.00055 25.4 4.4 45 58-102 5-49 (71)
148 PRK10905 cell division protein 56.0 16 0.00035 34.9 4.1 52 58-113 249-307 (328)
149 KOG4210|consensus 54.2 8.9 0.00019 35.2 2.1 73 55-127 87-165 (285)
150 COG4010 Uncharacterized protei 52.9 29 0.00062 30.3 4.8 46 63-112 118-163 (170)
151 PF08544 GHMP_kinases_C: GHMP 51.8 64 0.0014 22.7 5.8 42 71-113 37-80 (85)
152 PRK04635 histidinol-phosphate 49.8 1.2E+02 0.0025 27.3 8.5 65 71-139 277-349 (354)
153 PRK10629 EnvZ/OmpR regulon mod 49.7 63 0.0014 26.6 6.2 64 58-123 37-103 (127)
154 TIGR00922 nusG transcription t 49.5 39 0.00085 27.7 5.0 60 81-140 47-108 (172)
155 PF15513 DUF4651: Domain of un 46.3 21 0.00047 26.5 2.7 20 71-90 9-28 (62)
156 TIGR00119 acolac_sm acetolacta 46.2 1.4E+02 0.003 25.4 7.9 74 69-142 52-140 (157)
157 COG1207 GlmU N-acetylglucosami 45.8 26 0.00057 34.9 4.0 57 58-114 99-173 (460)
158 PRK05609 nusG transcription an 45.0 39 0.00084 27.8 4.4 53 87-139 60-114 (181)
159 PF01900 RNase_P_Rpp14: Rpp14/ 44.7 32 0.00069 26.0 3.6 53 71-124 29-88 (107)
160 PF13561 adh_short_C2: Enoyl-( 44.6 37 0.00081 28.4 4.2 45 95-140 23-67 (241)
161 PF11303 DUF3105: Protein of u 44.4 49 0.0011 27.3 4.8 21 119-139 97-117 (130)
162 cd07141 ALDH_F1AB_F2_RALDH1 NA 43.9 1E+02 0.0022 29.6 7.5 64 60-142 372-436 (481)
163 cd07110 ALDH_F10_BADH Arabidop 43.3 89 0.0019 29.6 7.0 66 59-142 347-412 (456)
164 TIGR00768 rimK_fam alpha-L-glu 42.3 87 0.0019 26.5 6.2 44 69-113 111-156 (277)
165 PF09869 DUF2096: Uncharacteri 41.8 66 0.0014 28.2 5.4 47 62-112 117-163 (169)
166 PF09370 TIM-br_sig_trns: TIM- 41.3 60 0.0013 30.3 5.4 73 68-140 158-238 (268)
167 PF00106 adh_short: short chai 41.1 1E+02 0.0022 23.8 5.9 73 59-140 3-75 (167)
168 KOG0156|consensus 40.9 20 0.00043 35.2 2.3 48 58-105 34-84 (489)
169 COG2958 Uncharacterized protei 40.5 17 0.00036 34.3 1.6 48 41-109 206-253 (307)
170 PF10369 ALS_ss_C: Small subun 39.7 46 0.001 24.6 3.6 50 92-141 2-58 (75)
171 PRK13231 nitrogenase reductase 39.0 81 0.0017 27.2 5.6 72 67-139 181-262 (264)
172 cd00002 YbaK_deacylase This CD 39.0 78 0.0017 25.5 5.2 61 71-138 27-95 (152)
173 PF14882 GHL12: Hypothetical g 38.6 22 0.00047 25.2 1.6 17 96-112 37-53 (53)
174 COG3454 Metal-dependent hydrol 38.2 58 0.0013 31.7 4.9 51 71-121 213-272 (377)
175 cd07148 ALDH_RL0313 Uncharacte 37.9 1.2E+02 0.0026 28.9 7.0 65 60-142 346-410 (455)
176 PF14111 DUF4283: Domain of un 37.4 34 0.00073 26.9 2.8 35 55-89 103-138 (153)
177 PF01071 GARS_A: Phosphoribosy 37.3 1.1E+02 0.0024 26.9 6.1 44 69-112 25-70 (194)
178 PF07576 BRAP2: BRCA1-associat 36.7 1.4E+02 0.003 24.0 6.1 59 59-117 16-79 (110)
179 cd07152 ALDH_BenzADH NAD-depen 36.6 1.4E+02 0.0031 28.1 7.2 65 60-142 333-397 (443)
180 TIGR00288 conserved hypothetic 36.6 1.8E+02 0.0039 25.0 7.2 80 62-141 32-127 (160)
181 KOG1208|consensus 36.1 1.7E+02 0.0036 27.2 7.5 70 58-140 37-109 (314)
182 COG0089 RplW Ribosomal protein 36.0 1.1E+02 0.0024 24.3 5.4 48 64-121 6-53 (94)
183 PF00159 Hormone_3: Pancreatic 35.5 27 0.00057 23.4 1.6 17 124-140 9-25 (36)
184 KOG4849|consensus 35.1 77 0.0017 31.4 5.2 65 57-121 81-153 (498)
185 PLN00412 NADP-dependent glycer 35.0 1.5E+02 0.0032 28.9 7.2 66 59-142 376-441 (496)
186 PF10567 Nab6_mRNP_bdg: RNA-re 34.9 45 0.00098 31.7 3.5 35 54-88 13-47 (309)
187 PLN02278 succinic semialdehyde 34.9 1.6E+02 0.0035 28.6 7.4 66 59-142 385-450 (498)
188 TIGR01237 D1pyr5carbox2 delta- 34.4 1.4E+02 0.0029 29.2 6.9 65 59-142 397-462 (511)
189 PRK14428 acylphosphatase; Prov 34.3 44 0.00095 26.2 2.9 58 79-140 3-67 (97)
190 KOG2318|consensus 34.0 1.5E+02 0.0033 30.8 7.2 72 53-124 171-300 (650)
191 PF02668 TauD: Taurine catabol 33.7 49 0.0011 27.6 3.3 30 57-88 37-66 (258)
192 cd07117 ALDH_StaphAldA1 Unchar 33.5 1.1E+02 0.0023 29.6 6.0 66 59-142 364-429 (475)
193 PF06983 3-dmu-9_3-mt: 3-demet 33.3 43 0.00094 26.4 2.8 53 79-142 42-95 (116)
194 cd07147 ALDH_F21_RNP123 Aldehy 32.5 1.8E+02 0.0039 27.5 7.2 66 59-142 342-407 (452)
195 PF12518 DUF3721: Protein of u 31.8 39 0.00084 22.5 1.9 15 99-113 1-15 (34)
196 PF05036 SPOR: Sporulation rel 31.7 68 0.0015 21.8 3.2 16 98-113 50-65 (76)
197 cd07131 ALDH_AldH-CAJ73105 Unc 31.6 1.8E+02 0.0038 27.8 7.0 66 59-142 364-429 (478)
198 PF07894 DUF1669: Protein of u 31.3 61 0.0013 30.4 3.8 58 86-143 4-67 (284)
199 PF04472 DUF552: Protein of un 31.2 1E+02 0.0022 22.3 4.3 41 96-140 3-45 (73)
200 PRK01533 histidinol-phosphate 31.2 2.4E+02 0.0051 25.9 7.6 63 73-140 285-350 (366)
201 PF03439 Spt5-NGN: Early trans 31.1 1.1E+02 0.0025 22.8 4.6 38 82-119 33-71 (84)
202 PRK15398 aldehyde dehydrogenas 30.7 2E+02 0.0043 28.0 7.3 67 59-142 345-412 (465)
203 cd07101 ALDH_SSADH2_GabD2 Myco 30.5 1.9E+02 0.0041 27.5 7.0 64 60-141 343-406 (454)
204 PF07292 NID: Nmi/IFP 35 domai 30.4 24 0.00053 27.5 0.9 20 57-76 53-72 (88)
205 PF04019 DUF359: Protein of un 30.2 1.2E+02 0.0026 24.9 4.9 46 70-115 71-121 (121)
206 CHL00100 ilvH acetohydroxyacid 30.2 3.2E+02 0.0068 23.7 7.7 73 70-142 57-141 (174)
207 TIGR00011 YbaK_EbsC ybaK/ebsC 30.1 1.5E+02 0.0032 23.8 5.4 61 71-138 26-94 (152)
208 PF02913 FAD-oxidase_C: FAD li 30.1 57 0.0012 26.7 3.1 24 91-114 4-27 (248)
209 PF13307 Helicase_C_2: Helicas 29.8 1.8E+02 0.0038 23.9 5.9 50 90-141 7-57 (167)
210 KOG4660|consensus 29.7 86 0.0019 32.0 4.7 45 90-135 429-482 (549)
211 cd04332 YbaK_like YbaK-like. 29.0 1.3E+02 0.0029 22.9 4.8 49 83-138 29-80 (136)
212 TIGR03821 AblA_like_1 lysine-2 28.8 1E+02 0.0022 28.5 4.8 65 67-139 190-260 (321)
213 TIGR00405 L26e_arch ribosomal 28.8 1E+02 0.0022 24.9 4.2 44 89-137 35-79 (145)
214 PRK07908 hypothetical protein; 28.8 2.7E+02 0.0058 24.8 7.3 49 91-140 285-342 (349)
215 PF01693 Cauli_VI: Caulimoviru 28.7 64 0.0014 21.4 2.6 18 91-108 27-44 (44)
216 PRK13473 gamma-aminobutyraldeh 28.5 1.3E+02 0.0029 28.6 5.7 66 59-142 363-428 (475)
217 PRK00523 hypothetical protein; 28.3 47 0.001 25.5 2.1 18 65-82 37-54 (72)
218 TIGR01125 MiaB-like tRNA modif 28.1 2.1E+02 0.0045 27.1 6.8 84 57-140 218-315 (430)
219 PRK11370 YciI-like protein; Re 27.2 63 0.0014 24.7 2.7 21 119-139 58-78 (99)
220 TIGR02381 cspD cold shock doma 26.9 41 0.00089 24.4 1.5 22 78-101 1-22 (68)
221 PRK13252 betaine aldehyde dehy 26.9 1.5E+02 0.0033 28.5 5.7 64 60-142 371-435 (488)
222 PRK12745 3-ketoacyl-(acyl-carr 26.9 3.3E+02 0.0072 22.5 7.1 71 58-139 4-74 (256)
223 cd07105 ALDH_SaliADH Salicylal 26.9 2.5E+02 0.0054 26.5 7.1 65 59-141 322-386 (432)
224 PRK09847 gamma-glutamyl-gamma- 26.5 1.5E+02 0.0033 28.7 5.8 65 60-142 383-447 (494)
225 cd07121 ALDH_EutE Ethanolamine 26.5 1.9E+02 0.0041 27.7 6.3 67 59-142 315-382 (429)
226 PRK06949 short chain dehydroge 26.2 3.2E+02 0.0069 22.6 6.9 70 58-139 11-80 (258)
227 PRK01844 hypothetical protein; 26.1 54 0.0012 25.1 2.1 18 65-82 36-53 (72)
228 KOG0129|consensus 26.1 1.7E+02 0.0036 29.9 5.9 54 58-111 372-432 (520)
229 PRK08063 enoyl-(acyl carrier p 26.0 2.9E+02 0.0063 22.7 6.6 70 58-139 6-76 (250)
230 PF14026 DUF4242: Protein of u 26.0 81 0.0017 23.6 3.0 46 58-103 2-56 (77)
231 cd07077 ALDH-like NAD(P)+-depe 25.9 1.4E+02 0.003 27.9 5.2 47 95-142 301-348 (397)
232 TIGR03820 lys_2_3_AblA lysine- 25.9 1.9E+02 0.004 28.4 6.2 65 67-139 203-272 (417)
233 PRK14332 (dimethylallyl)adenos 25.7 2.4E+02 0.0052 27.3 6.9 82 57-140 234-331 (449)
234 PRK14333 (dimethylallyl)adenos 25.6 1E+02 0.0022 29.5 4.4 82 58-140 239-335 (448)
235 PF09162 Tap-RNA_bind: Tap, RN 25.2 1E+02 0.0023 24.1 3.6 48 71-122 25-75 (88)
236 PRK08589 short chain dehydroge 25.2 2.9E+02 0.0063 23.6 6.7 70 58-140 8-77 (272)
237 cd07081 ALDH_F20_ACDH_EutE-lik 24.9 4.7E+02 0.01 25.3 8.7 69 59-142 310-384 (439)
238 cd07107 ALDH_PhdK-like Nocardi 24.9 1.9E+02 0.004 27.5 5.9 64 60-142 346-410 (456)
239 cd07136 ALDH_YwdH-P39616 Bacil 24.9 3E+02 0.0065 26.6 7.3 66 59-142 315-380 (449)
240 cd00126 PAH Pancreatic Hormone 24.5 60 0.0013 21.8 1.8 16 125-140 10-25 (36)
241 PF00171 Aldedh: Aldehyde dehy 24.4 1.9E+02 0.0041 27.4 5.9 66 59-142 354-419 (462)
242 cd04908 ACT_Bt0572_1 N-termina 24.4 87 0.0019 21.5 2.7 40 72-112 17-57 (66)
243 cd07113 ALDH_PADH_NahF Escheri 24.4 2E+02 0.0044 27.6 6.1 65 60-142 367-431 (477)
244 PRK12450 foldase protein PrsA; 24.3 1.5E+02 0.0032 27.2 4.9 39 67-113 132-170 (309)
245 PLN02466 aldehyde dehydrogenas 24.1 2.1E+02 0.0045 28.4 6.2 66 59-142 421-486 (538)
246 PF13732 DUF4162: Domain of un 24.1 50 0.0011 23.6 1.5 45 96-140 16-61 (84)
247 PRK06082 4-aminobutyrate amino 24.0 3.9E+02 0.0085 25.8 7.9 69 71-139 363-445 (459)
248 KOG3424|consensus 23.6 2.1E+02 0.0045 24.3 5.2 48 59-107 23-84 (132)
249 PLN02936 epsilon-ring hydroxyl 23.5 99 0.0021 29.3 3.8 46 60-108 29-74 (489)
250 PRK12866 YciI-like protein; Re 23.3 87 0.0019 24.2 2.8 23 118-140 48-70 (97)
251 PLN03034 phosphoglycerate kina 23.3 1.8E+02 0.004 29.2 5.7 71 71-141 122-218 (481)
252 PRK13805 bifunctional acetalde 23.3 2.5E+02 0.0053 29.4 6.8 67 61-142 330-396 (862)
253 PRK05943 50S ribosomal protein 23.1 91 0.002 23.9 2.9 52 63-126 37-91 (94)
254 PRK14998 cold shock-like prote 22.8 56 0.0012 24.3 1.6 22 78-101 1-22 (73)
255 TIGR03642 cas_csx13 CRISPR-ass 22.7 3.6E+02 0.0078 22.3 6.4 67 63-138 1-76 (124)
256 cd07145 ALDH_LactADH_F420-Bios 22.6 3.2E+02 0.0069 25.9 7.0 64 60-141 347-410 (456)
257 cd07085 ALDH_F6_MMSDH Methylma 22.6 2.2E+02 0.0049 27.2 6.0 65 60-142 365-429 (478)
258 PF03672 UPF0154: Uncharacteri 22.5 71 0.0015 23.9 2.1 18 65-82 29-46 (64)
259 cd07132 ALDH_F3AB Aldehyde deh 22.5 3.5E+02 0.0077 25.8 7.3 65 60-142 316-380 (443)
260 PF03703 bPH_2: Bacterial PH d 22.3 1.5E+02 0.0033 20.3 3.7 38 74-111 39-79 (80)
261 TIGR01574 miaB-methiolase tRNA 22.2 2.9E+02 0.0062 26.4 6.6 80 57-138 230-322 (438)
262 COG4586 ABC-type uncharacteriz 22.0 1.4E+02 0.003 28.7 4.4 79 59-138 227-323 (325)
263 COG0150 PurM Phosphoribosylami 22.0 38 0.00083 32.6 0.7 52 63-114 263-321 (345)
264 COG4274 Uncharacterized conser 21.9 2.8E+02 0.0061 22.7 5.5 59 55-113 8-78 (104)
265 cd07086 ALDH_F7_AASADH-like NA 21.7 2.2E+02 0.0048 27.3 5.8 64 60-141 364-429 (478)
266 PRK06172 short chain dehydroge 21.6 3.8E+02 0.0083 22.2 6.6 71 57-139 8-78 (253)
267 TIGR03374 ABALDH 1-pyrroline d 21.5 2.7E+02 0.0059 26.9 6.4 66 59-142 362-427 (472)
268 cd07095 ALDH_SGSD_AstD N-succi 21.2 2.9E+02 0.0062 26.3 6.3 51 78-142 337-387 (431)
269 PRK11026 ftsX cell division AB 21.1 4.3E+02 0.0092 24.4 7.3 73 58-141 69-154 (309)
270 cd07094 ALDH_F21_LactADH-like 21.1 2.9E+02 0.0064 26.1 6.4 66 59-142 343-408 (453)
271 TIGR00597 rad10 DNA repair pro 21.0 76 0.0016 26.0 2.1 65 60-137 46-112 (112)
272 PF07876 Dabb: Stress responsi 21.0 76 0.0017 23.0 2.0 18 121-138 56-73 (97)
273 cd06556 ICL_KPHMT Members of t 20.9 1.5E+02 0.0033 26.5 4.3 46 97-142 147-193 (240)
274 TIGR02518 EutH_ACDH acetaldehy 20.8 5.7E+02 0.012 25.1 8.4 54 78-142 337-391 (488)
275 PRK06935 2-deoxy-D-gluconate 3 20.7 3.4E+02 0.0073 22.7 6.1 70 57-139 16-85 (258)
276 PF09623 Cas_NE0113: CRISPR-as 20.7 2.4E+02 0.0051 25.4 5.4 80 60-139 7-100 (224)
277 PF11767 SET_assoc: Histone ly 20.6 1.4E+02 0.0031 22.0 3.4 54 68-124 12-65 (66)
278 PTZ00381 aldehyde dehydrogenas 20.6 2.8E+02 0.0061 27.1 6.3 65 59-142 326-391 (493)
279 cd07099 ALDH_DDALDH Methylomon 20.5 2.9E+02 0.0063 26.0 6.2 65 59-141 342-406 (453)
280 PF02714 DUF221: Domain of unk 20.4 1E+02 0.0022 27.5 3.1 36 95-132 1-37 (325)
281 cd07122 ALDH_F20_ACDH Coenzyme 20.4 3.9E+02 0.0085 25.8 7.2 66 61-142 316-382 (436)
282 KOG0684|consensus 20.4 91 0.002 31.4 2.9 67 70-137 54-132 (486)
283 TIGR03250 PhnAcAld_DH putative 20.3 2.6E+02 0.0057 26.9 6.0 66 59-142 359-424 (472)
284 cd07137 ALDH_F3FHI Plant aldeh 20.3 3E+02 0.0065 26.3 6.3 67 58-142 320-386 (432)
285 PRK14327 (dimethylallyl)adenos 20.3 2.1E+02 0.0045 28.5 5.4 83 57-140 295-392 (509)
286 cd07098 ALDH_F15-22 Aldehyde d 20.2 3.1E+02 0.0067 26.1 6.4 64 59-141 352-416 (465)
287 cd02040 NifH NifH gene encodes 20.1 2.4E+02 0.0052 24.0 5.1 46 68-113 189-242 (270)
288 PRK11241 gabD succinate-semial 20.0 3E+02 0.0065 26.7 6.4 66 59-142 371-436 (482)
289 PLN02203 aldehyde dehydrogenas 20.0 2.6E+02 0.0055 27.4 5.9 66 59-142 331-396 (484)
No 1
>KOG0130|consensus
Probab=99.71 E-value=6.6e-18 Score=141.83 Aligned_cols=74 Identities=22% Similarity=0.322 Sum_probs=70.3
Q ss_pred cccceE-EecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeC
Q psy10308 54 WSGTWV-LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA 126 (225)
Q Consensus 54 ~~~~wL-vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF 126 (225)
.-..|| +|+++|++++|+++.++|.+||+|+++||||+ +|||||+|.|++||++||++||+..|.+++|.|+|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 357895 67999999999999999999999999999988 89999999999999999999999999999999998
Q ss_pred C
Q psy10308 127 P 127 (225)
Q Consensus 127 A 127 (225)
+
T Consensus 149 ~ 149 (170)
T KOG0130|consen 149 C 149 (170)
T ss_pred E
Confidence 7
No 2
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=5.9e-15 Score=100.61 Aligned_cols=65 Identities=22% Similarity=0.389 Sum_probs=61.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
|+|.||++.+++++|+++|.+||+|..+++.. .+|+|||+|.++++|++|++.||+..+.+.+|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 78999999999999999999999999999965 499999999999999999999999999999884
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.57 E-value=9.8e-15 Score=119.09 Aligned_cols=74 Identities=14% Similarity=0.233 Sum_probs=69.5
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
+.-|+|.||++.++|++|+++|.+||+|..++|- .++|||||.|.+.++|++|++.||+++|.+..|.|++|.+
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~ 113 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAND 113 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCc
Confidence 4579999999999999999999999999999983 4589999999999999999999999999999999999976
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.56 E-value=2e-14 Score=126.59 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=77.9
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC--
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP-- 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA-- 127 (225)
.+.|+|+||++.++|++|+++|.+||+|+.++| +.++|||||+|.+.++|++||+.||+..|.+.+|.|++|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 347999999999999999999999999999998 246899999999999999999999999999999999887
Q ss_pred -------------------ChHHHHHHHHhhcc
Q psy10308 128 -------------------SDAEVQSLLAHLSA 141 (225)
Q Consensus 128 -------------------se~ev~~~~~~~~~ 141 (225)
+|+|+..+|.+.+.
T Consensus 83 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~ 115 (352)
T TIGR01661 83 SSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ 115 (352)
T ss_pred cccccccceEEECCccccCCHHHHHHHHhccCC
Confidence 47788888887654
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=2e-14 Score=126.57 Aligned_cols=73 Identities=23% Similarity=0.317 Sum_probs=68.7
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..|+|.||++.+++++|+++|.+||+|..++|- ..+|||||.|.+.++|++|+++|||+.|.++.|.|+|++.
T Consensus 270 ~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 270 YCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 359999999999999999999999999999983 4599999999999999999999999999999999999874
No 6
>KOG4207|consensus
Probab=99.53 E-value=9.7e-15 Score=129.44 Aligned_cols=74 Identities=14% Similarity=0.235 Sum_probs=70.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
+|.-|+|.|||.+.+-++|+.+|.+||.|.+|+|. ..+|||||||..|.||++|.++|++.+|.+..|.|+||.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 57889999999999999999999999999999994 449999999999999999999999999999999999986
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.49 E-value=1.2e-13 Score=127.09 Aligned_cols=87 Identities=17% Similarity=0.350 Sum_probs=78.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC-
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP- 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA- 127 (225)
..+.|+|.||++++++++|++||.+||+|+.++|- .++|||||+|.+.++|++|++.||+.+|.+..|.|++|
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~ 185 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR 185 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence 45689999999999999999999999999999983 45799999999999999999999999999999999876
Q ss_pred --------------------ChHHHHHHHHhhcc
Q psy10308 128 --------------------SDAEVQSLLAHLSA 141 (225)
Q Consensus 128 --------------------se~ev~~~~~~~~~ 141 (225)
+|+||..+|.+-+.
T Consensus 186 p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~ 219 (346)
T TIGR01659 186 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQ 219 (346)
T ss_pred ccccccccceeEEeCCCCcccHHHHHHHHHhcCC
Confidence 56788889987653
No 8
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.45 E-value=2.4e-13 Score=92.50 Aligned_cols=55 Identities=18% Similarity=0.326 Sum_probs=51.7
Q ss_pred HHHHHHhhCCeeEEEecCCC-ceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 73 LKTLCVQHGPLQNFHLYLNH-SLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 73 Lr~Lc~qhGpV~tfhlnl~~-G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
|+++|.+||+|..+++...+ ++|||+|.+.++|++|++.||++.+.+.+|.|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998877 99999999999999999999999999999999986
No 9
>smart00362 RRM_2 RNA recognition motif.
Probab=99.44 E-value=7.9e-13 Score=87.47 Aligned_cols=67 Identities=27% Similarity=0.486 Sum_probs=62.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCC----ceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNH----SLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~----G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
|+|+||++.++.++|+++|.+||+|..+++...+ |+|||+|.+.++|++|++.||+..+.+..|.|+
T Consensus 2 v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 2 LFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred EEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 7899999999999999999999999999987665 999999999999999999999999999888764
No 10
>smart00360 RRM RNA recognition motif.
Probab=99.40 E-value=1.6e-12 Score=85.53 Aligned_cols=65 Identities=23% Similarity=0.398 Sum_probs=59.6
Q ss_pred ecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 61 LKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 61 L~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
|.||+..+++++|+++|.+||+|..+++... +|+|||+|.+.++|++|++.||++.+.+..|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999998433 7899999999999999999999999999888764
No 11
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.39 E-value=9.7e-13 Score=91.60 Aligned_cols=65 Identities=25% Similarity=0.429 Sum_probs=59.0
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-----CceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-----HSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-----~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
|+|+||++.+++++|+++|.+||+|..+++..+ +|+|||+|.+.++|++|++.+|+..+.+..|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 789999999999999999999999999999655 79999999999999999999999999998873
No 12
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.37 E-value=5.1e-12 Score=83.94 Aligned_cols=68 Identities=24% Similarity=0.414 Sum_probs=63.7
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-----CceEEEEeCCHHHHHHHHhhhccceecCceEEEeC
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-----HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA 126 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-----~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF 126 (225)
|+|+||++.+++++|+++|.+||+|..+++..+ +|+|+|+|.+.++|+.|++.+|+..+.+..|.|++
T Consensus 2 i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 2 LFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred EEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 789999999999999999999999999998654 79999999999999999999999999999998864
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.35 E-value=2.9e-12 Score=121.39 Aligned_cols=77 Identities=19% Similarity=0.359 Sum_probs=71.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
...|+|+||.+.+++++|+++|.+||+|..+++ +.++|+|||+|++.++|++|+..||+..+++..|.|.+|...
T Consensus 285 ~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 285 GVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 346999999999999999999999999999998 355899999999999999999999999999999999999976
Q ss_pred HH
Q psy10308 131 EV 132 (225)
Q Consensus 131 ev 132 (225)
|.
T Consensus 365 ~~ 366 (562)
T TIGR01628 365 EQ 366 (562)
T ss_pred HH
Confidence 64
No 14
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.33 E-value=3.2e-12 Score=117.76 Aligned_cols=75 Identities=23% Similarity=0.330 Sum_probs=67.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecC--ceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGN--TTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~--ttI~aeFA 127 (225)
...|+|.||.+.+++++|+++|.+||+|+.++|-.+ +|+|||+|.++++|++||+.||++.|.+ ..|.|.+|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 345999999999999999999999999999998433 6999999999999999999999988765 56999999
Q ss_pred ChH
Q psy10308 128 SDA 130 (225)
Q Consensus 128 se~ 130 (225)
.|.
T Consensus 273 ~~~ 275 (346)
T TIGR01659 273 EEH 275 (346)
T ss_pred Ccc
Confidence 975
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.30 E-value=1.4e-11 Score=116.84 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=65.5
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
.|+|.||++.++|++|+++|.+||+|.+++|. .++|||||+|.+.++|++|++.||+..|.+..|.|.++
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 59999999999999999999999999999983 45799999999999999999999999999999999775
No 16
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.29 E-value=7.8e-12 Score=114.58 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=69.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||+..+++++|+.+|.+||+|..+.|. ..+|||||.|.+.++|++|++.||+.+|.+..|.|.||.+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 4569999999999999999999999999999984 4589999999999999999999999999999999999884
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.28 E-value=1.5e-11 Score=121.40 Aligned_cols=87 Identities=18% Similarity=0.340 Sum_probs=77.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC-
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP- 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA- 127 (225)
.++-|+|.||++++++++|+++|.+||+|..+++ +.++|||||+|.+.++|++|++.||++.|.++.|.|..+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4567999999999999999999999999999998 356999999999999999999999999999999988643
Q ss_pred -------------------------------ChHHHHHHHHhhcc
Q psy10308 128 -------------------------------SDAEVQSLLAHLSA 141 (225)
Q Consensus 128 -------------------------------se~ev~~~~~~~~~ 141 (225)
+|+|+..+|..-+.
T Consensus 186 ~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~ 230 (612)
T TIGR01645 186 NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE 230 (612)
T ss_pred cccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC
Confidence 57889999887644
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.28 E-value=1.2e-11 Score=114.49 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=69.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||+..+++++|+++|.+||+|..|.| +..+|||||.|.+.++|++|++.||+..|++..|.|++|..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 346999999999999999999999999999987 34699999999999999999999999999999999999964
No 19
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.27 E-value=1.2e-11 Score=116.66 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=70.9
Q ss_pred ccceEEecCCCC-CcchhHHHHHHHhhCCeeEEEecCC-CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH
Q psy10308 55 SGTWVLLKNLTP-QIDGSTLKTLCVQHGPLQNFHLYLN-HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 55 ~~~wLvL~NLtp-Qide~tLr~Lc~qhGpV~tfhlnl~-~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev 132 (225)
.+.-|+|.||.+ .+++++|++||.+||+|..++|-.+ +|+|||+|.+.++|++|++.||+++|.+..|.|+++....+
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 345799999998 6999999999999999999998544 79999999999999999999999999999999999976654
No 20
>KOG0145|consensus
Probab=99.26 E-value=5.1e-12 Score=115.64 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=67.4
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccc-eecCce-EEEeCCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNC-ILGNTT-IFAEAPS 128 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c-~Lg~tt-I~aeFAs 128 (225)
.+|||++|+.-|+..+|+.||.+||.|++..| .++||++||||+.|+||+.||+.|||. +.+-+. |.|+||+
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 47999999999999999999999999999987 588999999999999999999999995 555555 9999998
Q ss_pred hH
Q psy10308 129 DA 130 (225)
Q Consensus 129 e~ 130 (225)
.-
T Consensus 208 nP 209 (360)
T KOG0145|consen 208 NP 209 (360)
T ss_pred Cc
Confidence 43
No 21
>KOG0122|consensus
Probab=99.26 E-value=1.1e-11 Score=111.65 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=70.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
-++-|.|+||.+.++|++|++||-.||+|..++| ++.+|||||-|.++|+|++||+.|||.=+.+--|.||++.
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 3566999999999999999999999999999999 5789999999999999999999999998888889999987
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 5
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.26 E-value=3.5e-11 Score=110.31 Aligned_cols=85 Identities=15% Similarity=0.240 Sum_probs=75.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeC---
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA--- 126 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF--- 126 (225)
..-|+|.||+..+++++|+++|.+||+|..++| +..+|||||+|.+.++|++|++ ||+..|.+..|.|+.
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecch
Confidence 456999999999999999999999999999998 3459999999999999999996 899999999888765
Q ss_pred ------------------------------CChHHHHHHHHhhcc
Q psy10308 127 ------------------------------PSDAEVQSLLAHLSA 141 (225)
Q Consensus 127 ------------------------------Ase~ev~~~~~~~~~ 141 (225)
.+|+||..+|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~ 212 (457)
T TIGR01622 168 EKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD 212 (457)
T ss_pred hhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC
Confidence 458889999887654
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.25 E-value=1.6e-11 Score=121.29 Aligned_cols=72 Identities=13% Similarity=0.225 Sum_probs=67.9
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
.-|+|.||++.+++++|+.+|.+||+|+.++|. .++|||||+|.+.++|++||+.||+.+|+|+.|.|.+|-
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 469999999999999999999999999999983 469999999999999999999999999999999998876
No 24
>KOG0148|consensus
Probab=99.25 E-value=1.1e-11 Score=113.25 Aligned_cols=79 Identities=18% Similarity=0.316 Sum_probs=74.6
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev 132 (225)
...+-+|+-|++.+++|+.||..|..||+|..+++-.++|||||||++||.|++||-.+|+.+++++.+....-+|.+.
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDD 240 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCC
Confidence 3456799999999999999999999999999999999999999999999999999999999999999999999988765
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.23 E-value=1.9e-11 Score=115.33 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=69.4
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh--ccceecCceEEEeCCChHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL--NNCILGNTTIFAEAPSDAEVQ 133 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL--n~c~Lg~ttI~aeFAse~ev~ 133 (225)
=|+|+||++.++|++|+++|.+||+|..+.|-.++|+|||+|.+.++|++|++.| |+..|.+..|.|+++...++.
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc
Confidence 4899999999999999999999999999999889999999999999999999975 668999999999998755543
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.19 E-value=6.8e-11 Score=106.67 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=68.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC---CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL---NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl---~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
..-|+|.||.+.++|++|+++|.+||+|..+.|.. .+|||||.|.+.++|++|+. ||++.|.++.|.|+.+.+-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 34699999999999999999999999999999953 47999999999999999995 9999999999999998743
No 27
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.19 E-value=6.3e-11 Score=116.30 Aligned_cols=84 Identities=20% Similarity=0.260 Sum_probs=71.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceec-CceEEEe----
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILG-NTTIFAE---- 125 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg-~ttI~ae---- 125 (225)
.+.|+|.||+++++|++|+++|.+||+|.+++| +.++|||||+|.+.|+|++||+.||+.++. +..|.|.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 357999999999999999999999999999998 467999999999999999999999997774 4444443
Q ss_pred -----------CCChHHHHHHHHhh
Q psy10308 126 -----------APSDAEVQSLLAHL 139 (225)
Q Consensus 126 -----------FAse~ev~~~~~~~ 139 (225)
-.+++||..+|...
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv 162 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKV 162 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcc
Confidence 34578887777664
No 28
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.18 E-value=1.2e-10 Score=92.19 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=68.4
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
.-|+|.||+..+++++|+++|.+||+|..+++. ..+|+|||+|.+.++|.+|+..|++..|.+..|.|+.+..
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 569999999999999999999999999999884 4479999999999999999999999999999999999765
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.16 E-value=6.7e-11 Score=116.12 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=70.9
Q ss_pred ceEEecCCCCCcchhHHHHHHHhh--CCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQH--GPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQS 134 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qh--GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~ 134 (225)
.-|+|+||...+++++|+++|.+| |+|..+.+ .++||||+|.++++|++|++.||+.+|.++.|.|++|...+...
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~--~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~ 311 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKK--IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKS 311 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEe--ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCccc
Confidence 359999999999999999999999 99998864 47899999999999999999999999999999999998766654
Q ss_pred HH
Q psy10308 135 LL 136 (225)
Q Consensus 135 ~~ 136 (225)
+.
T Consensus 312 ~~ 313 (578)
T TIGR01648 312 YV 313 (578)
T ss_pred cc
Confidence 44
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.16 E-value=1e-10 Score=108.40 Aligned_cols=76 Identities=22% Similarity=0.215 Sum_probs=65.0
Q ss_pred ceEEecCCCCC---cc-------hhHHHHHHHhhCCeeEEEecC---------CCceEEEEeCCHHHHHHHHhhhcccee
Q psy10308 57 TWVLLKNLTPQ---ID-------GSTLKTLCVQHGPLQNFHLYL---------NHSLALAKYSTREEAIKAQGNLNNCIL 117 (225)
Q Consensus 57 ~wLvL~NLtpQ---id-------e~tLr~Lc~qhGpV~tfhlnl---------~~G~AlVrYstkeEA~kAi~aLn~c~L 117 (225)
.-|+|.|+... +| .++|+++|.+||+|+.++|.. ..|+|||+|.+.++|++|+++|||-.|
T Consensus 410 ~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~ 489 (509)
T TIGR01642 410 KVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF 489 (509)
T ss_pred eEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE
Confidence 45788998543 11 267999999999999999842 269999999999999999999999999
Q ss_pred cCceEEEeCCChHHH
Q psy10308 118 GNTTIFAEAPSDAEV 132 (225)
Q Consensus 118 g~ttI~aeFAse~ev 132 (225)
.+.+|+|+|.+|++-
T Consensus 490 ~gr~v~~~~~~~~~~ 504 (509)
T TIGR01642 490 NDRVVVAAFYGEDCY 504 (509)
T ss_pred CCeEEEEEEeCHHHh
Confidence 999999999998764
No 31
>KOG0125|consensus
Probab=99.14 E-value=8.1e-11 Score=109.70 Aligned_cols=73 Identities=10% Similarity=0.225 Sum_probs=68.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEe--cC--CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL--YL--NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl--nl--~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
=|.|+||+...-+.|||.||.|||+|++|.| |. +|||+||.++..++|++|-+.||+.++.++.|.|..|+.-
T Consensus 98 RLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 98 RLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred eeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 4999999999999999999999999999997 53 4999999999999999999999999999999999998753
No 32
>PLN03213 repressor of silencing 3; Provisional
Probab=99.13 E-value=1.8e-10 Score=112.44 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=76.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec--CCCceEEEEeCCH--HHHHHHHhhhccceecCceEEEeCCChHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY--LNHSLALAKYSTR--EEAIKAQGNLNNCILGNTTIFAEAPSDAE 131 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln--l~~G~AlVrYstk--eEA~kAi~aLn~c~Lg~ttI~aeFAse~e 131 (225)
..-|||.||.+.+++++|+.+|.+||.|..++|- ..||||||.|.+. ++++|||+.||+|++.+++|.|+-|.++=
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~Y 89 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHY 89 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHH
Confidence 4569999999999999999999999999999994 3399999999987 78999999999999999999999999998
Q ss_pred HHHHHHhhc
Q psy10308 132 VQSLLAHLS 140 (225)
Q Consensus 132 v~~~~~~~~ 140 (225)
..|+=+...
T Consensus 90 LeRLkrERe 98 (759)
T PLN03213 90 LARLKREWE 98 (759)
T ss_pred HHHHHHHHH
Confidence 877765543
No 33
>KOG0131|consensus
Probab=99.12 E-value=7.2e-11 Score=102.86 Aligned_cols=71 Identities=27% Similarity=0.324 Sum_probs=68.4
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
-|+|.||.++++++-|.+||.|-|||+++|+ +.+|||+||+|.+.|||+=||+.||++.|.++.|.|.-|+
T Consensus 11 tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 11 TLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred eEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 5999999999999999999999999999999 3569999999999999999999999999999999999998
No 34
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.10 E-value=4e-10 Score=100.94 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=65.7
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecC---CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL---NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl---~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
-|+|+||.+.++|++||++|.+||+|.+++|-. .+|+|||+|.+.+.|+.|+ .|||+.|.++.|.|+-+.+
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 489999999999999999999999999999954 4689999999999999999 6899999999999988765
No 35
>KOG0107|consensus
Probab=99.09 E-value=2e-10 Score=99.62 Aligned_cols=73 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
.+-|||-||...+.+.+|+.+|..||+|.++-|- .--|||||+|++..+|++|+.+||+..|.+..|.||+-+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 5579999999999999999999999999999985 448999999999999999999999999999999999865
No 36
>KOG0144|consensus
Probab=99.08 E-value=1.2e-10 Score=111.54 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=69.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccc-eecCc-e-EEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNC-ILGNT-T-IFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c-~Lg~t-t-I~aeFA 127 (225)
...|+|.=|..+.+|.++|+||.+||-|.++.| .++||+|||+|++||.|..||++||+. ...+- . |+|+||
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEec
Confidence 556899999999999999999999999999998 477999999999999999999999993 33333 3 999999
Q ss_pred C---hHHHHHH
Q psy10308 128 S---DAEVQSL 135 (225)
Q Consensus 128 s---e~ev~~~ 135 (225)
+ |-|+.|.
T Consensus 204 Dtqkdk~~~~l 214 (510)
T KOG0144|consen 204 DTQKDKDGKRL 214 (510)
T ss_pred ccCCCchHHHH
Confidence 8 6677664
No 37
>KOG0114|consensus
Probab=99.05 E-value=1.1e-09 Score=89.05 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=76.7
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEec---CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY---LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQS 134 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln---l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~ 134 (225)
=|+|+||+..|+-+++.+||.+||+|..+.|+ ..+|.|||-|+...+|.||.+.|++..+.+..++|-+-..++..+
T Consensus 20 iLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~~~ 99 (124)
T KOG0114|consen 20 ILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDAFK 99 (124)
T ss_pred eEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHHHH
Confidence 48999999999999999999999999999995 459999999999999999999999999999999999999888877
Q ss_pred HHHhhc
Q psy10308 135 LLAHLS 140 (225)
Q Consensus 135 ~~~~~~ 140 (225)
.+++..
T Consensus 100 ~~~~~k 105 (124)
T KOG0114|consen 100 LMDSRK 105 (124)
T ss_pred HHHhHH
Confidence 777653
No 38
>smart00361 RRM_1 RNA recognition motif.
Probab=99.03 E-value=8.2e-10 Score=79.02 Aligned_cols=56 Identities=16% Similarity=0.204 Sum_probs=47.6
Q ss_pred hhHHHHHHH----hhCCeeEEE-e--c------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 70 GSTLKTLCV----QHGPLQNFH-L--Y------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 70 e~tLr~Lc~----qhGpV~tfh-l--n------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
+++|+++|. +||+|..++ | + ..+|++||+|.+.++|++|++.||+..+.++.|.|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 456666666 999999996 3 2 249999999999999999999999999999999873
No 39
>KOG0108|consensus
Probab=99.02 E-value=6.4e-10 Score=106.27 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=71.3
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
+-++|.|+..+++|+.|.++|++.|+|++|++ +..+||+||+|.+.++|++|++.||+.++.++.|.|++|+.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 67999999999999999999999999999998 344999999999999999999999999999999999999955
Q ss_pred HH
Q psy10308 131 EV 132 (225)
Q Consensus 131 ev 132 (225)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 40
>KOG0111|consensus
Probab=98.99 E-value=1.9e-10 Score=103.44 Aligned_cols=75 Identities=16% Similarity=0.300 Sum_probs=71.2
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAE 131 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~e 131 (225)
-|||-+|+.+++|.-|..-|.-||+|.++++.+ +|||+||+|.-.|+|+.||++||+.+|.++||.|-||...-
T Consensus 12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 499999999999999999999999999999954 49999999999999999999999999999999999998876
Q ss_pred H
Q psy10308 132 V 132 (225)
Q Consensus 132 v 132 (225)
|
T Consensus 92 i 92 (298)
T KOG0111|consen 92 I 92 (298)
T ss_pred c
Confidence 6
No 41
>KOG0127|consensus
Probab=98.95 E-value=1.4e-09 Score=106.76 Aligned_cols=76 Identities=16% Similarity=0.317 Sum_probs=69.8
Q ss_pred ce-EEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-----CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 57 TW-VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-----HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 57 ~w-LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-----~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
-| |+|+||+.++..++|..+|++||.|..+.|... .|||||.|..+.+|++|+..+|+.+++++.|.|+||=+-
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 57 999999999999999999999999999999422 699999999999999999999999999999999999654
Q ss_pred HH
Q psy10308 131 EV 132 (225)
Q Consensus 131 ev 132 (225)
|.
T Consensus 197 d~ 198 (678)
T KOG0127|consen 197 DT 198 (678)
T ss_pred cc
Confidence 43
No 42
>KOG0126|consensus
Probab=98.93 E-value=1.4e-10 Score=101.58 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=67.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
+-||+|.||+.+.+|.||-.+|+|||.|+++.| +.++||||.+|..-.--..|+++|||..|+++||.|+-.
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 459999999999999999999999999999998 466999999999999999999999999999999999854
No 43
>KOG0144|consensus
Probab=98.93 E-value=1.9e-09 Score=103.53 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=65.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhcc-ceecCce--EEEe
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNN-CILGNTT--IFAE 125 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~-c~Lg~tt--I~ae 125 (225)
..-.|+|.-|+..++|++||+||.+||.|..+.| +.++|+.||+|.+++||.+||.+||+ .+|-+.+ |-|+
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 3456899999999999999999999999999998 56699999999999999999999998 5777766 7777
Q ss_pred CCC
Q psy10308 126 APS 128 (225)
Q Consensus 126 FAs 128 (225)
||+
T Consensus 113 ~Ad 115 (510)
T KOG0144|consen 113 YAD 115 (510)
T ss_pred ccc
Confidence 764
No 44
>KOG0105|consensus
Probab=98.89 E-value=3.1e-09 Score=93.73 Aligned_cols=75 Identities=15% Similarity=0.200 Sum_probs=68.9
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC---CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN---HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~---~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
..+.-|+|-||++.|-|.++++||-+||+|..+.|-.. -.||||+|....+|++||..-|+-.+.+-.|.||||-
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 35667999999999999999999999999999999544 4599999999999999999999999999999999984
No 45
>KOG0117|consensus
Probab=98.85 E-value=4.9e-09 Score=100.91 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=69.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
|+|+||...++|++|..+|.+||.|.-++.-.+ ||||-|..|++|.||.+.+|+.+|.++-|.|.+|+.-+=++.-
T Consensus 262 LYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 262 LYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred eeeeccchhhhHHHHHHHHHhccceEEeecccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 899999999999999999999999999996655 9999999999999999999999999999999999976655443
No 46
>KOG0123|consensus
Probab=98.83 E-value=1e-08 Score=95.82 Aligned_cols=69 Identities=23% Similarity=0.353 Sum_probs=63.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEe----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhl----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
|+|+||.++||..+|.++|..||+|+.++| +-.+|+ ||.|++.++|.+||+.|||..+.+..|.|..+.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~ 151 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFE 151 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeecc
Confidence 999999999999999999999999999999 346999 999999999999999999999999997775444
No 47
>KOG0145|consensus
Probab=98.81 E-value=1.2e-08 Score=93.74 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=68.6
Q ss_pred ccce-EEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTW-VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~w-LvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
...| |+|-||.++.||.-|-.||.+||-|.++++ |.-|||+||.....+||+-||..|||..|+++.+.|.|-
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 3457 899999999999999999999999999998 344999999999999999999999999999999999996
Q ss_pred C
Q psy10308 128 S 128 (225)
Q Consensus 128 s 128 (225)
+
T Consensus 356 t 356 (360)
T KOG0145|consen 356 T 356 (360)
T ss_pred c
Confidence 5
No 48
>KOG0113|consensus
Probab=98.79 E-value=1.6e-08 Score=93.59 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=73.9
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
.-|+|.-|..+.+|++|+.-|..||+|+.++| +-.+|||||+|+...+-.+|.+..++.+|.+.-|+|++--.-
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgR 181 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGR 181 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecccc
Confidence 35999999999999999999999999999998 466999999999999999999999999999999999987666
Q ss_pred HHHHHHHh
Q psy10308 131 EVQSLLAH 138 (225)
Q Consensus 131 ev~~~~~~ 138 (225)
-|-.|+--
T Consensus 182 TvkgW~PR 189 (335)
T KOG0113|consen 182 TVKGWLPR 189 (335)
T ss_pred cccccccc
Confidence 66666543
No 49
>KOG0148|consensus
Probab=98.76 E-value=1.2e-08 Score=93.76 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=66.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
+.|-.|.++|+-++||+-|..||+|-+.+| ..+|||+||-|-.|+|||.||+.|||.=|+.++|+--.|+
T Consensus 65 vfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 65 VFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred EEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 788999999999999999999999999998 4669999999999999999999999999999999988875
No 50
>KOG0147|consensus
Probab=98.70 E-value=1.4e-08 Score=99.22 Aligned_cols=71 Identities=21% Similarity=0.300 Sum_probs=67.2
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
|+|.|||..|+|.+|+.+|.-||+|..+++ ++.+||+||.|..+|+|.+|...||+.+|.+..|.|-..+|
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 999999999999999999999999999998 46699999999999999999999999999999999877664
No 51
>KOG0117|consensus
Probab=98.66 E-value=5.7e-08 Score=93.73 Aligned_cols=85 Identities=19% Similarity=0.233 Sum_probs=68.6
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceec-CceEE--EeCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILG-NTTIF--AEAP 127 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg-~ttI~--aeFA 127 (225)
+=|+|-.|+-.+-|++|..||.+-|+|..+.| ..+||||||-|.+||||++||+.||+-+|- +..|- +..|
T Consensus 84 ~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 84 CEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred ceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 35999999999999999999999999999998 467999999999999999999999996553 33333 2222
Q ss_pred -------------ChHHHHHHHHhhcc
Q psy10308 128 -------------SDAEVQSLLAHLSA 141 (225)
Q Consensus 128 -------------se~ev~~~~~~~~~ 141 (225)
+++||-.=+.....
T Consensus 164 n~RLFiG~IPK~k~keeIlee~~kVte 190 (506)
T KOG0117|consen 164 NCRLFIGNIPKTKKKEEILEEMKKVTE 190 (506)
T ss_pred cceeEeccCCccccHHHHHHHHHhhCC
Confidence 47777666665544
No 52
>KOG0146|consensus
Probab=98.61 E-value=7.3e-08 Score=88.96 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=63.8
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhcc--ceecCce-EEEeCCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNN--CILGNTT-IFAEAPS 128 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~tt-I~aeFAs 128 (225)
-.|+|.=|..|-.|+++|.||.-||+|..+.+ ..+||.|||+|++.-||+.||.+||+ .+-+... ++|+||+
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 36888899999999999999999999999998 46699999999999999999999999 2333333 9999998
No 53
>KOG0110|consensus
Probab=98.60 E-value=3.9e-08 Score=98.46 Aligned_cols=77 Identities=19% Similarity=0.269 Sum_probs=72.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
++.|+|+||+.|++-.++|.||..||.|+++.| +-++||+||.|-|++||..|+++|..+-|.++.++.|.|++
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 568999999999999999999999999999999 35699999999999999999999999999999999999997
Q ss_pred HHH
Q psy10308 130 AEV 132 (225)
Q Consensus 130 ~ev 132 (225)
+++
T Consensus 693 d~~ 695 (725)
T KOG0110|consen 693 DNT 695 (725)
T ss_pred chH
Confidence 766
No 54
>KOG0121|consensus
Probab=98.60 E-value=9.5e-08 Score=80.17 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=69.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
.++-|+|.||..-+.|+.+.+||.+-|+|.-+.++|+ -||.||+|-+++||+.|.+-|++..|....|.|++-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4667999999999999999999999999999999877 699999999999999999999999999999999974
No 55
>KOG0110|consensus
Probab=98.53 E-value=1.7e-07 Score=93.91 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=67.2
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEe---------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL---------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhl---------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
|+|+||......++|+++|+.+|-|+++.| +|++||+||+|.+.+.|+.|+.+|++.+|.+..|.++|..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999999999999999999999999999977 5677999999999999999999999999999999999987
No 56
>KOG0124|consensus
Probab=98.50 E-value=8.6e-08 Score=91.46 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=67.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
.++-+||.-+..++.|+++|.-|.-||||+.+.+ .-++|||||+|.-.|-|+.|++.||+.+||++.|.|--+
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 5788999999999999999999999999999998 356999999999999999999999999999999987543
No 57
>KOG0131|consensus
Probab=98.39 E-value=2.8e-07 Score=80.70 Aligned_cols=83 Identities=23% Similarity=0.275 Sum_probs=71.9
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEE--e---c--CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFH--L---Y--LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfh--l---n--l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
.-.|.|.||-++|||.-|.++|..||+|+.-- + + ..+|++||-|++.|-+.+||.++|+..+.|+.|.|++|.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 34799999999999999999999999998732 2 2 458999999999999999999999999999999999997
Q ss_pred hH---------HHHHHHHh
Q psy10308 129 DA---------EVQSLLAH 138 (225)
Q Consensus 129 e~---------ev~~~~~~ 138 (225)
.+ ++.|.|+-
T Consensus 176 k~~~kg~~~g~~~~rllaa 194 (203)
T KOG0131|consen 176 KKDTKGERHGTAAERLLAA 194 (203)
T ss_pred ecCCCcccCCCHHHHHhhc
Confidence 43 45666654
No 58
>KOG0132|consensus
Probab=98.32 E-value=1.1e-06 Score=89.36 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=73.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC----hHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS----DAE 131 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs----e~e 131 (225)
+.-|.|..|+..|.|.+|+.+|.+||+|..+.|+..+|.|||+--.|++|+||+.+|++..+..++|.+.+|- .+|
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse 500 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSE 500 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcchh
Confidence 4458899999999999999999999999999999999999999999999999999999999999999887763 334
Q ss_pred HHHHHHh
Q psy10308 132 VQSLLAH 138 (225)
Q Consensus 132 v~~~~~~ 138 (225)
-..|-++
T Consensus 501 ~k~~wD~ 507 (894)
T KOG0132|consen 501 YKDYWDV 507 (894)
T ss_pred hhhhhhc
Confidence 4444444
No 59
>KOG0149|consensus
Probab=98.31 E-value=1.4e-06 Score=78.54 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=62.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
.-+.|+|-+|+++...++||..|.|||+|+...| .++|||+||.|.+.|-|++|.+.-| =+|.+++-.+.+|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence 3567999999999999999999999999999998 5789999999999999999998654 46677775555554
No 60
>KOG0124|consensus
Probab=98.30 E-value=1e-06 Score=84.21 Aligned_cols=69 Identities=13% Similarity=0.258 Sum_probs=64.5
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
+-|||.-+|+..+|+|+.-.|.-||+|+.++| .-+|||+||+|..+.--..||..||..+||++.++|-
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVG 285 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 285 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecc
Confidence 34999999999999999999999999999999 3569999999999999999999999999999998874
No 61
>KOG4206|consensus
Probab=98.30 E-value=1.4e-06 Score=77.45 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=69.3
Q ss_pred eEEecCCCCCcchhHHHH----HHHhhCCeeEEEec---CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC-h
Q psy10308 58 WVLLKNLTPQIDGSTLKT----LCVQHGPLQNFHLY---LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS-D 129 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~----Lc~qhGpV~tfhln---l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs-e 129 (225)
-|||.||.+.|.-++|+. ||.|||.|+++..- .-+|-|||-|+..+-|..|..+|+|..+.+.-+.+.+|. +
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 699999999999988888 99999999999974 449999999999999999999999999999999999998 5
Q ss_pred HHH
Q psy10308 130 AEV 132 (225)
Q Consensus 130 ~ev 132 (225)
+||
T Consensus 91 sdi 93 (221)
T KOG4206|consen 91 SDI 93 (221)
T ss_pred cch
Confidence 555
No 62
>KOG0109|consensus
Probab=98.28 E-value=9.4e-07 Score=82.05 Aligned_cols=73 Identities=19% Similarity=0.234 Sum_probs=65.5
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
+.-|+|.||+.++++..||.||.|||+|+.+-| -|-|+||--.+++.|+.||.+||+-.|-+..|.||-++--
T Consensus 2 ~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDI--vKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 2 PVKLFIGNLPREATEQELRSLFEQYGKVLECDI--VKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred ccchhccCCCcccchHHHHHHHHhhCceEeeee--ecccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 456899999999999999999999999998875 4558899999999999999999999999999999977643
No 63
>KOG0533|consensus
Probab=98.28 E-value=2.2e-06 Score=76.98 Aligned_cols=73 Identities=23% Similarity=0.234 Sum_probs=65.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
.+-|+|.||+..+.++||++||.+||++.-+-|+ .+.|.|-|-|+.+++|++||+.+||+.|.+.-|.+++..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 4569999999999999999999999988877773 447999999999999999999999999999988777665
No 64
>KOG0153|consensus
Probab=98.25 E-value=2.2e-06 Score=80.71 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=68.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeFAse 129 (225)
...-|+|.+|-.++.|.+||+-|-|||+|..+.+-+.++.|||.|.||+-|++|-..+ |..++.+.-|.+.....
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 3456999999999999999999999999999999999999999999999999999888 55788999999888765
No 65
>KOG0109|consensus
Probab=98.17 E-value=1.6e-06 Score=80.54 Aligned_cols=72 Identities=17% Similarity=0.326 Sum_probs=66.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
.+..|.|-||++.-...+||++|.+||||++.. .-++|+||.|+-.++|..||..||+.++.+.-+.|++-+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecd--ivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st 148 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECD--IVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST 148 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeee--eecceeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence 456799999999999999999999999999987 568899999999999999999999999999999998754
No 66
>KOG0123|consensus
Probab=98.15 E-value=2.2e-06 Score=80.29 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=70.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
....|+|+|+...++.+.|+.+|..||.|..+.| ++++|++||.|++.+||.+|...+|+-.+++..|.|..+-.
T Consensus 269 ~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr 348 (369)
T KOG0123|consen 269 QGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQR 348 (369)
T ss_pred cccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhh
Confidence 3457999999999999999999999999999988 57799999999999999999999999999999999888774
Q ss_pred HHH
Q psy10308 130 AEV 132 (225)
Q Consensus 130 ~ev 132 (225)
.+.
T Consensus 349 ~~~ 351 (369)
T KOG0123|consen 349 KED 351 (369)
T ss_pred hcc
Confidence 443
No 67
>KOG0127|consensus
Probab=98.12 E-value=3.4e-06 Score=83.51 Aligned_cols=71 Identities=10% Similarity=0.219 Sum_probs=67.5
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
-|.|++|++++..+.|.++|+++|||....+ ...|||+||.|+-.|+++.|++.+++..+.++.|.|++|.
T Consensus 7 TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 7 TLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred eEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 5899999999999999999999999999988 2669999999999999999999999999999999999996
No 68
>KOG0120|consensus
Probab=98.11 E-value=6.1e-06 Score=80.65 Aligned_cols=62 Identities=15% Similarity=0.299 Sum_probs=57.1
Q ss_pred hHHHHHHHhhCCeeEEEecCC---------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH
Q psy10308 71 STLKTLCVQHGPLQNFHLYLN---------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~---------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev 132 (225)
+++|+=|.+||.|..+.++.. -|..||+|.+.+.+++|+++|+|+++.|+|+++.+-+|+.-
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeDkY 494 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDEDKY 494 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHHHh
Confidence 789999999999999999433 79999999999999999999999999999999999988754
No 69
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.03 E-value=2.1e-05 Score=61.91 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=53.6
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhc-----cceecCceEEEeCCChHHHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLN-----NCILGNTTIFAEAPSDAEVQ 133 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn-----~c~Lg~ttI~aeFAse~ev~ 133 (225)
|.|.++.+.++-++|+++|.+||+|.=+.+....-.++|||.+.+.|++|++.+. .+.+.+..+.+++-+.+|=.
T Consensus 4 l~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGeeE~ 83 (105)
T PF08777_consen 4 LKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEEEE 83 (105)
T ss_dssp EEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHHHH
Confidence 6789999999999999999999999988888888899999999999999999883 35788888999999977766
Q ss_pred HHHHh
Q psy10308 134 SLLAH 138 (225)
Q Consensus 134 ~~~~~ 138 (225)
.|++.
T Consensus 84 ~Yw~k 88 (105)
T PF08777_consen 84 EYWKK 88 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 70
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.03 E-value=1.3e-05 Score=56.01 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=45.4
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQ 109 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi 109 (225)
.||.|.++++..-+.- +.-|.+||+|...++...+=.++|+|.++.+|++|.
T Consensus 2 ~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEV-LEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHH-HHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5999999998766554 458889999999999877889999999999999984
No 71
>KOG4212|consensus
Probab=98.03 E-value=1e-05 Score=78.77 Aligned_cols=72 Identities=14% Similarity=0.136 Sum_probs=64.8
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe---cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL---YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl---nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
+-.+=|+|+||+...+=..||+.|.++|.|+-..| ..++| +|||.+.|+|+.|+..||+..|.++.|.|+++
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 44566999999999999999999999999998888 24455 79999999999999999999999999999874
No 72
>KOG1190|consensus
Probab=97.97 E-value=1.5e-05 Score=76.78 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=69.6
Q ss_pred ceEEecCCCCC-cchhHHHHHHHhhCCeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHH
Q psy10308 57 TWVLLKNLTPQ-IDGSTLKTLCVQHGPLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQ 133 (225)
Q Consensus 57 ~wLvL~NLtpQ-ide~tLr~Lc~qhGpV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~ 133 (225)
.=|+|.||.++ |+.+.|.+||.-||+|+.++| +-.+-.|||.|++..+|+.|...|++..|-+..|+|.+-+--+|+
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 44788999987 899999999999999999997 556689999999999999999999999999999999998877763
No 73
>KOG4660|consensus
Probab=97.93 E-value=6.5e-06 Score=80.95 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=63.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-CceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-HSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
..-|+|-||..-|+++||+.+|..||+|..+...++ +|+.||+|=+..+|+.|.++||+|.+.+..|.
T Consensus 75 ~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 75 QGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 447999999999999999999999999999887654 99999999999999999999999999998876
No 74
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.88 E-value=5.9e-05 Score=59.19 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=47.3
Q ss_pred ceEEecCCCCCcchh----HHHHHHHhh-CCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 57 TWVLLKNLTPQIDGS----TLKTLCVQH-GPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 57 ~wLvL~NLtpQide~----tLr~Lc~qh-GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
+-|+|.||+...|.. .|+.|+.-. |+|+.+ ..+.|+|||.+.|-|++|++.|+|-++-+..|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 358999999998875 466677665 577665 47999999999999999999999999999999999984
No 75
>KOG4661|consensus
Probab=97.88 E-value=2e-05 Score=78.88 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=70.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe--c----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL--Y----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl--n----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
..-+|-|.+|..-.-..+|.+||.+||+|+-.+| | =.+-|.||..+|-+||.|.|..||.++|-+..|.||-|+
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 3457899999999999999999999999999997 3 228899999999999999999999999999999999998
Q ss_pred hHHHH
Q psy10308 129 DAEVQ 133 (225)
Q Consensus 129 e~ev~ 133 (225)
-+-+.
T Consensus 484 NEp~G 488 (940)
T KOG4661|consen 484 NEPGG 488 (940)
T ss_pred cCccc
Confidence 66443
No 76
>KOG0120|consensus
Probab=97.86 E-value=1.1e-05 Score=78.94 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=71.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||.--+.+.++++|-..||+++.|.| ++++|||||+|-+.--...||++|||..+++.+|+|.+|-.
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 346999999999999999999999999999998 47899999999999999999999999999999999999875
Q ss_pred HHHH
Q psy10308 130 AEVQ 133 (225)
Q Consensus 130 ~ev~ 133 (225)
.--+
T Consensus 369 g~~~ 372 (500)
T KOG0120|consen 369 GASN 372 (500)
T ss_pred cchh
Confidence 5433
No 77
>KOG1548|consensus
Probab=97.80 E-value=5e-05 Score=71.87 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=61.3
Q ss_pred ccceEEecCCCCCc----c-------hhHHHHHHHhhCCeeEEEec--CCCceEEEEeCCHHHHHHHHhhhccceecCce
Q psy10308 55 SGTWVLLKNLTPQI----D-------GSTLKTLCVQHGPLQNFHLY--LNHSLALAKYSTREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 55 ~~~wLvL~NLtpQi----d-------e~tLr~Lc~qhGpV~tfhln--l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt 121 (225)
...=++|+|+--.. + .++|+.=|.+||+|..+.|+ -..|+|.|+|.+.+||+.+|+.|+|--++++.
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRq 343 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQ 343 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceE
Confidence 34458889986542 1 35667779999999999998 56999999999999999999999999999999
Q ss_pred EEEeC
Q psy10308 122 IFAEA 126 (225)
Q Consensus 122 I~aeF 126 (225)
|.|++
T Consensus 344 l~A~i 348 (382)
T KOG1548|consen 344 LTASI 348 (382)
T ss_pred EEEEE
Confidence 99875
No 78
>KOG0146|consensus
Probab=97.80 E-value=1.4e-05 Score=74.24 Aligned_cols=76 Identities=11% Similarity=0.188 Sum_probs=68.1
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
...++|+|-+|+.|....+|..||.-||.|+..++ |.+|-|.||.|+...-|+.||.+|||.-|+=..+.|..-
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 35689999999999999999999999999999998 677999999999999999999999999888777777654
Q ss_pred Ch
Q psy10308 128 SD 129 (225)
Q Consensus 128 se 129 (225)
-.
T Consensus 363 RP 364 (371)
T KOG0146|consen 363 RP 364 (371)
T ss_pred Cc
Confidence 43
No 79
>KOG4208|consensus
Probab=97.79 E-value=6.5e-05 Score=66.72 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=72.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhh-CCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQH-GPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qh-GpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
...-++|..+..-..+..+...|.|| |.|.-|.+ +-++|||||+|.+.|-|+-|.+.||+--|.+.-+.+.|-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34568899999999999999999999 89999999 355999999999999999999999999999999999999
Q ss_pred ChH-HHHHHHH
Q psy10308 128 SDA-EVQSLLA 137 (225)
Q Consensus 128 se~-ev~~~~~ 137 (225)
.++ -|...+-
T Consensus 128 ppe~~v~~~~~ 138 (214)
T KOG4208|consen 128 PPEQKVEKNLK 138 (214)
T ss_pred Cchhhhhhhhh
Confidence 877 5544433
No 80
>KOG0106|consensus
Probab=97.79 E-value=2.1e-05 Score=69.79 Aligned_cols=70 Identities=11% Similarity=0.196 Sum_probs=64.8
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
=++|.+|.+++.+.+|..||+.||.|.++- +..||+||.|.+..+|..||-.||+.+|++-.++||+|..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~--mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDAD--MKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccce--eecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 378999999999999999999999998876 6788999999999999999999999999999999999874
No 81
>KOG0147|consensus
Probab=97.78 E-value=4.8e-05 Score=74.97 Aligned_cols=79 Identities=19% Similarity=0.174 Sum_probs=65.2
Q ss_pred cceEEecCCCCC-------cc---hhHHHHHHHhhCCeeEEEecCC-CceEEEEeCCHHHHHHHHhhhccceecCceEEE
Q psy10308 56 GTWVLLKNLTPQ-------ID---GSTLKTLCVQHGPLQNFHLYLN-HSLALAKYSTREEAIKAQGNLNNCILGNTTIFA 124 (225)
Q Consensus 56 ~~wLvL~NLtpQ-------id---e~tLr~Lc~qhGpV~tfhlnl~-~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~a 124 (225)
+.-++|+|.--- .| .+++.+-|.+||+|..++|... .|++||||.+-+.|.+|+.+|||-=+.+.+|.|
T Consensus 443 t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita 522 (549)
T KOG0147|consen 443 TQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITA 522 (549)
T ss_pred cHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEE
Confidence 344677775322 11 3788999999999999999644 499999999999999999999999999999999
Q ss_pred eCCChHHHHH
Q psy10308 125 EAPSDAEVQS 134 (225)
Q Consensus 125 eFAse~ev~~ 134 (225)
.|...+....
T Consensus 523 ~~~~~~~Y~~ 532 (549)
T KOG0147|consen 523 KYLPLERYHS 532 (549)
T ss_pred EEeehhhhhh
Confidence 9998776543
No 82
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.72 E-value=0.00015 Score=57.23 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=56.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEE-------------ecCCCceEEEEeCCHHHHHHHHhhhccceecCce
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFH-------------LYLNHSLALAKYSTREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfh-------------lnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt 121 (225)
...||+|=++++. .-..+-..|.+||+|+..+ ......-.-|+|+++.+|+||+.. ||++|.+..
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 4679999999888 6677788899999999986 445677889999999999999997 999998876
Q ss_pred -EEEeCCCh
Q psy10308 122 -IFAEAPSD 129 (225)
Q Consensus 122 -I~aeFAse 129 (225)
|.|...++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 66777744
No 83
>KOG0116|consensus
Probab=97.69 E-value=5.5e-05 Score=72.60 Aligned_cols=66 Identities=17% Similarity=0.321 Sum_probs=60.5
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCC------ceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNH------SLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~------G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
|+|+||+..++.+.|++.|.+||+|+...|.... .|+||.|.+.++++.||.+- =..|++.++.||
T Consensus 291 i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Ve 362 (419)
T KOG0116|consen 291 IFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVE 362 (419)
T ss_pred eEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEE
Confidence 9999999999999999999999999999885432 89999999999999999984 689999999987
No 84
>KOG1456|consensus
Probab=97.63 E-value=6.8e-05 Score=72.02 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=67.1
Q ss_pred EEecCCCCC--cchhHHHHHHHhhCCeeEEEecCCCce-EEEEeCCHHHHHHHHhhhccceecC--ceEEEeCCChHHHH
Q psy10308 59 VLLKNLTPQ--IDGSTLKTLCVQHGPLQNFHLYLNHSL-ALAKYSTREEAIKAQGNLNNCILGN--TTIFAEAPSDAEVQ 133 (225)
Q Consensus 59 LvL~NLtpQ--ide~tLr~Lc~qhGpV~tfhlnl~~G~-AlVrYstkeEA~kAi~aLn~c~Lg~--ttI~aeFAse~ev~ 133 (225)
|+++=|.|+ |+.+-|.++|.-+|+|+.+.|-...|+ |+|+|++.+-|++|..+|||-+|.. -||.+|||+.+-+.
T Consensus 123 Ll~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rln 202 (494)
T KOG1456|consen 123 LLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLN 202 (494)
T ss_pred EEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceee
Confidence 555666665 999999999999999999999766776 9999999999999999999976644 46999999998876
Q ss_pred HHHH
Q psy10308 134 SLLA 137 (225)
Q Consensus 134 ~~~~ 137 (225)
-|-+
T Consensus 203 V~kn 206 (494)
T KOG1456|consen 203 VQKN 206 (494)
T ss_pred eeec
Confidence 5544
No 85
>KOG4454|consensus
Probab=97.61 E-value=3.1e-05 Score=69.99 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=64.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
.--|+|.|+-..++|+.|.+||.|=|||+.+.|. ..+ ||||.|..---..-|+.-||+..|.+..|.++|-.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3458999999999999999999999999999993 225 99999999999999999999999999998888765
No 86
>KOG4206|consensus
Probab=97.57 E-value=0.00021 Score=63.78 Aligned_cols=72 Identities=17% Similarity=0.232 Sum_probs=65.3
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceec-CceEEEeCCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILG-NTTIFAEAPS 128 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg-~ttI~aeFAs 128 (225)
.-|+++||+.+.+.+-|.+||.||.=...+.+ ...+++|||+|.+.-+|.-|.++|.+|.+- ..++.+.||+
T Consensus 147 ~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 147 NILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred eEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 34788999999999999999999999999986 568999999999999999999999998777 7779998885
No 87
>KOG0415|consensus
Probab=97.56 E-value=0.00013 Score=69.91 Aligned_cols=73 Identities=12% Similarity=0.259 Sum_probs=66.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..+=|+|--|.|-.+.++|..||+.||+|+++.|- -+-=||||+|..++..++|.=-|+++-|...-|+|+|-
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45678999999999999999999999999999983 33569999999999999999999999999999999995
No 88
>KOG0106|consensus
Probab=97.45 E-value=7.1e-05 Score=66.43 Aligned_cols=72 Identities=21% Similarity=0.283 Sum_probs=64.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
..+=|+|.|++..+...+|.+.|.++|++ +.|+- ..+++||+|++.++|.+|+..|++.++.++-|.++.+.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~-~~~~~-~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEV-TYVDA-RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCC-chhhh-hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 44558999999999999999999999999 66654 88999999999999999999999999999999995554
No 89
>KOG1548|consensus
Probab=97.41 E-value=0.0003 Score=66.74 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=65.1
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeE--------EEecCC-----CceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQN--------FHLYLN-----HSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~t--------fhlnl~-----~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
..|||.||+..|+.+.+.++|.+.|=|.. ++||.+ +|=|||.|..+|-.+.||+.||+-.|.+.+|.
T Consensus 135 t~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~r 214 (382)
T KOG1548|consen 135 TSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLR 214 (382)
T ss_pred ceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEE
Confidence 46999999999999999999999997753 455644 99999999999999999999999999999999
Q ss_pred EeCCC
Q psy10308 124 AEAPS 128 (225)
Q Consensus 124 aeFAs 128 (225)
|+-|.
T Consensus 215 VerAk 219 (382)
T KOG1548|consen 215 VERAK 219 (382)
T ss_pred Eehhh
Confidence 99775
No 90
>KOG4212|consensus
Probab=97.35 E-value=0.0012 Score=64.65 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=70.0
Q ss_pred eEEecCCCCCcchhHHHHHHHhh-CCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQH-GPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAE 131 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qh-GpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~e 131 (225)
.++|+|++.+..=.+|.+||.+. |.|.-+.| ...||.|+|+|++.|-++||.+.||-.++.+++|+|+=-.++|
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q 125 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQ 125 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchh
Confidence 38999999999999999999765 66666666 4569999999999999999999999999999999998877777
Q ss_pred HHHHHHh
Q psy10308 132 VQSLLAH 138 (225)
Q Consensus 132 v~~~~~~ 138 (225)
-.+|-+-
T Consensus 126 ~~~~~~~ 132 (608)
T KOG4212|consen 126 RDQYGRI 132 (608)
T ss_pred hhhhhhe
Confidence 7777543
No 91
>KOG0151|consensus
Probab=97.34 E-value=0.0003 Score=71.74 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=65.8
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe---------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEE
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL---------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFA 124 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl---------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~a 124 (225)
...++|||.||.|+++|..|-..|..||||..+++ -..+=.+||-|..+.+|+.|.+.|++..+.+..+..
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 46789999999999999999999999999999998 234788999999999999999999998888777665
Q ss_pred eCC
Q psy10308 125 EAP 127 (225)
Q Consensus 125 eFA 127 (225)
-|+
T Consensus 252 gWg 254 (877)
T KOG0151|consen 252 GWG 254 (877)
T ss_pred ccc
Confidence 555
No 92
>KOG1457|consensus
Probab=97.30 E-value=0.00067 Score=61.80 Aligned_cols=73 Identities=16% Similarity=0.265 Sum_probs=64.0
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEe-cCCCc------eEEEEeCCHHHHHHHHhhhccceec---CceEEEeCC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-YLNHS------LALAKYSTREEAIKAQGNLNNCILG---NTTIFAEAP 127 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-nl~~G------~AlVrYstkeEA~kAi~aLn~c~Lg---~ttI~aeFA 127 (225)
-|+|.+|+..|.--+|+.||..|-=-...+| +.+++ +|||-|.++.+|+.|..+|||+++. ..|+++|||
T Consensus 36 TLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 36 TLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred eeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 5999999999999999999999988888887 34444 8999999999999999999998765 566999999
Q ss_pred ChH
Q psy10308 128 SDA 130 (225)
Q Consensus 128 se~ 130 (225)
+-+
T Consensus 116 KSN 118 (284)
T KOG1457|consen 116 KSN 118 (284)
T ss_pred hcC
Confidence 854
No 93
>KOG2416|consensus
Probab=97.26 E-value=0.00024 Score=71.16 Aligned_cols=84 Identities=21% Similarity=0.217 Sum_probs=71.3
Q ss_pred cccceEEecCCCCCcchhHHHHHHHh-hCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccc--eecCce-EEEeCCCh
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQ-HGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNC--ILGNTT-IFAEAPSD 129 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~q-hGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c--~Lg~tt-I~aeFAse 129 (225)
..++-|+|+||+--++...|+.|..+ -|.|..|-|..-+--.||.|+|.+||..-+.||||+ ...|.. |+|+|+.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~ 521 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRA 521 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecch
Confidence 45667999999999999999999994 556667777777888899999999999999999997 456655 99999999
Q ss_pred HHHHHHHH
Q psy10308 130 AEVQSLLA 137 (225)
Q Consensus 130 ~ev~~~~~ 137 (225)
+|+.+-..
T Consensus 522 deld~hr~ 529 (718)
T KOG2416|consen 522 DELDKHRN 529 (718)
T ss_pred hHHHHHhc
Confidence 99975443
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.24 E-value=0.0011 Score=63.47 Aligned_cols=83 Identities=18% Similarity=0.255 Sum_probs=66.8
Q ss_pred EEecCCCCCcc-hh---HH--HHHHHhhCCeeEEEecCC-------Cc--eEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 59 VLLKNLTPQID-GS---TL--KTLCVQHGPLQNFHLYLN-------HS--LALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 59 LvL~NLtpQid-e~---tL--r~Lc~qhGpV~tfhlnl~-------~G--~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
+||-+|.|.+- |+ .| .+.|.|||.|+.+.||.. .+ =++|.|.++|||+.+|++.++..+.++-|.
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence 56777777754 44 33 578999999999999632 23 349999999999999999999999999999
Q ss_pred EeCCChHHHHHHHHhhcc
Q psy10308 124 AEAPSDAEVQSLLAHLSA 141 (225)
Q Consensus 124 aeFAse~ev~~~~~~~~~ 141 (225)
|.+-+--=-..||.-.+-
T Consensus 197 atYGTTKYCtsYLRn~~C 214 (480)
T COG5175 197 ATYGTTKYCTSYLRNAVC 214 (480)
T ss_pred eecCchHHHHHHHcCCCC
Confidence 999888777777765443
No 95
>KOG4285|consensus
Probab=96.95 E-value=0.0032 Score=59.16 Aligned_cols=79 Identities=24% Similarity=0.259 Sum_probs=64.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCce-EEEeCCChHHHH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTT-IFAEAPSDAEVQ 133 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt-I~aeFAse~ev~ 133 (225)
...|+-|=++.| -+.+-|-.+|.+||.|+.......--+..|||.+|-||+||+.. |+..|.+.. |-|+=..|-+|.
T Consensus 196 ~D~WVTVfGFpp-g~~s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksvi 273 (350)
T KOG4285|consen 196 ADTWVTVFGFPP-GQVSIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSVI 273 (350)
T ss_pred ccceEEEeccCc-cchhHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHHh
Confidence 468998888865 56788899999999999988875555789999999999999987 777777776 778877777775
Q ss_pred HH
Q psy10308 134 SL 135 (225)
Q Consensus 134 ~~ 135 (225)
.=
T Consensus 274 ~~ 275 (350)
T KOG4285|consen 274 NG 275 (350)
T ss_pred cc
Confidence 43
No 96
>KOG4211|consensus
Probab=96.74 E-value=0.003 Score=62.10 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=67.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
...-|.|++|++..++++|+++|..- .|.+|.+. ...|=|||++.+-||++||.+. |...++++.|.|--+.-+
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 34568999999999999999999876 47777774 4589999999999999999985 778889999998777544
Q ss_pred HHHHHHHhhc
Q psy10308 131 EVQSLLAHLS 140 (225)
Q Consensus 131 ev~~~~~~~~ 140 (225)
|+...|.+.+
T Consensus 87 e~d~~~~~~g 96 (510)
T KOG4211|consen 87 EADWVMRPGG 96 (510)
T ss_pred cccccccCCC
Confidence 4444444443
No 97
>KOG1190|consensus
Probab=96.73 E-value=0.0028 Score=61.56 Aligned_cols=71 Identities=27% Similarity=0.420 Sum_probs=64.1
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCe-eEEEec-CCCceEEEEeCCHHHHHHHHhhhccceecCc-eEEEeCCC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPL-QNFHLY-LNHSLALAKYSTREEAIKAQGNLNNCILGNT-TIFAEAPS 128 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV-~tfhln-l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t-tI~aeFAs 128 (225)
-|-+.|+++.++|++|+++|.++|-. +.|++. -+|=+|||...+.|||..|.-.||+-.|+.. .|+|.|-+
T Consensus 416 tlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 416 TLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred heeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 47899999999999999999999876 788876 4789999999999999999999999999888 59999864
No 98
>KOG2202|consensus
Probab=96.64 E-value=0.001 Score=60.71 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=53.9
Q ss_pred hHHHHHHH-hhCCeeEEEe--cCC---CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH
Q psy10308 71 STLKTLCV-QHGPLQNFHL--YLN---HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 71 ~tLr~Lc~-qhGpV~tfhl--nl~---~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev 132 (225)
++|.+-|. +||.|.+++| |+. .|.++|+|..-|+|++|.+.||+-=+.++.|.++|....+-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~ 150 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDF 150 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCch
Confidence 45556666 9999999976 554 99999999999999999999999999999999999886544
No 99
>KOG4205|consensus
Probab=96.63 E-value=0.0014 Score=60.89 Aligned_cols=69 Identities=10% Similarity=0.135 Sum_probs=54.9
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
..-|.|-+|.++.+++.||+-|.+||.|+.+.+ ...+||.||.|++.++..+++..- ...|.+..|.++
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~-~h~~dgr~ve~k 80 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR-THKLDGRSVEPK 80 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc-ccccCCccccce
Confidence 347999999999999999999999999999998 467999999999888766666542 244455444443
No 100
>KOG2314|consensus
Probab=96.45 E-value=0.0055 Score=61.54 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=60.1
Q ss_pred cceEEecCCCCCcch-------hHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccc-eecCceE
Q psy10308 56 GTWVLLKNLTPQIDG-------STLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNC-ILGNTTI 122 (225)
Q Consensus 56 ~~wLvL~NLtpQide-------~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c-~Lg~ttI 122 (225)
-+-|||.|++ ++.. .-|..+|+++|+|.++.+. -.+||+|++|.+..+|++|++.|||. -..|.|.
T Consensus 58 D~vVvv~g~P-vV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAP-VVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCc-ccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3457777765 4444 3456789999999999984 34999999999999999999999995 5678888
Q ss_pred EEeCCChHHHHHHHH
Q psy10308 123 FAEAPSDAEVQSLLA 137 (225)
Q Consensus 123 ~aeFAse~ev~~~~~ 137 (225)
.|..-+ |+++|..
T Consensus 137 ~v~~f~--d~eky~s 149 (698)
T KOG2314|consen 137 FVRLFK--DFEKYES 149 (698)
T ss_pred Eeehhh--hHHHhcC
Confidence 776443 3444443
No 101
>KOG1457|consensus
Probab=96.39 E-value=0.0038 Score=56.96 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=49.9
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC--CceEEEEeCCHHHHHHHHhhhcccee
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN--HSLALAKYSTREEAIKAQGNLNNCIL 117 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~--~G~AlVrYstkeEA~kAi~aLn~c~L 117 (225)
+..+-|+|.||.++.+|++|+.||..|--..-++|--. .=+||+.|+..|+|..|.-.|.|.-|
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 45566999999999999999999999976555555322 45788888888888888877776433
No 102
>KOG4205|consensus
Probab=96.09 E-value=0.0076 Score=56.05 Aligned_cols=80 Identities=10% Similarity=0.131 Sum_probs=66.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
.--|+|..|.+.+++.+|++-|.|||.|.+..+. ..+||+||-|.+.+-..|+.. .+-.+|.+..+.|.-|-.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 3468999999999999999999999999998884 449999999998875555443 355799999999999999
Q ss_pred HHHHHHH
Q psy10308 130 AEVQSLL 136 (225)
Q Consensus 130 ~ev~~~~ 136 (225)
-|+...-
T Consensus 176 k~~~~~~ 182 (311)
T KOG4205|consen 176 KEVMQST 182 (311)
T ss_pred hhhcccc
Confidence 8886543
No 103
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.05 E-value=0.016 Score=50.07 Aligned_cols=64 Identities=13% Similarity=0.103 Sum_probs=49.0
Q ss_pred chhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhc--cceecCceEEEeCCChHHH
Q psy10308 69 DGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLN--NCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 69 de~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn--~c~Lg~ttI~aeFAse~ev 132 (225)
....|+.+|.+|+++.+|..=.+=+=.+|-|.+.+.|++|...|| +..+.+..|.+.|+....+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~~ 73 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTPI 73 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS-
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccccc
Confidence 357899999999999999986777778999999999999999999 8999999999999964444
No 104
>KOG4676|consensus
Probab=95.98 E-value=0.012 Score=57.16 Aligned_cols=84 Identities=17% Similarity=0.245 Sum_probs=67.4
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC---------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN---------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~---------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
=|-|.||.|+++-+.+++||.--|+|..+.||.+ .-++||+|.+-+.+..||---|-+.++-..|++-++.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~~ 88 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYGD 88 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecCC
Confidence 5788999999999999999999999999999753 7799999999999999987666566666668877777
Q ss_pred hHHHHH-HHHhhcc
Q psy10308 129 DAEVQS-LLAHLSA 141 (225)
Q Consensus 129 e~ev~~-~~~~~~~ 141 (225)
+-+--+ +|..+..
T Consensus 89 ~~~p~r~af~~l~~ 102 (479)
T KOG4676|consen 89 EVIPDRFAFVELAD 102 (479)
T ss_pred CCCccHHHHHhcCc
Confidence 443333 5655543
No 105
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.97 E-value=0.061 Score=42.41 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=54.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhhC--CeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCce----EEEe
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHG--PLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTT----IFAE 125 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhG--pV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt----I~ae 125 (225)
-|.|+||+...+.+.|.++..++- ..-=|.| ..+.|||||-|.+.+.|.+-.++.||+...... ..+.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 488999999999999999988763 2222223 244999999999999999999999998776332 5566
Q ss_pred CCC
Q psy10308 126 APS 128 (225)
Q Consensus 126 FAs 128 (225)
+|.
T Consensus 83 yAr 85 (97)
T PF04059_consen 83 YAR 85 (97)
T ss_pred hhH
Confidence 664
No 106
>KOG4211|consensus
Probab=95.94 E-value=0.017 Score=57.02 Aligned_cols=79 Identities=18% Similarity=0.133 Sum_probs=66.8
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeE---EEe---cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQN---FHL---YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~t---fhl---nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
.-|.|++|+.-.+++++.++|+--=.|-+ |.+ ...-|=|||+|++.|.|++|.+. |+-.++.+.|.|--++-+
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRA 182 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHH
Confidence 35889999999999999999974433322 333 35689999999999999999988 778999999999999999
Q ss_pred HHHHHH
Q psy10308 131 EVQSLL 136 (225)
Q Consensus 131 ev~~~~ 136 (225)
||.++-
T Consensus 183 e~~~~~ 188 (510)
T KOG4211|consen 183 EVKRAA 188 (510)
T ss_pred HHHhhc
Confidence 999986
No 107
>KOG2193|consensus
Probab=95.42 E-value=0.014 Score=57.30 Aligned_cols=71 Identities=18% Similarity=0.158 Sum_probs=58.0
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc-ceecCceEEEeCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN-CILGNTTIFAEAP 127 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~-c~Lg~ttI~aeFA 127 (225)
+-|++.||.|++.-++|+.+|..+--=.+=.+-+.+|||||-|..-.-|.|||+.|++ +.|-+.-+.++.-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence 4689999999999999999999872222222235599999999999999999999999 6888888777643
No 108
>KOG1996|consensus
Probab=94.90 E-value=0.072 Score=50.44 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=56.2
Q ss_pred Ccc---hhHHHHHHHhhCCeeEEEecCC-------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHH
Q psy10308 67 QID---GSTLKTLCVQHGPLQNFHLYLN-------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQS 134 (225)
Q Consensus 67 Qid---e~tLr~Lc~qhGpV~tfhlnl~-------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~ 134 (225)
|+| |..+.+-|.+||.|.++.|... .=-.||+|.-.++|.||+--|||--+|++++.|-|-++++...
T Consensus 294 evd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 294 EVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSN 371 (378)
T ss_pred cccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhh
Confidence 455 3567788999999998887322 2236999999999999999999999999999999999887643
No 109
>KOG3152|consensus
Probab=94.87 E-value=0.018 Score=53.08 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=51.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-----------Cce-------EEEEeCCHHHHHHHHhhhcccee
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-----------HSL-------ALAKYSTREEAIKAQGNLNNCIL 117 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-----------~G~-------AlVrYstkeEA~kAi~aLn~c~L 117 (225)
+.=|||+||+|.++..-||+|+.+||.|--++|-.. .|+ +-|+|.++.-|.+--..||+..+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 456899999999999999999999999999998321 111 34677778877666667788888
Q ss_pred cCce
Q psy10308 118 GNTT 121 (225)
Q Consensus 118 g~tt 121 (225)
++..
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8753
No 110
>KOG4307|consensus
Probab=94.62 E-value=0.068 Score=55.22 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=60.9
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEe---c---CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL---Y---LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA 126 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl---n---l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF 126 (225)
=|.+.|++..++-+|+-++|..|-++-+-.+ | .--|=+.|-|.++|||..|..-|++..|.+++|.+.+
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4677999999999999999999998876554 2 3378899999999999999999999999999988765
No 111
>KOG4574|consensus
Probab=94.54 E-value=0.024 Score=59.24 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=52.6
Q ss_pred cchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCce--EEEeCCChHH
Q psy10308 68 IDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTT--IFAEAPSDAE 131 (225)
Q Consensus 68 ide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt--I~aeFAse~e 131 (225)
..-+.|.+||.+||.|+....=.+--.|+|.|.+.+-|.+|.++|+|.++--+. ..|-||+-.+
T Consensus 310 ~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 310 LTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred chHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 566899999999999999987555667999999999999999999996544333 7778887554
No 112
>KOG4210|consensus
Probab=94.50 E-value=0.021 Score=52.20 Aligned_cols=70 Identities=16% Similarity=0.217 Sum_probs=63.5
Q ss_pred EE-ecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 59 VL-LKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 59 Lv-L~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
++ +.||...+++++|+..|..+|.|..+++ ...+|+|+|+++..+++.+|+.. ..-.+++.+|++++.+.
T Consensus 187 ~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 187 IFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEP 263 (285)
T ss_pred ceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCC
Confidence 55 8999999999999999999999999998 34599999999999999999998 77889999999998774
No 113
>KOG1456|consensus
Probab=94.08 E-value=0.12 Score=50.40 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=66.3
Q ss_pred cceEEecCCCC-CcchhHHHHHHHhhCCeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHH
Q psy10308 56 GTWVLLKNLTP-QIDGSTLKTLCVQHGPLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAE 131 (225)
Q Consensus 56 ~~wLvL~NLtp-Qide~tLr~Lc~qhGpV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~e 131 (225)
..=+.|-+|.. .|..+.|-+||-+||+|..+++ -..-|.|+|+-.+..+.++|++.||+..|-+.+|.|.|-+.+-
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 34567888876 5889999999999999999997 4668999999999999999999999999999999998877543
No 114
>KOG4209|consensus
Probab=93.76 E-value=0.088 Score=46.96 Aligned_cols=71 Identities=13% Similarity=0.092 Sum_probs=59.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..-++|.||..-..-+.+...|.-.|.|..+.+ +-.+|||+|.|.+++.+++|++ ||+-.|-+..|.|.-.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 346888999998887779999999999964433 2358999999999999999999 9999999999888754
No 115
>KOG0226|consensus
Probab=92.06 E-value=0.058 Score=49.92 Aligned_cols=67 Identities=10% Similarity=0.213 Sum_probs=45.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
|.-..|-.++..+-|...|.+|-.-+-.++ +-++||.||-|.+..++..|...||+.-++++-|.+.
T Consensus 193 IfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 193 IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred eecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 333445555555555555554433322222 5669999999999999999999999988888776543
No 116
>KOG1995|consensus
Probab=91.91 E-value=0.18 Score=48.10 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=63.3
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeE--------EEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceE
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQN--------FHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTI 122 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~t--------fhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI 122 (225)
.-|+|-+|..-+++..+.+.|.|-|.|+. ++||++ ||-|+|-|.+...|+.||.-.++..+.+.+|
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~i 146 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTI 146 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCc
Confidence 35888999999999999999999998763 444433 9999999999999999999999999999999
Q ss_pred EEeCCCh
Q psy10308 123 FAEAPSD 129 (225)
Q Consensus 123 ~aeFAse 129 (225)
.|-+|..
T Consensus 147 kvs~a~~ 153 (351)
T KOG1995|consen 147 KVSLAER 153 (351)
T ss_pred hhhhhhh
Confidence 9988874
No 117
>KOG0112|consensus
Probab=91.52 E-value=0.2 Score=52.78 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=64.6
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCce--EEEeCCChH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTT--IFAEAPSDA 130 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt--I~aeFAse~ 130 (225)
+-+.+|-+=.+...|..+|..||+|.++-+.-.+=||+|-|.+.+-|+.|...|-|..|++.. |.|+||++-
T Consensus 458 ~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 458 LQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred eccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 566777777889999999999999999887777889999999999999999999999998877 999999864
No 118
>KOG4019|consensus
Probab=90.99 E-value=0.16 Score=44.87 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=77.2
Q ss_pred EEecCCCC-----CcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCc-eEEEeCCChHHH
Q psy10308 59 VLLKNLTP-----QIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNT-TIFAEAPSDAEV 132 (225)
Q Consensus 59 LvL~NLtp-----Qide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t-tI~aeFAse~ev 132 (225)
|++.+|+. +++-.....||.||-+..+|.+-...+...|-|+.++-|+.|...||...|.+. .+...||..--+
T Consensus 13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 13 IIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHP 92 (193)
T ss_pred eeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCc
Confidence 44455544 467788899999999999999999999999999999999999999999988888 599999987666
Q ss_pred HHHHHhhccccCCC----CCCCCCCCCCccC
Q psy10308 133 QSLLAHLSATANNN----NNNNGGTGGWARG 159 (225)
Q Consensus 133 ~~~~~~~~~~~~~~----~~~~g~~~~~~~~ 159 (225)
...-|+++++..-- .++..+.-||...
T Consensus 93 ~~~~q~L~pP~~eKqFLISPPaSPPvgWe~~ 123 (193)
T KOG4019|consen 93 ESNSQYLQPPEPEKQFLISPPASPPVGWEPI 123 (193)
T ss_pred cccccccCCCChhhceeecCCCCCCCCCccc
Confidence 55557776663110 1233334578763
No 119
>KOG4307|consensus
Probab=90.97 E-value=0.56 Score=48.83 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=66.0
Q ss_pred eEEecCCCCCcchhHHHHHHHhhC-CeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHG-PLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSL 135 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhG-pV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~ 135 (225)
=|.|.||+.-+...|+|++|.--- |=--+|| .=..|=|||-|+|.|+|..|... ++-+|.+..+..=.-+.+|.|..
T Consensus 4 IIRLqnLP~tAga~DIR~FFSGL~IPdGgVHIIGGe~GeaFI~FsTDeDARlaM~k-dr~~i~g~~VrLlLSSksEmq~v 82 (944)
T KOG4307|consen 4 IIRLQNLPMTAGASDIRTFFSGLKIPDGGVHIIGGEEGEAFIGFSTDEDARLAMTK-DRLMIHGAEVRLLLSSKSEMQSV 82 (944)
T ss_pred EEEecCCcccccchHHHHhhcccccCCCceEEecccccceEEEecccchhhhhhhh-cccceecceEEEEeccHHHHHHH
Confidence 478899999999999999998321 2224564 56699999999999999999876 67788888888888899999887
Q ss_pred HHhhc
Q psy10308 136 LAHLS 140 (225)
Q Consensus 136 ~~~~~ 140 (225)
++-.-
T Consensus 83 Ie~~r 87 (944)
T KOG4307|consen 83 IEARR 87 (944)
T ss_pred HHHHH
Confidence 76543
No 120
>KOG1365|consensus
Probab=90.87 E-value=0.62 Score=45.66 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=71.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEE---Ee-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF---HL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tf---hl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..-|.|++|+.++..+++-+++.+|-.-+.| |+ +.-.|=|||.+.+.|.|..|-..-|...-..+.|.|-=+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 3468999999999999999999999887776 44 244899999999999998888887766667888999999
Q ss_pred ChHHHHHHHHhh
Q psy10308 128 SDAEVQSLLAHL 139 (225)
Q Consensus 128 se~ev~~~~~~~ 139 (225)
+-||.++-|.+.
T Consensus 360 S~eeln~vL~~g 371 (508)
T KOG1365|consen 360 SVEELNEVLSGG 371 (508)
T ss_pred cHHHHHHHHhcC
Confidence 999999988764
No 121
>KOG0115|consensus
Probab=90.58 E-value=0.23 Score=45.91 Aligned_cols=64 Identities=17% Similarity=0.228 Sum_probs=54.3
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-----CceEEEEeCCHHHHHHHHhhhccceecCce
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-----HSLALAKYSTREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-----~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt 121 (225)
-|+|+||.+-+..+.|+.-|.+||+|-.-.++.+ -|-.+|+|..+-+|.+|..+.+.--|+.++
T Consensus 33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~ 101 (275)
T KOG0115|consen 33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTT 101 (275)
T ss_pred eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCC
Confidence 4899999999999999999999999988777433 567799999999999999999664444444
No 122
>KOG1855|consensus
Probab=89.91 E-value=0.3 Score=48.06 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=49.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEe-cC------------------CCceEEEEeCCHHHHHHHHhhhcc
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-YL------------------NHSLALAKYSTREEAIKAQGNLNN 114 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-nl------------------~~G~AlVrYstkeEA~kAi~aLn~ 114 (225)
-||+-||+..-.-+-|.+||..+|.|..+.| -. .+--|||+|...+-|.||..-||.
T Consensus 233 tivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 233 TIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred eEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 4888999999999999999999999999998 11 166799999999999999998853
No 123
>KOG0128|consensus
Probab=87.66 E-value=0.083 Score=55.11 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=59.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe----c--CCCceEEEEeCCHHHHHHHHhhhccceecCceEEE
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL----Y--LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFA 124 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl----n--l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~a 124 (225)
..-++++||++.+.+++|...|..+|-|..+.+ | .-+|+|++.|-..++|.+||.-.+.|.++..-+.+
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 345788999999999999999999999887765 3 33999999999999999999999999988666544
No 124
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=87.22 E-value=2 Score=36.49 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=43.6
Q ss_pred hHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHH
Q psy10308 71 STLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQ 133 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~ 133 (225)
.+|-+.|.+||.|+-+++.- +-.+|-|.+-+-|-+|.+ |++..+++.+|.+..-+.+-+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDWLK 110 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-------
T ss_pred HHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccHHH
Confidence 57888999999999777543 688999999887766654 6999999999999887766553
No 125
>KOG2193|consensus
Probab=87.00 E-value=0.066 Score=52.77 Aligned_cols=78 Identities=21% Similarity=0.271 Sum_probs=68.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-cCC--CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-YLN--HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-nl~--~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev 132 (225)
+.-|-|+|+.+|.--+-|.-|..+||.|.+|-. |.+ .-+.-|.|+++++++-||.-||+--|.+.++.+-+-.++++
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQN 159 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhhh
Confidence 345889999999999999999999999999985 433 55566889999999999999999999999999988888887
Q ss_pred H
Q psy10308 133 Q 133 (225)
Q Consensus 133 ~ 133 (225)
+
T Consensus 160 ~ 160 (584)
T KOG2193|consen 160 A 160 (584)
T ss_pred h
Confidence 5
No 126
>KOG2068|consensus
Probab=86.89 E-value=0.28 Score=46.39 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=61.1
Q ss_pred EecCCCCC-cchhHHH--HHHHhhCCeeEEEecCCC---------ceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 60 LLKNLTPQ-IDGSTLK--TLCVQHGPLQNFHLYLNH---------SLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 60 vL~NLtpQ-ide~tLr--~Lc~qhGpV~tfhlnl~~---------G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
++-+|+++ .||+.|. .-|.|||.|..+.++.+. =-++|-|...|||..||+.-|+.++.+++|.|.|.
T Consensus 81 yvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g 160 (327)
T KOG2068|consen 81 YVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG 160 (327)
T ss_pred hhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence 44555555 4566664 579999999999986431 23899999999999999999999999999888888
Q ss_pred ChHHHHHHHHh
Q psy10308 128 SDAEVQSLLAH 138 (225)
Q Consensus 128 se~ev~~~~~~ 138 (225)
+--.-..||.-
T Consensus 161 ttkycs~~l~~ 171 (327)
T KOG2068|consen 161 TTKYCSFYLRN 171 (327)
T ss_pred CCcchhHHhhh
Confidence 76655555553
No 127
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=86.03 E-value=1.9 Score=35.35 Aligned_cols=84 Identities=18% Similarity=0.178 Sum_probs=52.1
Q ss_pred ceE-EecCC----CCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHH--HhhhccceecCceEEEeCCCh
Q psy10308 57 TWV-LLKNL----TPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKA--QGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 57 ~wL-vL~NL----tpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kA--i~aLn~c~Lg~ttI~aeFAse 129 (225)
.+| +|+++ +-.|.=.+||++|.+.| ..++.-|+.-|..+++ +..++|+-+ |+.+=... -+..+-|-.=+.
T Consensus 3 ~yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~SGNvvf~-~~~~~~~l~~~ie~~l~~~-fG~~v~v~vrs~ 79 (137)
T PF08002_consen 3 TYIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQSGNVVFE-SDRDPAELAAKIEKALEER-FGFDVPVIVRSA 79 (137)
T ss_dssp EEEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETTTTEEEEE-ESS-HHHHHHHHHHHHHHH--TT---EEEEEH
T ss_pred eEEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEeeCCEEEe-cCCChHHHHHHHHHHHHHh-cCCCeEEEEeeH
Confidence 464 66777 45688999999999998 7889999999999999 555544433 22211123 333566667789
Q ss_pred HHHHHHHHhhcccc
Q psy10308 130 AEVQSLLAHLSATA 143 (225)
Q Consensus 130 ~ev~~~~~~~~~~~ 143 (225)
+|+.+++++-+-+.
T Consensus 80 ~el~~i~~~nPf~~ 93 (137)
T PF08002_consen 80 EELRAIIAANPFPW 93 (137)
T ss_dssp HHHHHHHTT--GGG
T ss_pred HHHHHHHHHCCCcc
Confidence 99999999876553
No 128
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=85.79 E-value=0.72 Score=39.34 Aligned_cols=73 Identities=12% Similarity=0.141 Sum_probs=49.8
Q ss_pred ceEEecCCCCCcchhHHHHHHHh-hCCe---eEEE--ec------CCCceEEEEeCCHHHHHHHHhhhccceecCc----
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQ-HGPL---QNFH--LY------LNHSLALAKYSTREEAIKAQGNLNNCILGNT---- 120 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~q-hGpV---~tfh--ln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t---- 120 (225)
.-|||++|+|-++|+.+...+.. +++- .-|+ .. ....-|+|.|.+.+++..=.+.+|+.++-+.
T Consensus 8 ~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~ 87 (176)
T PF03467_consen 8 TKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNE 87 (176)
T ss_dssp -EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-E
T ss_pred ceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCC
Confidence 47999999999999999987766 6666 3343 21 2256799999999999999999998655332
Q ss_pred e-EEEeCCCh
Q psy10308 121 T-IFAEAPSD 129 (225)
Q Consensus 121 t-I~aeFAse 129 (225)
. -.||||.-
T Consensus 88 ~~~~VE~Apy 97 (176)
T PF03467_consen 88 YPAVVEFAPY 97 (176)
T ss_dssp EEEEEEE-SS
T ss_pred cceeEEEcch
Confidence 2 56777764
No 129
>KOG0128|consensus
Probab=85.25 E-value=0.44 Score=49.96 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=57.8
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA 126 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF 126 (225)
.-+.|+|+++|-+-+.|+.||..||++....+ ...+|.|+|-|.+-.+|.++....+...+-...+.+..
T Consensus 737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 34788999999999999999999999999976 34599999999999999999887765555444455554
No 130
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=84.50 E-value=1.3 Score=35.65 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=26.7
Q ss_pred EEecCCCCC---------cchhHHHHHHHhhCCeeEEEecC---CCceEEEEeCCH
Q psy10308 59 VLLKNLTPQ---------IDGSTLKTLCVQHGPLQNFHLYL---NHSLALAKYSTR 102 (225)
Q Consensus 59 LvL~NLtpQ---------ide~tLr~Lc~qhGpV~tfhlnl---~~G~AlVrYstk 102 (225)
.+|.|+.-+ ++.+.|++.|.+|.|+..-+|+- ++|+|+|+|..-
T Consensus 11 gIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~ 66 (116)
T PF03468_consen 11 GIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKD 66 (116)
T ss_dssp EEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SS
T ss_pred EEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCC
Confidence 577888443 56789999999999998888853 379999999874
No 131
>KOG1365|consensus
Probab=84.39 E-value=0.56 Score=46.00 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=65.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeE-----EEe----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQN-----FHL----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~t-----fhl----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
|.+++|+....+.++.++|.++=||.. +.+ +.--|=|||-|...++|++|... |...+|-+.|.+==-+-
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFRSTa 242 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFRSTA 242 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHHHhH
Confidence 456999999999999999987766652 222 35589999999999999999876 77888888888877778
Q ss_pred HHHHHHHHhhc
Q psy10308 130 AEVQSLLAHLS 140 (225)
Q Consensus 130 ~ev~~~~~~~~ 140 (225)
.||+.-|+.--
T Consensus 243 aEvqqvlnr~~ 253 (508)
T KOG1365|consen 243 AEVQQVLNREV 253 (508)
T ss_pred HHHHHHHHhhc
Confidence 99988877654
No 132
>KOG2135|consensus
Probab=78.97 E-value=1.2 Score=44.41 Aligned_cols=61 Identities=21% Similarity=0.210 Sum_probs=51.1
Q ss_pred hhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHH
Q psy10308 70 GSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAE 131 (225)
Q Consensus 70 e~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~e 131 (225)
-.+|..-|++||.|.++.+...-=-|+|-|.++-||-+|-+. ++.+|.|+-|.+-+-+++-
T Consensus 387 ~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 387 IADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred HhhhhhhhhhcCccccccccCchhhheeeeeccccccchhcc-ccceecCceeEEEEecCCc
Confidence 477888899999999999976666789999999999777654 8889999998887766543
No 133
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=78.87 E-value=10 Score=25.69 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=43.3
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCH----HHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR----EEAIKAQG 110 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstk----eEA~kAi~ 110 (225)
+.|.|++=+-....++.-..+.=-|.++++++..+.+-|.|... ++..++|.
T Consensus 2 ~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 2 FKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH
Confidence 46778888888999999999999999999999999999999865 44444444
No 134
>KOG0105|consensus
Probab=75.26 E-value=12 Score=33.94 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=54.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceec
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILG 118 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg 118 (225)
+.+=++|++|++-.+=.+|.+-..+-|.|--..++.+ |+.+|.|-.+|+-+-|+..|+..++.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeeehhhHHHHHHhhcccccc
Confidence 4555999999999999999999999999987777655 79999999999999999999875443
No 135
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=71.64 E-value=9.4 Score=28.46 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=32.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHhhhccc-eecCceEEEeCCChHHHHHHHH
Q psy10308 89 YLNHSLALAKYSTREEAIKAQGNLNNC-ILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 89 nl~~G~AlVrYstkeEA~kAi~aLn~c-~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.+-.||.||+.+-.++.-.++..+.++ -+.+..=....-+++||.+|+.
T Consensus 56 plfpGYvFv~~~~~~~~~~~i~~~~~v~~~v~~~~~p~~v~~~e~~~l~~ 105 (106)
T smart00738 56 PLFPGYIFVEADLEDEVWTAIRGTPGVRGFVGGGGKPTPVPDDEIEKILK 105 (106)
T ss_pred ecCCCEEEEEEEeCCcHHHHHhcCCCccEECCCCCeeeECCHHHHHHHhh
Confidence 344599999998777778888888774 2222111123356999999875
No 136
>KOG2591|consensus
Probab=70.97 E-value=4.5 Score=41.37 Aligned_cols=76 Identities=13% Similarity=0.164 Sum_probs=56.2
Q ss_pred eEEecCCCCCcchhHHHHHHHh--hCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc--ceecCceEEEeCCChHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQ--HGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN--CILGNTTIFAEAPSDAEVQ 133 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~q--hGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~ttI~aeFAse~ev~ 133 (225)
=++|+-|.+-.-++.+..||.- -=+++++.+--+. .=||.|.+..+|++|.+.|-. .++-+.-|+|.|-. |.
T Consensus 177 IvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-nWyITfesd~DAQqAykylreevk~fqgKpImARIKa---in 252 (684)
T KOG2591|consen 177 IVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-NWYITFESDTDAQQAYKYLREEVKTFQGKPIMARIKA---IN 252 (684)
T ss_pred EEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhhhhh---hh
Confidence 3566888888888999999973 2366776653333 348999999999999999954 47778888888765 54
Q ss_pred HHHH
Q psy10308 134 SLLA 137 (225)
Q Consensus 134 ~~~~ 137 (225)
.||.
T Consensus 253 tf~p 256 (684)
T KOG2591|consen 253 TFFP 256 (684)
T ss_pred cccC
Confidence 5543
No 137
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=69.94 E-value=13 Score=29.46 Aligned_cols=53 Identities=17% Similarity=0.214 Sum_probs=40.6
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN 114 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~ 114 (225)
..|+ ++.+.--.||.+||.-||.|.--- ++.-.|||.-..+|.|..|...++.
T Consensus 12 Fhlt-FPkeWK~~DI~qlFspfG~I~VsW--i~dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 12 FHLT-FPKEWKTSDIYQLFSPFGQIYVSW--INDTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEE---TT--HHHHHHHCCCCCCEEEEE--ECTTEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEe-CchHhhhhhHHHHhccCCcEEEEE--EcCCcEEEEeecHHHHHHHHHHhcc
Confidence 3445 788888999999999999986655 4556899999999999999888863
No 138
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=66.51 E-value=22 Score=26.20 Aligned_cols=51 Identities=16% Similarity=0.305 Sum_probs=40.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhh----CCeeEEEec-CCCceEEEEeCCHHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQH----GPLQNFHLY-LNHSLALAKYSTREEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qh----GpV~tfhln-l~~G~AlVrYstkeEA~kAi~aL 112 (225)
-|.|++|. +++-+++...|..| +|. +|- .+--.+-|-|.+.+.|.+|..+|
T Consensus 7 avhirGvd-~lsT~dI~~y~~~y~~~~~~~---~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD-ELSTDDIKAYFSEYFDEEGPF---RIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC-CCCHHHHHHHHHHhcccCCCc---eEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 57888874 68999999999999 543 442 45556788999999999999876
No 139
>PF14268 YoaP: YoaP-like
Probab=65.63 E-value=5.4 Score=27.66 Aligned_cols=36 Identities=28% Similarity=0.234 Sum_probs=29.1
Q ss_pred EEEEeCCHHHHHHHHhhhcc-ceecCce-EEEeCCChH
Q psy10308 95 ALAKYSTREEAIKAQGNLNN-CILGNTT-IFAEAPSDA 130 (225)
Q Consensus 95 AlVrYstkeEA~kAi~aLn~-c~Lg~tt-I~aeFAse~ 130 (225)
-+|+.+|+|+|+.|-...+. |.+.+-. |..++-+|.
T Consensus 3 ~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~eils~~ 40 (44)
T PF14268_consen 3 KLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEILSEK 40 (44)
T ss_pred EEEEeccHHHHhcCCCceeEEEEEECCEEEEeeccChh
Confidence 48999999999999999888 5665555 888887764
No 140
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=65.51 E-value=7.5 Score=28.28 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=33.6
Q ss_pred CcchhHHHHHHHhhCCeeEEEe---cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 67 QIDGSTLKTLCVQHGPLQNFHL---YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 67 Qide~tLr~Lc~qhGpV~tfhl---nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
.++..+|-.++.+.+.|-.-.+ ....-++||+-... .|++++++|++..+.+..|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4566666666666655544322 34466788888766 599999999999999999999876
No 141
>KOG0112|consensus
Probab=64.33 E-value=2 Score=45.60 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=64.1
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..+.-|++.||...+.+..+|-.|.+||.|-.+-| +...-|+||.|-..+-+-+|...|-+..|++.++.+-+-
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 34556899999999999999999999999988877 445678999999999999999999998888888776665
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=62.45 E-value=20 Score=31.22 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=51.8
Q ss_pred cccceEEe----cCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceE
Q psy10308 54 WSGTWVLL----KNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTI 122 (225)
Q Consensus 54 ~~~~wLvL----~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI 122 (225)
..++-||| +|+.++-|-..+..--+.||||+.+.+ -.+=.|+|-|.+-.-|=+|+.|.+. ...++.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-cCCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 34566666 788888888888888899999999986 2355789999999999999999875 3334433
No 143
>PRK11901 hypothetical protein; Reviewed
Probab=61.81 E-value=9.6 Score=36.34 Aligned_cols=52 Identities=23% Similarity=0.428 Sum_probs=37.7
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCC--Cc---eEEE--EeCCHHHHHHHHhhhcc
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN--HS---LALA--KYSTREEAIKAQGNLNN 114 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~--~G---~AlV--rYstkeEA~kAi~aLn~ 114 (225)
|-|..++ ++++|+.+-.+|+ +.++++|.. +| |.|| .|.+++||..||+.|--
T Consensus 248 LQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 248 LQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred EEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 5555443 4788888888886 677888744 34 4444 69999999999999853
No 144
>KOG0129|consensus
Probab=61.04 E-value=15 Score=36.97 Aligned_cols=67 Identities=13% Similarity=0.147 Sum_probs=48.3
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe--------cCCCc---eEEEEeCCHHHHHHHHhhhccceecCceE
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL--------YLNHS---LALAKYSTREEAIKAQGNLNNCILGNTTI 122 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl--------nl~~G---~AlVrYstkeEA~kAi~aLn~c~Lg~ttI 122 (225)
..+.-|.|.+|++.|+|+.|...|.+||+|+.==- -..+| |+|+=|..-. +-++-|+.|..+....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~---sV~~Ll~aC~~~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDER---SVQSLLSACSEGEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchH---HHHHHHHHHhhcccce
Confidence 35667999999999999999999999999853111 14477 9999996433 2233347788777663
Q ss_pred E
Q psy10308 123 F 123 (225)
Q Consensus 123 ~ 123 (225)
.
T Consensus 334 y 334 (520)
T KOG0129|consen 334 Y 334 (520)
T ss_pred E
Confidence 3
No 145
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=59.95 E-value=55 Score=27.90 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=56.7
Q ss_pred cchhHHHHHHHhhCCeeEEE-e-c------CCCceEEEEeCC----HHHHHHHHhhhcc--ceecCceEEEeCCC-hHHH
Q psy10308 68 IDGSTLKTLCVQHGPLQNFH-L-Y------LNHSLALAKYST----REEAIKAQGNLNN--CILGNTTIFAEAPS-DAEV 132 (225)
Q Consensus 68 ide~tLr~Lc~qhGpV~tfh-l-n------l~~G~AlVrYst----keEA~kAi~aLn~--c~Lg~ttI~aeFAs-e~ev 132 (225)
.|+..+..+..|--++++++ + + ..|-.||||... +.|..+-.+..+. +.+...++.+|+.- +++|
T Consensus 52 ~~~~~i~qi~kQl~KLidV~~V~~~~~~~~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~iE~tG~~~ki 131 (161)
T PRK11895 52 GDEQVIEQITKQLNKLIDVLKVVDLTEEAHVERELALVKVRASGENRAEILRLADIFRAKIVDVTPESLTIEVTGDSDKI 131 (161)
T ss_pred CCHHHHHHHHHHHhccccEEEEEecCCcchhheEEEEEEEECCcccHHHHHHHHHHhCCEEEEecCCEEEEEEeCCHHHH
Confidence 47889999999988887776 2 2 349999999875 4555555555555 46777889999987 7889
Q ss_pred HHHHHhhccc
Q psy10308 133 QSLLAHLSAT 142 (225)
Q Consensus 133 ~~~~~~~~~~ 142 (225)
..|++.+.+-
T Consensus 132 ~~~~~~l~~~ 141 (161)
T PRK11895 132 DAFIDLLRPY 141 (161)
T ss_pred HHHHHHhhhc
Confidence 9999988664
No 146
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=58.46 E-value=81 Score=24.08 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=41.0
Q ss_pred EEecCCCCC-----c---c-hhHHHHHHHhhC-CeeEEEe--cCCCceEEEEeCCHHHHHHHHhhhcc
Q psy10308 59 VLLKNLTPQ-----I---D-GSTLKTLCVQHG-PLQNFHL--YLNHSLALAKYSTREEAIKAQGNLNN 114 (225)
Q Consensus 59 LvL~NLtpQ-----i---d-e~tLr~Lc~qhG-pV~tfhl--nl~~G~AlVrYstkeEA~kAi~aLn~ 114 (225)
|+|.++|+| . + .+.++.++.++| +|++|++ +..--++.++..+.+.|.++.-++..
T Consensus 2 i~l~~~T~~g~~~~~~~~~R~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 2 IILARYTPEGAKGIKDSPDRAEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred EEEEEeCHHHHHHHhhcHHHHHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 566777776 1 1 455777888875 7888886 55678889999999988888776644
No 147
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=56.60 E-value=25 Score=25.42 Aligned_cols=45 Identities=9% Similarity=0.052 Sum_probs=39.9
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstk 102 (225)
-|.|.++|=.-+..++.+--..-..|..+++++..|.+.|.|++.
T Consensus 5 ~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 5 TLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 467788888888888888888888999999999999999999993
No 148
>PRK10905 cell division protein DamX; Validated
Probab=56.03 E-value=16 Score=34.89 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=37.2
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecC--CCce--EEE---EeCCHHHHHHHHhhhc
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL--NHSL--ALA---KYSTREEAIKAQGNLN 113 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl--~~G~--AlV---rYstkeEA~kAi~aLn 113 (225)
.|-|.-+. ++++|+.+-.+| .|.++++|. .+|- -.| .|.+++||++||+.|-
T Consensus 249 TLQL~A~S---s~~~l~~fakKl-gL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 249 TLQLSSSS---NYDNLNGWAKKE-NLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred EEEEEecC---CHHHHHHHHHHc-CCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCC
Confidence 35555444 468899998999 477788763 4553 222 4899999999999884
No 149
>KOG4210|consensus
Probab=54.21 E-value=8.9 Score=35.24 Aligned_cols=73 Identities=10% Similarity=0.067 Sum_probs=55.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
...-+.+.++...|++...-.++-++|.+....+ -..+|+..+.|..++++.+|....-.-++....+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 3456889999999999999999999997776654 356999999999999999998864433444444444443
No 150
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.86 E-value=29 Score=30.26 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=38.5
Q ss_pred CCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh
Q psy10308 63 NLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL 112 (225)
Q Consensus 63 NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL 112 (225)
.|.+.|.++.|+++|.-||=|+.|.-+-- .+-|.+.|...+|.+.+
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~E~D~----V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFEEYDL----VAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEeeeccE----EEEeccHHHHHHHHHHH
Confidence 57889999999999999999999994321 55689999999998765
No 151
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=51.79 E-value=64 Score=22.66 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=32.3
Q ss_pred hHHHHHHHhhCCeeEEEecCC--CceEEEEeCCHHHHHHHHhhhc
Q psy10308 71 STLKTLCVQHGPLQNFHLYLN--HSLALAKYSTREEAIKAQGNLN 113 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~--~G~AlVrYstkeEA~kAi~aLn 113 (225)
..+.+++.++| +.-..+.=. -+..|+=+.++++|++++++|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777788899 777777655 6777777888888888888774
No 152
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=49.76 E-value=1.2e+02 Score=27.33 Aligned_cols=65 Identities=17% Similarity=0.194 Sum_probs=39.0
Q ss_pred hHHHHHHHhhCCeeEEEecCCC-ceEEEEeCCHHHHHHHHhhhcccee---c----CceEEEeCCChHHHHHHHHhh
Q psy10308 71 STLKTLCVQHGPLQNFHLYLNH-SLALAKYSTREEAIKAQGNLNNCIL---G----NTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~~-G~AlVrYstkeEA~kAi~aLn~c~L---g----~ttI~aeFAse~ev~~~~~~~ 139 (225)
+.|.+.+.+++.+ ++...+ .|.+|++...++..+.... +++.+ . ..-|++.|..++|+.+|++-+
T Consensus 277 ~~l~~~L~~~~~~---~~~~~~g~f~~~~~~~~~~~~~~l~~-~gv~v~~~~~~~~~~~lRis~~~~e~~~~l~~al 349 (354)
T PRK04635 277 ARLQAALSMYGGA---KVLEGNGNYVLAKFDDVDAVFKALWD-AGIVARAYKDPRLANCIRFSFSNRAETDKLIGLI 349 (354)
T ss_pred HHHHHHHHhCCCc---eECCCCCcEEEEECCCHHHHHHHHHH-CCEEEEECCCCCCCCeEEEEeCCHHHHHHHHHHH
Confidence 3455556666533 333333 3778888755444433322 45433 1 235999999999999999865
No 153
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=49.72 E-value=63 Score=26.55 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=43.5
Q ss_pred eEEecCCCCC---cchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 58 WVLLKNLTPQ---IDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 58 wLvL~NLtpQ---ide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
.|-|+..+.. .+...+.+.-.+.| |.-..+.++.+..+|||++.|+-.+|.+.|.. .|++..++
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~g-I~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~-~L~~~y~V 103 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANG-IHIKSITPENDSLLIRFDSPEQSAAAKEVLDR-TLPHGYII 103 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCC-CCcceEEeeCCEEEEEECCHHHHHHHHHHHHH-HcCCCCEE
Confidence 4666655333 56677777766665 33334556778999999999999999999974 44554433
No 154
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=49.53 E-value=39 Score=27.73 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=38.7
Q ss_pred CCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc-ceecCceEEEeCCCh-HHHHHHHHhhc
Q psy10308 81 GPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN-CILGNTTIFAEAPSD-AEVQSLLAHLS 140 (225)
Q Consensus 81 GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~-c~Lg~ttI~aeFAse-~ev~~~~~~~~ 140 (225)
|....+...+-.||.||+.+..++.-..|..+.+ +-+.+..-....-++ +|++.|++...
T Consensus 47 g~~~~~~~plfPgYvFv~~~~~~~~~~~i~~~~gv~~~v~~~~~p~~I~~~~ei~~l~~~~~ 108 (172)
T TIGR00922 47 GKKKVVERKIFPGYVLVKMDLTDVSWHLVKNTPGVTGFVGSGGKPKALSEDEEVKNILNALE 108 (172)
T ss_pred CEEEEEEEecCCcEEEEEEEeCccHhHHhhcCCCccEEcCcCCeeeccCCHHHHHHHHHHhh
Confidence 3333444456689999998876677777888777 333332212334567 99999887543
No 155
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=46.30 E-value=21 Score=26.52 Aligned_cols=20 Identities=10% Similarity=0.200 Sum_probs=18.1
Q ss_pred hHHHHHHHhhCCeeEEEecC
Q psy10308 71 STLKTLCVQHGPLQNFHLYL 90 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl 90 (225)
.+||+.|++.|+|..+.+|+
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999999999964
No 156
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=46.17 E-value=1.4e+02 Score=25.38 Aligned_cols=74 Identities=19% Similarity=0.267 Sum_probs=55.5
Q ss_pred chhHHHHHHHhhCCeeEEE-e-c------CCCceEEEEeCC----HHHHHHHHhhhcc--ceecCceEEEeCCC-hHHHH
Q psy10308 69 DGSTLKTLCVQHGPLQNFH-L-Y------LNHSLALAKYST----REEAIKAQGNLNN--CILGNTTIFAEAPS-DAEVQ 133 (225)
Q Consensus 69 de~tLr~Lc~qhGpV~tfh-l-n------l~~G~AlVrYst----keEA~kAi~aLn~--c~Lg~ttI~aeFAs-e~ev~ 133 (225)
|+..++.|..|--++++++ + + ..|-.||||-.. +.|..+-.+..+. +++...++.+|+.- ++++.
T Consensus 52 d~~~i~qi~kQl~Kli~V~~V~~~~~~~~v~rEl~LiKv~~~~~~r~~i~~i~~~f~a~ivdv~~~~~~ie~tG~~~ki~ 131 (157)
T TIGR00119 52 DDKVLEQITKQLNKLVDVIKVSDLTESAIVERELCLVKVSAPGEGRDEIIRLTNIFRGRIVDVSPDSYTVEVTGDSDKID 131 (157)
T ss_pred CHHHHHHHHHHHhcCccEEEEEecCCCcceeeEEEEEEEECCccCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHH
Confidence 6889999999988888776 3 2 348999999865 4555555555555 46777779999876 88899
Q ss_pred HHHHhhccc
Q psy10308 134 SLLAHLSAT 142 (225)
Q Consensus 134 ~~~~~~~~~ 142 (225)
.|++-+.+-
T Consensus 132 ~~~~~l~~~ 140 (157)
T TIGR00119 132 AFLELLRPF 140 (157)
T ss_pred HHHHHhhhc
Confidence 999988653
No 157
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=45.85 E-value=26 Score=34.85 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=46.3
Q ss_pred eEEecCCCCCcchhHHHHHHHhhC------CeeEEEec---------CC-Cc--eEEEEeCCHHHHHHHHhhhcc
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHG------PLQNFHLY---------LN-HS--LALAKYSTREEAIKAQGNLNN 114 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhG------pV~tfhln---------l~-~G--~AlVrYstkeEA~kAi~aLn~ 114 (225)
=|+|-+=+|=|+.+||++|...|- -|++|++. ++ .| .+.|+.++-.|++|.|+..|.
T Consensus 99 vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt~~~~dP~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNt 173 (460)
T COG1207 99 VLVLYGDVPLITAETLEELLAAHPAHGAAATVLTAELDDPTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINT 173 (460)
T ss_pred EEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEEEEcCCCCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEee
Confidence 578899999999999999999884 48899982 11 23 788999999999998887664
No 158
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=44.96 E-value=39 Score=27.85 Aligned_cols=53 Identities=19% Similarity=0.117 Sum_probs=35.4
Q ss_pred EecCCCceEEEEeCCHHHHHHHHhhhccc-eecC-ceEEEeCCChHHHHHHHHhh
Q psy10308 87 HLYLNHSLALAKYSTREEAIKAQGNLNNC-ILGN-TTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 87 hlnl~~G~AlVrYstkeEA~kAi~aLn~c-~Lg~-ttI~aeFAse~ev~~~~~~~ 139 (225)
...+-.||.||+.+-.++.-..+..+.++ -+.+ ..=....-+++|+..|+...
T Consensus 60 ~~plfpgYvFv~~~~~~~~~~~i~~~~gv~~~v~~~g~~p~~i~~~ei~~l~~~~ 114 (181)
T PRK05609 60 ERKFFPGYVLVKMVMTDESWHLVRNTPGVTGFVGSTGSKPTPLSEKEVEKILKQL 114 (181)
T ss_pred EEecCCcEEEEEEEeCccHhHHhhcCCCeEEEecCCCCCcccCCHHHHHHHHHHh
Confidence 33567999999998766778888888774 2222 11112334789999998743
No 159
>PF01900 RNase_P_Rpp14: Rpp14/Pop5 family; InterPro: IPR002759 This family contains proteins found in some eukaryotes and archaebacteria that are related to yeast ribonuclease P. This enzyme is essential for tRNA processing generating 5'-termini of mature tRNA molecules []. tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule associated with at least eight protein subunits, hPop1, Rpp14, Rpp20, Rpp25, Rpp29, Rpp30, Rpp38, and Rpp40 [].; GO: 0004540 ribonuclease activity, 0008033 tRNA processing; PDB: 2CZV_D 2AV5_B.
Probab=44.74 E-value=32 Score=26.05 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=36.4
Q ss_pred hHHHHHHHhhCC------eeEEEecCCCceEEEEeCCHHHHHHHHhhhcc-ceecCceEEE
Q psy10308 71 STLKTLCVQHGP------LQNFHLYLNHSLALAKYSTREEAIKAQGNLNN-CILGNTTIFA 124 (225)
Q Consensus 71 ~tLr~Lc~qhGp------V~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~-c~Lg~ttI~a 124 (225)
+.++++|.++|= +.-++.+...+.++||.. ++..++...+|-- ..+.+..+.+
T Consensus 29 ~a~~~l~G~~G~~~~~~~l~v~~~~~~t~~~IiR~~-r~~~~~v~~aL~~i~~i~~~~~~~ 88 (107)
T PF01900_consen 29 EAVKELFGDFGAAAISPSLQVKYFNPKTGIGIIRCR-REYYKKVWSALTLITSINGRPCSI 88 (107)
T ss_dssp HHHHHHCHHHHHHHH--EEE--EEETTTTEEEEEEE-GGGHHHHHHHHHT--EETTEEEEE
T ss_pred HHHHHHcChhhhhhcccccceeeEcCCCCEEEEEEc-chhhhHHHHHHHHHhccCCceEEE
Confidence 456778888872 444556788899999998 7778888888766 4666655443
No 160
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=44.57 E-value=37 Score=28.36 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=31.2
Q ss_pred EEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhhc
Q psy10308 95 ALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 95 AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~ 140 (225)
.+|-|.+.++.+++++.|.. .++...|.+++.++++|+++++...
T Consensus 23 V~~~~~~~~~~~~~~~~l~~-~~~~~~~~~D~~~~~~v~~~~~~~~ 67 (241)
T PF13561_consen 23 VILTDRNEEKLADALEELAK-EYGAEVIQCDLSDEESVEALFDEAV 67 (241)
T ss_dssp EEEEESSHHHHHHHHHHHHH-HTTSEEEESCTTSHHHHHHHHHHHH
T ss_pred EEEEeCChHHHHHHHHHHHH-HcCCceEeecCcchHHHHHHHHHHH
Confidence 35556777776666666643 2233459999999999999988753
No 161
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=44.36 E-value=49 Score=27.30 Aligned_cols=21 Identities=5% Similarity=0.289 Sum_probs=18.3
Q ss_pred CceEEEeCCChHHHHHHHHhh
Q psy10308 119 NTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 119 ~ttI~aeFAse~ev~~~~~~~ 139 (225)
+.++.++-+++..|..|++..
T Consensus 97 g~~l~~~~~d~~~i~~Fi~~~ 117 (130)
T PF11303_consen 97 GRQLKLDSADDPRIKQFIRKY 117 (130)
T ss_pred CCEeecCcCCHHHHHHHHHHH
Confidence 567888999999999999965
No 162
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=43.89 E-value=1e+02 Score=29.64 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=40.8
Q ss_pred EecCCCCCcchhHHHHHHHh-hCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQ-HGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~q-hGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
+|.++++.. +-+..+ ||||+.+ ++|++.|||.+ .+|.... +-+..+--.+.+++.+|.++
T Consensus 372 vl~~~~~~~-----~~~~eE~FgPvl~v----------~~~~~~~eai~---~~n~~~~-gLs~~vft~d~~~a~~~~~~ 432 (481)
T cd07141 372 VFSDVTDDM-----RIAKEEIFGPVQQI----------FKFKTIDEVIE---RANNTTY-GLAAAVFTKDIDKAITFSNA 432 (481)
T ss_pred EEecCCCCC-----hhhhccccCCeEEE----------EeeCCHHHHHH---HHhCCCc-cceEEEECCCHHHHHHHHHh
Confidence 667777653 222333 9999874 57888777654 4444443 34555555667888999888
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 433 l~~G 436 (481)
T cd07141 433 LRAG 436 (481)
T ss_pred cCcC
Confidence 7543
No 163
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=43.31 E-value=89 Score=29.60 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=42.3
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.++. +++ ..||||+.+ ++|++.|||.+ .+|.+. .+-+..+---+++.+.+|.++
T Consensus 347 tvl~~v~~~~~i--~~~--E~fgPvl~v----------~~~~~~~eai~---~~n~~~-~gL~~~v~t~d~~~~~~~~~~ 408 (456)
T cd07110 347 TVFADVPTDSRI--WRE--EIFGPVLCV----------RSFATEDEAIA---LANDSE-YGLAAAVISRDAERCDRVAEA 408 (456)
T ss_pred EEEecCCCCChH--hhC--CCcCCeEEE----------EecCCHHHHHH---HHhCCC-CCceEEEECCCHHHHHHHHHh
Confidence 467788876431 111 458999875 57888887654 445443 334455555678888999998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 409 l~~G 412 (456)
T cd07110 409 LEAG 412 (456)
T ss_pred CCcc
Confidence 8643
No 164
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=42.30 E-value=87 Score=26.51 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=28.7
Q ss_pred chhHHHHHHHhhC-CeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhc
Q psy10308 69 DGSTLKTLCVQHG-PLQNFHL-YLNHSLALAKYSTREEAIKAQGNLN 113 (225)
Q Consensus 69 de~tLr~Lc~qhG-pV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn 113 (225)
+.++++.++.++| |++ ++- +-..|....++.+.+|++++++.+.
T Consensus 111 ~~~~~~~~~~~~~~p~v-vKP~~g~~g~gv~~i~~~~~l~~~~~~~~ 156 (277)
T TIGR00768 111 SPEEALKLIEEIGFPVV-LKPVFGSWGRLVSLARDKQAAETLLEHFE 156 (277)
T ss_pred CHHHHHHHHHhcCCCEE-EEECcCCCCCceEEEcCHHHHHHHHHHHH
Confidence 4567778888888 655 332 3344555666778888877776654
No 165
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.84 E-value=66 Score=28.24 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=39.2
Q ss_pred cCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh
Q psy10308 62 KNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL 112 (225)
Q Consensus 62 ~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL 112 (225)
-+|...|.++.|.+||.-||=|+.|. +.-. .+=|-.++.-.+|.+.+
T Consensus 117 v~l~~~i~~erl~ei~E~~gvI~Efe---e~~~-V~I~Gdke~Ik~aLKe~ 163 (169)
T PF09869_consen 117 VKLKKPIQEERLQEISEWHGVIFEFE---EDDK-VVIEGDKERIKKALKEF 163 (169)
T ss_pred EecCccchHHHHHHHHHHhceeEEec---CCcE-EEEeccHHHHHHHHHHH
Confidence 47889999999999999999999993 3333 66799999999998754
No 166
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=41.26 E-value=60 Score=30.26 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=44.3
Q ss_pred cchhHHHHHHHhhCCeeEEEecCCCce--EEEEeCCHHHHHHHHhhhcc-ceecCceEEE-----eCCChHHHHHHHHhh
Q psy10308 68 IDGSTLKTLCVQHGPLQNFHLYLNHSL--ALAKYSTREEAIKAQGNLNN-CILGNTTIFA-----EAPSDAEVQSLLAHL 139 (225)
Q Consensus 68 ide~tLr~Lc~qhGpV~tfhlnl~~G~--AlVrYstkeEA~kAi~aLn~-c~Lg~ttI~a-----eFAse~ev~~~~~~~ 139 (225)
.++++-+.|..-==+|+-.|+++..|= ..-...|.+||.+-++++-. |.--+..|++ .+++.+|++.+|+++
T Consensus 158 f~~e~A~~M~~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t 237 (268)
T PF09370_consen 158 FNEEQARAMAEAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNT 237 (268)
T ss_dssp -SHHHHHHHHHHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-
T ss_pred cCHHHHHHHHHcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcC
Confidence 567888888866668999999888553 34457788998888877755 5444555333 489999999999997
Q ss_pred c
Q psy10308 140 S 140 (225)
Q Consensus 140 ~ 140 (225)
.
T Consensus 238 ~ 238 (268)
T PF09370_consen 238 K 238 (268)
T ss_dssp T
T ss_pred C
Confidence 5
No 167
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=41.13 E-value=1e+02 Score=23.77 Aligned_cols=73 Identities=14% Similarity=0.100 Sum_probs=42.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
++|.+=+.-|-.+..+.|..+.+.++-+ +..+ .+.+.+++.++.|......=+.+..++.+++++++++++
T Consensus 3 ~lItGa~~giG~~~a~~l~~~g~~~v~~-~~r~--------~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 73 (167)
T PF00106_consen 3 VLITGASSGIGRALARALARRGARVVIL-TSRS--------EDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEE 73 (167)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEE-EESS--------CHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHhcCceEEEE-eeec--------ccccccccccccccccccccccccccccccccccccccc
Confidence 4555555556666666666652323211 1111 335555555566653222223488899999999999998
Q ss_pred hc
Q psy10308 139 LS 140 (225)
Q Consensus 139 ~~ 140 (225)
..
T Consensus 74 ~~ 75 (167)
T PF00106_consen 74 VI 75 (167)
T ss_dssp HH
T ss_pred cc
Confidence 76
No 168
>KOG0156|consensus
Probab=40.89 E-value=20 Score=35.18 Aligned_cols=48 Identities=17% Similarity=0.272 Sum_probs=30.6
Q ss_pred eEEecCCCCCcc---hhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHH
Q psy10308 58 WVLLKNLTPQID---GSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEA 105 (225)
Q Consensus 58 wLvL~NLtpQid---e~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA 105 (225)
|=+|-||+.=.. -..|+.|-.+||||.+++++...=+.+.-|+..+||
T Consensus 34 lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~~Vviss~~~akE~ 84 (489)
T KOG0156|consen 34 LPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVPVVVISSYEAAKEV 84 (489)
T ss_pred CCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCceEEEECCHHHHHHH
Confidence 335556654322 257778888999999999986655555444444443
No 169
>COG2958 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.51 E-value=17 Score=34.31 Aligned_cols=48 Identities=10% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCCCcccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHH
Q psy10308 41 GGNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQ 109 (225)
Q Consensus 41 ~gs~W~~~~~~~~~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi 109 (225)
++|+|.. ..+||.+.+.-+-.-+.||.||. ++|+++||-++. ++..+|
T Consensus 206 SNSSWAN--------eGYLV~~eId~~~~l~eLrrL~a------------sfGIGvI~L~td-~~~SqI 253 (307)
T COG2958 206 SNSSWAN--------EGYLVAREIDTHETLKELRRLHA------------SFGIGVIKLDTD-PSKSQI 253 (307)
T ss_pred ccccccc--------cceeeeeecchHHHHHHHHHHHH------------hcCceeEEecCC-ccccce
Confidence 4677772 34677665555433455666665 567788888776 444443
No 170
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=39.67 E-value=46 Score=24.57 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=32.5
Q ss_pred CceEEEEeCC----HHHHHHHHhhhcc--ceecCceEEEeCCC-hHHHHHHHHhhcc
Q psy10308 92 HSLALAKYST----REEAIKAQGNLNN--CILGNTTIFAEAPS-DAEVQSLLAHLSA 141 (225)
Q Consensus 92 ~G~AlVrYst----keEA~kAi~aLn~--c~Lg~ttI~aeFAs-e~ev~~~~~~~~~ 141 (225)
|-.+|||... +.|..+-.+..+. +.+...++.+|+.. +++|..|++-+.+
T Consensus 2 rEl~LiKV~~~~~~r~ei~~l~~~f~a~ivd~~~~~~iie~tG~~~kid~fi~~l~~ 58 (75)
T PF10369_consen 2 RELALIKVKATPENRSEILQLAEIFRARIVDVSPDSIIIELTGTPEKIDAFIKLLKP 58 (75)
T ss_dssp EEEEEEEEE-SCHHHHHHHHHHHHTT-EEEEEETTEEEEEEEE-HHHHHHHHHHSTG
T ss_pred eEEEEEEEECCccCHHHHHHHHHHhCCEEEEECCCEEEEEEcCCHHHHHHHHHHhhh
Confidence 4567887755 4444444455455 46666778888776 7889999988765
No 171
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=39.04 E-value=81 Score=27.24 Aligned_cols=72 Identities=14% Similarity=0.213 Sum_probs=46.3
Q ss_pred CcchhHHHHHHHhhCC-eeEEEecCC--------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC-ChHHHHHHH
Q psy10308 67 QIDGSTLKTLCVQHGP-LQNFHLYLN--------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP-SDAEVQSLL 136 (225)
Q Consensus 67 Qide~tLr~Lc~qhGp-V~tfhlnl~--------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA-se~ev~~~~ 136 (225)
..+.+.++.++.+||. |+. .+..+ +|..++.|.....|++++..|-.-.+......+-.. .+++...||
T Consensus 181 ~~~~~~~~~l~~~~~~~vl~-~I~~~~~v~~a~~~g~~v~~~~~~~~aa~~~~~la~el~~~~~~~~~~~~~~~~~~~~~ 259 (264)
T PRK13231 181 DNEVEIVSEFASRIGSRIIG-VIPRSNLVQESELDAKTVVETFPESEQASVYRKLANNIMNNTEFSTPEPMDDEEFEEFF 259 (264)
T ss_pred ccHHHHHHHHHHHhCCCeEE-eCCCCHHHHHHHHcCCceeEeCCCChHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 3456778999999985 553 45333 888999998888888888877542222211111111 378889998
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
..+
T Consensus 260 ~~~ 262 (264)
T PRK13231 260 KSF 262 (264)
T ss_pred HHh
Confidence 764
No 172
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=38.96 E-value=78 Score=25.49 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=41.7
Q ss_pred hHHHHHHHhhC-----CeeEEEecCC-CceEEE--EeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 71 STLKTLCVQHG-----PLQNFHLYLN-HSLALA--KYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 71 ~tLr~Lc~qhG-----pV~tfhlnl~-~G~AlV--rYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+..++|..+| -++++-+-.+ .++.+| +.+++=+-.|..+.|.. . .++||+++||.+++..
T Consensus 27 ~t~~e~~~~~~~~~~~~~K~li~~~d~~~~vlv~~~gd~~ld~~kl~~~lg~-----~--~l~~a~~ee~~~~~g~ 95 (152)
T cd00002 27 SDGLEAAEKLGLDPEQVFKTLVVEGDKKGLVVAVVPVDEELDLKKLAKALGA-----K--KVEMAPPKDAERLTGY 95 (152)
T ss_pred CCHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCC-----C--CcccCCHHHHHHhcCC
Confidence 47778888888 4777776555 365554 77777666666665421 1 2579999999998764
No 173
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=38.56 E-value=22 Score=25.24 Aligned_cols=17 Identities=47% Similarity=0.327 Sum_probs=14.2
Q ss_pred EEEeCCHHHHHHHHhhh
Q psy10308 96 LAKYSTREEAIKAQGNL 112 (225)
Q Consensus 96 lVrYstkeEA~kAi~aL 112 (225)
--.|.|.+||.+|...|
T Consensus 37 ~~~Y~t~~eA~~Aa~~L 53 (53)
T PF14882_consen 37 KKFYPTYEEASKAAIKL 53 (53)
T ss_pred ccccCCHHHHHHHHHhC
Confidence 34799999999998765
No 174
>COG3454 Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=38.17 E-value=58 Score=31.71 Aligned_cols=51 Identities=25% Similarity=0.301 Sum_probs=42.6
Q ss_pred hHHHHHHHhhCCeeEEEec---------CCCceEEEEeCCHHHHHHHHhhhccceecCce
Q psy10308 71 STLKTLCVQHGPLQNFHLY---------LNHSLALAKYSTREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhln---------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt 121 (225)
.+|-.+|..+|=++..|=. ...|+++-+|.|-.||++|-..+-+.+|.+.-
T Consensus 213 ~~i~~~c~~rgI~lASHDDaT~~hV~es~~~Gv~iAEFPtT~eAA~asr~~Gm~VlMGAP 272 (377)
T COG3454 213 QAIAALCRERGIALASHDDATVEHVAESHGLGVAIAEFPTTVEAAKASRELGMQVLMGAP 272 (377)
T ss_pred HHHHHHHHHcCCceecCCcCcHHHHHHHHhcCeeEEeCccHHHHHHHHHHhCchhhcCCC
Confidence 6889999999999988852 23899999999999999999998876666544
No 175
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=37.92 E-value=1.2e+02 Score=28.92 Aligned_cols=65 Identities=17% Similarity=0.110 Sum_probs=42.5
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+|.++++..+ -+++ ..||||+.+ ++|++.|||.+. +|.... +-+..+--.+++.+.+|.+++
T Consensus 346 vl~~~~~~~~--~~~e--E~FgPvl~v----------~~~~~~deai~~---~n~~~~-gL~a~i~t~d~~~~~~~~~~~ 407 (455)
T cd07148 346 VLLDPPRDAK--VSTQ--EIFGPVVCV----------YSYDDLDEAIAQ---ANSLPV-AFQAAVFTKDLDVALKAVRRL 407 (455)
T ss_pred EEeCCCCCCH--HHhC--CCcCCeEEE----------EecCCHHHHHHH---HhCCCC-CceEEEEcCCHHHHHHHHHHc
Confidence 6677776542 1122 568999875 688988887654 444443 344555556788899999988
Q ss_pred ccc
Q psy10308 140 SAT 142 (225)
Q Consensus 140 ~~~ 142 (225)
...
T Consensus 408 ~~g 410 (455)
T cd07148 408 DAT 410 (455)
T ss_pred CcC
Confidence 654
No 176
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=37.44 E-value=34 Score=26.85 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=32.3
Q ss_pred ccceEEecCCCCC-cchhHHHHHHHhhCCeeEEEec
Q psy10308 55 SGTWVLLKNLTPQ-IDGSTLKTLCVQHGPLQNFHLY 89 (225)
Q Consensus 55 ~~~wLvL~NLtpQ-ide~tLr~Lc~qhGpV~tfhln 89 (225)
...||.|.||+.+ .+++.|+.+....|.++.+...
T Consensus 103 ~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 103 IPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred cchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 5789999999998 7899999999999999999974
No 177
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=37.34 E-value=1.1e+02 Score=26.93 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=28.5
Q ss_pred chhHHHHHHHhhC-CeeEEEe-cCCCceEEEEeCCHHHHHHHHhhh
Q psy10308 69 DGSTLKTLCVQHG-PLQNFHL-YLNHSLALAKYSTREEAIKAQGNL 112 (225)
Q Consensus 69 de~tLr~Lc~qhG-pV~tfhl-nl~~G~AlVrYstkeEA~kAi~aL 112 (225)
|.++.++...+++ |++-++- .|..|-..+=+.+++||..|++.+
T Consensus 25 ~~~~A~~~l~~~~~p~~ViKadGla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPYVVIKADGLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SHHHHHHHHHHHSSSEEEEEESSSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCceEEccCCCCCCCEEEEeCCHHHHHHHHHHh
Confidence 4455555555555 4534443 466555566668999999998887
No 178
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=36.69 E-value=1.4e+02 Score=24.01 Aligned_cols=59 Identities=14% Similarity=0.032 Sum_probs=43.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCee-EEEe----cCCCceEEEEeCCHHHHHHHHhhhcccee
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQ-NFHL----YLNHSLALAKYSTREEAIKAQGNLNNCIL 117 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~-tfhl----nl~~G~AlVrYstkeEA~kAi~aLn~c~L 117 (225)
++|-.++.-+.-+.|..+-..+=+.+ .+.| -.+|=.+|+||.+.+.|..=....||+.+
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 45566666677777776666665555 3444 24567899999999999999999999644
No 179
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=36.63 E-value=1.4e+02 Score=28.12 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=42.8
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+|.++++++. .+++ ..||||+. +++|++.|||. +.+|.+.. +-+..+-..+.+.+.+|.+++
T Consensus 333 vl~~~~~~~~--~~~e--E~FgPvl~----------v~~~~~~~eai---~~~n~~~~-gL~a~v~t~d~~~a~~~~~~l 394 (443)
T cd07152 333 VLSGVKPGMP--AFDE--EIFGPVAP----------VTVFDSDEEAV---ALANDTEY-GLSAGIISRDVGRAMALADRL 394 (443)
T ss_pred EEecCCCCCh--hhhc--cccCCeEE----------EEeeCCHHHHH---HHHhCCCc-cceEEEECCCHHHHHHHHHhC
Confidence 7788877643 1111 45899987 56888888765 44455543 345566666788899999888
Q ss_pred ccc
Q psy10308 140 SAT 142 (225)
Q Consensus 140 ~~~ 142 (225)
...
T Consensus 395 ~~G 397 (443)
T cd07152 395 RTG 397 (443)
T ss_pred CcC
Confidence 543
No 180
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=36.57 E-value=1.8e+02 Score=25.04 Aligned_cols=80 Identities=14% Similarity=0.129 Sum_probs=57.5
Q ss_pred cCCCCC---cchhHHHHHHHhhCCeeEEEecCC-------------CceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 62 KNLTPQ---IDGSTLKTLCVQHGPLQNFHLYLN-------------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 62 ~NLtpQ---ide~tLr~Lc~qhGpV~tfhlnl~-------------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
.|+..+ +|-+.++++..+||.|..-.+|.+ .||-.|..+-.-+.+-||++|+..--..-...|=
T Consensus 32 ~Nv~~~~~~~d~~~i~~~ls~~G~i~~~R~Y~~a~a~~~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vL 111 (160)
T TIGR00288 32 PNMLRKEFNIDLDEIREILSEYGDIKIGKVLLNQYASDKLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVAL 111 (160)
T ss_pred CccChhhhccCHHHHHHHHHhcCCeEEEEEEechhccHHHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEE
Confidence 777765 356888999999999888777544 7888776555556777888776531133346777
Q ss_pred CCChHHHHHHHHhhcc
Q psy10308 126 APSDAEVQSLLAHLSA 141 (225)
Q Consensus 126 FAse~ev~~~~~~~~~ 141 (225)
+-.|.|...++..+..
T Consensus 112 vSgD~DF~~Lv~~lre 127 (160)
T TIGR00288 112 VTRDADFLPVINKAKE 127 (160)
T ss_pred EeccHhHHHHHHHHHH
Confidence 7889999888887754
No 181
>KOG1208|consensus
Probab=36.10 E-value=1.7e+02 Score=27.25 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=52.2
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCce---EEEeCCChHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTT---IFAEAPSDAEVQS 134 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt---I~aeFAse~ev~~ 134 (225)
-++|++=+.-|.-++.|.|+.+-..| .+-..+.+.+++|++.+.. ...+.. +..|+++-++|.+
T Consensus 37 ~~vVTGansGIG~eta~~La~~Ga~V------------v~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208|consen 37 VALVTGATSGIGFETARELALRGAHV------------VLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred EEEEECCCCchHHHHHHHHHhCCCEE------------EEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHH
Confidence 57889999999999999999843222 2233445778888888875 445555 7889999999998
Q ss_pred HHHhhc
Q psy10308 135 LLAHLS 140 (225)
Q Consensus 135 ~~~~~~ 140 (225)
|.+..-
T Consensus 104 fa~~~~ 109 (314)
T KOG1208|consen 104 FAEEFK 109 (314)
T ss_pred HHHHHH
Confidence 888764
No 182
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=36.03 E-value=1.1e+02 Score=24.33 Aligned_cols=48 Identities=13% Similarity=0.124 Sum_probs=39.4
Q ss_pred CCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCce
Q psy10308 64 LTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 64 LtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt 121 (225)
+.|-++|.+...+ ++-+.++|.+..+ .+|.|-.+|++.|=++....-.
T Consensus 6 ~~PvvTEKa~~l~--~~~nk~vF~V~~~--------AtK~~IK~AvE~lF~VkV~kVN 53 (94)
T COG0089 6 KSPVVTEKAMLLM--EKENKYVFIVDPD--------ATKPEIKAAVEELFGVKVEKVN 53 (94)
T ss_pred hcceecHHHHHhH--hhCCEEEEEECCC--------CCHHHHHHHHHHHhCCeEEEEE
Confidence 3567889988888 8889999999877 8999999999999886554443
No 183
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=35.52 E-value=27 Score=23.41 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.6
Q ss_pred EeCCChHHHHHHHHhhc
Q psy10308 124 AEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 124 aeFAse~ev~~~~~~~~ 140 (225)
-+||+.||+.+|+.++.
T Consensus 9 ~~~aspeel~~Y~~~L~ 25 (36)
T PF00159_consen 9 GDFASPEELAQYYAALR 25 (36)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 36999999999999874
No 184
>KOG4849|consensus
Probab=35.13 E-value=77 Score=31.35 Aligned_cols=65 Identities=12% Similarity=0.028 Sum_probs=43.8
Q ss_pred ceEEecCCCCCcchhHHHHHHH-----hhCCeeEEEe---cCCCceEEEEeCCHHHHHHHHhhhccceecCce
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCV-----QHGPLQNFHL---YLNHSLALAKYSTREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~-----qhGpV~tfhl---nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt 121 (225)
.-+||.||++-.+.+||.+... ||=.|+=|.- +.+||||||-..+..-..+-.+.|--..|-++.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 4589999999877666655433 4444444432 356999999999877666666666555666655
No 185
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=34.99 E-value=1.5e+02 Score=28.86 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=42.5
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.+++++.. -+++ ..||||+. +++|++.|||. +..|.+..+= +..|--.+.+.+.+|.++
T Consensus 376 tvl~~v~~~~~--i~~e--E~FgPvl~----------v~~~~~~deai---~~an~~~~gL-~a~v~t~d~~~a~~~~~~ 437 (496)
T PLN00412 376 LLLDNVRPDMR--IAWE--EPFGPVLP----------VIRINSVEEGI---HHCNASNFGL-QGCVFTRDINKAILISDA 437 (496)
T ss_pred EEEeCCCCCCH--HHhC--cCCCCeEE----------EEEeCCHHHHH---HHHhCCCCCc-eEEEEcCCHHHHHHHHHh
Confidence 37788887542 2222 67899986 56888888764 4445554433 444444567788999988
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 438 l~~G 441 (496)
T PLN00412 438 METG 441 (496)
T ss_pred CCcc
Confidence 7554
No 186
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=34.89 E-value=45 Score=31.73 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=32.1
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL 88 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl 88 (225)
-.+-.|++.||...||--++-+.|.+||||-.++|
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL 47 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYL 47 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEE
Confidence 34557999999999999999999999999999998
No 187
>PLN02278 succinic semialdehyde dehydrogenase
Probab=34.88 E-value=1.6e+02 Score=28.62 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=42.6
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++++. .+++ .-||||+. +++|++.|||. +..|....+ -+..|--.+.+.+.+|.++
T Consensus 385 tvl~~v~~~~~--~~~~--E~FGPVl~----------v~~~~~~deai---~~~N~~~~g-L~a~vft~d~~~~~~~~~~ 446 (498)
T PLN02278 385 TVLGDVTEDML--IFRE--EVFGPVAP----------LTRFKTEEEAI---AIANDTEAG-LAAYIFTRDLQRAWRVSEA 446 (498)
T ss_pred EEEecCCCCCh--hhhC--CCcCCEEE----------EEeeCCHHHHH---HHHhCCCCC-ceEEEEcCCHHHHHHHHHh
Confidence 46788887532 1111 34899987 45888887765 455666644 3444444567788999998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 447 l~~G 450 (498)
T PLN02278 447 LEYG 450 (498)
T ss_pred CCcC
Confidence 8654
No 188
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=34.40 E-value=1.4e+02 Score=29.16 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=42.8
Q ss_pred EEecCCCCCcchhHHHHHH-HhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLC-VQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc-~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.+|.++++.+. -+. ..||||+.+ ++|++.|||.+- +|... .+-+..+--.+.+.+.+|.+
T Consensus 397 tvl~~~~~~~~-----i~~eE~FgPVl~v----------~~~~~~deai~~---~n~~~-~gL~a~i~t~d~~~~~~~~~ 457 (511)
T TIGR01237 397 TIFKDVDRHAR-----LAQEEIFGPVVAI----------IRAADFDEALEI---ANGTE-YGLTGGVYSNTRDHIERAAA 457 (511)
T ss_pred EEEeCCCCCCh-----HhhCCCcCCeEEE----------EeeCCHHHHHHH---HhCCC-CCCeEEEEcCCHHHHHHHHH
Confidence 36788887532 122 348999764 578888877654 34443 34555665667888999999
Q ss_pred hhccc
Q psy10308 138 HLSAT 142 (225)
Q Consensus 138 ~~~~~ 142 (225)
++..+
T Consensus 458 ~l~~G 462 (511)
T TIGR01237 458 EFEVG 462 (511)
T ss_pred hCCcc
Confidence 88654
No 189
>PRK14428 acylphosphatase; Provisional
Probab=34.26 E-value=44 Score=26.23 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=38.3
Q ss_pred hhCCeeEEEec---CCCceEEEEeCCHHHHHHHHhhhcc--ceecCce--EEEeCCChHHHHHHHHhhc
Q psy10308 79 QHGPLQNFHLY---LNHSLALAKYSTREEAIKAQGNLNN--CILGNTT--IFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 79 qhGpV~tfhln---l~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~tt--I~aeFAse~ev~~~~~~~~ 140 (225)
|-+.++.+++. .=||+.| ||-++..|.+ ..|.| +.+.+-+ |+|+ -++++|+.|++.+.
T Consensus 3 ~~~~~~~~~i~v~G~VQGVGF-R~fv~~~A~~--lgL~G~V~N~~dGsVei~~q-G~~~~i~~fi~~l~ 67 (97)
T PRK14428 3 QSANLVRKHIVVTGLVQGVGF-RYFTVTQARR--LGVQGWVRNCRDGSVELEAQ-GSSDAVQALVEQLA 67 (97)
T ss_pred cchheEEEEEEEEEecCCccc-hHHHHHHHHH--cCCEEEEEECCCCEEEEEEE-cCHHHHHHHHHHHh
Confidence 34556666764 4489887 6777776665 45666 4555444 5554 46888999999985
No 190
>KOG2318|consensus
Probab=34.04 E-value=1.5e+02 Score=30.84 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=59.9
Q ss_pred CcccceEEecCCCCC-cchhHHHHHHHhh----CCeeEEEecCC------------Cc----------------------
Q psy10308 53 GWSGTWVLLKNLTPQ-IDGSTLKTLCVQH----GPLQNFHLYLN------------HS---------------------- 93 (225)
Q Consensus 53 ~~~~~wLvL~NLtpQ-ide~tLr~Lc~qh----GpV~tfhlnl~------------~G---------------------- 93 (225)
++.+.-|-|-|+-+. |...+|.-||.-| |.|+.|.||++ +|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456667888899885 8899999998876 68999999765 33
Q ss_pred -------------------eEEEEeCCHHHHHHHHhhhccceecCceEEE
Q psy10308 94 -------------------LALAKYSTREEAIKAQGNLNNCILGNTTIFA 124 (225)
Q Consensus 94 -------------------~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~a 124 (225)
||+|.|++.+-|.+-...-+|+.+..+...+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 6999999999999999999999999888444
No 191
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=33.74 E-value=49 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.496 Sum_probs=24.7
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL 88 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl 88 (225)
..++|+|+. ++.+++..||..+|+|..-..
T Consensus 37 G~vvlrg~~--~~~~~~~~~~~~~G~~~~~~~ 66 (258)
T PF02668_consen 37 GFVVLRGFP--LDPEQFEALASRLGPLMSHPR 66 (258)
T ss_dssp SEEEEESCT--SSHHHHHHHHHHHSEBEEESS
T ss_pred cEEEEcCCC--CCHHHHHHHHHhhCccccccc
Confidence 478999998 599999999999998854433
No 192
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=33.54 E-value=1.1e+02 Score=29.57 Aligned_cols=66 Identities=15% Similarity=0.161 Sum_probs=42.7
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++... -+++ ..||||+. +++|++.||| |+.+|.+..+ -+..|--.+.+.+.+|.++
T Consensus 364 tvl~~~~~~~~--i~~e--E~FgPvl~----------v~~~~~~~ea---i~~~n~~~~g-L~~~v~t~d~~~~~~~~~~ 425 (475)
T cd07117 364 TLIVNVTNDMR--VAQE--EIFGPVAT----------VIKFKTEDEV---IDMANDSEYG-LGGGVFTKDINRALRVARA 425 (475)
T ss_pred EEeecCCCCCh--hhhC--CCcCCeEE----------EEEECCHHHH---HHHHhCCCcC-ceEEEECCCHHHHHHHHHh
Confidence 47788876542 1111 36899987 4688888764 5555655543 4455555667889999998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 426 l~~G 429 (475)
T cd07117 426 VETG 429 (475)
T ss_pred CCcc
Confidence 8654
No 193
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=33.31 E-value=43 Score=26.38 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=36.3
Q ss_pred hhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcccee-cCceEEEeCCChHHHHHHHHhhccc
Q psy10308 79 QHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCIL-GNTTIFAEAPSDAEVQSLLAHLSAT 142 (225)
Q Consensus 79 qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~L-g~ttI~aeFAse~ev~~~~~~~~~~ 142 (225)
..+.|...+|.+ .|.-|.-.+.. +.... .+..|.+++.+++|+.++++.|...
T Consensus 42 ~~~~v~ha~l~i-~g~~lm~~D~~----------~~~~~~~~~sl~i~~~~~ee~~~~f~~Ls~g 95 (116)
T PF06983_consen 42 WKDKVMHAELTI-GGQKLMASDGG----------PDFPFGNNISLCIECDDEEEIDRIFDKLSEG 95 (116)
T ss_dssp HTTSEEEEEEEE-TTEEEEEEEES----------TS----TTEEEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCcEEEEEEEE-CCeEEEEECCC----------CCCCCCCcEEEEEEcCCHHHHHHHHHHHHcC
Confidence 677888777765 45555555443 11122 3456999999999999999999654
No 194
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=32.48 E-value=1.8e+02 Score=27.48 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=41.2
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++... .+++ ..||||+. +++|++.|||.+-+ |....+ -+..|---+++.+.+|.++
T Consensus 342 tvl~~~~~~~~--~~~~--E~fgPvl~----------v~~~~~~deai~~~---n~~~~g-L~~~v~t~d~~~a~~~~~~ 403 (452)
T cd07147 342 TILEDVPPDME--VNCE--EVFGPVVT----------VEPYDDFDEALAAV---NDSKFG-LQAGVFTRDLEKALRAWDE 403 (452)
T ss_pred EEEeCCCCCCh--HHhC--cCcCCeEE----------EEEeCCHHHHHHHH---hCCCCC-ceEEEECCCHHHHHHHHHH
Confidence 37778776432 2222 57899987 55888888765444 443333 2444444567788999988
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 404 ~~~G 407 (452)
T cd07147 404 LEVG 407 (452)
T ss_pred cCcc
Confidence 7543
No 195
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=31.83 E-value=39 Score=22.48 Aligned_cols=15 Identities=40% Similarity=0.519 Sum_probs=12.5
Q ss_pred eCCHHHHHHHHhhhc
Q psy10308 99 YSTREEAIKAQGNLN 113 (225)
Q Consensus 99 YstkeEA~kAi~aLn 113 (225)
|.|++||+++-..|.
T Consensus 1 y~tk~eAe~~A~~~G 15 (34)
T PF12518_consen 1 YPTKAEAEKRAKELG 15 (34)
T ss_pred CCcHHHHHHHHHHcC
Confidence 889999999877753
No 196
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=31.65 E-value=68 Score=21.79 Aligned_cols=16 Identities=44% Similarity=0.517 Sum_probs=9.9
Q ss_pred EeCCHHHHHHHHhhhc
Q psy10308 98 KYSTREEAIKAQGNLN 113 (225)
Q Consensus 98 rYstkeEA~kAi~aLn 113 (225)
-|.+++||+++...|.
T Consensus 50 ~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 50 PFSSREEAEAALRKLK 65 (76)
T ss_dssp CECTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4566666666666554
No 197
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=31.58 E-value=1.8e+02 Score=27.78 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=41.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.+. .+++ ..||||+. +++|++.|||.+ .+|.+..+ -+..|---+.+.+.+|.++
T Consensus 364 tvl~~~~~~~~--~~~~--E~FgPvl~----------v~~~~~~~eai~---~~n~~~~g-L~~~v~t~d~~~a~~~~~~ 425 (478)
T cd07131 364 TVFTDVTPDMR--IAQE--EIFGPVVA----------LIEVSSLEEAIE---IANDTEYG-LSSAIYTEDVNKAFRARRD 425 (478)
T ss_pred EEEeCCCCCCh--HhhC--CCcCCeEE----------EEEeCCHHHHHH---HHhCCCCc-ceEEEEcCCHHHHHHHHHh
Confidence 36778876432 2222 56899987 458888777654 44655543 3444444567888999998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 426 l~~G 429 (478)
T cd07131 426 LEAG 429 (478)
T ss_pred cCcc
Confidence 8544
No 198
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=31.30 E-value=61 Score=30.38 Aligned_cols=58 Identities=16% Similarity=0.054 Sum_probs=42.9
Q ss_pred EEecCCCceEEEEeCCHHHHHHHHhhh--cc----ceecCceEEEeCCChHHHHHHHHhhcccc
Q psy10308 86 FHLYLNHSLALAKYSTREEAIKAQGNL--NN----CILGNTTIFAEAPSDAEVQSLLAHLSATA 143 (225)
Q Consensus 86 fhlnl~~G~AlVrYstkeEA~kAi~aL--n~----c~Lg~ttI~aeFAse~ev~~~~~~~~~~~ 143 (225)
.|+|...=-+-..|.-.|++..|+++| .| -....+.=+++|=++.||+++.++...+.
T Consensus 4 ~~~~~~~~~~~~~f~y~E~~RLAleaLl~~G~eAy~~~L~~E~~~~FLS~~Ei~~I~~~~~~~~ 67 (284)
T PF07894_consen 4 SHVNWRVPESKPEFSYSESQRLALEALLSGGPEAYYEFLKEEGERDFLSSEEIQYILENAEDPD 67 (284)
T ss_pred cccCCCCCCCCCCCccCHHHHHHHHHHHhcCHHHHHHHHHhcCCCCCCCHHHHHHHHHhccCCC
Confidence 344433333467788899999999999 44 23444556789999999999999987764
No 199
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=31.23 E-value=1e+02 Score=22.35 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=24.7
Q ss_pred EEEeCCHHHHHHHHhhhccceecCceEEEeCCC--hHHHHHHHHhhc
Q psy10308 96 LAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS--DAEVQSLLAHLS 140 (225)
Q Consensus 96 lVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs--e~ev~~~~~~~~ 140 (225)
+++=.+.+||+++.+.|. .+..+++.|-. +++.+|+++-+.
T Consensus 3 v~~p~~~~D~~~i~~~l~----~g~~Vivnl~~l~~~~~~Ri~Dfl~ 45 (73)
T PF04472_consen 3 VFEPKSFEDAREIVDALR----EGKIVIVNLENLDDEEAQRILDFLS 45 (73)
T ss_dssp EEE-SSGGGHHHHHHHHH----TT--EEEE-TTS-HHHHHHHHHHHH
T ss_pred EEeeCCHHHHHHHHHHHH----cCCEEEEECCCCCHHHHHHHHHHHh
Confidence 455566778888777775 34555555544 777788887664
No 200
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=31.18 E-value=2.4e+02 Score=25.87 Aligned_cols=63 Identities=10% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHHhhCCeeEEEecCC-CceEEEEeCCHHHHHHHHhhhccceecC--ceEEEeCCChHHHHHHHHhhc
Q psy10308 73 LKTLCVQHGPLQNFHLYLN-HSLALAKYSTREEAIKAQGNLNNCILGN--TTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 73 Lr~Lc~qhGpV~tfhlnl~-~G~AlVrYstkeEA~kAi~aLn~c~Lg~--ttI~aeFAse~ev~~~~~~~~ 140 (225)
+.+++.++| +++... -.|.+|++...++..++... +|+.+-. ..|++.+...+|..+|++-+.
T Consensus 285 ~~~~l~~~g----~~~~~~~~nf~~~~~~~~~~~~~~l~~-~GI~Vr~~~~~iRis~~~~~~~~~l~~al~ 350 (366)
T PRK01533 285 YESFCKENE----IPFYQSQTNFIFLPVENGGEIYEACAH-AGFIIRPFPNGVRITVGTREQNEGVISVLQ 350 (366)
T ss_pred HHHHHHhCC----CccCCCcCcEEEEeCCCHHHHHHHHHH-CCcEEccCCCceEEeCCCHHHHHHHHHHHH
Confidence 445555555 333333 44888888654444444333 6654432 349999999999999998664
No 201
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=31.12 E-value=1.1e+02 Score=22.81 Aligned_cols=38 Identities=3% Similarity=-0.070 Sum_probs=26.5
Q ss_pred CeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceecC
Q psy10308 82 PLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILGN 119 (225)
Q Consensus 82 pV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ 119 (225)
+|.++.. .--+||.||+=.+.++..+|++.+-++....
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~~~ 71 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHIRGSR 71 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTEEEEC
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccceeecc
Confidence 4555443 4459999999999999999999987654443
No 202
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=30.65 E-value=2e+02 Score=27.97 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=44.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecC-ceEEEeCCChHHHHHHHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGN-TTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~-ttI~aeFAse~ev~~~~~ 137 (225)
.+|.+++++..- +++ ..||||+.+ ++|++.|||..-+ |.+.++- .+..+---+.+.+.+|.+
T Consensus 345 tvl~~v~~d~~i--~~e--E~FGPVl~V----------~~~~d~deAi~~a---N~~~yGL~hs~~IfT~d~~~a~~~a~ 407 (465)
T PRK15398 345 LLIVETDANHPF--VVT--ELMMPVLPV----------VRVKDVDEAIALA---VKLEHGNRHTAIMHSRNVDNLNKMAR 407 (465)
T ss_pred EEEecCCCCCch--hcc--cccCceEEE----------EEeCCHHHHHHHH---HhcccCCcceEEEecCCHHHHHHHHH
Confidence 477788765431 111 568999875 5899988876543 5555542 366666677888999999
Q ss_pred hhccc
Q psy10308 138 HLSAT 142 (225)
Q Consensus 138 ~~~~~ 142 (225)
++...
T Consensus 408 ~l~~G 412 (465)
T PRK15398 408 AIQTS 412 (465)
T ss_pred hCCce
Confidence 88654
No 203
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=30.46 E-value=1.9e+02 Score=27.48 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=40.1
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+|.++++.+ ..+++ ..||||+. +++|++.|||. +..|.+..+ -+..+---+.+.+.+|.+++
T Consensus 343 vl~~v~~~~--~~~~e--E~FgPvl~----------v~~~~~~~eai---~~~n~~~~g-L~~~i~t~d~~~a~~~~~~l 404 (454)
T cd07101 343 VLTGVTEDM--ELFAE--ETFGPVVS----------IYRVADDDEAI---ELANDTDYG-LNASVWTRDGARGRRIAARL 404 (454)
T ss_pred EEeCCCCCC--HHHhC--CCCCceEE----------EEeeCCHHHHH---HHHhCCCCC-ceEEEEcCCHHHHHHHHHhc
Confidence 667887643 22222 47899986 56888888765 444555433 34444444667788888887
Q ss_pred cc
Q psy10308 140 SA 141 (225)
Q Consensus 140 ~~ 141 (225)
..
T Consensus 405 ~~ 406 (454)
T cd07101 405 RA 406 (454)
T ss_pred Cc
Confidence 54
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=30.37 E-value=24 Score=27.54 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.6
Q ss_pred ceEEecCCCCCcchhHHHHH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTL 76 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~L 76 (225)
.-|+|+||+.++||++|+++
T Consensus 53 rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 53 RTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEEeCCCCCCChhhheee
Confidence 35999999999999999875
No 205
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=30.25 E-value=1.2e+02 Score=24.86 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=31.6
Q ss_pred hhHHHHH-HHhhCCeeEEEec--CCCceEEEEeC--CHHHHHHHHhhhccc
Q psy10308 70 GSTLKTL-CVQHGPLQNFHLY--LNHSLALAKYS--TREEAIKAQGNLNNC 115 (225)
Q Consensus 70 e~tLr~L-c~qhGpV~tfhln--l~~G~AlVrYs--tkeEA~kAi~aLn~c 115 (225)
|+||-.| |.-|.|.-++.+| .+.|+++|+-. .|.+|.+=++.|..|
T Consensus 71 EEDL~~lPail~aP~gs~V~YGQP~eGvV~v~v~~~~k~~~~~ll~~~~~~ 121 (121)
T PF04019_consen 71 EEDLAVLPAILYAPEGSVVLYGQPGEGVVLVKVTEEAKRRARELLKKFEKC 121 (121)
T ss_pred hHHHHHHHHHHhCCCCCEEEECCCCCeEEEEEeCHHHHHHHHHHHHHhhcC
Confidence 5555554 5566777777776 77888888887 477777777666655
No 206
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=30.24 E-value=3.2e+02 Score=23.65 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=53.5
Q ss_pred hhHHHHHHHhhCCeeEEEec-----CCCceEEEEeC----CHHHHHHHHhhhcc--ceecCceEEEeCCC-hHHHHHHHH
Q psy10308 70 GSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYS----TREEAIKAQGNLNN--CILGNTTIFAEAPS-DAEVQSLLA 137 (225)
Q Consensus 70 e~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYs----tkeEA~kAi~aLn~--c~Lg~ttI~aeFAs-e~ev~~~~~ 137 (225)
-+.|+.=+.+.-+|+.+... ..|-.||||-. ++.|..+-.+..+. +.+...++.+|+.- ++++..|++
T Consensus 57 ieqL~kQL~KLidVl~V~~~~~~~~v~rEl~LiKv~~~~~~r~ei~~~~~~f~a~ivdv~~~~~~ie~tG~~~ki~a~~~ 136 (174)
T CHL00100 57 IEQLTKQLYKLVNILKVQDITNIPCVERELMLIKINVNSQTRPEILEIAQIFRAKVVDLSEESLILEVTGDPGKIVAIEQ 136 (174)
T ss_pred HHHHHHHHHHHhHhhEEEecCCccceeeEEEEEEEecCCcCHHHHHHHHHHhCCEEEEecCCEEEEEEcCCHHHHHHHHH
Confidence 45666666777778888863 44999999986 45566666666666 46677779999887 788999999
Q ss_pred hhccc
Q psy10308 138 HLSAT 142 (225)
Q Consensus 138 ~~~~~ 142 (225)
-+.+-
T Consensus 137 ~l~~~ 141 (174)
T CHL00100 137 LLEKF 141 (174)
T ss_pred Hhhhc
Confidence 88654
No 207
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=30.12 E-value=1.5e+02 Score=23.83 Aligned_cols=61 Identities=8% Similarity=-0.019 Sum_probs=39.5
Q ss_pred hHHHHHHHhhC-----CeeEEEecCCC-ceEEE--EeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 71 STLKTLCVQHG-----PLQNFHLYLNH-SLALA--KYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 71 ~tLr~Lc~qhG-----pV~tfhlnl~~-G~AlV--rYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+..+++..+| -++++-+...+ ++.+| +.+.+=+-.|..+.|+. . .++||+++|+..++..
T Consensus 26 ~t~~e~a~~~g~~~~~~~Ktlv~~~~~~~~~lv~~~gd~~ld~~kl~~~lg~-----~--~~~~a~~ee~~~~~g~ 94 (152)
T TIGR00011 26 LDGESAAEKLGVDPHRVFKTLVAEGDKKGPVVAVIPGDEELDLKKLAKASGG-----K--KAEMADPKDAEKVTGY 94 (152)
T ss_pred ccHHHHHHHhCCCHHHeEEEEEEEcCCCcEEEEEEECCceeCHHHHHHHhCC-----C--CcccCCHHHHHHhcCC
Confidence 47777888887 36676665444 55555 66666555555555432 1 2579999999987654
No 208
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=30.08 E-value=57 Score=26.72 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=18.6
Q ss_pred CCceEEEEeCCHHHHHHHHhhhcc
Q psy10308 91 NHSLALAKYSTREEAIKAQGNLNN 114 (225)
Q Consensus 91 ~~G~AlVrYstkeEA~kAi~aLn~ 114 (225)
.+-++++.|.+.++|.+|+..+..
T Consensus 4 ~~~~~~~~f~~~~~a~~~~~~i~~ 27 (248)
T PF02913_consen 4 ARATALVFFPSFEDAADAVRAIMQ 27 (248)
T ss_dssp EEEEEEEEESCHHHHHHHHCCCCH
T ss_pred ceEEEEEEcCCHHHHHHHHHHHHH
Confidence 455788999999999988886643
No 209
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=29.83 E-value=1.8e+02 Score=23.86 Aligned_cols=50 Identities=12% Similarity=0.132 Sum_probs=36.8
Q ss_pred CCCceEEEEeCCHHHHHHHHhhhccce-ecCceEEEeCCChHHHHHHHHhhcc
Q psy10308 90 LNHSLALAKYSTREEAIKAQGNLNNCI-LGNTTIFAEAPSDAEVQSLLAHLSA 141 (225)
Q Consensus 90 l~~G~AlVrYstkeEA~kAi~aLn~c~-Lg~ttI~aeFAse~ev~~~~~~~~~ 141 (225)
...|-+||-|.+.+..++..+.+.... ..+-.|.++ ++.+.+.++++...
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~ 57 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKR 57 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHh
Confidence 557999999999999999999997643 234456666 67778888877654
No 210
>KOG4660|consensus
Probab=29.68 E-value=86 Score=32.04 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=32.8
Q ss_pred CCCceEEEEeCCHHHHHHHHhhhcc---ceecCceEEEeCC------ChHHHHHH
Q psy10308 90 LNHSLALAKYSTREEAIKAQGNLNN---CILGNTTIFAEAP------SDAEVQSL 135 (225)
Q Consensus 90 l~~G~AlVrYstkeEA~kAi~aLn~---c~Lg~ttI~aeFA------se~ev~~~ 135 (225)
-+.|||||-+-+.+.+.++.+|-|| +++... -+++++ +|+++++|
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~-Kia~itYArIQGk~~Li~hF 482 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSE-KIASITYARIQGKEALIEHF 482 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcce-eeeeeehhhhhchHHHHHHh
Confidence 3489999999999999999999999 566633 334443 35555555
No 211
>cd04332 YbaK_like YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).
Probab=29.04 E-value=1.3e+02 Score=22.88 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=29.1
Q ss_pred eeEEEecCCC-ceEEE--EeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 83 LQNFHLYLNH-SLALA--KYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 83 V~tfhlnl~~-G~AlV--rYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
|+++.+...+ ++.+| +.+++=+-.|..+.+.. . .++||+++|+.+++..
T Consensus 29 ~K~l~l~~~~~~~v~v~~~~d~~~d~~~l~~~~g~-~------~l~~a~~~~~~~~~g~ 80 (136)
T cd04332 29 AKTLVLKDDKGGLVLVVVPGDHELDLKKLAKALGA-K------KLRLASEEELEELTGC 80 (136)
T ss_pred EEEEEEEcCCCcEEEEEEecccccCHHHHHHHhCC-C------CeeeCCHHHHHHHhCC
Confidence 3455544444 55555 66666544444444321 1 6899999999996643
No 212
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=28.84 E-value=1e+02 Score=28.48 Aligned_cols=65 Identities=15% Similarity=0.163 Sum_probs=38.3
Q ss_pred CcchhHHHHHHHhhC-Cee-EEEecCCCceEEEEeCCHHHHHHHHhhh--ccceecCceEEEeCCC--hHHHHHHHHhh
Q psy10308 67 QIDGSTLKTLCVQHG-PLQ-NFHLYLNHSLALAKYSTREEAIKAQGNL--NNCILGNTTIFAEAPS--DAEVQSLLAHL 139 (225)
Q Consensus 67 Qide~tLr~Lc~qhG-pV~-tfhlnl~~G~AlVrYstkeEA~kAi~aL--n~c~Lg~ttI~aeFAs--e~ev~~~~~~~ 139 (225)
.|+++.+ +++.++| ++. ..|+|=.+ ...+++.+|++.| .|+.+.+++++..-.+ .+++..+++.+
T Consensus 190 rit~el~-~~L~~~~~~~~~~~h~dh~~-------Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgiNDn~~~l~~L~~~l 260 (321)
T TIGR03821 190 RITSGLC-DLLANSRLQTVLVVHINHAN-------EIDAEVADALAKLRNAGITLLNQSVLLRGVNDNADTLAALSERL 260 (321)
T ss_pred HhhHHHH-HHHHhcCCcEEEEeeCCChH-------hCcHHHHHHHHHHHHcCCEEEecceeeCCCCCCHHHHHHHHHHH
Confidence 3555444 3666676 232 23443111 2237899999999 5688899887766533 35566666554
No 213
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=28.82 E-value=1e+02 Score=24.86 Aligned_cols=44 Identities=9% Similarity=-0.018 Sum_probs=34.4
Q ss_pred cCCCceEEEEeCCHHHHHHHHhhhccc-eecCceEEEeCCChHHHHHHHH
Q psy10308 89 YLNHSLALAKYSTREEAIKAQGNLNNC-ILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 89 nl~~G~AlVrYstkeEA~kAi~aLn~c-~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
..-.||.||+.+..++.-.++..+.++ -+.. ..-+++||.+++.
T Consensus 35 ~~fpGYvFV~~~~~~~~~~~i~~~~gv~~~v~-----~~i~~~ei~~l~~ 79 (145)
T TIGR00405 35 ESLKGYILVEAETKIDMRNPIIGVPHVRGVVE-----GEIDFEEIERFLT 79 (145)
T ss_pred CCCCcEEEEEEECcHHHHHHHhCCCCEEeecC-----CCCCHHHHHHHhc
Confidence 467999999999888888999888773 2332 2368999999985
No 214
>PRK07908 hypothetical protein; Provisional
Probab=28.76 E-value=2.7e+02 Score=24.84 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=30.4
Q ss_pred CCceEEEEeCCHHHHHHHHhhhcccee---------cCceEEEeCCChHHHHHHHHhhc
Q psy10308 91 NHSLALAKYSTREEAIKAQGNLNNCIL---------GNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 91 ~~G~AlVrYstkeEA~kAi~aLn~c~L---------g~ttI~aeFAse~ev~~~~~~~~ 140 (225)
.-.|.+++....++..+..+. +++.+ +...|++-|.+++|+++|++-+.
T Consensus 285 ~g~~~~~~~~~~~~~~~~l~~-~gI~v~~g~~f~~~~~~~vRis~~~~~~~~~l~~al~ 342 (349)
T PRK07908 285 AAPFVLVRVPDAELLRKRLRE-RGIAVRRGDTFPGLDPDYLRLAVRPRAEVPVLVQALA 342 (349)
T ss_pred CceEEEEECCcHHHHHHHHHh-CCEEEEECCCCCCCCCCeEEEEeCCCccHHHHHHHHH
Confidence 345667777654444433322 34322 13459999999999999988664
No 215
>PF01693 Cauli_VI: Caulimovirus viroplasmin; InterPro: IPR011320 This entry represents the N-terminal domain of RNase HI, which has a 3-layer alpha/beta/alpha structure []. This domain is lacking in retroviral and prokaryotic enzymes, but shows a striking structural similarity to the ribosomal protein L9 N-terminal domain, and may function as a regulatory RNA-binding module. However, the topology of this domain differs from structures of known RNA binding domains such as the double-stranded RNA binding domain (dsRBD), the hnRNP K homology (KH) domain and the RNP motif. Eukaryotic RNases HI possess either one or two copies of this small N-terminal domain, in addition to the well-conserved catalytic RNase H domain. RNase HI belongs to the family of ribonuclease H enzymes that recognise RNA:DNA hybrids and degrade the RNA component. ; PDB: 1QHK_A 3BSU_C.
Probab=28.66 E-value=64 Score=21.43 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.0
Q ss_pred CCceEEEEeCCHHHHHHH
Q psy10308 91 NHSLALAKYSTREEAIKA 108 (225)
Q Consensus 91 ~~G~AlVrYstkeEA~kA 108 (225)
-.|.-+-+|.|++||+++
T Consensus 27 ~~ga~~k~F~t~~eA~~~ 44 (44)
T PF01693_consen 27 YPGAIYKSFKTREEAEEF 44 (44)
T ss_dssp -TT-EEEEESSHHHHHHH
T ss_pred CCCceECCcCCHHHHhhC
Confidence 367779999999999874
No 216
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=28.55 E-value=1.3e+02 Score=28.62 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=41.2
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
-+|.++++... .+++ ..||||+. +++|++.||| |+.+|.+..+= +..|---+.+.+.+|.++
T Consensus 363 tvl~~~~~~~~--~~~e--E~FgPvl~----------v~~~~~~dea---i~~~N~~~~gL-~a~v~t~d~~~~~~~~~~ 424 (475)
T PRK13473 363 TLLAGARQDDE--IVQR--EVFGPVVS----------VTPFDDEDQA---VRWANDSDYGL-ASSVWTRDVGRAHRVSAR 424 (475)
T ss_pred EEEecCCCCCh--hhhC--CccCCeEE----------EeccCCHHHH---HHHHhCCCCCc-eEEEECCCHHHHHHHHHh
Confidence 46777775432 2222 46899986 4688888876 45556655442 333333467788999998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 425 l~~G 428 (475)
T PRK13473 425 LQYG 428 (475)
T ss_pred CCcc
Confidence 8653
No 217
>PRK00523 hypothetical protein; Provisional
Probab=28.26 E-value=47 Score=25.46 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=16.1
Q ss_pred CCCcchhHHHHHHHhhCC
Q psy10308 65 TPQIDGSTLKTLCVQHGP 82 (225)
Q Consensus 65 tpQide~tLr~Lc~qhGp 82 (225)
.|.|+|+-+|++++|-|.
T Consensus 37 NPpine~mir~M~~QMGq 54 (72)
T PRK00523 37 NPPITENMIRAMYMQMGR 54 (72)
T ss_pred CcCCCHHHHHHHHHHhCC
Confidence 478999999999999884
No 218
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=28.10 E-value=2.1e+02 Score=27.13 Aligned_cols=84 Identities=13% Similarity=0.210 Sum_probs=48.1
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCe-eEEEecCCCce-----EEEEeCCHHHHHHHHhhhccc---eecCceEEEeCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPL-QNFHLYLNHSL-----ALAKYSTREEAIKAQGNLNNC---ILGNTTIFAEAP 127 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV-~tfhlnl~~G~-----AlVrYstkeEA~kAi~aLn~c---~Lg~ttI~aeFA 127 (225)
.|+-+.-+.+..-.++|-+++.+.|.+ ..+||.+..|. .+=|--+.++..+|++.|... ..-.++|++=|+
T Consensus 218 ~~~r~~~~~p~~~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~~i~i~~~~I~G~P 297 (430)
T TIGR01125 218 YWIRMHYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCPDAVLRTTFIVGFP 297 (430)
T ss_pred cEEEEccCCcccCCHHHHHHHhhCCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCCCCeEeEEEEEECC
Confidence 365554455443334555566777764 57787655442 233445678888888887642 112356888887
Q ss_pred C--hHHH---HHHHHhhc
Q psy10308 128 S--DAEV---QSLLAHLS 140 (225)
Q Consensus 128 s--e~ev---~~~~~~~~ 140 (225)
. ++|+ -+|+.+..
T Consensus 298 gET~e~~~~t~~fl~~~~ 315 (430)
T TIGR01125 298 GETEEDFQELLDFVEEGQ 315 (430)
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 6 4455 44555543
No 219
>PRK11370 YciI-like protein; Reviewed
Probab=27.16 E-value=63 Score=24.65 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=18.1
Q ss_pred CceEEEeCCChHHHHHHHHhh
Q psy10308 119 NTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 119 ~ttI~aeFAse~ev~~~~~~~ 139 (225)
+..|+++|.+.+||..|++.-
T Consensus 58 G~~ii~ea~s~~~a~~~~~~D 78 (99)
T PRK11370 58 GSTVIAEFESLEAAQAWADAD 78 (99)
T ss_pred ceEEEEEECCHHHHHHHHHCC
Confidence 557889999999999999863
No 220
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=26.91 E-value=41 Score=24.36 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=17.5
Q ss_pred HhhCCeeEEEecCCCceEEEEeCC
Q psy10308 78 VQHGPLQNFHLYLNHSLALAKYST 101 (225)
Q Consensus 78 ~qhGpV~tfhlnl~~G~AlVrYst 101 (225)
|+.|.|+.|. ..+||.||+-..
T Consensus 1 m~~G~Vk~f~--~~kGfGFI~~~~ 22 (68)
T TIGR02381 1 MAIGIVKWFN--NAKGFGFICPEG 22 (68)
T ss_pred CCCeEEEEEe--CCCCeEEEecCC
Confidence 4567777775 889999998876
No 221
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=26.87 E-value=1.5e+02 Score=28.49 Aligned_cols=64 Identities=13% Similarity=0.215 Sum_probs=41.4
Q ss_pred EecCCCCCcchhHHHHHH-HhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 60 LLKNLTPQIDGSTLKTLC-VQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc-~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
+|.++++.+. -+. .-||||+. +++|++.||| |+.+|....+ -+..|--.+.+.+.+|.++
T Consensus 371 vl~~v~~~~~-----i~~eE~FgPvl~----------v~~~~~~~ea---i~~~n~~~~g-L~a~I~t~d~~~~~~~~~~ 431 (488)
T PRK13252 371 VFTDCTDDMT-----IVREEIFGPVMS----------VLTFDDEDEV---IARANDTEYG-LAAGVFTADLSRAHRVIHQ 431 (488)
T ss_pred EeccCCCCCh-----HhhCCCCCceEE----------EEeeCCHHHH---HHHHhCCCCC-CeEEEEeCCHHHHHHHHHh
Confidence 6777776432 111 24899987 5688888875 5555655543 4555555667888999998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 432 l~~G 435 (488)
T PRK13252 432 LEAG 435 (488)
T ss_pred cCcc
Confidence 8654
No 222
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.86 E-value=3.3e+02 Score=22.46 Aligned_cols=71 Identities=14% Similarity=0.086 Sum_probs=37.3
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.++|++-+--|-..-.+.|+. .|- ++. ++--...++.++..+.+......-..+.+++.+++++.++++
T Consensus 4 ~vlItG~sg~iG~~la~~L~~-~g~--~vi--------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 72 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAA-AGF--DLA--------INDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLD 72 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHH-CCC--EEE--------EEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 467777776666666666654 452 111 111112222333333332211112347889999999888887
Q ss_pred hh
Q psy10308 138 HL 139 (225)
Q Consensus 138 ~~ 139 (225)
+.
T Consensus 73 ~~ 74 (256)
T PRK12745 73 AA 74 (256)
T ss_pred HH
Confidence 66
No 223
>cd07105 ALDH_SaliADH Salicylaldehyde dehydrogenase, DoxF-like. Salicylaldehyde dehydrogenase (DoxF, SaliADH, EC=1.2.1.65) involved in the upper naphthalene catabolic pathway of Pseudomonas strain C18 and other similar sequences are present in this CD.
Probab=26.86 E-value=2.5e+02 Score=26.49 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=40.0
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.++ -+++ ..||||+.+ ++|++.|||.+ .+|.... +-+..+---+++.+.+|.++
T Consensus 322 tvl~~~~~~~~--~~~e--E~fgPvl~v----------~~~~~~deai~---~~n~~~~-gL~~~v~t~d~~~~~~~~~~ 383 (432)
T cd07105 322 TILDNVTPDMD--IYSE--ESFGPVVSI----------IRVKDEEEAVR---IANDSEY-GLSAAVFTRDLARALAVAKR 383 (432)
T ss_pred EEEecCCCCCH--HHhC--CCcCCeEEE----------EeeCCHHHHHH---HHhCCCC-CceEEEEcCCHHHHHHHHHh
Confidence 47888887532 1111 348999874 57888877654 4454443 33444444456678899888
Q ss_pred hcc
Q psy10308 139 LSA 141 (225)
Q Consensus 139 ~~~ 141 (225)
+..
T Consensus 384 l~~ 386 (432)
T cd07105 384 IES 386 (432)
T ss_pred CCc
Confidence 754
No 224
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=26.53 E-value=1.5e+02 Score=28.72 Aligned_cols=65 Identities=14% Similarity=0.237 Sum_probs=40.0
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+|.++++... -.++ .-||||+. +++|++.|||. +.+|....+= +..|--.+.+.+.+|.+++
T Consensus 383 vl~~v~~~~~--~~~e--E~FgPvl~----------v~~~~~~~eai---~~~n~~~~gL-sa~v~t~d~~~a~~~~~~l 444 (494)
T PRK09847 383 IFVDVDPNAS--LSRE--EIFGPVLV----------VTRFTSEEQAL---QLANDSQYGL-GAAVWTRDLSRAHRMSRRL 444 (494)
T ss_pred EEeCCCCCCh--HHhC--cCcCceEE----------EEecCCHHHHH---HHHhCCCCCc-eEEEEcCCHHHHHHHHHhC
Confidence 5667776432 1111 23789876 56888888754 5556665543 3333335677889999988
Q ss_pred ccc
Q psy10308 140 SAT 142 (225)
Q Consensus 140 ~~~ 142 (225)
...
T Consensus 445 ~~G 447 (494)
T PRK09847 445 KAG 447 (494)
T ss_pred Ccc
Confidence 653
No 225
>cd07121 ALDH_EutE Ethanolamine utilization protein EutE-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), converts acetaldehyde into acetyl-CoA. This CD is limited to such monofunctional enzymes as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium. Mutations in eutE abolish the ability to utilize ethanolamine as a carbon source.
Probab=26.45 E-value=1.9e+02 Score=27.74 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=45.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceec-CceEEEeCCChHHHHHHHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILG-NTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg-~ttI~aeFAse~ev~~~~~ 137 (225)
.+|.|+++.+.- +++ ..||||+.+ ++|++.|||. +..|.+.++ +.+..|---+.+.+.+|.+
T Consensus 315 til~~v~~~~~i--~~e--E~FgPVl~v----------~~~~~~~eAi---~~an~~~~GLghsa~I~t~d~~~a~~~a~ 377 (429)
T cd07121 315 LIIVETDKDHPF--VVE--EQMMPILPV----------VRVKNFDEAI---ELAVELEHGNRHTAIIHSKNVENLTKMAR 377 (429)
T ss_pred EEEEecCCCCCc--ccc--ccccceEEE----------EEeCCHHHHH---HHHHhhccCCCceEEEecCCHHHHHHHHh
Confidence 577888765431 111 568999875 5788888765 444556654 2366676777888999999
Q ss_pred hhccc
Q psy10308 138 HLSAT 142 (225)
Q Consensus 138 ~~~~~ 142 (225)
++...
T Consensus 378 ~l~aG 382 (429)
T cd07121 378 AMQTT 382 (429)
T ss_pred hCCce
Confidence 88654
No 226
>PRK06949 short chain dehydrogenase; Provisional
Probab=26.21 E-value=3.2e+02 Score=22.60 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=39.1
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.++|.+-+--|--...+.| .++|- .+ .+-..+.+++++.++.|......-..+.+++.++++|.++++
T Consensus 11 ~ilItGasg~IG~~~a~~l-~~~G~--~V---------i~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~ 78 (258)
T PRK06949 11 VALVTGASSGLGARFAQVL-AQAGA--KV---------VLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVA 78 (258)
T ss_pred EEEEECCCcHHHHHHHHHH-HHCCC--EE---------EEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 5777776666655555554 44553 11 112234455555544443221122457888888888888887
Q ss_pred hh
Q psy10308 138 HL 139 (225)
Q Consensus 138 ~~ 139 (225)
+.
T Consensus 79 ~~ 80 (258)
T PRK06949 79 HA 80 (258)
T ss_pred HH
Confidence 64
No 227
>PRK01844 hypothetical protein; Provisional
Probab=26.13 E-value=54 Score=25.12 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=16.0
Q ss_pred CCCcchhHHHHHHHhhCC
Q psy10308 65 TPQIDGSTLKTLCVQHGP 82 (225)
Q Consensus 65 tpQide~tLr~Lc~qhGp 82 (225)
.|.|+|+-+|++++|-|.
T Consensus 36 NPpine~mir~Mm~QMGq 53 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQ 53 (72)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 478999999999999884
No 228
>KOG0129|consensus
Probab=26.09 E-value=1.7e+02 Score=29.89 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=48.9
Q ss_pred eEEecCCCCCcchhHHHHHHH-hhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCV-QHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGN 111 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~-qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~a 111 (225)
-|+|-+|+--+..++|..|+. -||-|.=+-|..+ +|.+=|-|+.-+-=.|||.+
T Consensus 372 TVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 372 TVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 478889998999999999999 8999999999766 99999999999988999986
No 229
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.01 E-value=2.9e+02 Score=22.72 Aligned_cols=70 Identities=11% Similarity=0.140 Sum_probs=39.3
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCC-eeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGP-LQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGp-V~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
.++|.+-+-.|--...+.| .++|. |+ ++-....++++++.+.+......-..+.+++.++++|.+++
T Consensus 6 ~vlItGa~g~iG~~~a~~l-~~~g~~v~-----------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 73 (250)
T PRK08063 6 VALVTGSSRGIGKAIALRL-AEEGYDIA-----------VNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMF 73 (250)
T ss_pred EEEEeCCCchHHHHHHHHH-HHCCCEEE-----------EEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHH
Confidence 5778888877765555555 45552 22 11122333343433333221111234778999999999998
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
++.
T Consensus 74 ~~~ 76 (250)
T PRK08063 74 AQI 76 (250)
T ss_pred HHH
Confidence 875
No 230
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=25.97 E-value=81 Score=23.56 Aligned_cols=46 Identities=9% Similarity=0.150 Sum_probs=32.0
Q ss_pred eEEecCCCCCcchhHHHHHHH-------hhCCeeEEEe--cCCCceEEEEeCCHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCV-------QHGPLQNFHL--YLNHSLALAKYSTRE 103 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~-------qhGpV~tfhl--nl~~G~AlVrYstke 103 (225)
+|+.++|+..++.++|..+-. ++-+|.=++- ..++|-.||-|.=.+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~ 56 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPD 56 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCC
Confidence 578899999999988877654 4444444443 455889999886543
No 231
>cd07077 ALDH-like NAD(P)+-dependent aldehyde dehydrogenase-like (ALDH-like) family. The aldehyde dehydrogenase-like (ALDH-like) group of the ALDH superfamily of NAD(P)+-dependent enzymes which, in general, oxidize a wide range of endogenous and exogenous aliphatic and aromatic aldehydes to their corresponding carboxylic acids and play an important role in detoxification. This group includes families ALDH18, ALDH19, and ALDH20 and represents such proteins as gamma-glutamyl phosphate reductase, LuxC-like acyl-CoA reductase, and coenzyme A acylating aldehyde dehydrogenase. All of these proteins have a conserved cysteine that aligns with the catalytic cysteine of the ALDH group.
Probab=25.92 E-value=1.4e+02 Score=27.86 Aligned_cols=47 Identities=9% Similarity=-0.088 Sum_probs=35.9
Q ss_pred EEEEeCCHHHHH-HHHhhhccceecCceEEEeCCChHHHHHHHHhhccc
Q psy10308 95 ALAKYSTREEAI-KAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSAT 142 (225)
Q Consensus 95 AlVrYstkeEA~-kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~~~ 142 (225)
.+++|++.|||. .||.-+|.+..+ -+-.|--.+.+.+.+|.+++...
T Consensus 301 ~v~~~~~~~eai~~ai~~~n~~~~g-l~~~Ift~d~~~~~~~~~~l~~G 348 (397)
T cd07077 301 CQFRVLDVISAVENAWMIIESGGGP-HTRCVYTHKINKVDDFVQYIDTA 348 (397)
T ss_pred EEEEEcchHHHHHHHHHHHHhcCCC-CceEEEeCCHHHHHHHHHhCCEE
Confidence 468999999886 678777877653 36666667789999999988644
No 232
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=25.89 E-value=1.9e+02 Score=28.42 Aligned_cols=65 Identities=22% Similarity=0.327 Sum_probs=42.4
Q ss_pred CcchhHHHHHHHhhCCe-eEEEecCCCceEEEEeCCHHHHHHHHhhh--ccceecCceEEEeCCC-hHHH-HHHHHhh
Q psy10308 67 QIDGSTLKTLCVQHGPL-QNFHLYLNHSLALAKYSTREEAIKAQGNL--NNCILGNTTIFAEAPS-DAEV-QSLLAHL 139 (225)
Q Consensus 67 Qide~tLr~Lc~qhGpV-~tfhlnl~~G~AlVrYstkeEA~kAi~aL--n~c~Lg~ttI~aeFAs-e~ev-~~~~~~~ 139 (225)
.|++ +|-.++.+|+++ +..|+|=.+- ..++|.+|++.| .|+.+++++.+.+-.+ +.|+ ..+++.+
T Consensus 203 RIT~-ell~~Lk~~~~~~v~~h~nhp~E-------it~~a~~Al~~L~~aGI~l~nQsVLLkGVND~~~~l~~L~~~L 272 (417)
T TIGR03820 203 RITD-ELVAILKKHHPVWLNTHFNHPRE-------ITASSKKALAKLADAGIPLGNQSVLLAGVNDCPRIMKKLVHKL 272 (417)
T ss_pred ccCH-HHHHHHHhcCCeEEEEeCCChHh-------ChHHHHHHHHHHHHcCCEEEeeceEECCcCCCHHHHHHHHHHH
Confidence 4765 566677888864 3466653332 258899999999 4699999996555554 4454 3444433
No 233
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.69 E-value=2.4e+02 Score=27.31 Aligned_cols=82 Identities=17% Similarity=0.310 Sum_probs=51.5
Q ss_pred ceEEecCCCCC-cchhHHHHHHHhhCCe-eEEEecCCCce-----EEEEeCCHHHHHHHHhhhcc----ceecCceEEEe
Q psy10308 57 TWVLLKNLTPQ-IDGSTLKTLCVQHGPL-QNFHLYLNHSL-----ALAKYSTREEAIKAQGNLNN----CILGNTTIFAE 125 (225)
Q Consensus 57 ~wLvL~NLtpQ-ide~tLr~Lc~qhGpV-~tfhlnl~~G~-----AlVrYstkeEA~kAi~aLn~----c~Lg~ttI~ae 125 (225)
.||.+.-++|. +++ +|-+++.+.|.+ ..+||.+..|. .+=|--+.++..+|++.+.. +.+ .++|++=
T Consensus 234 ~~ir~~~~~p~~~~~-ell~~m~~~~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p~i~i-~td~IvG 311 (449)
T PRK14332 234 ERIRFTSPHPKDFPD-HLLSLMAKNPRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVPDVGI-TTDIIVG 311 (449)
T ss_pred ceEEEECCCcccCCH-HHHHHHHhCCCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCCCCEE-EEEEEee
Confidence 36655555543 554 566777888885 68888655443 23355588888888888754 333 3569999
Q ss_pred CCC--hHHHH---HHHHhhc
Q psy10308 126 APS--DAEVQ---SLLAHLS 140 (225)
Q Consensus 126 FAs--e~ev~---~~~~~~~ 140 (225)
|+. |+|++ +|+..++
T Consensus 312 fPgET~edf~~tl~~v~~l~ 331 (449)
T PRK14332 312 FPNETEEEFEDTLAVVREVQ 331 (449)
T ss_pred CCCCCHHHHHHHHHHHHhCC
Confidence 977 55564 4444443
No 234
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.61 E-value=1e+02 Score=29.50 Aligned_cols=82 Identities=13% Similarity=0.254 Sum_probs=51.2
Q ss_pred eEEecCCCCC-cchhHHHHHHHhhCCe-eEEEecCCCce-----EEEEeCCHHHHHHHHhhhccce---ecCceEEEeCC
Q psy10308 58 WVLLKNLTPQ-IDGSTLKTLCVQHGPL-QNFHLYLNHSL-----ALAKYSTREEAIKAQGNLNNCI---LGNTTIFAEAP 127 (225)
Q Consensus 58 wLvL~NLtpQ-ide~tLr~Lc~qhGpV-~tfhlnl~~G~-----AlVrYstkeEA~kAi~aLn~c~---Lg~ttI~aeFA 127 (225)
+|.+..++|. +++ +|-+++.+++.+ ..|||.+..|. .+=|--+.++..++++.|+... .-.++|++=|+
T Consensus 239 rir~~~~~p~~~~~-eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i~i~~d~IvGfP 317 (448)
T PRK14333 239 RIRFATSHPRYFTE-RLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDASISADAIVGFP 317 (448)
T ss_pred EEEECCCChhhhhH-HHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEEeeEEEECC
Confidence 5666556554 444 455566777764 77788655443 3444458888888888886541 12566888888
Q ss_pred ChH--HH---HHHHHhhc
Q psy10308 128 SDA--EV---QSLLAHLS 140 (225)
Q Consensus 128 se~--ev---~~~~~~~~ 140 (225)
.|. |+ -+|+.+..
T Consensus 318 gET~edf~~tl~~l~~~~ 335 (448)
T PRK14333 318 GETEAQFENTLKLVEEIG 335 (448)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 854 34 45666554
No 235
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=25.22 E-value=1e+02 Score=24.13 Aligned_cols=48 Identities=15% Similarity=0.247 Sum_probs=30.9
Q ss_pred hHHHHHHH-hhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccc--eecCceE
Q psy10308 71 STLKTLCV-QHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNC--ILGNTTI 122 (225)
Q Consensus 71 ~tLr~Lc~-qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c--~Lg~ttI 122 (225)
..|+.+|. .|=||. ||....+ .+.|=...+++.|++.++.. .=.|..|
T Consensus 25 ~~iq~~c~v~F~Pv~-fh~~~~~---a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki 75 (88)
T PF09162_consen 25 NSIQSHCSVPFTPVD-FHYEKNR---AQFFVEDASTASALKDVSRKICDEDGFKI 75 (88)
T ss_dssp HHHHHHSSS----EE-EEEETTE---EEEEESSHHHHHHHHTTTTTEEBTTSBEE
T ss_pred HHHHHHCCCCeeeee-eeeeCCE---EEEEeCCHHHHHHHHHCCCceECCCCCEE
Confidence 45778885 777776 8876553 67777788899999999873 3344443
No 236
>PRK08589 short chain dehydrogenase; Validated
Probab=25.16 E-value=2.9e+02 Score=23.60 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=40.1
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.++|++-+.-|-....+.|. +.|--+ ++-+.+ +++++.++.+..-.-.-..+.+++.++++|..+++
T Consensus 8 ~vlItGas~gIG~aia~~l~-~~G~~v-----------i~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 74 (272)
T PRK08589 8 VAVITGASTGIGQASAIALA-QEGAYV-----------LAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFAS 74 (272)
T ss_pred EEEEECCCchHHHHHHHHHH-HCCCEE-----------EEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHH
Confidence 57788888777666655554 445311 111233 55555555542110012347889999999988888
Q ss_pred hhc
Q psy10308 138 HLS 140 (225)
Q Consensus 138 ~~~ 140 (225)
+..
T Consensus 75 ~~~ 77 (272)
T PRK08589 75 EIK 77 (272)
T ss_pred HHH
Confidence 753
No 237
>cd07081 ALDH_F20_ACDH_EutE-like Coenzyme A acylating aldehyde dehydrogenase (ACDH), Ethanolamine utilization protein EutE, and related proteins. Coenzyme A acylating aldehyde dehydrogenase (ACDH), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, acetylating (EC=1.2.1.10), functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA. The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH, and may be critical enzymes in the fermentative pathway.
Probab=24.94 E-value=4.7e+02 Score=25.31 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=41.8
Q ss_pred EEecCCC--CCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeCCC---hHHH
Q psy10308 59 VLLKNLT--PQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEAPS---DAEV 132 (225)
Q Consensus 59 LvL~NLt--pQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeFAs---e~ev 132 (225)
++|.+++ ++++. +++ ..||||+. +++|++.|||.+..... |...++ -+--|--.+ .+.+
T Consensus 310 ~i~~~~~~~~~~~i--~~e--E~FGPVl~----------v~~~~~~dEAi~~aN~~~n~~~~G-Lsa~V~T~d~~~~~~a 374 (439)
T cd07081 310 ILIGEVTSLAEHEP--FAH--EKLSPVLA----------MYRAANFADADAKALALKLEGGCG-HTSAMYSDNIKAIENM 374 (439)
T ss_pred EEEEecCCCCCCch--hhh--CccCceEE----------EEEcCCHHHHHHHHHHHhhccCCC-ceEEEECCCcchHHHH
Confidence 4666666 54432 222 56899976 56899999987655433 233333 233333345 5788
Q ss_pred HHHHHhhccc
Q psy10308 133 QSLLAHLSAT 142 (225)
Q Consensus 133 ~~~~~~~~~~ 142 (225)
.+|..++..+
T Consensus 375 ~~~a~~l~~G 384 (439)
T cd07081 375 NQFANAMKTS 384 (439)
T ss_pred HHHHhhCCce
Confidence 9999988665
No 238
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=24.92 E-value=1.9e+02 Score=27.52 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=39.5
Q ss_pred EecCCCCCcchhHHHHHHH-hhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 60 LLKNLTPQIDGSTLKTLCV-QHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~-qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
+|.++++.+. -+.. .||||+. +++|++.||| |+.+|.+..+ -+..|---+.+.+.+|.++
T Consensus 346 vl~~v~~~~~-----i~~eE~FGPvl~----------i~~~~~~~ea---i~~~n~~~~g-L~a~vft~d~~~~~~~~~~ 406 (456)
T cd07107 346 VFADVTPGMR-----IAREEIFGPVLS----------VLRWRDEAEM---VAQANGVEYG-LTAAIWTNDISQAHRTARR 406 (456)
T ss_pred EEECCCCCCh-----hhhCCCCCceEE----------EEeeCCHHHH---HHHHhCCCCc-ceEEEECCCHHHHHHHHHh
Confidence 6778776432 1223 4899986 5578888775 4555666544 2333333457778888888
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 407 l~~G 410 (456)
T cd07107 407 VEAG 410 (456)
T ss_pred cCcC
Confidence 7643
No 239
>cd07136 ALDH_YwdH-P39616 Bacillus subtilis aldehyde dehydrogenase ywdH-like. Uncharacterized Bacillus subtilis ywdH aldehyde dehydrogenase (locus P39616) most closely related to the ALDHs and fatty ALDHs of families 3 and 14, and similar sequences, are included in this CD.
Probab=24.91 E-value=3e+02 Score=26.61 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=40.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
-+|.++++++. -+++ .-||||+. +++|++.||| |+.+|.+..+= +..|---+.+.+.+|.++
T Consensus 315 tvl~~v~~~~~--~~~e--E~FGPVl~----------v~~~~~~~ea---i~~aN~~~~gL-~a~v~t~d~~~a~~~~~~ 376 (449)
T cd07136 315 TILDNVTWDDP--VMQE--EIFGPILP----------VLTYDTLDEA---IEIIKSRPKPL-ALYLFSEDKKVEKKVLEN 376 (449)
T ss_pred EEEecCCCcCh--HHhc--cccCCeeE----------EEEeCCHHHH---HHHHhCCCCCc-eEEEECCCHHHHHHHHHh
Confidence 47888887543 2222 46899987 4578887765 45555554332 333333456668889988
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 377 l~~G 380 (449)
T cd07136 377 LSFG 380 (449)
T ss_pred CCcc
Confidence 8654
No 240
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=24.48 E-value=60 Score=21.79 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=13.9
Q ss_pred eCCChHHHHHHHHhhc
Q psy10308 125 EAPSDAEVQSLLAHLS 140 (225)
Q Consensus 125 eFAse~ev~~~~~~~~ 140 (225)
+||+.+|++.|+.++.
T Consensus 10 ~~a~~eel~~Y~~~L~ 25 (36)
T cd00126 10 DDASPEELRQYLAALR 25 (36)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7899999999998764
No 241
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=24.42 E-value=1.9e+02 Score=27.44 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=42.0
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.|+++++.- +++ ..||||+. +++|++.|||.+. +|.+..+ -+..|--.+++.+.++.++
T Consensus 354 tvl~~~~~~~~~--~~~--E~fgPvl~----------v~~~~~~~eai~~---~n~~~~g-l~a~v~s~d~~~~~~~~~~ 415 (462)
T PF00171_consen 354 TVLEDVPPDMPI--MQE--EIFGPVLP----------VVPYDDLDEAIAL---ANDSEYG-LTASVFSRDESRAERLARR 415 (462)
T ss_dssp EEEESEHTTSHH--HHS--C-SSSEEE----------EEEESSHHHHHHH---HHHSSEE-SEEEEECSBHHHHHHHHHH
T ss_pred cccccccccccc--ccc--ccccccce----------ecccccchhhhhc---ccccCCC-ceeEEeccccccccccccc
Confidence 477887776532 111 57899987 4688887777554 4545444 3445555567888999998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 416 l~~g 419 (462)
T PF00171_consen 416 LEAG 419 (462)
T ss_dssp STSS
T ss_pred cccc
Confidence 8543
No 242
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=24.38 E-value=87 Score=21.55 Aligned_cols=40 Identities=8% Similarity=0.131 Sum_probs=21.7
Q ss_pred HHHHHHHhh-CCeeEEEecCCCceEEEEeCCHHHHHHHHhhh
Q psy10308 72 TLKTLCVQH-GPLQNFHLYLNHSLALAKYSTREEAIKAQGNL 112 (225)
Q Consensus 72 tLr~Lc~qh-GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL 112 (225)
++-++|.++ .+|..+++...+..+++|..+ ++.++|++.|
T Consensus 17 ~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~-~~~~~~~~~L 57 (66)
T cd04908 17 AVTEILSEAGINIRALSIADTSEFGILRLIV-SDPDKAKEAL 57 (66)
T ss_pred HHHHHHHHCCCCEEEEEEEecCCCCEEEEEE-CCHHHHHHHH
Confidence 344455454 478888775443345666555 3344555555
No 243
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=24.37 E-value=2e+02 Score=27.57 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=41.7
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+|.++++.++ .+++ ..||||+.+ ++|++.|||. +.+|.+..+ -+..|--.+.+.+.+|.+++
T Consensus 367 vl~~v~~~~~--~~~e--E~FgPvl~v----------~~~~~~deai---~~~n~~~~g-L~a~v~t~d~~~~~~~~~~l 428 (477)
T cd07113 367 LVLARSADSR--LMRE--ETFGPVVSF----------VPYEDEEELI---QLINDTPFG-LTASVWTNNLSKALRYIPRI 428 (477)
T ss_pred EEecCCCCCh--HHhC--CCCCCeEEE----------EEeCCHHHHH---HHHhCCCCC-ceEEEECCCHHHHHHHHHhC
Confidence 6778877543 2222 468999874 5888888764 555666654 33333334677888998888
Q ss_pred ccc
Q psy10308 140 SAT 142 (225)
Q Consensus 140 ~~~ 142 (225)
..+
T Consensus 429 ~~G 431 (477)
T cd07113 429 EAG 431 (477)
T ss_pred Ccc
Confidence 643
No 244
>PRK12450 foldase protein PrsA; Reviewed
Probab=24.29 E-value=1.5e+02 Score=27.23 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=30.6
Q ss_pred CcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhc
Q psy10308 67 QIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLN 113 (225)
Q Consensus 67 Qide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn 113 (225)
.|++++++..|.+|-| .+++ . .|.+.++++|+++++.|.
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~~--~----~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMTA--E----IMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCHHHHHHHHHHhCc--ccee--E----EEEeCCHHHHHHHHHHHH
Confidence 4799999999999966 3332 1 367789999999999885
No 245
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=24.12 E-value=2.1e+02 Score=28.39 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=41.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.+.- +++ .-||||+. +++|++.|||. +.+|....+= +..|--.+.+.+.+|.++
T Consensus 421 tvl~~v~~d~~i--~~e--E~FGPVl~----------v~~~~d~deAi---~~aN~~~~GL-~a~VfT~d~~~a~~~~~~ 482 (538)
T PLN02466 421 TVFSNVQDDMLI--AQD--EIFGPVQS----------ILKFKDLDEVI---RRANNTRYGL-AAGVFTQNLDTANTLSRA 482 (538)
T ss_pred EEEecCCCCCch--hcC--CccCcEEE----------EEEeCCHHHHH---HHHhCCCCCc-eEEEEcCCHHHHHHHHHh
Confidence 467788776431 111 45899976 56888888764 4445544333 444444667789999999
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 483 l~aG 486 (538)
T PLN02466 483 LRVG 486 (538)
T ss_pred CCee
Confidence 8654
No 246
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=24.06 E-value=50 Score=23.57 Aligned_cols=45 Identities=11% Similarity=0.137 Sum_probs=25.2
Q ss_pred EEEeCCHHHHHHHHhhhcccee-cCceEEEeCCChHHHHHHHHhhc
Q psy10308 96 LAKYSTREEAIKAQGNLNNCIL-GNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 96 lVrYstkeEA~kAi~aLn~c~L-g~ttI~aeFAse~ev~~~~~~~~ 140 (225)
.|+|+...++-+.+.....+.. .+..+.+.+.++.+++.+|+.+.
T Consensus 16 ~i~~~~~~~~l~~~~~v~~v~~~~~~~~~i~l~~~~~~~~ll~~l~ 61 (84)
T PF13732_consen 16 TIETDGDLEELEELPGVESVEQDGDGKLRIKLEDEETANELLQELI 61 (84)
T ss_pred EEEECCCHHHHhhCCCeEEEEEeCCcEEEEEECCcccHHHHHHHHH
Confidence 4555544433333333333444 33338888888888888877764
No 247
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=24.00 E-value=3.9e+02 Score=25.76 Aligned_cols=69 Identities=16% Similarity=0.088 Sum_probs=40.7
Q ss_pred hHHHHHHHhhCCeeEEE-ecCCCceEEEE-eC----CHHHHHHHHhhh--ccceec---CceEEEeC---CChHHHHHHH
Q psy10308 71 STLKTLCVQHGPLQNFH-LYLNHSLALAK-YS----TREEAIKAQGNL--NNCILG---NTTIFAEA---PSDAEVQSLL 136 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfh-lnl~~G~AlVr-Ys----tkeEA~kAi~aL--n~c~Lg---~ttI~aeF---Ase~ev~~~~ 136 (225)
+.|++|..+|+-|.++. .++--|+-|+. .. ..+.|.+.+..+ +|+.+. +..|.+.- -+|+||..++
T Consensus 363 ~~L~~l~~~~~~i~~vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~ 442 (459)
T PRK06082 363 ERLLEMKAKYPLIGDVRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQAL 442 (459)
T ss_pred HHHHHHHhhCCCeeeeeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHH
Confidence 67888888998777766 34555666653 11 123344443333 454432 34566652 4899998887
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
+-+
T Consensus 443 ~~l 445 (459)
T PRK06082 443 AIL 445 (459)
T ss_pred HHH
Confidence 754
No 248
>KOG3424|consensus
Probab=23.59 E-value=2.1e+02 Score=24.26 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=30.8
Q ss_pred EEecCCCCC---cchhHHHHHHHhh-----CCeeEEEe------cCCCceEEEEeCCHHHHHH
Q psy10308 59 VLLKNLTPQ---IDGSTLKTLCVQH-----GPLQNFHL------YLNHSLALAKYSTREEAIK 107 (225)
Q Consensus 59 LvL~NLtpQ---ide~tLr~Lc~qh-----GpV~tfhl------nl~~G~AlVrYstkeEA~k 107 (225)
++|.=|||- +.-++||+-.++- -.|+-|-+ ..+.|||+| |++.|.|.|
T Consensus 23 mvvdvlHPG~a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 23 MVVDVLHPGKANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred eeEEEecCCCCCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 456667764 5667777655442 23444444 366899998 999997654
No 249
>PLN02936 epsilon-ring hydroxylase
Probab=23.47 E-value=99 Score=29.26 Aligned_cols=46 Identities=13% Similarity=-0.056 Sum_probs=28.5
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHH
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKA 108 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kA 108 (225)
.|.++.-+--..-|+++|.+||+|..+++... -+|-..+.|.+++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~yG~i~~~~~g~~---~~vvv~~pe~~~~i 74 (489)
T PLN02936 29 DVTDLLGGALFLPLFKWMNEYGPVYRLAAGPR---NFVVVSDPAIAKHV 74 (489)
T ss_pred hHHHHhccHHHHHHHHHHHHcCCEEEEccCCc---cEEEEcCHHHHHHH
Confidence 34555444456789999999999988876431 23444444544433
No 250
>PRK12866 YciI-like protein; Reviewed
Probab=23.35 E-value=87 Score=24.21 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=19.1
Q ss_pred cCceEEEeCCChHHHHHHHHhhc
Q psy10308 118 GNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 118 g~ttI~aeFAse~ev~~~~~~~~ 140 (225)
++..|++++++.+||+.|+++-+
T Consensus 48 ~G~~ii~~a~s~~e~~~~l~~DP 70 (97)
T PRK12866 48 DGAVLVFEGDSPAAAEAFARADP 70 (97)
T ss_pred CcEEEEEEeCCHHHHHHHHHcCC
Confidence 36668899999999999999743
No 251
>PLN03034 phosphoglycerate kinase; Provisional
Probab=23.30 E-value=1.8e+02 Score=29.21 Aligned_cols=71 Identities=23% Similarity=0.211 Sum_probs=47.8
Q ss_pred hHHHHHHHhhCCeeE-EEecCCCc---------------------eEEEEeCCHHHHHHHHhhhcc---ceecCceEE-E
Q psy10308 71 STLKTLCVQHGPLQN-FHLYLNHS---------------------LALAKYSTREEAIKAQGNLNN---CILGNTTIF-A 124 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~t-fhlnl~~G---------------------~AlVrYstkeEA~kAi~aLn~---c~Lg~ttI~-a 124 (225)
.|++.|+.+-.+|+= -|+++-+| +.||.....++|+++|+.|.. +.|.|.-.. -
T Consensus 122 pTI~~L~~~gakvVl~SHlGRPkg~~~~~SL~pva~~Ls~lL~~~V~fv~d~~G~~~~~~i~~l~~GeVlLLENvRF~~e 201 (481)
T PLN03034 122 PTIKYLISNGAKVILSSHLGRPKGVTPKFSLAPLVPRLSELLGIQVVKADDCIGPEVEKLVASLPEGGVLLLENVRFYKE 201 (481)
T ss_pred HHHHHHHHCCCeEEEEEecCCCCCCCcccCHHHHHHHHHHHhCCCeEECCCCCCHHHHHHHhcCCCCcEEEEeccCcCcc
Confidence 789999988887665 56765554 566665667899999999954 344444432 2
Q ss_pred eCCChHHHHHHHHhhcc
Q psy10308 125 EAPSDAEVQSLLAHLSA 141 (225)
Q Consensus 125 eFAse~ev~~~~~~~~~ 141 (225)
|-.+|++..+.|+.+..
T Consensus 202 E~~nd~~fa~~LA~l~D 218 (481)
T PLN03034 202 EEKNEPEFAKKLASLAD 218 (481)
T ss_pred cccCcHHHHHHHHhhCC
Confidence 44566677777766544
No 252
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=23.30 E-value=2.5e+02 Score=29.44 Aligned_cols=67 Identities=15% Similarity=0.094 Sum_probs=42.3
Q ss_pred ecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhhc
Q psy10308 61 LKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 61 L~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~ 140 (225)
|.+++++.+ +.+ ..||||+. +++|++.|||.+-+....+..=.+.+..+---+++.+.+|..++.
T Consensus 330 l~~v~~~~~---~~~--E~fgPVl~----------v~~~~~~deAi~~~n~~~~~~~~gl~~~i~t~d~~~~~~~~~~l~ 394 (862)
T PRK13805 330 VKGVGESEP---LSH--EKLSPVLA----------MYKAKDFEDAVEKAEKLVEFGGLGHTAVIYTNDDELIKEFGLRMK 394 (862)
T ss_pred cCCCCCCCc---chh--cccCcEEE----------EEEECCHHHHHHHHHHHHhcCCCCcEEEEECCCHHHHHHHHhhCC
Confidence 556666544 222 45799986 568999999877665531111134455555666788899988886
Q ss_pred cc
Q psy10308 141 AT 142 (225)
Q Consensus 141 ~~ 142 (225)
..
T Consensus 395 ~g 396 (862)
T PRK13805 395 AC 396 (862)
T ss_pred cc
Confidence 65
No 253
>PRK05943 50S ribosomal protein L25; Reviewed
Probab=23.15 E-value=91 Score=23.86 Aligned_cols=52 Identities=4% Similarity=-0.038 Sum_probs=35.6
Q ss_pred CCCCCcchhHHHHHHHhhC---CeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeC
Q psy10308 63 NLTPQIDGSTLKTLCVQHG---PLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA 126 (225)
Q Consensus 63 NLtpQide~tLr~Lc~qhG---pV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF 126 (225)
+++=++++.+|+.++..+| .|++++++=..-.+||+ .+..-++.+.-|+|||
T Consensus 37 ~~~i~v~~~el~k~l~~~~~~~~~i~L~v~g~~~~v~ik------------evQ~~pv~~~i~HvDF 91 (94)
T PRK05943 37 PVSIVLDHKDVINLQAKAEFYKEVITLVIDGKEVKVKVQ------------AVQRHPFKPKLEHIDF 91 (94)
T ss_pred cEEEEEcHHHHHHHHhcCCCcceEEEEEECCEEEEEEEe------------eeecCcCCCCeEeEee
Confidence 3444799999999998876 37888875333455543 3344567777788887
No 254
>PRK14998 cold shock-like protein CspD; Provisional
Probab=22.83 E-value=56 Score=24.26 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=16.6
Q ss_pred HhhCCeeEEEecCCCceEEEEeCC
Q psy10308 78 VQHGPLQNFHLYLNHSLALAKYST 101 (225)
Q Consensus 78 ~qhGpV~tfhlnl~~G~AlVrYst 101 (225)
|+.|.|+.|. ..|||.||+=+.
T Consensus 1 M~~G~Vkwfn--~~kGfGFI~~~~ 22 (73)
T PRK14998 1 METGTVKWFN--NAKGFGFICPEG 22 (73)
T ss_pred CCCeEEEEEe--CCCceEEEecCC
Confidence 3457777775 889999998665
No 255
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=22.73 E-value=3.6e+02 Score=22.26 Aligned_cols=67 Identities=12% Similarity=0.194 Sum_probs=39.5
Q ss_pred CCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc---ceecCceEEE------eCCChHHHH
Q psy10308 63 NLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN---CILGNTTIFA------EAPSDAEVQ 133 (225)
Q Consensus 63 NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~---c~Lg~ttI~a------eFAse~ev~ 133 (225)
+++||+==++|..|-.|-=+|-.+++ |. ....+..+|-+.|+. |.+...+|.+ +|.+|+|.+
T Consensus 1 G~sPqVvTEtl~aL~~~g~~i~ev~l--------I~-T~~~~v~~~~~~l~~~l~~~~~~~~i~~i~~~~~DI~t~~d~~ 71 (124)
T TIGR03642 1 GTSPMVITEAIDYLKKKGEPISDVIL--------IY-TKDPYVLSALRALKDSLLKKFYKAEVHKIPLKFDDILSDEDIL 71 (124)
T ss_pred CCCcccHHHHHHHHHhcCCCCCeEEE--------EE-cCCHHHHHHHHHHHHHhHHhcCCcEEEEeccCccccCCHHHHH
Confidence 46788888999999766556666664 22 111222333333222 4555555444 677899988
Q ss_pred HHHHh
Q psy10308 134 SLLAH 138 (225)
Q Consensus 134 ~~~~~ 138 (225)
.|++-
T Consensus 72 ~~~~~ 76 (124)
T TIGR03642 72 TFMSI 76 (124)
T ss_pred HHHHH
Confidence 87764
No 256
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=22.61 E-value=3.2e+02 Score=25.90 Aligned_cols=64 Identities=23% Similarity=0.250 Sum_probs=39.3
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+|.+++++.. -+++ ..||||+. +++|++.|||.+-+ |.... +-+..+---+.+.+.+|.+++
T Consensus 347 vl~~~~~~~~--i~~~--E~fgPvl~----------v~~~~~~~eai~~~---n~~~~-gL~~~v~t~d~~~~~~~~~~~ 408 (456)
T cd07145 347 VLENDTPDMI--VMKE--EVFGPVLP----------IAKVKDDEEAVEIA---NSTEY-GLQASVFTNDINRALKVAREL 408 (456)
T ss_pred eecCCCCCCh--HhhC--CCCCceEE----------EEEECCHHHHHHHH---hCCCC-CceEEEECCCHHHHHHHHHhC
Confidence 6788876432 1211 46899987 45888888776544 44332 233344345677788898887
Q ss_pred cc
Q psy10308 140 SA 141 (225)
Q Consensus 140 ~~ 141 (225)
..
T Consensus 409 ~~ 410 (456)
T cd07145 409 EA 410 (456)
T ss_pred Cc
Confidence 54
No 257
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=22.57 E-value=2.2e+02 Score=27.21 Aligned_cols=65 Identities=23% Similarity=0.297 Sum_probs=42.0
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+|.++++... .+++ .-||||+.+ ++|++.|||.+ .+|.+.. +-+..|--.+.+.+.+|.+++
T Consensus 365 vl~~~~~~~~--~~~e--E~FgPvl~v----------~~~~~~deai~---~~N~~~~-gL~a~v~t~d~~~~~~~~~~l 426 (478)
T cd07085 365 ILDNVTPDMK--IYKE--EIFGPVLSI----------VRVDTLDEAIA---IINANPY-GNGAAIFTRSGAAARKFQREV 426 (478)
T ss_pred EEecCCCCCh--hhhC--cCcCCeEEE----------EEeCCHHHHHH---HHhCCCC-CceEEEECCCHHHHHHHHHhC
Confidence 6777776532 1111 468999874 57888887654 4565554 345555556678889999987
Q ss_pred ccc
Q psy10308 140 SAT 142 (225)
Q Consensus 140 ~~~ 142 (225)
...
T Consensus 427 ~~G 429 (478)
T cd07085 427 DAG 429 (478)
T ss_pred Ccc
Confidence 544
No 258
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=22.49 E-value=71 Score=23.88 Aligned_cols=18 Identities=22% Similarity=0.547 Sum_probs=15.9
Q ss_pred CCCcchhHHHHHHHhhCC
Q psy10308 65 TPQIDGSTLKTLCVQHGP 82 (225)
Q Consensus 65 tpQide~tLr~Lc~qhGp 82 (225)
.|.|+|+.+|++++|-|.
T Consensus 29 NPpine~mir~M~~QMG~ 46 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGR 46 (64)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 467999999999999884
No 259
>cd07132 ALDH_F3AB Aldehyde dehydrogenase family 3 members A1, A2, and B1 and related proteins. NAD(P)+-dependent, aldehyde dehydrogenase, family 3 members A1 and B1 (ALDH3A1, ALDH3B1, EC=1.2.1.5) and fatty aldehyde dehydrogenase, family 3 member A2 (ALDH3A2, EC=1.2.1.3), and similar sequences are included in this CD. Human ALDH3A1 is a homodimer with a critical role in cellular defense against oxidative stress; it catalyzes the oxidation of various cellular membrane lipid-derived aldehydes. Corneal crystalline ALDH3A1 protects the cornea and underlying lens against UV-induced oxidative stress. Human ALDH3A2, a microsomal homodimer, catalyzes the oxidation of long-chain aliphatic aldehydes to fatty acids. Human ALDH3B1 is highly expressed in the kidney and liver and catalyzes the oxidation of various medium- and long-chain saturated and unsaturated aliphatic aldehydes.
Probab=22.48 E-value=3.5e+02 Score=25.82 Aligned_cols=65 Identities=15% Similarity=0.267 Sum_probs=40.0
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+|.++++.+. .+++ ..||||+.+ ++|++.|||. +..|.+..+ -+..+---+.+.+.+|.+++
T Consensus 316 vl~~v~~~~~--~~~e--E~FgPvl~v----------~~~~~~~eai---~~an~~~~g-L~a~i~t~d~~~~~~~~~~l 377 (443)
T cd07132 316 VLTDVKPSDP--VMQE--EIFGPILPI----------VTVNNLDEAI---EFINSREKP-LALYVFSNNKKVINKILSNT 377 (443)
T ss_pred EEeCCCCCCh--HHhc--cccCceeEE----------EEeCCHHHHH---HHHhcCCCC-cEEEEECCCHHHHHHHHHhC
Confidence 7788877432 2222 468999875 5688877755 444555443 33333334677788898887
Q ss_pred ccc
Q psy10308 140 SAT 142 (225)
Q Consensus 140 ~~~ 142 (225)
...
T Consensus 378 ~~G 380 (443)
T cd07132 378 SSG 380 (443)
T ss_pred Ccc
Confidence 654
No 260
>PF03703 bPH_2: Bacterial PH domain; InterPro: IPR005182 A domain that is found in uncharacterised family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices.
Probab=22.34 E-value=1.5e+02 Score=20.34 Aligned_cols=38 Identities=8% Similarity=-0.101 Sum_probs=27.3
Q ss_pred HHHHHhhCCeeEEEecCCCce---EEEEeCCHHHHHHHHhh
Q psy10308 74 KTLCVQHGPLQNFHLYLNHSL---ALAKYSTREEAIKAQGN 111 (225)
Q Consensus 74 r~Lc~qhGpV~tfhlnl~~G~---AlVrYstkeEA~kAi~a 111 (225)
+.+|++.=.+-++++....+. ..++|-+.+||++..+.
T Consensus 39 q~~~~r~~g~~~i~i~~~~~~~~~~~i~~~~~~~a~~i~~~ 79 (80)
T PF03703_consen 39 QNPLQRLFGLGTIKIDTAGGSGEKIEIPFLSIEDAEEIYDW 79 (80)
T ss_pred cCHHHHhCccEEEEEEECCCCCceeEEecCCHHHHHHHHhh
Confidence 456666667778887655555 68888888888876653
No 261
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=22.17 E-value=2.9e+02 Score=26.37 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=50.0
Q ss_pred ceEEecCCCCC-cchhHHHHHHHhhCC-eeEEEecCCCce-----EEEEeCCHHHHHHHHhhhcc----ceecCceEEEe
Q psy10308 57 TWVLLKNLTPQ-IDGSTLKTLCVQHGP-LQNFHLYLNHSL-----ALAKYSTREEAIKAQGNLNN----CILGNTTIFAE 125 (225)
Q Consensus 57 ~wLvL~NLtpQ-ide~tLr~Lc~qhGp-V~tfhlnl~~G~-----AlVrYstkeEA~kAi~aLn~----c~Lg~ttI~ae 125 (225)
.||.+..+++. ++++.| +++.+.|+ +..+||.+..|. .+=|--+.++..++++.+.. +.+ .++|++=
T Consensus 230 ~~ir~~~~~p~~l~~ell-~~l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i~i-~~d~IvG 307 (438)
T TIGR01574 230 ERIRFTSSHPLDFDDDLI-EVFANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNVSI-STDIIVG 307 (438)
T ss_pred eEEEEecCCcccCCHHHH-HHHHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeE-eeCEEEe
Confidence 47777777764 666655 55577876 567788655443 23343477777777777653 333 5678898
Q ss_pred CCC--hHHHHHHHHh
Q psy10308 126 APS--DAEVQSLLAH 138 (225)
Q Consensus 126 FAs--e~ev~~~~~~ 138 (225)
|+. ++|++.-++.
T Consensus 308 ~PgEt~ed~~~tl~~ 322 (438)
T TIGR01574 308 FPGETEEDFEETLDL 322 (438)
T ss_pred CCCCCHHHHHHHHHH
Confidence 876 5566544443
No 262
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=22.02 E-value=1.4e+02 Score=28.67 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=49.7
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCC--------Cce--------EEEEeC-CHHHHHHHHhhhccceecCce
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN--------HSL--------ALAKYS-TREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~--------~G~--------AlVrYs-tkeEA~kAi~aLn~c~Lg~tt 121 (225)
|++-+.-..|+..+|..|-.+||+...|.+-+. +++ --|+|. ++++..+.++.+-. ++.=..
T Consensus 227 v~~I~~Gqlv~dg~l~~l~~~f~~~k~~~~el~~~~~~~~l~~l~d~~~~~~~~~~~~~~r~~~~~~i~~~~~-e~~v~D 305 (325)
T COG4586 227 VLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSLSQLALLGDVTIEEGLNIKNDVSREESADIIAKLLA-EFEVRD 305 (325)
T ss_pred eEEeeCCcEeecccHHHHHHHhCCceEEEEEEcccccchhccccchhhhhcccchhhcchhHHHHHHHHHHHH-hhhhcc
Confidence 566666677999999999999999999998433 121 136777 66666666665421 222222
Q ss_pred EEEeCCC-hHHHHHHHHh
Q psy10308 122 IFAEAPS-DAEVQSLLAH 138 (225)
Q Consensus 122 I~aeFAs-e~ev~~~~~~ 138 (225)
+.|+=.+ |+=|.||+++
T Consensus 306 l~v~d~~ie~vi~r~y~~ 323 (325)
T COG4586 306 LTVEDPEIEDVIRRIYQK 323 (325)
T ss_pred CCCCCCcHHHHHHHHHhc
Confidence 3344444 4445677765
No 263
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=22.00 E-value=38 Score=32.61 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=40.8
Q ss_pred CCCCCcchhH-----HHHHHHhhCCeeEEEec--CCCceEEEEeCCHHHHHHHHhhhcc
Q psy10308 63 NLTPQIDGST-----LKTLCVQHGPLQNFHLY--LNHSLALAKYSTREEAIKAQGNLNN 114 (225)
Q Consensus 63 NLtpQide~t-----Lr~Lc~qhGpV~tfhln--l~~G~AlVrYstkeEA~kAi~aLn~ 114 (225)
||..+||... +-...+++|+|-.-.++ .+.|+.||-+-..|+|+++++.|..
T Consensus 263 ~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~ 321 (345)
T COG0150 263 GLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKE 321 (345)
T ss_pred cceEEEcCCCCCCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHh
Confidence 4666677544 55556789988776665 5699999999999999999999976
No 264
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=21.90 E-value=2.8e+02 Score=22.71 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=38.5
Q ss_pred ccceEEecCCCCCc---------chhHHHHHHHhhC-CeeEEEec--CCCceEEEEeCCHHHHHHHHhhhc
Q psy10308 55 SGTWVLLKNLTPQI---------DGSTLKTLCVQHG-PLQNFHLY--LNHSLALAKYSTREEAIKAQGNLN 113 (225)
Q Consensus 55 ~~~wLvL~NLtpQi---------de~tLr~Lc~qhG-pV~tfhln--l~~G~AlVrYstkeEA~kAi~aLn 113 (225)
++..++|.|+|+|- -.+..|.++.++| +++.|.+- .-.=++.|+-.+..-+.++--+|.
T Consensus 8 m~~yvvL~n~Td~Gaktlke~p~R~~av~~~les~G~k~~~~y~T~GeYD~V~i~EapDda~~~~~~l~l~ 78 (104)
T COG4274 8 MMTYVVLSNFTDQGAKTLKETPKRAAAVRALLESMGGKVKEQYWTLGEYDVVAIVEAPDDAVATRFSLALA 78 (104)
T ss_pred hhhhhhhhhccHhHHHHHhhCHHHHHHHHHHHHHcCcEEEEEEEeeccccEEEEEecCCHHHHHHHHHHHH
Confidence 56679999999982 2367889999987 56666653 333456666665555555544443
No 265
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=21.67 E-value=2.2e+02 Score=27.32 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=40.4
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh-
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH- 138 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~- 138 (225)
+|.++++... .+++ ..||||+. +++|++.|||.+- +|.+..+ -+..|---+.+.+++|.++
T Consensus 364 vl~~~~~~~~--~~~e--E~FgPVl~----------v~~~~~~deai~~---~n~~~~g-L~a~v~t~d~~~a~~~~~~~ 425 (478)
T cd07086 364 IVTGVTDDAR--IVQE--ETFAPILY----------VIKFDSLEEAIAI---NNDVPQG-LSSSIFTEDLREAFRWLGPK 425 (478)
T ss_pred EecCCCCCCh--hhcC--CCcCCEEE----------EEEeCCHHHHHHH---HhCCCCc-ceEEEEcCCHHHHHHHHhcC
Confidence 6677776432 1111 46899976 5688888887543 4555443 4444444567888999998
Q ss_pred -hcc
Q psy10308 139 -LSA 141 (225)
Q Consensus 139 -~~~ 141 (225)
+..
T Consensus 426 ~~~~ 429 (478)
T cd07086 426 GSDC 429 (478)
T ss_pred cccc
Confidence 644
No 266
>PRK06172 short chain dehydrogenase; Provisional
Probab=21.61 E-value=3.8e+02 Score=22.18 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=42.2
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
..++|.+-+.-|-....+.|. +.|- ++ ++-+.+.++.+++.+.+....-.-..+.+++.++++|.+++
T Consensus 8 k~ilItGas~~iG~~ia~~l~-~~G~--~v---------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 75 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFA-REGA--KV---------VVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALV 75 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHH-HcCC--EE---------EEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 367888888777777666664 4452 11 12233445555554444321111235789999999998888
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
++.
T Consensus 76 ~~~ 78 (253)
T PRK06172 76 EQT 78 (253)
T ss_pred HHH
Confidence 765
No 267
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=21.52 E-value=2.7e+02 Score=26.87 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=41.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++... -+++ .-||||+. +++|++.|||.+- .|.+..+= +..|---+.+.+.+|.++
T Consensus 362 tvl~~v~~~~~--i~~e--E~FGPvl~----------v~~~~~~~eai~~---an~~~~gL-~a~vft~d~~~~~~~~~~ 423 (472)
T TIGR03374 362 TLLAGAKQDDA--IVQK--EVFGPVVS----------ITSFDDEEQVVNW---ANDSQYGL-ASSVWTKDVGRAHRLSAR 423 (472)
T ss_pred EEEeCCCCCCh--hhhC--CccCceEE----------EEEECCHHHHHHH---HhCCCCCc-eEEEECCCHHHHHHHHHh
Confidence 47788887643 1111 45899987 5688888876544 45444333 334444467788999998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 424 l~~G 427 (472)
T TIGR03374 424 LQYG 427 (472)
T ss_pred CCcc
Confidence 8654
No 268
>cd07095 ALDH_SGSD_AstD N-succinylglutamate 5-semialdehyde dehydrogenase, AstD-like. N-succinylglutamate 5-semialdehyde dehydrogenase or succinylglutamic semialdehyde dehydrogenase (SGSD, E. coli AstD, EC=1.2.1.71) involved in L-arginine degradation via the arginine succinyltransferase (AST) pathway and catalyzes the NAD+-dependent reduction of succinylglutamate semialdehyde into succinylglutamate.
Probab=21.19 E-value=2.9e+02 Score=26.29 Aligned_cols=51 Identities=24% Similarity=0.227 Sum_probs=34.7
Q ss_pred HhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhhccc
Q psy10308 78 VQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSAT 142 (225)
Q Consensus 78 ~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~~~ 142 (225)
..||||+. +++|++.+||.+- +|... .+-+..+--.+.+.+.+|.+++...
T Consensus 337 E~FgPvl~----------v~~~~~~~eai~~---~n~~~-~gL~a~v~s~d~~~a~~~~~~l~~G 387 (431)
T cd07095 337 EIFGPLLQ----------VYRYDDFDEAIAL---ANATR-FGLSAGLLSDDEALFERFLARIRAG 387 (431)
T ss_pred CCcCCeEE----------EEeeCCHHHHHHH---HhCCC-CCCeEEEEcCCHHHHHHHHHhCCcc
Confidence 45899976 5689988887654 34443 2345556566678889999988543
No 269
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=21.13 E-value=4.3e+02 Score=24.37 Aligned_cols=73 Identities=21% Similarity=0.237 Sum_probs=43.9
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc----ce-e-cC---ceEEEeC--
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN----CI-L-GN---TTIFAEA-- 126 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~----c~-L-g~---ttI~aeF-- 126 (225)
-++++ +.+++++.+.+-.+-. ...|++=|||-+||||.+-.+..-+ .+ + .| ..|.|+.
T Consensus 69 ~vyl~---~~~~~~~~~~l~~~L~--------~~~~V~~v~~vskeeal~~l~~~~g~~~~l~~l~~nPLP~si~V~~~~ 137 (309)
T PRK11026 69 TVYLD---KTLDDDAANAVVEQLK--------AEDGVEKVNYLSREEALGEFRNWSGFGGALDMLEENPLPAVAIIIPKL 137 (309)
T ss_pred EEEEC---CCCCHHHHHHHHHHHh--------CCCCcceEEEECHHHHHHHHHHhhCchHHHhhCcCCCCCCeEEEEecC
Confidence 35554 4677776666655432 3577889999999999876654211 11 1 12 1266654
Q ss_pred --CChHHHHHHHHhhcc
Q psy10308 127 --PSDAEVQSLLAHLSA 141 (225)
Q Consensus 127 --Ase~ev~~~~~~~~~ 141 (225)
.++++++.+-++...
T Consensus 138 ~~~~~~~~~~i~~~l~~ 154 (309)
T PRK11026 138 DFQSSEKLNTLRDRLAQ 154 (309)
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 366677777766543
No 270
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=21.10 E-value=2.9e+02 Score=26.06 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=40.7
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.+. -+++ ..||||+. +++|++.|||.+- +|....+ -+..+---+++.+.+|.++
T Consensus 343 tvl~~~~~~~~--i~~~--E~FgPvl~----------v~~~~~~~eai~~---~n~~~~g-L~~~i~t~d~~~a~~~~~~ 404 (453)
T cd07094 343 TVLEDVPRDTK--LSTE--ETFGPVVP----------IIRYDDFEEAIRI---ANSTDYG-LQAGIFTRDLNVAFKAAEK 404 (453)
T ss_pred EEEeCCCCCCh--hhhC--CCcCceEE----------EEEeCCHHHHHHH---HhCCCCC-CeeEEECCCHHHHHHHHHh
Confidence 47788877542 2222 46899976 5588888877654 3444433 3334433457788899888
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 405 l~~g 408 (453)
T cd07094 405 LEVG 408 (453)
T ss_pred cCcC
Confidence 8654
No 271
>TIGR00597 rad10 DNA repair protein rad10. All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombination repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.00 E-value=76 Score=25.98 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=43.7
Q ss_pred EecCCCCCcchhHHHHHHHhhCC-eeEEEecCCCceEEEEeCCHHHHHHHHhhhcc-ceecCceEEEeCCChHHHHHHHH
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGP-LQNFHLYLNHSLALAKYSTREEAIKAQGNLNN-CILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGp-V~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~-c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.-+.|+|+-=...++.|=..|-. |+=+++ +.++-++++..|+. |...+-|+++-|- -+|+++|++
T Consensus 46 kYH~L~peYi~~Ri~~L~~~~~lrvLL~~V------------Dv~~~~~~L~eL~k~~~~~~~TLilaws-~eEaa~YlE 112 (112)
T TIGR00597 46 RYHNLHPDYIHRRLQSLGKNFNLRILLVQV------------DVKNPQQALKELAKMCILNDCTLILAWS-FEEAARYLE 112 (112)
T ss_pred hhhccCHHHHHHHHHHhccccceeEEEEEE------------eCCchHHHHHHHHHHHHHcCcEEEEECC-HHHHHHhhC
Confidence 33788888767777766544433 333333 33456788999987 8999999888774 567888864
No 272
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=20.96 E-value=76 Score=22.97 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=15.9
Q ss_pred eEEEeCCChHHHHHHHHh
Q psy10308 121 TIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 121 tI~aeFAse~ev~~~~~~ 138 (225)
-++++|+++++.+.|..|
T Consensus 56 ~~~~~F~s~~~l~~Y~~h 73 (97)
T PF07876_consen 56 ALVSTFESEEDLDAYQTH 73 (97)
T ss_dssp EEEEEESSHHHHHHHHTS
T ss_pred EEEEEECCHHHHHHHHcC
Confidence 389999999999999876
No 273
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=20.86 E-value=1.5e+02 Score=26.54 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=37.5
Q ss_pred EEeCCHHHHHHHHhhhccc-eecCceEEEeCCChHHHHHHHHhhccc
Q psy10308 97 AKYSTREEAIKAQGNLNNC-ILGNTTIFAEAPSDAEVQSLLAHLSAT 142 (225)
Q Consensus 97 VrYstkeEA~kAi~aLn~c-~Lg~ttI~aeFAse~ev~~~~~~~~~~ 142 (225)
+.+.+.+++++||++..-. +.|-..|++|..+++++.+|-+...-|
T Consensus 147 ~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~~~e~~~~i~~~~~~P 193 (240)
T cd06556 147 GQYRGDEAGEQLIADALAYAPAGADLIVMECVPVELAKQITEALAIP 193 (240)
T ss_pred eeccCHHHHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhCCCC
Confidence 4567788899999988774 677777999999999999998886544
No 274
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=20.84 E-value=5.7e+02 Score=25.06 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=35.5
Q ss_pred HhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhh-hccceecCceEEEeCCChHHHHHHHHhhccc
Q psy10308 78 VQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGN-LNNCILGNTTIFAEAPSDAEVQSLLAHLSAT 142 (225)
Q Consensus 78 ~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~a-Ln~c~Lg~ttI~aeFAse~ev~~~~~~~~~~ 142 (225)
..||||+. +++|++.|||.+-... ++... .+.+-.+---+.+.+.+|.++....
T Consensus 337 E~fgPVl~----------v~~~~~~dEAI~~an~~i~~~~-~Glta~I~T~d~~~a~~f~~~i~ag 391 (488)
T TIGR02518 337 EKLTTILA----------FYTEENWHEACELSIELLQNEG-AGHTLIIHSENKDIVREFALKKPVS 391 (488)
T ss_pred CccCceEE----------EEEeCCHHHHHHHHHHhhhcCC-CCCeEEEEeCCHHHHHHHHHhCCee
Confidence 55777765 5688999988776554 22222 4445555555678889998887654
No 275
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.74 E-value=3.4e+02 Score=22.73 Aligned_cols=70 Identities=6% Similarity=0.005 Sum_probs=38.6
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
..++|.+-+.-|-....+.| .++|--+.+ +.|-...+++++.+..++. . -..+.+++.++++|.+++
T Consensus 16 k~vlItGas~gIG~~ia~~l-~~~G~~v~~---------~~~~~~~~~~~~~~~~~~~-~--~~~~~~D~~~~~~i~~~~ 82 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVAL-AKAGADIII---------TTHGTNWDETRRLIEKEGR-K--VTFVQVDLTKPESAEKVV 82 (258)
T ss_pred CEEEEeCCCchHHHHHHHHH-HHCCCEEEE---------EeCCcHHHHHHHHHHhcCC-c--eEEEEcCCCCHHHHHHHH
Confidence 36788888877765555554 455532111 1111122334333433221 1 134788999999999888
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
++.
T Consensus 83 ~~~ 85 (258)
T PRK06935 83 KEA 85 (258)
T ss_pred HHH
Confidence 865
No 276
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=20.73 E-value=2.4e+02 Score=25.42 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=47.0
Q ss_pred EecCCCCCcchhHHHHHHHhhCCeeEEEe-cCCCceEEEEeCCH--HHHHHHHh-hhccceecCceE----------EEe
Q psy10308 60 LLKNLTPQIDGSTLKTLCVQHGPLQNFHL-YLNHSLALAKYSTR--EEAIKAQG-NLNNCILGNTTI----------FAE 125 (225)
Q Consensus 60 vL~NLtpQide~tLr~Lc~qhGpV~tfhl-nl~~G~AlVrYstk--eEA~kAi~-aLn~c~Lg~ttI----------~ae 125 (225)
-+.+++||+==+||..|..+.-.+..+|| ....|....+..-. ..++-..+ .+..|.+....| +-+
T Consensus 7 atlG~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll~g~~~~l~~~y~~~~i~~~~~~i~vi~~~~g~~l~D 86 (224)
T PF09623_consen 7 ATLGTSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLLDGGLQRLCQDYYLPKIRFDERHIHVIIDVNGLPLDD 86 (224)
T ss_pred EecCCCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHHHHHHHHHHHhhcCCCccccccccEEEecCCCccccc
Confidence 44899999999999999998888988885 33333222111111 00000000 001355544444 558
Q ss_pred CCChHHHHHHHHhh
Q psy10308 126 APSDAEVQSLLAHL 139 (225)
Q Consensus 126 FAse~ev~~~~~~~ 139 (225)
|.+|+|...|.+..
T Consensus 87 I~t~~d~~~~~~~I 100 (224)
T PF09623_consen 87 IRTEEDNEAFADFI 100 (224)
T ss_pred cCCHHHHHHHHHHH
Confidence 89999987776544
No 277
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=20.65 E-value=1.4e+02 Score=22.00 Aligned_cols=54 Identities=6% Similarity=-0.098 Sum_probs=37.5
Q ss_pred cchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEE
Q psy10308 68 IDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFA 124 (225)
Q Consensus 68 ide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~a 124 (225)
++.++++.....|.-..=. .-..|| +|-|.+.+||++-..+.|+..+.+-+|..
T Consensus 12 ~~v~d~K~~Lr~y~~~~I~--~d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 12 VTVEDFKKRLRKYRWDRIR--DDRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ccHHHHHHHHhcCCcceEE--ecCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4566777777766643221 123566 67788888999999999998877766554
No 278
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=20.56 E-value=2.8e+02 Score=27.12 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=38.3
Q ss_pred EEecCCCCCcchhHHHHHHH-hhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCV-QHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~-qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
-+|.++++... -+.. -||||+. +++|++.|||.+-+.. .. .+-+..+---+.+.+.+|++
T Consensus 326 tvl~~v~~~~~-----i~~eEiFGPVl~----------v~~~~~~deAi~~~n~---~~-~gLa~~vft~d~~~~~~~~~ 386 (493)
T PTZ00381 326 TIIVNPDLDSP-----LMQEEIFGPILP----------ILTYENIDEVLEFINS---RP-KPLALYYFGEDKRHKELVLE 386 (493)
T ss_pred EEEecCCCCCh-----HHhccccCCeEE----------EEeeCCHHHHHHHHhc---CC-CCceEEEECCCHHHHHHHHH
Confidence 36677776532 2223 3899987 4678898887765553 22 22233333334566778888
Q ss_pred hhccc
Q psy10308 138 HLSAT 142 (225)
Q Consensus 138 ~~~~~ 142 (225)
++..+
T Consensus 387 ~~~sG 391 (493)
T PTZ00381 387 NTSSG 391 (493)
T ss_pred hCCcc
Confidence 87543
No 279
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=20.53 E-value=2.9e+02 Score=26.03 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=40.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
-+|.++++.+. .++ -.-||||+. +++|++.|||.+-+ |.+.. +-+..+---+.+.+.+|.++
T Consensus 342 til~~~~~~~~--~~~--~E~FgPvl~----------v~~~~~~~eai~~~---n~~~~-gL~~~i~t~d~~~~~~~~~~ 403 (453)
T cd07099 342 TVLTDVPHDMD--VMR--EETFGPVLP----------VMPVADEDEAIALA---NDSRY-GLSASVFSRDLARAEAIARR 403 (453)
T ss_pred EEEecCCCCCH--HHh--CCCcCCeeE----------EEeeCCHHHHHHHH---hCCCC-CCeEEEEcCCHHHHHHHHHh
Confidence 47788877532 222 256899987 45788888766555 44433 33444444457778888888
Q ss_pred hcc
Q psy10308 139 LSA 141 (225)
Q Consensus 139 ~~~ 141 (225)
+..
T Consensus 404 l~~ 406 (453)
T cd07099 404 LEA 406 (453)
T ss_pred CCe
Confidence 854
No 280
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=20.40 E-value=1e+02 Score=27.46 Aligned_cols=36 Identities=11% Similarity=0.087 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHhhhccceecCceEEEeCCC-hHHH
Q psy10308 95 ALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS-DAEV 132 (225)
Q Consensus 95 AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs-e~ev 132 (225)
|||.|++.++|+.|.+.+..-. ...+.++.|. .+||
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccc
Confidence 7999999999999999654322 2345776665 4555
No 281
>cd07122 ALDH_F20_ACDH Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.
Probab=20.38 E-value=3.9e+02 Score=25.84 Aligned_cols=66 Identities=11% Similarity=0.146 Sum_probs=41.2
Q ss_pred ecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeCCChHHHHHHHHhh
Q psy10308 61 LKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 61 L~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeFAse~ev~~~~~~~ 139 (225)
+.++++++. -.+ ..||||+. +++|++.|||.+-.... + +.=.+-+..|---+.+.+.+|.+++
T Consensus 316 ~~~v~~~~~--~~~---E~FGPVl~----------v~~~~~~~eAi~~aN~~~~-~~~~GLsa~V~T~d~~~a~~~~~~l 379 (436)
T cd07122 316 ETGVGPEEP--LSR---EKLSPVLA----------FYRAEDFEEALEKARELLE-YGGAGHTAVIHSNDEEVIEEFALRM 379 (436)
T ss_pred cCCCCCCCc--chh---cccCCeEE----------EEEeCCHHHHHHHHHHHHh-ccCCCceEEEEcCCHHHHHHHHhhC
Confidence 456666543 223 35899987 56899988876544332 1 0113445556666788888998888
Q ss_pred ccc
Q psy10308 140 SAT 142 (225)
Q Consensus 140 ~~~ 142 (225)
..+
T Consensus 380 ~aG 382 (436)
T cd07122 380 PVS 382 (436)
T ss_pred Cce
Confidence 654
No 282
>KOG0684|consensus
Probab=20.35 E-value=91 Score=31.44 Aligned_cols=67 Identities=13% Similarity=0.135 Sum_probs=41.4
Q ss_pred hhHHHHHHHhhCCeeEEEe---c----CC-CceEEEEeCC--HHHHHHHHhhhccceecCceEE--EeCCChHHHHHHHH
Q psy10308 70 GSTLKTLCVQHGPLQNFHL---Y----LN-HSLALAKYST--REEAIKAQGNLNNCILGNTTIF--AEAPSDAEVQSLLA 137 (225)
Q Consensus 70 e~tLr~Lc~qhGpV~tfhl---n----l~-~G~AlVrYst--keEA~kAi~aLn~c~Lg~ttI~--aeFAse~ev~~~~~ 137 (225)
-+=||++..|||+|+||.+ + ++ +|+++|--+. +=++++|-..|.--+++ ..|. +.-..-.|.-+|+.
T Consensus 54 ~eFl~~~~~K~GdVFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~vFg-~~v~~d~~~~~~~e~~~~~k 132 (486)
T KOG0684|consen 54 LEFLRECRKKYGDVFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPVFG-KGVVYDVPNHVMMEQKKFFK 132 (486)
T ss_pred HHHHHHHHHhcCCeEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhhcC-CCccccCCCchHHHHHHHHH
Confidence 3678999999999999998 1 11 6666665554 55577777777644443 3333 34444444444443
No 283
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=20.34 E-value=2.6e+02 Score=26.87 Aligned_cols=66 Identities=14% Similarity=0.245 Sum_probs=42.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.+. -+++ ..||||+. +++|++.+|| ++.+|....+ -+..|---+.+.+.+|.++
T Consensus 359 Tvl~~v~~~~~--i~~e--E~FGPvl~----------v~~~~~~~ea---i~~aN~~~~g-L~a~v~t~d~~~~~~~~~~ 420 (472)
T TIGR03250 359 TVLDRVDPSMT--LVRE--ETFGPVSP----------VIRFCDIDDA---IRISNSTAYG-LSSGVCTNRLDYITRFIAE 420 (472)
T ss_pred EEEeCCCCCCh--HHhC--CCcCCeEE----------EEEeCCHHHH---HHHHhCCCcc-ceEEEEcCCHHHHHHHHHH
Confidence 57888887643 1111 56899987 4588888875 5555665543 3333434467788899988
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+...
T Consensus 421 l~~G 424 (472)
T TIGR03250 421 LQVG 424 (472)
T ss_pred CCcc
Confidence 8543
No 284
>cd07137 ALDH_F3FHI Plant aldehyde dehydrogenase family 3 members F1, H1, and I1 and related proteins. Aldehyde dehydrogenase family members 3F1, 3H1, and 3I1 (ALDH3F1, ALDH3H1, and ALDH3I1), and similar plant sequences, are in this CD. In Arabidopsis thaliana, stress-regulated expression of ALDH3I1 was observed in leaves and osmotic stress expression of ALDH3H1 was observed in root tissue, whereas, ALDH3F1 expression was not stress responsive. Functional analysis of ALDH3I1 suggest it may be involved in a detoxification pathway in plants that limits aldehyde accumulation and oxidative stress.
Probab=20.32 E-value=3e+02 Score=26.26 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=43.0
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
-.+|.+++++.. .+++ .-||||+. +++|++.|||.+ .+|.+.. +-+-.|--.+.+.+.+|++
T Consensus 320 Ptvl~~~~~~~~--~~~e--E~FgPvl~----------v~~~~~~deai~---~~N~~~~-gL~a~v~t~d~~~a~~~~~ 381 (432)
T cd07137 320 PTILLDPPLDSS--IMTE--EIFGPLLP----------IITVKKIEESIE---IINSRPK-PLAAYVFTKNKELKRRIVA 381 (432)
T ss_pred eEEEecCCCcch--hhhc--ccccCceE----------EEEeCCHHHHHH---HHhcCCC-CcEEEEECCCHHHHHHHHH
Confidence 357778776542 2222 46899987 457888887654 4455554 3444444567888899999
Q ss_pred hhccc
Q psy10308 138 HLSAT 142 (225)
Q Consensus 138 ~~~~~ 142 (225)
++...
T Consensus 382 ~l~~G 386 (432)
T cd07137 382 ETSSG 386 (432)
T ss_pred hCCcC
Confidence 87653
No 285
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.29 E-value=2.1e+02 Score=28.54 Aligned_cols=83 Identities=20% Similarity=0.328 Sum_probs=51.3
Q ss_pred ceEEecCCCCC-cchhHHHHHHHhhCCe-eEEEecCCCce-----EEEEeCCHHHHHHHHhhhccc---eecCceEEEeC
Q psy10308 57 TWVLLKNLTPQ-IDGSTLKTLCVQHGPL-QNFHLYLNHSL-----ALAKYSTREEAIKAQGNLNNC---ILGNTTIFAEA 126 (225)
Q Consensus 57 ~wLvL~NLtpQ-ide~tLr~Lc~qhGpV-~tfhlnl~~G~-----AlVrYstkeEA~kAi~aLn~c---~Lg~ttI~aeF 126 (225)
.||.+.-++|. +++ +|-+++.+.|.| ..+||.+..|. .+=|--+.++..++++.|... ....+.|++=|
T Consensus 295 ~~ir~~s~~P~~i~d-eli~~m~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p~i~i~tdiIvGf 373 (509)
T PRK14327 295 PRVRFTTSHPRDFDD-HLIEVLAKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIPNVALTTDIIVGF 373 (509)
T ss_pred ceEEEeecCcccCCH-HHHHHHHhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCcEEeeeEEEeC
Confidence 35656555553 554 555677789986 58898655442 233445678888888777542 22356689999
Q ss_pred CCh--HHHH---HHHHhhc
Q psy10308 127 PSD--AEVQ---SLLAHLS 140 (225)
Q Consensus 127 Ase--~ev~---~~~~~~~ 140 (225)
+.| +|++ +|+..+.
T Consensus 374 PgET~edf~~Tl~~v~~l~ 392 (509)
T PRK14327 374 PNETDEQFEETLSLYREVG 392 (509)
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 884 4553 4555543
No 286
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=20.25 E-value=3.1e+02 Score=26.07 Aligned_cols=64 Identities=22% Similarity=0.221 Sum_probs=39.3
Q ss_pred EEecCCCCCcchhHHHHHHH-hhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCV-QHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~-qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.+|.++++.. +-++. .||||+.+ ++|++.|||.+-+ |.+. .+-+..+---+.+.+.+|++
T Consensus 352 tvl~~~~~~~-----~~~~~E~fgPvl~v----------~~~~~~~eai~~~---n~~~-~gLsa~i~t~d~~~~~~~~~ 412 (465)
T cd07098 352 TLLVDVTPDM-----KIAQEEVFGPVMVV----------MKASDDEEAVEIA---NSTE-YGLGASVFGKDIKRARRIAS 412 (465)
T ss_pred EEEeCCCCCC-----HHHhCCCcCCeEEE----------EEeCCHHHHHHHH---hCCC-CCceEEEEcCCHHHHHHHHH
Confidence 4677877642 22223 48999874 6888888776544 4443 23344443344667888988
Q ss_pred hhcc
Q psy10308 138 HLSA 141 (225)
Q Consensus 138 ~~~~ 141 (225)
++..
T Consensus 413 ~l~~ 416 (465)
T cd07098 413 QLET 416 (465)
T ss_pred hCCc
Confidence 8754
No 287
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=20.05 E-value=2.4e+02 Score=24.01 Aligned_cols=46 Identities=7% Similarity=0.081 Sum_probs=28.4
Q ss_pred cchhHHHHHHHhhCCeeEEEec--------CCCceEEEEeCCHHHHHHHHhhhc
Q psy10308 68 IDGSTLKTLCVQHGPLQNFHLY--------LNHSLALAKYSTREEAIKAQGNLN 113 (225)
Q Consensus 68 ide~tLr~Lc~qhGpV~tfhln--------l~~G~AlVrYstkeEA~kAi~aLn 113 (225)
.+.+-++.++.+||..+-.+|. ..+|..++.|..+..|.+++..|-
T Consensus 189 ~~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~~~aa~~~~~La 242 (270)
T cd02040 189 REDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVIEYDPESKQADEYRELA 242 (270)
T ss_pred hHHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceEEecCCCHHHHHHHHHH
Confidence 3445677788888864333442 226777777777666666666653
No 288
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=20.02 E-value=3e+02 Score=26.74 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=43.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.+. -+++ ..||||+. +++|++.|||. +.+|.+.++- +..|---+.+.+.++.++
T Consensus 371 tvl~~v~~~~~--i~~e--E~FGPVl~----------v~~~~~~~eai---~~aN~s~~GL-~a~Vft~d~~~a~~~~~~ 432 (482)
T PRK11241 371 TILVDVPANAK--VAKE--ETFGPLAP----------LFRFKDEADVI---AQANDTEFGL-AAYFYARDLSRVFRVGEA 432 (482)
T ss_pred EEEECCCCCCh--hhhC--cCcCCEEE----------EEEeCCHHHHH---HHhhCCCCCc-eEEEEcCCHHHHHHHHHH
Confidence 47788887643 1111 46899986 56899987754 4556666653 445545567778999888
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 433 l~~G 436 (482)
T PRK11241 433 LEYG 436 (482)
T ss_pred cCcc
Confidence 8654
No 289
>PLN02203 aldehyde dehydrogenase
Probab=20.01 E-value=2.6e+02 Score=27.44 Aligned_cols=66 Identities=18% Similarity=0.176 Sum_probs=41.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.++. +++ .-||||+. +++|++.+|| |+.+|.+.. +-+..|---+.+.+.+|.++
T Consensus 331 Tvl~~v~~d~~i--~~e--E~FGPVl~----------v~~~~~~~ea---i~~aN~~~~-gL~a~vft~d~~~a~~~~~~ 392 (484)
T PLN02203 331 TILLNPPLDSDI--MTE--EIFGPLLP----------IITVKKIEDS---IAFINSKPK-PLAIYAFTNNEKLKRRILSE 392 (484)
T ss_pred EEEecCCCCCHH--Hhc--CccCCeEE----------EEeeCCHHHH---HHHHhCCCC-CceEEEEcCCHHHHHHHHHh
Confidence 577888765431 222 56899986 5578887765 455566544 23344444556778899998
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 393 l~~G 396 (484)
T PLN02203 393 TSSG 396 (484)
T ss_pred CCcc
Confidence 7654
Done!