Query psy10308
Match_columns 225
No_of_seqs 98 out of 122
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 23:12:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10308.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10308hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wbr_A GW182, gawky, LD47780P; 100.0 1.7E-34 5.8E-39 221.2 11.4 86 53-138 4-89 (89)
2 4fxv_A ELAV-like protein 1; RN 99.7 2.5E-18 8.7E-23 128.2 8.4 73 57-129 20-98 (99)
3 2cpj_A Non-POU domain-containi 99.7 5.8E-18 2E-22 123.7 8.9 75 55-129 14-88 (99)
4 3s8s_A Histone-lysine N-methyl 99.7 4.2E-17 1.4E-21 124.2 11.0 86 56-141 6-98 (110)
5 4f25_A Polyadenylate-binding p 99.7 1.8E-17 6.1E-22 125.5 8.7 74 56-129 5-82 (115)
6 2cqc_A Arginine/serine-rich sp 99.7 7.6E-17 2.6E-21 115.7 10.9 75 55-129 14-94 (95)
7 2e5h_A Zinc finger CCHC-type a 99.7 7.3E-17 2.5E-21 115.9 10.5 74 55-128 15-94 (94)
8 1why_A Hypothetical protein ri 99.7 8.4E-17 2.9E-21 117.1 10.9 75 55-129 16-92 (97)
9 2dgx_A KIAA0430 protein; RRM d 99.7 1.1E-16 3.6E-21 117.2 10.5 74 56-129 9-89 (96)
10 3lqv_A PRE-mRNA branch site pr 99.7 1.3E-16 4.4E-21 119.0 11.0 86 56-141 8-109 (115)
11 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.9E-16 6.4E-21 116.1 11.5 75 55-129 14-92 (103)
12 2cq3_A RNA-binding protein 9; 99.7 1.5E-16 5.1E-21 116.6 10.8 75 55-129 14-92 (103)
13 2ytc_A PRE-mRNA-splicing facto 99.7 1.1E-16 3.6E-21 113.2 9.5 73 56-128 12-85 (85)
14 2lxi_A RNA-binding protein 10; 99.7 4.5E-17 1.5E-21 119.3 7.7 73 57-129 2-82 (91)
15 1whx_A Hypothetical protein ri 99.7 4.1E-17 1.4E-21 123.4 7.7 76 55-130 9-84 (111)
16 2la4_A Nuclear and cytoplasmic 99.7 4.2E-17 1.4E-21 119.2 7.5 74 56-129 27-100 (101)
17 3md1_A Nuclear and cytoplasmic 99.7 4.7E-17 1.6E-21 114.3 7.4 73 57-129 2-80 (83)
18 1x4c_A Splicing factor, argini 99.7 1.8E-16 6.1E-21 118.2 10.9 74 55-129 14-92 (108)
19 3mdf_A Peptidyl-prolyl CIS-tra 99.7 8.4E-17 2.9E-21 113.4 8.6 74 55-128 6-85 (85)
20 2ywk_A Putative RNA-binding pr 99.7 7.4E-17 2.5E-21 116.1 8.5 75 55-129 15-94 (95)
21 1x4g_A Nucleolysin TIAR; struc 99.7 1E-16 3.5E-21 119.1 9.3 75 56-130 25-99 (109)
22 2cph_A RNA binding motif prote 99.7 1.8E-16 6E-21 116.3 10.4 76 55-130 14-97 (107)
23 2dnz_A Probable RNA-binding pr 99.7 9.9E-17 3.4E-21 115.4 8.9 74 56-129 5-84 (95)
24 1wex_A Hypothetical protein (r 99.7 1.2E-16 4.1E-21 121.5 9.8 77 56-132 15-93 (104)
25 1x4a_A Splicing factor, argini 99.7 1.2E-16 4E-21 118.6 9.4 75 55-129 21-98 (109)
26 2lkz_A RNA-binding protein 5; 99.7 4.7E-17 1.6E-21 122.0 7.1 76 54-129 7-94 (95)
27 1sjq_A Polypyrimidine tract-bi 99.7 9E-17 3.1E-21 124.5 9.0 78 55-132 15-94 (105)
28 1whw_A Hypothetical protein ri 99.7 1.9E-16 6.3E-21 115.1 10.0 76 55-130 7-88 (99)
29 1x5p_A Negative elongation fac 99.7 2.8E-16 9.6E-21 114.6 11.0 73 55-129 14-86 (97)
30 2dgu_A Heterogeneous nuclear r 99.7 2.1E-16 7.3E-21 116.4 10.3 73 56-130 11-83 (103)
31 2dnq_A RNA-binding protein 4B; 99.7 2E-16 6.7E-21 113.8 9.8 73 55-129 7-79 (90)
32 2dnh_A Bruno-like 5, RNA bindi 99.7 1.9E-16 6.5E-21 116.1 9.9 75 56-130 15-97 (105)
33 1x5s_A Cold-inducible RNA-bind 99.7 1.2E-16 4.1E-21 116.7 8.8 75 55-129 11-91 (102)
34 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.1E-16 3.8E-21 113.2 8.2 74 56-129 6-85 (87)
35 2dgo_A Cytotoxic granule-assoc 99.7 2.4E-16 8.3E-21 117.6 10.5 75 55-129 14-94 (115)
36 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.3E-16 4.5E-21 116.4 8.9 74 56-129 12-91 (102)
37 2x1f_A MRNA 3'-END-processing 99.7 1.6E-16 5.4E-21 115.5 9.0 76 57-132 3-84 (96)
38 2cpf_A RNA binding motif prote 99.7 1.4E-16 4.7E-21 115.6 8.6 75 56-130 5-88 (98)
39 1x5u_A Splicing factor 3B subu 99.7 3.7E-16 1.3E-20 114.6 10.6 76 55-130 14-95 (105)
40 2dgv_A HnRNP M, heterogeneous 99.7 1.3E-16 4.6E-21 114.1 7.9 75 55-129 7-85 (92)
41 1p1t_A Cleavage stimulation fa 99.7 1.6E-16 5.3E-21 116.1 8.4 84 56-139 8-97 (104)
42 1x5t_A Splicing factor 3B subu 99.7 1.5E-16 5.1E-21 114.7 8.2 74 56-129 5-85 (96)
43 3r27_A HnRNP L, heterogeneous 99.7 8.3E-17 2.8E-21 123.9 7.0 76 56-131 21-98 (100)
44 2dnm_A SRP46 splicing factor; 99.7 1E-16 3.4E-21 117.6 7.1 75 55-129 12-92 (103)
45 2do0_A HnRNP M, heterogeneous 99.7 3.4E-16 1.2E-20 116.3 10.0 75 55-129 14-93 (114)
46 2ek1_A RNA-binding protein 12; 99.7 6.6E-17 2.3E-21 116.4 5.9 75 55-129 14-94 (95)
47 2do4_A Squamous cell carcinoma 99.7 2.1E-16 7.1E-21 115.3 8.5 74 56-129 17-95 (100)
48 2hvz_A Splicing factor, argini 99.7 1.4E-16 4.8E-21 116.4 7.6 73 58-130 2-75 (101)
49 2cq1_A PTB-like protein L; RRM 99.7 3.4E-16 1.2E-20 118.7 9.8 78 55-132 14-93 (101)
50 2db1_A Heterogeneous nuclear r 99.7 2.2E-16 7.5E-21 120.5 8.8 86 56-142 17-110 (118)
51 3ulh_A THO complex subunit 4; 99.7 2.1E-16 7E-21 116.3 8.3 74 55-128 28-106 (107)
52 4a8x_A RNA-binding protein wit 99.7 2.1E-16 7.2E-21 111.7 8.0 73 57-129 5-84 (88)
53 2cpz_A CUG triplet repeat RNA- 99.7 9.3E-16 3.2E-20 114.7 11.7 76 55-130 24-105 (115)
54 1x4d_A Matrin 3; structural ge 99.7 2E-16 6.8E-21 121.0 8.2 75 55-129 14-91 (102)
55 2div_A TRNA selenocysteine ass 99.7 3.8E-16 1.3E-20 113.4 9.2 75 55-129 8-93 (99)
56 3ns6_A Eukaryotic translation 99.7 2.2E-16 7.7E-21 116.8 7.8 75 55-129 5-92 (100)
57 2cq0_A Eukaryotic translation 99.7 3.3E-16 1.1E-20 114.8 8.5 75 55-129 14-94 (103)
58 2cqd_A RNA-binding region cont 99.7 9.4E-16 3.2E-20 114.8 11.2 75 55-130 16-96 (116)
59 2dnp_A RNA-binding protein 14; 99.7 6.4E-16 2.2E-20 111.1 9.9 73 55-129 8-80 (90)
60 1x4h_A RNA-binding protein 28; 99.7 9.9E-16 3.4E-20 113.0 11.1 75 55-129 14-100 (111)
61 2d9p_A Polyadenylate-binding p 99.7 3.7E-16 1.3E-20 114.5 8.7 75 55-129 14-92 (103)
62 2cqp_A RNA-binding protein 12; 99.6 2.1E-16 7.1E-21 114.6 7.1 75 55-129 14-94 (98)
63 1p27_B RNA-binding protein 8A; 99.6 3.4E-16 1.2E-20 114.9 8.4 74 56-129 23-102 (106)
64 2dgp_A Bruno-like 4, RNA bindi 99.6 3.5E-16 1.2E-20 114.9 8.3 75 55-129 12-95 (106)
65 2dgt_A RNA-binding protein 30; 99.6 4.6E-16 1.6E-20 112.2 8.8 73 55-129 9-81 (92)
66 2la6_A RNA-binding protein FUS 99.6 3.2E-16 1.1E-20 114.4 7.9 74 55-128 12-99 (99)
67 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 1.2E-15 4.2E-20 116.0 11.3 73 55-127 62-140 (140)
68 2cqh_A IGF-II mRNA-binding pro 99.6 2.4E-16 8.3E-21 113.6 6.9 74 55-129 7-82 (93)
69 1wf1_A RNA-binding protein RAL 99.6 3E-16 1E-20 116.8 7.5 73 55-129 26-99 (110)
70 3p5t_L Cleavage and polyadenyl 99.6 2.2E-16 7.5E-21 114.1 6.4 73 58-130 3-83 (90)
71 1wg1_A KIAA1579 protein, homol 99.6 2.3E-16 7.8E-21 113.5 6.4 75 55-130 4-78 (88)
72 2cpi_A CCR4-NOT transcription 99.6 5.5E-16 1.9E-20 116.4 8.7 76 55-130 14-101 (111)
73 2cpy_A RNA-binding protein 12; 99.6 1.7E-15 5.8E-20 114.2 11.4 82 56-138 15-102 (114)
74 2dgs_A DAZ-associated protein 99.6 1E-15 3.5E-20 111.4 9.9 74 55-129 9-88 (99)
75 2e44_A Insulin-like growth fac 99.6 8E-16 2.7E-20 111.1 9.1 77 56-132 15-94 (96)
76 2e5j_A Methenyltetrahydrofolat 99.6 1.7E-15 5.8E-20 110.5 10.8 75 55-129 18-93 (97)
77 2xnq_A Nuclear polyadenylated 99.6 1E-15 3.6E-20 112.9 9.8 73 55-129 21-94 (97)
78 2mss_A Protein (musashi1); RNA 99.6 5.2E-16 1.8E-20 107.6 7.7 68 59-127 2-75 (75)
79 2ad9_A Polypyrimidine tract-bi 99.6 1.8E-16 6.2E-21 124.9 6.0 78 56-133 31-110 (119)
80 2err_A Ataxin-2-binding protei 99.6 3.8E-16 1.3E-20 117.2 7.5 74 56-129 29-106 (109)
81 2khc_A Testis-specific RNP-typ 99.6 2.4E-16 8.1E-21 118.1 6.3 74 55-128 39-118 (118)
82 3ex7_B RNA-binding protein 8A; 99.6 6.2E-16 2.1E-20 117.0 8.6 75 55-129 21-101 (126)
83 1u6f_A Tcubp1, RNA-binding pro 99.6 5.1E-16 1.7E-20 119.3 8.2 76 55-130 41-122 (139)
84 2jvo_A Nucleolar protein 3; nu 99.6 6.4E-16 2.2E-20 116.5 8.5 73 55-129 30-102 (108)
85 2hgl_A HNRPF protein, heteroge 99.6 3.8E-16 1.3E-20 124.4 7.6 84 56-140 44-135 (136)
86 3ucg_A Polyadenylate-binding p 99.6 9.1E-16 3.1E-20 108.9 8.6 73 56-129 6-84 (89)
87 1nu4_A U1A RNA binding domain; 99.6 7.2E-16 2.5E-20 111.3 8.1 74 56-129 8-88 (97)
88 2cpe_A RNA-binding protein EWS 99.6 1.7E-15 5.7E-20 112.7 10.3 75 55-129 14-102 (113)
89 2cpd_A Apobec-1 stimulating pr 99.6 3E-15 1E-19 109.2 11.5 73 55-129 14-88 (99)
90 2lmi_A GRSF-1, G-rich sequence 99.6 4.1E-16 1.4E-20 116.4 7.0 85 56-141 11-103 (107)
91 2dis_A Unnamed protein product 99.6 9.4E-16 3.2E-20 113.1 8.6 75 56-130 8-92 (109)
92 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4E-20 113.0 9.0 75 55-129 25-105 (110)
93 2fy1_A RNA-binding motif prote 99.6 8.5E-16 2.9E-20 116.9 8.4 74 56-129 7-85 (116)
94 3n9u_C Cleavage and polyadenyl 99.6 1.6E-15 5.3E-20 122.2 10.4 83 56-138 55-145 (156)
95 1wi8_A EIF-4B, eukaryotic tran 99.6 1.9E-15 6.4E-20 111.2 9.9 73 55-129 14-93 (104)
96 2cq4_A RNA binding motif prote 99.6 5.2E-16 1.8E-20 115.9 7.0 76 55-131 24-105 (114)
97 2kt5_A RNA and export factor-b 99.6 4.6E-15 1.6E-19 112.4 12.4 75 55-129 34-113 (124)
98 2i2y_A Fusion protein consists 99.6 8.9E-16 3E-20 119.9 8.6 75 55-129 72-147 (150)
99 2cq2_A Hypothetical protein LO 99.6 5.2E-16 1.8E-20 121.9 7.3 74 56-129 25-105 (114)
100 2nlw_A Eukaryotic translation 99.6 6.2E-16 2.1E-20 115.1 7.2 76 55-130 14-100 (105)
101 2jrs_A RNA-binding protein 39; 99.6 9.9E-16 3.4E-20 115.3 8.1 75 55-129 25-105 (108)
102 2jvr_A Nucleolar protein 3; RN 99.6 1.4E-15 4.7E-20 117.5 8.9 74 56-129 28-104 (111)
103 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.1E-15 3.9E-20 120.0 8.3 75 55-129 38-118 (156)
104 2dhg_A TRNA selenocysteine ass 99.6 9E-16 3.1E-20 112.3 7.1 75 56-130 9-90 (104)
105 2e5i_A Heterogeneous nuclear r 99.6 1.7E-15 5.9E-20 119.9 9.2 76 56-131 25-103 (124)
106 2kvi_A Nuclear polyadenylated 99.6 9.5E-16 3.2E-20 111.9 7.1 73 55-129 9-82 (96)
107 2kxn_B Transformer-2 protein h 99.6 1E-15 3.5E-20 119.2 7.6 74 56-129 46-125 (129)
108 1uaw_A Mouse-musashi-1; RNP-ty 99.6 8.4E-16 2.9E-20 106.4 6.3 69 58-127 2-76 (77)
109 2kn4_A Immunoglobulin G-bindin 99.6 1.4E-15 4.7E-20 118.8 8.3 75 55-129 69-149 (158)
110 2fc9_A NCL protein; structure 99.6 1.5E-15 5.1E-20 110.9 7.9 75 55-129 14-90 (101)
111 1wel_A RNA-binding protein 12; 99.6 4.8E-16 1.6E-20 118.5 5.4 83 56-139 25-113 (124)
112 2hzc_A Splicing factor U2AF 65 99.6 6.1E-15 2.1E-19 104.2 10.4 71 55-126 5-86 (87)
113 1x4f_A Matrin 3; structural ge 99.6 4.7E-16 1.6E-20 121.4 5.1 75 55-129 24-101 (112)
114 2ki2_A SS-DNA binding protein 99.6 5.6E-16 1.9E-20 110.8 5.0 74 57-131 2-81 (90)
115 2dng_A Eukaryotic translation 99.6 4.2E-15 1.4E-19 109.1 9.6 73 55-129 14-92 (103)
116 3zzy_A Polypyrimidine tract-bi 99.6 1.3E-15 4.4E-20 122.3 7.3 76 56-131 28-107 (130)
117 1fxl_A Paraneoplastic encephal 99.6 7.1E-15 2.4E-19 111.9 11.0 84 57-140 3-113 (167)
118 2cpx_A Hypothetical protein FL 99.6 1.3E-15 4.6E-20 113.2 6.8 74 56-129 25-104 (115)
119 2a3j_A U1 small nuclear ribonu 99.6 2.8E-15 9.6E-20 117.9 8.8 77 56-132 29-113 (127)
120 3beg_B Splicing factor, argini 99.6 2.7E-15 9.4E-20 113.7 8.2 74 55-129 15-93 (115)
121 1x4b_A Heterogeneous nuclear r 99.6 3.4E-15 1.2E-19 111.8 8.6 73 56-129 27-105 (116)
122 2jwn_A Embryonic polyadenylate 99.6 1.9E-15 6.4E-20 114.1 7.1 73 56-129 36-114 (124)
123 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-15 6.4E-20 118.6 7.4 84 56-140 23-115 (123)
124 1iqt_A AUF1, heterogeneous nuc 99.6 2E-15 6.8E-20 104.3 6.7 68 59-127 2-75 (75)
125 3q2s_C Cleavage and polyadenyl 99.6 2.6E-15 9E-20 127.3 8.8 83 56-138 68-158 (229)
126 1sjr_A Polypyrimidine tract-bi 99.6 1.9E-15 6.4E-20 125.8 7.7 76 56-131 46-125 (164)
127 1x4e_A RNA binding motif, sing 99.6 8.2E-16 2.8E-20 108.9 4.6 74 55-128 4-83 (85)
128 2dh8_A DAZ-associated protein 99.6 1.6E-15 5.6E-20 111.4 6.4 75 55-130 15-95 (105)
129 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3.5E-15 1.2E-19 118.9 8.8 74 56-129 72-151 (165)
130 3pgw_A U1-A; protein-RNA compl 99.6 1.5E-14 5.1E-19 121.3 12.9 73 56-128 207-281 (282)
131 2krb_A Eukaryotic translation 99.6 3E-15 1E-19 105.9 7.1 68 57-124 2-80 (81)
132 2g4b_A Splicing factor U2AF 65 99.6 3.1E-15 1.1E-19 115.4 7.8 73 56-128 94-172 (172)
133 1wg5_A Heterogeneous nuclear r 99.6 1.1E-15 3.8E-20 113.5 4.9 78 56-134 15-98 (104)
134 3md3_A Nuclear and cytoplasmic 99.6 4.5E-15 1.5E-19 112.9 8.4 75 55-129 86-166 (166)
135 3s7r_A Heterogeneous nuclear r 99.6 5.2E-15 1.8E-19 105.1 8.0 72 55-127 10-87 (87)
136 4f02_A Polyadenylate-binding p 99.6 4.3E-15 1.5E-19 121.7 8.6 75 56-130 103-181 (213)
137 1fjc_A Nucleolin RBD2, protein 99.6 1.7E-15 5.7E-20 109.5 5.5 75 55-129 15-90 (96)
138 3md3_A Nuclear and cytoplasmic 99.6 6.6E-15 2.3E-19 112.0 9.1 70 58-127 2-76 (166)
139 2e5g_A U6 snRNA-specific termi 99.6 7E-15 2.4E-19 106.6 8.7 75 55-130 7-82 (94)
140 1x5o_A RNA binding motif, sing 99.6 3.6E-15 1.2E-19 111.0 7.1 75 55-129 24-111 (114)
141 2lea_A Serine/arginine-rich sp 99.6 3.2E-15 1.1E-19 116.9 7.2 75 55-129 46-126 (135)
142 2cqg_A TDP-43, TAR DNA-binding 99.6 7E-15 2.4E-19 107.7 8.5 73 56-130 15-93 (103)
143 1s79_A Lupus LA protein; RRM, 99.6 4E-15 1.4E-19 112.3 7.1 75 55-130 10-89 (103)
144 2pe8_A Splicing factor 45; RRM 99.6 9.9E-15 3.4E-19 111.1 8.8 76 56-131 8-95 (105)
145 2rs2_A Musashi-1, RNA-binding 99.6 1.1E-14 3.7E-19 109.5 8.8 73 56-129 25-103 (109)
146 2dgw_A Probable RNA-binding pr 99.6 6.3E-15 2.1E-19 105.8 7.1 72 56-129 10-86 (91)
147 2bz2_A Negative elongation fac 99.6 6.7E-15 2.3E-19 113.6 7.5 74 55-130 38-111 (121)
148 3tyt_A Heterogeneous nuclear r 99.6 1E-14 3.6E-19 121.1 9.2 75 56-130 4-80 (205)
149 2dit_A HIV TAT specific factor 99.5 2.4E-14 8.3E-19 107.8 10.0 75 55-129 14-101 (112)
150 2qfj_A FBP-interacting repress 99.5 8.7E-15 3E-19 116.7 8.0 73 57-129 126-204 (216)
151 2f3j_A RNA and export factor b 99.5 8.7E-15 3E-19 119.8 8.2 76 55-130 87-167 (177)
152 2qfj_A FBP-interacting repress 99.5 2.6E-14 8.8E-19 114.0 10.6 73 56-128 28-106 (216)
153 3v4m_A Splicing factor U2AF 65 99.5 1.6E-14 5.6E-19 109.7 8.9 77 56-132 5-99 (105)
154 2j76_E EIF-4B, EIF4B, eukaryot 99.5 4.2E-15 1.4E-19 109.4 5.5 72 56-129 19-97 (100)
155 3nmr_A Cugbp ELAV-like family 99.5 1.3E-14 4.5E-19 111.6 8.4 74 55-128 94-175 (175)
156 3sde_A Paraspeckle component 1 99.5 2.4E-14 8.1E-19 120.9 10.5 88 55-142 21-123 (261)
157 2m2b_A RNA-binding protein 10; 99.5 3.5E-15 1.2E-19 114.9 5.0 74 55-129 22-107 (131)
158 2g4b_A Splicing factor U2AF 65 99.5 6E-14 2.1E-18 108.2 11.7 84 56-140 4-119 (172)
159 2yh0_A Splicing factor U2AF 65 99.5 4.4E-14 1.5E-18 111.2 11.2 74 55-129 3-87 (198)
160 1b7f_A Protein (SXL-lethal pro 99.5 1.9E-14 6.5E-19 110.3 8.8 73 56-128 3-81 (168)
161 4f02_A Polyadenylate-binding p 99.5 3.3E-14 1.1E-18 116.4 10.8 86 56-141 15-129 (213)
162 1fj7_A Nucleolin RBD1, protein 99.5 1.8E-14 6.3E-19 105.1 8.0 73 56-129 17-94 (101)
163 2dnn_A RNA-binding protein 12; 99.5 2.7E-14 9.1E-19 109.5 9.1 75 56-132 16-95 (109)
164 2diu_A KIAA0430 protein; struc 99.5 1.6E-14 5.5E-19 112.1 7.6 68 58-129 11-83 (96)
165 2fc8_A NCL protein; structure 99.5 2.5E-14 8.5E-19 104.3 8.0 75 55-129 14-91 (102)
166 3egn_A RNA-binding protein 40; 99.5 1.3E-14 4.3E-19 112.5 6.5 73 56-128 45-128 (143)
167 2yh0_A Splicing factor U2AF 65 99.5 1.9E-14 6.5E-19 113.3 7.1 75 55-129 113-193 (198)
168 1fxl_A Paraneoplastic encephal 99.5 3.3E-14 1.1E-18 108.2 8.1 72 56-127 88-167 (167)
169 1b7f_A Protein (SXL-lethal pro 99.5 3.2E-14 1.1E-18 109.0 7.9 72 56-127 89-168 (168)
170 2lcw_A RNA-binding protein FUS 99.3 1.3E-15 4.5E-20 114.3 0.0 76 56-131 7-96 (116)
171 3nmr_A Cugbp ELAV-like family 99.5 8.5E-14 2.9E-18 107.0 9.7 86 56-141 3-121 (175)
172 1wez_A HnRNP H', FTP-3, hetero 99.5 1.9E-14 6.4E-19 107.7 5.6 75 55-131 14-93 (102)
173 2cjk_A Nuclear polyadenylated 99.5 4.6E-14 1.6E-18 108.4 7.3 73 56-129 87-165 (167)
174 3ue2_A Poly(U)-binding-splicin 99.5 5.4E-14 1.9E-18 109.7 7.8 77 56-132 20-111 (118)
175 3u1l_A PRE-mRNA-splicing facto 99.5 3.8E-14 1.3E-18 123.6 7.7 76 55-130 133-229 (240)
176 1qm9_A Polypyrimidine tract-bi 99.5 5E-14 1.7E-18 112.2 7.4 74 56-129 120-196 (198)
177 3smz_A Protein raver-1, ribonu 99.5 1.4E-13 4.8E-18 115.5 10.2 85 56-141 22-121 (284)
178 1fje_B Nucleolin RBD12, protei 99.5 4.9E-14 1.7E-18 109.6 6.5 75 55-129 98-173 (175)
179 2hgm_A HNRPF protein, heteroge 99.5 3.8E-14 1.3E-18 112.1 6.0 77 55-133 41-124 (126)
180 3s6e_A RNA-binding protein 39; 99.5 1.7E-13 5.7E-18 106.6 9.5 82 56-137 7-100 (114)
181 2adc_A Polypyrimidine tract-bi 99.5 1.4E-13 4.7E-18 113.9 9.5 76 55-130 33-110 (229)
182 2adc_A Polypyrimidine tract-bi 99.5 1.2E-13 4E-18 114.3 8.8 74 56-129 151-227 (229)
183 1l3k_A Heterogeneous nuclear r 99.5 1.1E-13 3.9E-18 108.7 8.3 75 56-131 104-184 (196)
184 1qm9_A Polypyrimidine tract-bi 99.5 9.5E-14 3.3E-18 110.6 7.8 74 57-130 4-79 (198)
185 3pgw_A U1-A; protein-RNA compl 99.5 1.3E-13 4.4E-18 115.7 8.9 76 55-130 8-90 (282)
186 2xs2_A Deleted in azoospermia- 99.5 4.6E-14 1.6E-18 103.1 5.2 72 55-128 8-84 (102)
187 1l3k_A Heterogeneous nuclear r 99.5 2E-13 6.9E-18 107.3 9.0 74 55-129 12-91 (196)
188 2cjk_A Nuclear polyadenylated 99.4 4.1E-13 1.4E-17 103.1 9.5 84 56-141 3-113 (167)
189 2hgn_A Heterogeneous nuclear r 99.4 3.1E-14 1.1E-18 113.9 3.4 74 56-131 46-124 (139)
190 1wf0_A TDP-43, TAR DNA-binding 99.4 1.9E-13 6.4E-18 97.7 7.1 72 56-129 5-77 (88)
191 3d2w_A TAR DNA-binding protein 99.4 3.4E-13 1.2E-17 98.4 8.5 72 55-130 10-84 (89)
192 2ghp_A U4/U6 snRNA-associated 99.4 2.4E-13 8.1E-18 114.6 8.5 73 56-129 210-290 (292)
193 3pgw_S U1-70K; protein-RNA com 99.4 2.2E-13 7.5E-18 126.0 8.9 77 56-132 102-184 (437)
194 2j8a_A Histone-lysine N-methyl 99.4 2E-13 6.7E-18 111.9 7.5 82 57-138 3-104 (136)
195 2dnl_A Cytoplasmic polyadenyla 99.4 3.8E-13 1.3E-17 101.2 7.9 71 55-128 7-86 (114)
196 3smz_A Protein raver-1, ribonu 99.4 1.3E-13 4.3E-18 115.8 5.7 77 56-132 184-266 (284)
197 3tyt_A Heterogeneous nuclear r 99.4 2.9E-13 9.9E-18 112.4 7.3 72 56-127 123-204 (205)
198 3tht_A Alkylated DNA repair pr 99.4 4.9E-13 1.7E-17 121.9 8.2 73 55-127 17-96 (345)
199 2ghp_A U4/U6 snRNA-associated 99.4 1.8E-12 6E-17 109.2 10.4 72 56-127 117-194 (292)
200 1jmt_A Splicing factor U2AF 35 99.4 3.3E-13 1.1E-17 102.1 4.4 58 71-128 41-104 (104)
201 1fje_B Nucleolin RBD12, protei 99.4 2.1E-12 7E-17 100.4 8.4 74 55-129 12-90 (175)
202 2voo_A Lupus LA protein; RNA-b 99.3 1.7E-12 5.9E-17 107.3 8.1 73 56-129 109-186 (193)
203 2d9o_A DNAJ (HSP40) homolog, s 99.3 9.1E-12 3.1E-16 94.7 10.1 62 66-129 27-89 (100)
204 3sde_A Paraspeckle component 1 99.3 7.9E-12 2.7E-16 105.5 8.1 74 57-130 97-179 (261)
205 3dxb_A Thioredoxin N-terminall 99.1 6.6E-11 2.3E-15 97.4 7.1 64 69-132 142-215 (222)
206 1owx_A Lupus LA protein, SS-B, 99.0 7.9E-10 2.7E-14 88.0 8.9 82 57-138 19-104 (121)
207 2dnr_A Synaptojanin-1; RRM dom 98.8 1.7E-08 5.6E-13 77.6 7.0 56 71-129 30-85 (91)
208 1ufw_A Synaptojanin 2; RNP dom 98.5 2.4E-07 8.3E-12 71.7 7.0 71 55-128 14-93 (95)
209 1wey_A Calcipressin 1; structu 98.2 3E-06 1E-10 66.6 7.4 76 56-131 5-85 (104)
210 2l9w_A U4/U6 snRNA-associated- 98.0 2.2E-05 7.5E-10 63.0 8.8 77 57-135 22-103 (117)
211 1wwh_A Nucleoporin 35, nucleop 97.8 0.0001 3.4E-09 59.0 9.1 85 54-140 22-107 (119)
212 3pq1_A Poly(A) RNA polymerase; 97.6 2.7E-05 9.2E-10 73.9 3.6 55 56-111 53-108 (464)
213 3p3d_A Nucleoporin 53; structu 97.4 0.00049 1.7E-08 56.1 7.6 80 55-136 6-105 (132)
214 2kn4_A Immunoglobulin G-bindin 96.7 0.0034 1.2E-07 48.4 6.4 53 90-142 11-97 (158)
215 2dhx_A Poly (ADP-ribose) polym 96.7 0.0087 3E-07 47.0 8.7 65 58-125 10-79 (104)
216 2i2y_A Fusion protein consists 96.0 0.0039 1.3E-07 48.0 3.0 39 90-129 11-50 (150)
217 1uw4_A UPF3X; nonsense mediate 95.5 0.042 1.4E-06 41.6 7.0 72 57-128 2-86 (91)
218 1whv_A Poly(A)-specific ribonu 94.3 0.043 1.5E-06 42.9 4.2 52 58-113 18-70 (100)
219 3ctr_A Poly(A)-specific ribonu 93.3 0.046 1.6E-06 42.8 2.7 51 59-113 9-60 (101)
220 2l08_A Regulator of nonsense t 89.7 0.35 1.2E-05 37.2 4.2 70 56-128 9-94 (97)
221 3fry_A Probable copper-exporti 88.7 1.4 4.8E-05 29.3 6.3 54 58-112 8-61 (73)
222 3dxs_X Copper-transporting ATP 86.0 2.5 8.5E-05 27.7 6.2 54 59-112 6-63 (74)
223 2kt2_A Mercuric reductase; nme 85.1 5 0.00017 25.1 7.1 53 59-111 4-59 (69)
224 1yg0_A COP associated protein; 85.0 3.2 0.00011 25.5 6.1 53 59-111 5-60 (66)
225 1cpz_A Protein (COPZ); copper 84.9 5 0.00017 24.7 7.3 53 59-111 4-60 (68)
226 1q8l_A Copper-transporting ATP 83.3 6.5 0.00022 26.3 7.5 57 56-112 10-70 (84)
227 2xmw_A PACS-N, cation-transpor 83.2 5 0.00017 25.0 6.5 54 58-111 6-62 (71)
228 1osd_A MERP, hypothetical prot 82.6 5.7 0.0002 24.8 6.6 55 58-112 6-64 (72)
229 1mwy_A ZNTA; open-faced beta-s 81.5 8 0.00027 24.7 7.1 55 58-112 6-62 (73)
230 3cjk_B Copper-transporting ATP 81.3 6.2 0.00021 25.2 6.5 54 59-112 6-63 (75)
231 1kvi_A Copper-transporting ATP 81.3 6.5 0.00022 25.4 6.7 55 58-112 11-69 (79)
232 1yjr_A Copper-transporting ATP 80.9 6 0.00021 25.0 6.3 54 58-111 7-64 (75)
233 2l3m_A Copper-ION-binding prot 80.6 5.5 0.00019 25.0 6.0 53 59-111 9-65 (71)
234 4a4j_A Pacszia, cation-transpo 80.5 2.8 9.7E-05 26.9 4.6 53 59-111 6-61 (69)
235 3lpe_A Putative transcription 79.7 10 0.00036 27.8 8.0 49 83-137 40-91 (92)
236 3pgw_S U1-70K; protein-RNA com 79.3 0.22 7.5E-06 45.9 -1.6 23 120-142 103-129 (437)
237 1opz_A Potential copper-transp 79.2 9.3 0.00032 23.9 7.0 55 58-112 9-67 (76)
238 1fvq_A Copper-transporting ATP 78.8 6.8 0.00023 24.5 6.0 55 58-112 5-62 (72)
239 2kyz_A Heavy metal binding pro 78.7 4.8 0.00017 25.5 5.3 52 59-111 5-56 (67)
240 1aw0_A Menkes copper-transport 78.4 4.9 0.00017 25.2 5.2 55 58-112 6-64 (72)
241 2qif_A Copper chaperone COPZ; 77.9 9.1 0.00031 23.1 6.5 53 59-111 6-62 (69)
242 2ew9_A Copper-transporting ATP 76.1 7.3 0.00025 28.3 6.3 55 58-112 83-141 (149)
243 4e8u_A Putative uncharacterize 75.6 3.5 0.00012 34.7 4.8 75 59-133 15-117 (172)
244 1y3j_A Copper-transporting ATP 74.9 6.4 0.00022 25.4 5.1 54 59-112 7-64 (77)
245 2ldi_A Zinc-transporting ATPas 73.8 11 0.00038 23.0 5.9 53 59-111 7-63 (71)
246 2g9o_A Copper-transporting ATP 73.4 7.1 0.00024 27.0 5.3 75 58-137 6-84 (90)
247 3d45_A Poly(A)-specific ribonu 71.4 6.3 0.00022 37.2 6.0 55 56-113 440-494 (507)
248 1p6t_A Potential copper-transp 71.2 10 0.00035 27.7 6.1 54 59-112 78-135 (151)
249 3iwl_A Copper transport protei 70.8 16 0.00056 23.6 6.4 52 59-112 6-58 (68)
250 2ofg_X Zinc-transporting ATPas 70.2 17 0.00057 26.3 6.9 55 58-112 11-69 (111)
251 2hiy_A Hypothetical protein; C 69.1 14 0.00047 30.5 7.0 87 55-143 4-96 (183)
252 1jww_A Potential copper-transp 67.8 14 0.00047 23.6 5.5 53 59-111 7-63 (80)
253 4eyt_A Telomerase associated p 67.6 29 0.00099 27.3 8.1 74 57-132 13-95 (129)
254 1nz8_A Transcription antitermi 66.7 9.7 0.00033 28.8 5.2 58 82-140 52-116 (119)
255 2kkh_A Putative heavy metal tr 65.3 30 0.001 23.6 7.7 55 58-112 19-77 (95)
256 2xmm_A SSR2857 protein, ATX1; 63.6 21 0.00073 21.4 6.1 53 59-111 5-58 (64)
257 2k2p_A Uncharacterized protein 55.8 25 0.00085 24.3 5.4 54 58-111 25-79 (85)
258 2rop_A Copper-transporting ATP 53.6 36 0.0012 26.7 6.6 55 58-112 125-183 (202)
259 3ly1_A Putative histidinol-pho 52.8 57 0.002 26.7 7.9 64 72-140 275-346 (354)
260 1cc8_A Protein (metallochapero 49.8 49 0.0017 21.3 6.4 53 59-112 9-63 (73)
261 1m1h_A Transcription antitermi 49.0 25 0.00084 30.5 5.3 49 89-140 133-185 (248)
262 2crl_A Copper chaperone for su 48.4 28 0.00097 24.7 4.8 52 59-111 23-75 (98)
263 2lfv_A Protein DAMX; cell divi 50.0 4.8 0.00016 30.9 0.0 52 59-114 28-86 (106)
264 3qqw_A Putative citrate lyase; 43.2 36 0.0012 30.3 5.5 78 55-138 23-107 (332)
265 2cpq_A FragIle X mental retard 42.1 61 0.0021 24.2 5.9 46 69-115 33-78 (91)
266 3bb5_A Stress responsive alpha 40.8 95 0.0032 23.4 6.9 62 59-138 24-93 (121)
267 2aj0_A Probable cadmium-transp 39.9 67 0.0023 20.0 6.0 44 59-102 7-50 (71)
268 2oug_A Transcriptional activat 38.4 24 0.00081 27.6 3.2 59 81-140 41-101 (162)
269 4fgs_A Probable dehydrogenase 38.2 52 0.0018 28.3 5.6 42 96-140 57-98 (273)
270 2qyc_A Ferredoxin-like protein 37.7 75 0.0026 22.8 5.7 60 59-138 8-75 (103)
271 1fg7_A Histidinol phosphate am 35.9 1.7E+02 0.0059 24.3 8.4 66 72-140 278-352 (356)
272 3get_A Histidinol-phosphate am 35.7 1.7E+02 0.006 24.0 8.3 64 71-139 288-360 (365)
273 4fn4_A Short chain dehydrogena 33.9 41 0.0014 28.5 4.3 70 59-140 10-79 (254)
274 3bgu_A Ferredoxin-like protein 32.3 82 0.0028 23.6 5.3 60 59-138 25-92 (116)
275 3p04_A Uncharacterized BCR; SE 31.7 63 0.0021 24.0 4.4 43 94-140 7-51 (87)
276 3k9d_A LMO1179 protein, aldehy 30.5 60 0.002 29.7 5.0 54 78-142 341-395 (464)
277 2oqb_A Histone-arginine methyl 30.2 41 0.0014 26.8 3.3 29 113-141 76-104 (117)
278 3b98_A Prostaglandin I2 syntha 29.9 40 0.0014 28.9 3.6 36 70-105 41-76 (475)
279 3prl_A NADP-dependent glyceral 29.8 1.1E+02 0.0036 28.6 6.6 66 59-142 371-436 (505)
280 3r4i_A Citrate lyase; TIM beta 29.1 1.7E+02 0.0059 25.9 7.7 77 56-138 23-106 (339)
281 1wnd_A Putative betaine aldehy 29.0 1.8E+02 0.0063 26.9 8.1 66 59-142 384-449 (495)
282 1cp2_A CP2, nitrogenase iron p 29.0 35 0.0012 27.5 2.8 13 69-81 189-201 (269)
283 3ts2_A Protein LIN-28 homolog 28.9 8.2 0.00028 30.9 -0.9 28 71-100 2-29 (148)
284 2cqy_A Propionyl-COA carboxyla 28.8 79 0.0027 21.6 4.4 43 69-112 33-77 (108)
285 2a1i_A DNA excision repair pro 28.7 23 0.00078 29.0 1.7 44 96-140 88-132 (146)
286 3h7h_B Transcription elongatio 28.3 41 0.0014 25.6 3.0 53 82-137 40-94 (106)
287 4g81_D Putative hexonate dehyd 28.0 36 0.0012 29.0 2.9 71 59-141 12-82 (255)
288 3my7_A Alcohol dehydrogenase/a 27.9 68 0.0023 29.2 4.9 55 78-142 336-393 (452)
289 2l69_A Rossmann 2X3 fold prote 27.8 1.5E+02 0.0052 23.3 6.2 65 66-141 8-76 (134)
290 3bde_A MLL5499 protein; stress 26.4 1.4E+02 0.0048 22.5 5.8 60 59-138 24-90 (120)
291 3t7c_A Carveol dehydrogenase; 25.8 92 0.0031 25.9 5.0 81 58-139 30-111 (299)
292 2rop_A Copper-transporting ATP 25.6 1.3E+02 0.0044 23.4 5.5 55 58-112 23-81 (202)
293 1deq_A Fibrinogen (alpha chain 25.4 1.8E+02 0.0063 27.3 7.3 17 166-182 304-320 (390)
294 3s55_A Putative short-chain de 25.3 83 0.0029 25.6 4.6 81 58-139 12-93 (281)
295 3ld6_A Lanosterol 14-alpha dem 25.0 1.3E+02 0.0043 26.0 5.8 34 70-106 34-67 (461)
296 3bn7_A Ferredoxin-like protein 24.9 1.6E+02 0.0055 22.1 5.8 65 59-138 24-95 (120)
297 2j6l_A Aldehyde dehydrogenase 24.6 1.7E+02 0.0059 27.0 7.0 61 59-137 385-445 (500)
298 4h7n_A Aldehyde dehydrogenase; 24.0 1.4E+02 0.0048 27.2 6.3 66 59-142 349-414 (474)
299 2lqo_A Putative glutaredoxin R 23.1 1.4E+02 0.005 21.3 5.0 61 70-141 17-84 (92)
300 4hhu_A OR280; engineered prote 23.0 1.9E+02 0.0065 23.6 6.1 54 59-112 45-104 (170)
301 1deq_A Fibrinogen (alpha chain 22.8 2.3E+02 0.0079 26.6 7.4 29 155-183 306-334 (390)
302 3pxx_A Carveol dehydrogenase; 22.7 1E+02 0.0035 24.9 4.6 81 58-139 12-93 (287)
303 4ici_A Putative flavoprotein; 22.7 2.3E+02 0.0079 22.0 6.5 63 71-140 104-169 (171)
304 2roe_A Heavy metal binding pro 22.5 1.4E+02 0.0048 18.2 5.3 53 59-111 4-57 (66)
305 3kki_A CAI-1 autoinducer synth 22.5 2.7E+02 0.0094 23.4 7.4 50 91-140 334-398 (409)
306 4iiu_A 3-oxoacyl-[acyl-carrier 21.8 2.4E+02 0.0083 22.6 6.7 72 57-139 27-98 (267)
307 4fs3_A Enoyl-[acyl-carrier-pro 21.8 1E+02 0.0034 25.2 4.4 38 101-140 44-81 (256)
308 2cs4_A Protein C12ORF2; GTP bi 21.7 70 0.0024 24.4 3.2 29 60-88 20-49 (95)
309 1w23_A Phosphoserine aminotran 21.7 3.2E+02 0.011 22.2 7.4 68 72-139 273-353 (360)
310 2ew9_A Copper-transporting ATP 21.6 2.2E+02 0.0075 20.1 6.6 54 59-112 8-65 (149)
311 3j09_A COPA, copper-exporting 21.6 1.7E+02 0.0056 28.4 6.5 56 58-113 5-64 (723)
312 3n9y_A Cholesterol SIDE-chain 21.6 1.6E+02 0.0056 25.2 5.9 36 71-109 36-71 (487)
313 3gk3_A Acetoacetyl-COA reducta 21.3 2.9E+02 0.01 22.2 7.1 71 58-139 27-97 (269)
314 1c9o_A CSPB, cold-shock protei 21.2 32 0.0011 23.6 1.1 22 78-101 1-22 (66)
315 3b6h_A Prostacyclin synthase; 21.1 60 0.002 28.2 3.0 21 70-90 41-61 (498)
316 3iwj_A Putative aminoaldehyde 21.1 1.9E+02 0.0064 26.7 6.6 66 59-142 378-443 (503)
317 3ftp_A 3-oxoacyl-[acyl-carrier 21.1 1.1E+02 0.0037 25.2 4.5 70 58-139 30-99 (270)
318 3ucx_A Short chain dehydrogena 21.0 1.1E+02 0.0036 24.9 4.4 70 58-139 13-82 (264)
319 2c0r_A PSAT, phosphoserine ami 20.9 3E+02 0.01 22.5 7.2 67 73-139 275-354 (362)
320 3sbc_A Peroxiredoxin TSA1; alp 20.9 1.2E+02 0.0042 25.4 4.8 73 63-138 115-213 (216)
321 1o20_A Gamma-glutamyl phosphat 20.8 2.2E+02 0.0076 25.6 6.8 44 95-142 329-372 (427)
322 3euc_A Histidinol-phosphate am 20.7 3.5E+02 0.012 22.1 8.2 48 92-140 306-362 (367)
323 3i3k_A Lanosterol 14-alpha dem 20.4 1.8E+02 0.0061 24.9 5.8 35 70-107 34-68 (461)
324 3edm_A Short chain dehydrogena 20.4 2.7E+02 0.0091 22.4 6.7 71 58-139 10-80 (259)
325 4ghk_A Gamma-glutamyl phosphat 20.3 2.1E+02 0.0071 26.0 6.6 45 94-142 345-389 (444)
326 1uu1_A Histidinol-phosphate am 20.3 3.4E+02 0.012 22.0 7.4 65 71-139 263-331 (335)
327 2w8n_A Succinate-semialdehyde 20.3 2.2E+02 0.0074 26.2 6.7 66 59-142 375-440 (487)
328 3cam_A Cold-shock domain famil 20.0 35 0.0012 23.6 1.1 21 79-101 2-22 (67)
No 1
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=100.00 E-value=1.7e-34 Score=221.16 Aligned_cols=86 Identities=67% Similarity=1.123 Sum_probs=84.3
Q ss_pred CcccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH
Q psy10308 53 GWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 53 ~~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev 132 (225)
.|+++||+|+||++++||++||+||+|||||++||++++||||||+|.+++||++||++||+|+|++++|.|+||+|+||
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e~~~ 83 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEV 83 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCHHHH
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCHHHH
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q psy10308 133 QSLLAH 138 (225)
Q Consensus 133 ~~~~~~ 138 (225)
++||||
T Consensus 84 ~~~~~~ 89 (89)
T 2wbr_A 84 QSIMQH 89 (89)
T ss_dssp HHHHCC
T ss_pred HHHhhC
Confidence 999997
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=128.23 Aligned_cols=73 Identities=21% Similarity=0.251 Sum_probs=68.7
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
+.|+|.||++.+++++|+++|.+||+|..++| +..+|||||+|.+.++|++|++.||+..|.++.|.|++|..
T Consensus 20 t~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 46999999999999999999999999999998 34589999999999999999999999999999999999964
No 3
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=5.8e-18 Score=123.68 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=71.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..+++..++|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 455799999999999999999999999999999999999999999999999999999999999999999999975
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=124.20 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=77.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++| +.++|||||.|.+.++|++|++.||+..|.++.|.|++|..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 447999999999999999999999999999998 35589999999999999999999999999999999999984
Q ss_pred -HHHHHHHHhhcc
Q psy10308 130 -AEVQSLLAHLSA 141 (225)
Q Consensus 130 -~ev~~~~~~~~~ 141 (225)
.+-.++++....
T Consensus 86 ~~~~~~~~~~~~~ 98 (110)
T 3s8s_A 86 GQQRMKYYELIVN 98 (110)
T ss_dssp THHHHHHHHHHHT
T ss_pred CcHHHHHHHHhhc
Confidence 455677776543
No 5
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=1.8e-17 Score=125.50 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=69.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
++.|+|.||++.+++++|+++|.+||+|..++|- .++|||||+|.+.++|++||+.||+..|.++.|.|++|..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4579999999999999999999999999999983 3489999999999999999999999999999999999864
No 6
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.6e-17 Score=115.72 Aligned_cols=75 Identities=16% Similarity=0.249 Sum_probs=70.0
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|++.||+..+.+..|.|++|+
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence 45679999999999999999999999999999983 458999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 94 ~ 94 (95)
T 2cqc_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 7
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=7.3e-17 Score=115.94 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=69.0
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|++.||+..|.+..|.|+||.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 45579999999999999999999999999999983 458999999999999999999999999999999999984
No 8
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.4e-17 Score=117.12 Aligned_cols=75 Identities=16% Similarity=0.225 Sum_probs=71.0
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceec--CceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILG--NTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg--~ttI~aeFAse 129 (225)
.+.-|+|.||++.+++++|+++|.+||+|..+++-..+|||||+|.+.++|++|++.||+.+|. +..|.|+||..
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~ 92 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS 92 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCC
Confidence 3457999999999999999999999999999999888999999999999999999999999999 99999999974
No 9
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=117.24 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=69.6
Q ss_pred cceEEecCCCCCcchhHHH----HHHHhhCCeeEEEecCC---CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLK----TLCVQHGPLQNFHLYLN---HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr----~Lc~qhGpV~tfhlnl~---~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
..-|+|.||++.+++++|+ ++|.+||+|..++|..+ +|||||+|.+.++|++|++.||+..|.++.|.|++|.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 4569999999999999999 99999999999999644 9999999999999999999999999999999999996
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 89 ~ 89 (96)
T 2dgx_A 89 G 89 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 10
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=1.3e-16 Score=119.04 Aligned_cols=86 Identities=14% Similarity=0.195 Sum_probs=78.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe---cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC----
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL---YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS---- 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl---nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs---- 128 (225)
..-|+|.||++.+++++|+++|.+||+|..+++ ...+|+|||+|.+.++|++|++.||+..+.+..|.|++|.
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 347999999999999999999999999999998 3458999999999999999999999999999999999998
Q ss_pred ---------hHHHHHHHHhhcc
Q psy10308 129 ---------DAEVQSLLAHLSA 141 (225)
Q Consensus 129 ---------e~ev~~~~~~~~~ 141 (225)
++|+++++++.+.
T Consensus 88 ~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 88 FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp TTTSCHHHHHHHHHHHHHHHCC
T ss_pred hhhhhHhHhHHHHHHHHHHhCC
Confidence 6777888887654
No 11
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=116.10 Aligned_cols=75 Identities=13% Similarity=0.196 Sum_probs=70.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-. .+|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 356799999999999999999999999999999844 589999999999999999999999999999999999976
No 12
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=116.64 Aligned_cols=75 Identities=12% Similarity=0.280 Sum_probs=70.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC----CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN----HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~----~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|..+ +|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 14 TPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 4567999999999999999999999999999998544 99999999999999999999999999999999999975
No 13
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=113.19 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=69.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeFAs 128 (225)
..-|+|.||++.+++++|+++|.+||+|..+++..++|+|||+|.+.++|++|++.| |+..+.+..|.|++|.
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456999999999999999999999999999999999999999999999999999999 9999999999999984
No 14
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.69 E-value=4.5e-17 Score=119.30 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=66.7
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhC-CeeEEEe------cCCCceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeCCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHG-PLQNFHL------YLNHSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEAPS 128 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhG-pV~tfhl------nl~~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeFAs 128 (225)
+-|+|+||++.++|++|+++|.+|| +|..++| +..+|||||+|.+.++|++|++.| |+..+.++.|.|+||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 3589999999999999999999999 8999998 356899999999999999999998 4578999999999996
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 82 ~ 82 (91)
T 2lxi_A 82 P 82 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 15
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-17 Score=123.39 Aligned_cols=76 Identities=21% Similarity=0.169 Sum_probs=72.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-..+|+|||+|.+.++|++|++.||+..|.+..|.|++|.+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4567999999999999999999999999999999899999999999999999999999999999999999999763
No 16
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.2e-17 Score=119.17 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=71.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..+++..++|||||+|.+.++|++|+..||+..+.+..|.|++|.+
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999975
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=4.7e-17 Score=114.25 Aligned_cols=73 Identities=11% Similarity=0.203 Sum_probs=68.5
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
.-|+|.||++.+++++|+++|.+||+|..+++-.+ +|+|||+|.+.++|++|++.||+..+.+..|.|++|.+
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 45999999999999999999999999999998433 89999999999999999999999999999999999975
No 18
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=118.24 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=70.1
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecC-----ceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGN-----TTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~-----ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|..+ |||||+|.+.++|++||+.||+.+|.+ ..|.|++|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~ 92 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 92 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence 4567999999999999999999999999999999776 999999999999999999999999999 9999999986
No 19
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=8.4e-17 Score=113.38 Aligned_cols=74 Identities=18% Similarity=0.288 Sum_probs=68.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|++.||+..+.+..|.|++|.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34579999999999999999999999999999983 359999999999999999999999999999999999984
No 20
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=7.4e-17 Score=116.10 Aligned_cols=75 Identities=24% Similarity=0.291 Sum_probs=69.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|.. .+|+|||+|.+.++|++|++.||+..|.+..|.|++|+.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 456799999999999999999999999999999844 389999999999999999999999999999999999974
No 21
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=119.14 Aligned_cols=75 Identities=11% Similarity=0.203 Sum_probs=71.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
..-|+|.||++.+++++|+++|.+||+|..++|..++|||||+|.+.++|++|++.||+..|.+..|.|++|.+.
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 457999999999999999999999999999999988999999999999999999999999999999999999763
No 22
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-16 Score=116.34 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=70.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-------CceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-------HSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEA 126 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-------~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeF 126 (225)
...-|+|.||++.+++++|+++|.+||+|..++|..+ +|||||+|.+.++|++|++.| |+..|.+..|.|++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~ 93 (107)
T 2cph_A 14 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 93 (107)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEe
Confidence 4557999999999999999999999999999999554 899999999999999999999 99999999999999
Q ss_pred CChH
Q psy10308 127 PSDA 130 (225)
Q Consensus 127 Ase~ 130 (225)
|...
T Consensus 94 a~~~ 97 (107)
T 2cph_A 94 ADSE 97 (107)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9753
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=9.9e-17 Score=115.43 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=69.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
+.-|+|.||++.+++++|+++|.+||+|..+++. ..+|+|||+|.+.++|++|++.||+..|.+..|.|++|.+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 4579999999999999999999999999999984 3489999999999999999999999999999999999975
No 24
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=121.52 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=70.9
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc--ceecCceEEEeCCChHHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN--CILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~ttI~aeFAse~ev 132 (225)
+.-|+|.||++.+++++|+++|.+||+|..+.|-.+||+|||+|.+.++|++|++.||+ +.|.+..|.|+||...++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 45699999999999999999999999999999988899999999999999999999976 469999999999986543
No 25
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=118.55 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=69.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC---CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL---NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl---~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|.. .+|||||+|.+.++|++|++.||+..|.+..|.|++|.+
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 345799999999999999999999999999999843 489999999999999999999999999999999999975
No 26
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.68 E-value=4.7e-17 Score=121.99 Aligned_cols=76 Identities=17% Similarity=0.192 Sum_probs=69.4
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCC--eeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccc----eecCce
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGP--LQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNC----ILGNTT 121 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGp--V~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c----~Lg~tt 121 (225)
+.+.-|+|+||++.+++++|+++|.+||+ |.+++| +.+||||||+|.+.++|++|++.||+. .|.++.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 56788999999999999999999999995 678887 356999999999999999999999996 589999
Q ss_pred EEEeCCCh
Q psy10308 122 IFAEAPSD 129 (225)
Q Consensus 122 I~aeFAse 129 (225)
|.|+||..
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999975
No 27
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9e-17 Score=124.52 Aligned_cols=78 Identities=14% Similarity=0.240 Sum_probs=71.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc--ceecCceEEEeCCChHHH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN--CILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~ttI~aeFAse~ev 132 (225)
...-|+|.||++.++|++|+++|.+||+|.++.|-.+||||||+|.+.++|++|++.|++ .+|.++.|.|+||...++
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 345799999999999999999999999999999988999999999999999999999864 899999999999986543
No 28
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.9e-16 Score=115.08 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=70.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-. .+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 456799999999999999999999999999999843 46999999999999999999999999999999999998
Q ss_pred hH
Q psy10308 129 DA 130 (225)
Q Consensus 129 e~ 130 (225)
..
T Consensus 87 ~~ 88 (99)
T 1whw_A 87 IK 88 (99)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 29
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.8e-16 Score=114.62 Aligned_cols=73 Identities=14% Similarity=0.183 Sum_probs=69.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.|| .+++++|+++|.+||+|..++|...+|+|||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3457999997 899999999999999999999999999999999999999999999999999999999999975
No 30
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.1e-16 Score=116.39 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=68.5
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
..-|+|.||++.+++++|+++|.+||+|..+++. +|||||+|.+.++|++|++.||+..|.+..|.|++|...
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 4569999999999999999999999999999865 789999999999999999999999999999999999753
No 31
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=113.75 Aligned_cols=73 Identities=18% Similarity=0.235 Sum_probs=69.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..+++. +|||||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 45679999999999999999999999999999986 89999999999999999999999999999999999974
No 32
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.68 E-value=1.9e-16 Score=116.12 Aligned_cols=75 Identities=15% Similarity=0.158 Sum_probs=69.5
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-----CceEEEEeCCHHHHHHHHhhhccceecC---ceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-----HSLALAKYSTREEAIKAQGNLNNCILGN---TTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-----~G~AlVrYstkeEA~kAi~aLn~c~Lg~---ttI~aeFA 127 (225)
..-|+|.||++.+++++|+++|.+||+|..++|..+ +|||||+|.+.++|++|++.||+..+.+ ..|.|++|
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 457999999999999999999999999999998544 8999999999999999999999999888 89999999
Q ss_pred ChH
Q psy10308 128 SDA 130 (225)
Q Consensus 128 se~ 130 (225)
...
T Consensus 95 ~~~ 97 (105)
T 2dnh_A 95 DTD 97 (105)
T ss_dssp CSS
T ss_pred ccC
Confidence 753
No 33
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.2e-16 Score=116.67 Aligned_cols=75 Identities=9% Similarity=0.178 Sum_probs=69.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-. .+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 90 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 90 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 345799999999999999999999999999999843 58999999999999999999999999999999999987
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 91 ~ 91 (102)
T 1x5s_A 91 K 91 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=113.22 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=68.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..+++-. .+|+|||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 44699999999999999999999999999999843 489999999999999999999999999999999999874
No 35
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.68 E-value=2.4e-16 Score=117.56 Aligned_cols=75 Identities=15% Similarity=0.250 Sum_probs=69.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-.+ +|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (115)
T 2dgo_A 14 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 93 (115)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 4557999999999999999999999999999998433 7999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 94 ~ 94 (115)
T 2dgo_A 94 R 94 (115)
T ss_dssp C
T ss_pred C
Confidence 5
No 36
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.3e-16 Score=116.42 Aligned_cols=74 Identities=18% Similarity=0.278 Sum_probs=69.5
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 4569999999999999999999999999999983 3599999999999999999999999999999999999975
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.6e-16 Score=115.46 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=70.5
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
.-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..+.+..|.|++|.+.
T Consensus 3 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 469999999999999999999999999999983 34899999999999999999999999999999999999865
Q ss_pred HH
Q psy10308 131 EV 132 (225)
Q Consensus 131 ev 132 (225)
..
T Consensus 83 ~~ 84 (96)
T 2x1f_A 83 DI 84 (96)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 38
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=115.56 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=69.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec---------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY---------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA 126 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln---------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF 126 (225)
..-|+|.||++.+++++|+++|.+||+|..++|. ..+|||||+|.+.++|++|++.||+..|.+..|.|++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4579999999999999999999999999999984 4579999999999999999999999999999999999
Q ss_pred CChH
Q psy10308 127 PSDA 130 (225)
Q Consensus 127 Ase~ 130 (225)
|...
T Consensus 85 a~~~ 88 (98)
T 2cpf_A 85 SERA 88 (98)
T ss_dssp SSCS
T ss_pred ccCC
Confidence 9753
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.7e-16 Score=114.58 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=70.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 93 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKAS 93 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 34579999999999999999999999999999984 347999999999999999999999999999999999998
Q ss_pred hH
Q psy10308 129 DA 130 (225)
Q Consensus 129 e~ 130 (225)
..
T Consensus 94 ~~ 95 (105)
T 1x5u_A 94 AH 95 (105)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 40
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=1.3e-16 Score=114.14 Aligned_cols=75 Identities=16% Similarity=0.175 Sum_probs=69.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|.. .+|||||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345799999999999999999999999999999853 589999999999999999999999999999999999874
No 41
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.6e-16 Score=116.11 Aligned_cols=84 Identities=20% Similarity=0.313 Sum_probs=75.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..+++-. .+|||||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 34699999999999999999999999999999843 389999999999999999999999999999999999997
Q ss_pred HHHHHHHHhh
Q psy10308 130 AEVQSLLAHL 139 (225)
Q Consensus 130 ~ev~~~~~~~ 139 (225)
..-..-..+.
T Consensus 88 ~~~~~~~~~~ 97 (104)
T 1p1t_A 88 EKNKEELKSL 97 (104)
T ss_dssp TTHHHHHHHH
T ss_pred ccchhhhccC
Confidence 7666555544
No 42
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.5e-16 Score=114.71 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=69.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEE-EecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF-HLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tf-hlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
+.-|+|.||++.+++++|+++|.+||+|..+ +|.. .+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 4579999999999999999999999999999 8743 48999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 85 ~ 85 (96)
T 1x5t_A 85 K 85 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 43
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=8.3e-17 Score=123.93 Aligned_cols=76 Identities=13% Similarity=0.170 Sum_probs=70.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccce--ecCceEEEeCCChHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCI--LGNTTIFAEAPSDAE 131 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~--Lg~ttI~aeFAse~e 131 (225)
+.-|+|+||++++++++|++||.+||+|..+.+-..||+|||+|.+.++|++|++.||+.. |.++.|.|+|++..|
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 4469999999999999999999999999999998899999999999999999999999875 789999999998654
No 44
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=117.56 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=69.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVAR 91 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECC
Confidence 34579999999999999999999999999999983 458999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 92 ~ 92 (103)
T 2dnm_A 92 Y 92 (103)
T ss_dssp S
T ss_pred c
Confidence 5
No 45
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.4e-16 Score=116.29 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=69.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-----CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-----HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-----~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|..+ +|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 14 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 93 (114)
T 2do0_A 14 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER 93 (114)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence 3557999999999999999999999999999998543 89999999999999999999999999999999999875
No 46
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.67 E-value=6.6e-17 Score=116.36 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=67.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- ..+|||||+|.+.++|++|++.||+..|.++.|.|++|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 34679999999999999999999999999876652 458999999999999999999999999999999999987
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 4
No 47
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=115.29 Aligned_cols=74 Identities=16% Similarity=0.306 Sum_probs=69.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|.. .+|||||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 45699999999999999999999999999999843 469999999999999999999999999999999999974
No 48
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=116.38 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=69.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
-|+|.||++.+++++|+++|.+||+|..+++..+ +|+|||+|.+.++|++|++.||+..+.+..|.|++|...
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 5899999999999999999999999999999775 999999999999999999999999999999999999864
No 49
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=118.66 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=71.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhc--cceecCceEEEeCCChHHH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLN--NCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn--~c~Lg~ttI~aeFAse~ev 132 (225)
.+.-|+|.||++.+++++|+++|.+||+|..+.|-.++|+|||+|.+.++|++|++.|| +..|.+..|.|+||...++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 93 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKEL 93 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccC
Confidence 34579999999999999999999999999999998889999999999999999999885 5789999999999986543
No 50
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=2.2e-16 Score=120.50 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=79.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCC---eeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGP---LQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGp---V~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..-|+|.||+..+++++|+++|.+||+ |..++|- ..+|||||+|.+.++|++|++ ||+..|+++.|.|..|
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKS 95 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEEC
Confidence 456999999999999999999999999 8888873 458999999999999999999 9999999999999999
Q ss_pred ChHHHHHHHHhhccc
Q psy10308 128 SDAEVQSLLAHLSAT 142 (225)
Q Consensus 128 se~ev~~~~~~~~~~ 142 (225)
+..|++..+++.+..
T Consensus 96 ~~~~~~~~~~~~~~~ 110 (118)
T 2db1_A 96 HRTEMDWVLKHSGPN 110 (118)
T ss_dssp CHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHhCCC
Confidence 999999999987654
No 51
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=2.1e-16 Score=116.30 Aligned_cols=74 Identities=18% Similarity=0.260 Sum_probs=69.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|+|||+|.+.++|++|++.||+..|.+..|.|+||+
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 45679999999999999999999999999999985 449999999999999999999999999999999999986
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.1e-16 Score=111.67 Aligned_cols=73 Identities=18% Similarity=0.229 Sum_probs=68.2
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
.-|+|.||++.+++++|+++|.+||+|..+++-. .+|+|||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 4699999999999999999999999999999822 789999999999999999999999999999999999853
No 53
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=9.3e-16 Score=114.66 Aligned_cols=76 Identities=13% Similarity=0.272 Sum_probs=69.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 103 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKR 103 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcC
Confidence 34579999999999999999999999999999984 336999999999999999999999999999999999997
Q ss_pred hH
Q psy10308 129 DA 130 (225)
Q Consensus 129 e~ 130 (225)
..
T Consensus 104 ~~ 105 (115)
T 2cpz_A 104 SK 105 (115)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2e-16 Score=120.96 Aligned_cols=75 Identities=13% Similarity=0.097 Sum_probs=70.1
Q ss_pred ccceEEecCCCC-CcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc--ceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTP-QIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN--CILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtp-Qide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~ttI~aeFAse 129 (225)
.+.-|+|.||++ .+++++|++||.+||+|..+.|-.++|+|||+|.+.++|++||+.||+ +.|.++.|.|+||..
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~ 91 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK 91 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCC
Confidence 345699999999 999999999999999999999988999999999999999999999986 569999999999974
No 55
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=113.42 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=69.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCee-EEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCce----EE
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ-NFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTT----IF 123 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~-tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt----I~ 123 (225)
.+.-|+|.||++.+++++|+++|.+||+|. .++|-. .+|||||+|.+.++|++|++.||+..+.+.. |.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 456799999999999999999999999999 999843 3699999999999999999999999999999 99
Q ss_pred EeCCCh
Q psy10308 124 AEAPSD 129 (225)
Q Consensus 124 aeFAse 129 (225)
|++|..
T Consensus 88 v~~a~~ 93 (99)
T 2div_A 88 LNYATY 93 (99)
T ss_dssp EEETTC
T ss_pred EeecCC
Confidence 999864
No 56
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.65 E-value=2.2e-16 Score=116.81 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=69.8
Q ss_pred ccceEEecCCCC------CcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecC-ce
Q psy10308 55 SGTWVLLKNLTP------QIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGN-TT 121 (225)
Q Consensus 55 ~~~wLvL~NLtp------Qide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~-tt 121 (225)
..+-|+|.||+. .+++++|+++|.+||+|..++| +..+|||||.|.+.++|++|++.||+..|.+ +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 356799999999 9999999999999999999998 3458999999999999999999999999998 99
Q ss_pred EEEeCCCh
Q psy10308 122 IFAEAPSD 129 (225)
Q Consensus 122 I~aeFAse 129 (225)
|.|++|.+
T Consensus 85 l~V~~a~~ 92 (100)
T 3ns6_A 85 LFLYTMKD 92 (100)
T ss_dssp CEEEESHH
T ss_pred EEEEECch
Confidence 99999975
No 57
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-16 Score=114.80 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=69.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 93 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK 93 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECC
Confidence 45679999999999999999999999999999983 347999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 94 ~ 94 (103)
T 2cq0_A 94 P 94 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 58
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9.4e-16 Score=114.78 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=69.0
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+ .|.+..|.|++|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~ 94 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAY 94 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEEST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcc
Confidence 45679999999999999999999999999999984 3489999999999999999999998 8999999999996
Q ss_pred hH
Q psy10308 129 DA 130 (225)
Q Consensus 129 e~ 130 (225)
..
T Consensus 95 ~~ 96 (116)
T 2cqd_A 95 LG 96 (116)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 59
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=6.4e-16 Score=111.05 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=68.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..+++. ++||||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 34569999999999999999999999999999976 67999999999999999999999999999999999974
No 60
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=9.9e-16 Score=112.99 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=69.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhc------cceecCceE
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLN------NCILGNTTI 122 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn------~c~Lg~ttI 122 (225)
....|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.|| +..|.+..|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l 93 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQL 93 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEE
Confidence 34579999999999999999999999999999984 459999999999999999999999 999999999
Q ss_pred EEeCCCh
Q psy10308 123 FAEAPSD 129 (225)
Q Consensus 123 ~aeFAse 129 (225)
.|++|..
T Consensus 94 ~v~~a~~ 100 (111)
T 1x4h_A 94 KVDLAVT 100 (111)
T ss_dssp EEECCCC
T ss_pred EEEECCC
Confidence 9999975
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.7e-16 Score=114.50 Aligned_cols=75 Identities=20% Similarity=0.312 Sum_probs=70.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|. ..+|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 92 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecc
Confidence 34579999999999999999999999999999986 4599999999999999999999999999999999999975
No 62
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-16 Score=114.63 Aligned_cols=75 Identities=15% Similarity=0.123 Sum_probs=67.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..+++ ...+|||||+|.+.++|++|++.||+..|.++.|.|++|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 3567999999999999999999999999976554 2348999999999999999999999999999999999986
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=114.95 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=68.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 4569999999999999999999999999999983 3489999999999999999999999999999999999863
No 64
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.65 E-value=3.5e-16 Score=114.89 Aligned_cols=75 Identities=21% Similarity=0.338 Sum_probs=69.1
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhcccee---cCceEEEe
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCIL---GNTTIFAE 125 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~L---g~ttI~ae 125 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..+ .+..|.|+
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~ 91 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVK 91 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEE
Confidence 34579999999999999999999999999999983 3589999999999999999999999887 88999999
Q ss_pred CCCh
Q psy10308 126 APSD 129 (225)
Q Consensus 126 FAse 129 (225)
+|..
T Consensus 92 ~a~~ 95 (106)
T 2dgp_A 92 PADS 95 (106)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 9975
No 65
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=112.22 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=68.5
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- +++|||+|.+.++|++|++.||+..+.+..|.|++|.+
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 45679999999999999999999999999999975 66999999999999999999999999999999999974
No 66
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=114.43 Aligned_cols=74 Identities=12% Similarity=0.142 Sum_probs=68.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeE--------EEec------CCCceEEEEeCCHHHHHHHHhhhccceecCc
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQN--------FHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNT 120 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~t--------fhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t 120 (225)
...-|+|.||++.+++++|+++|.+||+|.. +++. ..+|+|||+|.+.++|++|++.||+..|.+.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~ 91 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGN 91 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3457999999999999999999999999998 7773 3489999999999999999999999999999
Q ss_pred eEEEeCCC
Q psy10308 121 TIFAEAPS 128 (225)
Q Consensus 121 tI~aeFAs 128 (225)
.|.|++|+
T Consensus 92 ~l~V~~A~ 99 (99)
T 2la6_A 92 PIKVSFAT 99 (99)
T ss_dssp BCEEEECC
T ss_pred EEEEEecC
Confidence 99999985
No 67
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=116.03 Aligned_cols=73 Identities=18% Similarity=0.292 Sum_probs=67.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.++.|.|+||
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 45579999999999999999999999999999983 45999999999999999999999999999999999997
No 68
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.4e-16 Score=113.59 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=67.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCC-eeEEEecCCCceEEEEeCCHHHHHHHHhhhcc-ceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGP-LQNFHLYLNHSLALAKYSTREEAIKAQGNLNN-CILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGp-V~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~-c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+ |..+.+ ..+|||||+|.+.++|++|++.||+ .+|.+..|.|++|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 82 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS 82 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccC
Confidence 3457999999999999999999999999 555554 6799999999999999999999999 999999999999974
No 69
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=3e-16 Score=116.81 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=69.3
Q ss_pred ccceEEecCCCCC-cchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQ-IDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQ-ide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++. +++++|+++|.+||+|..+++ .+|||||+|.+.++|++|++.||+..|.+..|.|++|.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 3457999999999 999999999999999999998 899999999999999999999999999999999999964
No 70
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=2.2e-16 Score=114.05 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=64.9
Q ss_pred eEEecCCCCCcchhHHHHHHHhhC--CeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHG--PLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhG--pV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
-|+|.||++.+++++|+++|.+|| +|..+++- ..+|||||+|.+.++|++|++.||+..|.++.|.|+.|..
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 489999999999999999999999 99999983 4489999999999999999999999999999999999975
Q ss_pred H
Q psy10308 130 A 130 (225)
Q Consensus 130 ~ 130 (225)
.
T Consensus 83 ~ 83 (90)
T 3p5t_L 83 L 83 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 71
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=2.3e-16 Score=113.54 Aligned_cols=75 Identities=15% Similarity=0.148 Sum_probs=70.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
...-|+|.||++.+++++|+++|.+| +|..+++...+|+|||+|.+.++|++|++.||+..+.+..|.|++|...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 34569999999999999999999999 9999999888999999999999999999999999999999999999753
No 72
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=5.5e-16 Score=116.37 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=69.6
Q ss_pred ccceEEecCCCCCcchhHHH---HHHHhhCCeeEEEecCC---------CceEEEEeCCHHHHHHHHhhhccceecCceE
Q psy10308 55 SGTWVLLKNLTPQIDGSTLK---TLCVQHGPLQNFHLYLN---------HSLALAKYSTREEAIKAQGNLNNCILGNTTI 122 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr---~Lc~qhGpV~tfhlnl~---------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI 122 (225)
...-|+|.||++.+++++|+ ++|.+||+|..++|..+ +|||||+|.+.++|++|++.||+..|.++.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 34569999999999999999 99999999999999533 4899999999999999999999999999999
Q ss_pred EEeCCChH
Q psy10308 123 FAEAPSDA 130 (225)
Q Consensus 123 ~aeFAse~ 130 (225)
.|++|...
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 99999854
No 73
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=114.17 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=75.9
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCe-eEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPL-QNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV-~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||+..+++++|+++|.+||.| ..++| +..+|||||+|.+.++|++|++. |+..|.++.|.|++|..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 4569999999999999999999999999 77887 35699999999999999999998 99999999999999999
Q ss_pred HHHHHHHHh
Q psy10308 130 AEVQSLLAH 138 (225)
Q Consensus 130 ~ev~~~~~~ 138 (225)
.+..++...
T Consensus 94 ~~~~~~~~~ 102 (114)
T 2cpy_A 94 EDMREIEKN 102 (114)
T ss_dssp HHHHHHHHS
T ss_pred HHHHHHHhC
Confidence 999998874
No 74
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=111.41 Aligned_cols=74 Identities=4% Similarity=0.105 Sum_probs=68.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||+..+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++ ||+..|.+..|.|++|.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECC
Confidence 34579999999999999999999999999999983 458999999999999999999 99999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 88 ~ 88 (99)
T 2dgs_A 88 P 88 (99)
T ss_dssp C
T ss_pred C
Confidence 4
No 75
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=8e-16 Score=111.15 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=70.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEE-Eec--CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF-HLY--LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tf-hln--l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev 132 (225)
..-|+|.||++.+++++|+++|.+||+|..+ +|. ...|.|||+|.+.++|++|++.||+..|.+..|.|++|.+.|.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 94 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEMA 94 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCCS
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcccc
Confidence 4569999999999999999999999999999 564 4466799999999999999999999999999999999997653
No 76
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-15 Score=110.47 Aligned_cols=75 Identities=20% Similarity=0.155 Sum_probs=67.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCee-EEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ-NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~-tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|. .+.....+|||||+|.+.++|++|++.||+..|.+..|.|++|.+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 345799999999999999999999999995 333367799999999999999999999999999999999999974
No 77
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.64 E-value=1e-15 Score=112.91 Aligned_cols=73 Identities=10% Similarity=0.171 Sum_probs=68.6
Q ss_pred ccceEEecCCCC-CcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTP-QIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtp-Qide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
.+.-|+|.||++ .+++++|+++|.+||+|..+++ .+|||||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 345799999998 9999999999999999999998 599999999999999999999999999999999999864
No 78
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.64 E-value=5.2e-16 Score=107.58 Aligned_cols=68 Identities=10% Similarity=0.179 Sum_probs=64.0
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|++ ||+..+.+..|.|++|
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 7899999999999999999999999999983 347999999999999999998 9999999999999986
No 79
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-16 Score=124.86 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=72.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc--ceecCceEEEeCCChHHHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN--CILGNTTIFAEAPSDAEVQ 133 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~ttI~aeFAse~ev~ 133 (225)
+.-|+|.||++.++|++|+++|.+||+|..+.|-.++|||||+|.+.++|++|++.||+ ..|.+.+|.|+||...++.
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 45799999999999999999999999999999988899999999999999999999985 6899999999999876543
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=117.21 Aligned_cols=74 Identities=12% Similarity=0.277 Sum_probs=69.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC----CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN----HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~----~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..+++-.+ +|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 457999999999999999999999999999998544 89999999999999999999999999999999999975
No 81
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.64 E-value=2.4e-16 Score=118.07 Aligned_cols=74 Identities=12% Similarity=0.280 Sum_probs=68.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|+||.
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 34579999999999999999999999999999984 348999999999999999999999999999999999984
No 82
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.63 E-value=6.2e-16 Score=116.98 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=69.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|..+ +|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 3457999999999999999999999999999998544 9999999999999999999999999999999999996
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 101 ~ 101 (126)
T 3ex7_B 101 V 101 (126)
T ss_dssp E
T ss_pred C
Confidence 3
No 83
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=5.1e-16 Score=119.27 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=70.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 120 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA 120 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34579999999999999999999999999999983 348999999999999999999999999999999999998
Q ss_pred hH
Q psy10308 129 DA 130 (225)
Q Consensus 129 e~ 130 (225)
+.
T Consensus 121 ~~ 122 (139)
T 1u6f_A 121 SG 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 84
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.63 E-value=6.4e-16 Score=116.53 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=69.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- +|||||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 34579999999999999999999999999999987 99999999999999999999999999999999999975
No 85
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=3.8e-16 Score=124.39 Aligned_cols=84 Identities=14% Similarity=0.121 Sum_probs=77.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCC---eeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGP---LQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGp---V~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..-|+|.||++.+++++|+++|.+||+ |..++|- ..+|||||+|.+.++|++|++ ||+..|+++.|.|..|
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 456999999999999999999999999 7888873 458999999999999999999 9999999999999999
Q ss_pred ChHHHHHHHHhhc
Q psy10308 128 SDAEVQSLLAHLS 140 (225)
Q Consensus 128 se~ev~~~~~~~~ 140 (225)
+..|+++++...+
T Consensus 123 ~~~e~~~~~~~~~ 135 (136)
T 2hgl_A 123 HRTEMDWVLKHSG 135 (136)
T ss_dssp CHHHHHHHHTTSC
T ss_pred ChHHHHHHHhhcC
Confidence 9999999988764
No 86
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.63 E-value=9.1e-16 Score=108.89 Aligned_cols=73 Identities=11% Similarity=0.166 Sum_probs=67.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|+ .||+..+.+..|.|++|..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 3469999999999999999999999999999984 33899999999999999999 9999999999999999865
No 87
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=7.2e-16 Score=111.28 Aligned_cols=74 Identities=12% Similarity=0.178 Sum_probs=69.8
Q ss_pred cceEEecCCCCCcchhHHH----HHHHhhCCeeEEEec---CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLK----TLCVQHGPLQNFHLY---LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr----~Lc~qhGpV~tfhln---l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
+.-|+|.||++.+++++|+ ++|.+||+|..+++. ..+|+|||+|.+.++|++|++.||+..+.+..|.|++|.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 4579999999999999999 999999999999985 568999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 88 ~ 88 (97)
T 1nu4_A 88 T 88 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 88
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=112.68 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=68.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCee--------EEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCc
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ--------NFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNT 120 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~--------tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t 120 (225)
...-|+|.||++.+++++|+++|.+||+|. .++|.. .+|||||+|.+.++|++|++.||+..|.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 345799999999999999999999999999 588743 389999999999999999999999999999
Q ss_pred eEEEeCCCh
Q psy10308 121 TIFAEAPSD 129 (225)
Q Consensus 121 tI~aeFAse 129 (225)
.|.|++|..
T Consensus 94 ~l~V~~a~~ 102 (113)
T 2cpe_A 94 KLKVSLARK 102 (113)
T ss_dssp ECEEECSSC
T ss_pred EEEEEECCC
Confidence 999999974
No 89
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3e-15 Score=109.23 Aligned_cols=73 Identities=19% Similarity=0.255 Sum_probs=67.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhh--CCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQH--GPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qh--GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+| |.|..+++ .+|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKP 88 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 34579999999999999999999999 88988875 589999999999999999999999999999999999975
No 90
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=116.41 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=78.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCC---eeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGP---LQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGp---V~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..-|+|.||++.+++++|+++|.+||+ |..++| +..+|+|||+|.+.++|++|++ ||+..++++.|.|..|
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEI 89 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEEC
Confidence 456999999999999999999999998 899998 3458999999999999999999 9999999999999999
Q ss_pred ChHHHHHHHHhhcc
Q psy10308 128 SDAEVQSLLAHLSA 141 (225)
Q Consensus 128 se~ev~~~~~~~~~ 141 (225)
+..|++..+++...
T Consensus 90 ~~~~~~~~~~~~~~ 103 (107)
T 2lmi_A 90 NNEDVDALMKSLQV 103 (107)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHhhcc
Confidence 99999999987643
No 91
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=9.4e-16 Score=113.08 Aligned_cols=75 Identities=12% Similarity=0.146 Sum_probs=69.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCC-eeEEEec-------CCCceEEEEeCCHHHHHHHHhhhc--cceecCceEEEe
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGP-LQNFHLY-------LNHSLALAKYSTREEAIKAQGNLN--NCILGNTTIFAE 125 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGp-V~tfhln-------l~~G~AlVrYstkeEA~kAi~aLn--~c~Lg~ttI~ae 125 (225)
..-|+|.||++.+++++|+++|.+||+ |..+++. ..+|||||+|.+.++|++|++.|| +..+.+..|.|+
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~ 87 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVD 87 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEE
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEE
Confidence 456999999999999999999999999 9999985 679999999999999999999996 599999999999
Q ss_pred CCChH
Q psy10308 126 APSDA 130 (225)
Q Consensus 126 FAse~ 130 (225)
+|...
T Consensus 88 ~a~~~ 92 (109)
T 2dis_A 88 WAEPE 92 (109)
T ss_dssp ESCSS
T ss_pred EcCCC
Confidence 99743
No 92
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.2e-15 Score=113.04 Aligned_cols=75 Identities=21% Similarity=0.315 Sum_probs=69.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-. .+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 345699999999999999999999999999999843 37999999999999999999999999999999999986
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 105 ~ 105 (110)
T 1oo0_B 105 V 105 (110)
T ss_dssp E
T ss_pred c
Confidence 4
No 93
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.62 E-value=8.5e-16 Score=116.93 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=69.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...|+|.||++.+++++|+++|.+||+|..++|.. .+|||||+|.+.++|++|++.||+..|.+..|.|++|.+
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 85 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKK 85 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 35799999999999999999999999999999954 469999999999999999999999999999999999974
No 94
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=122.24 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=75.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhC--CeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHG--PLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhG--pV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..-|+|.||++.+++++|+++|.+|| +|..++|- ..+|||||+|.+.++|++||+.||+..|.+..|.|++|
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 35799999999999999999999999 99999983 44899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHh
Q psy10308 128 SDAEVQSLLAH 138 (225)
Q Consensus 128 se~ev~~~~~~ 138 (225)
....+..|=.+
T Consensus 135 ~~~~~~~~e~~ 145 (156)
T 3n9u_C 135 TRQNLSQFEAQ 145 (156)
T ss_dssp CHHHHHHHHHH
T ss_pred CCCcchhhhhh
Confidence 99888777544
No 95
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.9e-15 Score=111.21 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=67.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
...-|+|.||++.+++++|+++|.+|| |..++|- ..+|||||+|.+.++|++|+ .||+..|.+..|.|++|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 91 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVA 91 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEc
Confidence 345799999999999999999999999 9999983 44899999999999999999 99999999999999999
Q ss_pred Ch
Q psy10308 128 SD 129 (225)
Q Consensus 128 se 129 (225)
.+
T Consensus 92 ~~ 93 (104)
T 1wi8_A 92 DQ 93 (104)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 96
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-16 Score=115.89 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=70.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||+..+++++|+++|.+||+|..++| ...+|||||+|.+.++|++|+ .||+..|.+..|.|++|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3457999999999999999999999999999998 355899999999999999999 999999999999999998
Q ss_pred hHH
Q psy10308 129 DAE 131 (225)
Q Consensus 129 e~e 131 (225)
...
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 654
No 97
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=4.6e-15 Score=112.45 Aligned_cols=75 Identities=17% Similarity=0.261 Sum_probs=70.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-. .+|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 456799999999999999999999999999999843 589999999999999999999999999999999999975
No 98
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=8.9e-16 Score=119.86 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=70.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC-CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~-~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-.+ +|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 3457999999999999999999999999999999766 99999999999999999999999999999999999874
No 99
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=5.2e-16 Score=121.91 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=67.7
Q ss_pred cceEEec--CCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcccee-----cCceEEEeCCC
Q psy10308 56 GTWVLLK--NLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCIL-----GNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~--NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~L-----g~ttI~aeFAs 128 (225)
+..|+|+ ||...+++++|+++|.+||+|..++|..++|||||+|.+.+||++|+++||+.+| .+..|.|+||.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 4579994 5999999999999999999999999988999999999999999999999999887 56779999986
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 105 ~ 105 (114)
T 2cq2_A 105 K 105 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 100
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=6.2e-16 Score=115.08 Aligned_cols=76 Identities=13% Similarity=0.153 Sum_probs=69.6
Q ss_pred ccceEEecCCCCCc------chhHHHHHHHhhCCeeEEEec----CCCceEEEEeCCHHHHHHHHhhhccceecCc-eEE
Q psy10308 55 SGTWVLLKNLTPQI------DGSTLKTLCVQHGPLQNFHLY----LNHSLALAKYSTREEAIKAQGNLNNCILGNT-TIF 123 (225)
Q Consensus 55 ~~~wLvL~NLtpQi------de~tLr~Lc~qhGpV~tfhln----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t-tI~ 123 (225)
.++-|+|.||++.+ ++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+. .|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 34579999999999 579999999999999999984 5589999999999999999999999999998 999
Q ss_pred EeCCChH
Q psy10308 124 AEAPSDA 130 (225)
Q Consensus 124 aeFAse~ 130 (225)
|++|.+-
T Consensus 94 V~~a~~~ 100 (105)
T 2nlw_A 94 VNLFTDF 100 (105)
T ss_dssp EECSCCC
T ss_pred EEEcchH
Confidence 9999853
No 101
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.62 E-value=9.9e-16 Score=115.26 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=69.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 104 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVT 104 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcc
Confidence 34579999999999999999999999999999983 348999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 105 ~ 105 (108)
T 2jrs_A 105 E 105 (108)
T ss_dssp S
T ss_pred c
Confidence 5
No 102
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.62 E-value=1.4e-15 Score=117.47 Aligned_cols=74 Identities=18% Similarity=0.145 Sum_probs=69.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhC-CeeEEEec--CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHG-PLQNFHLY--LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhG-pV~tfhln--l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+|| +|..+.|. ..+|||||+|.+.++|++||+.||+.+|.+..|.|++|..
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 45699999999999999999999999 89999985 5799999999999999999999999999999999999863
No 103
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=1.1e-15 Score=119.95 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=69.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++| ...+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 3457999999999999999999999999999998 3457999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 118 ~ 118 (156)
T 1h2v_Z 118 G 118 (156)
T ss_dssp C
T ss_pred C
Confidence 4
No 104
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=9e-16 Score=112.33 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=69.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHh-hCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccce-ecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQ-HGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCI-LGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~q-hGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~-Lg~ttI~aeFAs 128 (225)
..-|+|.||++.+++++|+++|.+ ||+|..++|-. .+|||||+|.+.++|++|++.||+.. |.+..|.|++|.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 456999999999999999999999 99999999843 59999999999999999999999999 999999999996
Q ss_pred hH
Q psy10308 129 DA 130 (225)
Q Consensus 129 e~ 130 (225)
..
T Consensus 89 ~~ 90 (104)
T 2dhg_A 89 PK 90 (104)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 105
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1.7e-15 Score=119.85 Aligned_cols=76 Identities=20% Similarity=0.219 Sum_probs=68.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCce-EEEEeCCHHHHHHHHhhhccceecC--ceEEEeCCChHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSL-ALAKYSTREEAIKAQGNLNNCILGN--TTIFAEAPSDAE 131 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~-AlVrYstkeEA~kAi~aLn~c~Lg~--ttI~aeFAse~e 131 (225)
...|+|.||+..+++++|+++|.+||+|+.++|....|+ |||+|.+.++|++|+++|||+.|.+ .+|.|+||...+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 345779999999999999999999999999998655696 9999999999999999999999987 589999998654
No 106
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=9.5e-16 Score=111.89 Aligned_cols=73 Identities=10% Similarity=0.173 Sum_probs=68.5
Q ss_pred ccceEEecCCCC-CcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTP-QIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtp-Qide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
.+.-|+|.||++ .+++++|+++|.+||+|..+++ .+|||||+|.+.++|++|++.||+..+.+..|.|++|..
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 355799999998 9999999999999999999998 499999999999999999999999999999999999864
No 107
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1e-15 Score=119.17 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=69.5
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4569999999999999999999999999999983 5589999999999999999999999999999999999975
No 108
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=8.4e-16 Score=106.44 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=64.7
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
-|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|++.+| ..+.+..|.|++|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 48999999999999999999999999999983 348999999999999999999999 9999999999987
No 109
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.61 E-value=1.4e-15 Score=118.80 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=69.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
....|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 34579999999999999999999999999999983 358999999999999999999999999999999999987
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 149 ~ 149 (158)
T 2kn4_A 149 Y 149 (158)
T ss_dssp C
T ss_pred C
Confidence 4
No 110
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.5e-15 Score=110.92 Aligned_cols=75 Identities=16% Similarity=0.121 Sum_probs=66.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe--cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL--YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl--nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|.-+.. ...+|||||+|.+.++|++|++.||++.|.+..|.|++|.+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 90 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGP 90 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCC
Confidence 3567999999999999999999999999832222 24599999999999999999999999999999999999976
No 111
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=4.8e-16 Score=118.48 Aligned_cols=83 Identities=11% Similarity=0.120 Sum_probs=73.5
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeE-EEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQN-FHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~t-fhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|.. +.+ +..+|||||+|.+.++|++|++ ||+..|.+..|.|++|++
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 457999999999999999999999999976 333 3559999999999999999999 999999999999999999
Q ss_pred HHHHHHHHhh
Q psy10308 130 AEVQSLLAHL 139 (225)
Q Consensus 130 ~ev~~~~~~~ 139 (225)
.|+...++..
T Consensus 104 ~~~~~~~~~~ 113 (124)
T 1wel_A 104 KGMLEKIDMI 113 (124)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9986665544
No 112
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.60 E-value=6.1e-15 Score=104.23 Aligned_cols=71 Identities=13% Similarity=0.275 Sum_probs=67.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhh----C-------CeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQH----G-------PLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qh----G-------pV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
...-|+|.||++.+++++|+++|.+| | +|..+++..++|||||+|.+.++|++|+ .||+..|.+..|.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 45679999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred EeC
Q psy10308 124 AEA 126 (225)
Q Consensus 124 aeF 126 (225)
|+-
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 874
No 113
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=4.7e-16 Score=121.38 Aligned_cols=75 Identities=20% Similarity=0.235 Sum_probs=69.5
Q ss_pred ccceEEecCCCCC-cchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcc--ceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQ-IDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN--CILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQ-ide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~ttI~aeFAse 129 (225)
.+.-|+|.||++. +++++|+++|.+||+|..+.|-..+|||||+|.+.++|++|++.||+ ..|.+++|.|+||..
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 3457999999998 99999999999999999999999999999999999999999999975 679999999999863
No 114
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.60 E-value=5.6e-16 Score=110.78 Aligned_cols=74 Identities=18% Similarity=0.191 Sum_probs=66.2
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
.-|+|.||++.+++++|+++|.+||+|..+++- ..+|||||+|.+.+ |++|++.||+..+.+..|.|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 358999999999999999999999999999983 44899999999999 99999999999999999999999875
Q ss_pred H
Q psy10308 131 E 131 (225)
Q Consensus 131 e 131 (225)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 115
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.2e-15 Score=109.14 Aligned_cols=73 Identities=8% Similarity=0.160 Sum_probs=67.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+|| |..++|- ..+|||||+|.+.++|++|+ .||+..|.+..|.|++|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEec
Confidence 355799999999999999999999997 9999983 34899999999999999999 899999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 92 ~ 92 (103)
T 2dng_A 92 G 92 (103)
T ss_dssp C
T ss_pred C
Confidence 5
No 116
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.60 E-value=1.3e-15 Score=122.25 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=69.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-CCCce-EEEEeCCHHHHHHHHhhhccceecC--ceEEEeCCChHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-LNHSL-ALAKYSTREEAIKAQGNLNNCILGN--TTIFAEAPSDAE 131 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-l~~G~-AlVrYstkeEA~kAi~aLn~c~Lg~--ttI~aeFAse~e 131 (225)
--.|+|.||...+++++|+++|.+||+|..+++. ..+|+ |||+|.+.++|++|+++|||..|.+ .+|.|+||...+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 4568899999999999999999999999999984 45788 9999999999999999999999988 889999998654
No 117
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=7.1e-15 Score=111.91 Aligned_cols=84 Identities=19% Similarity=0.287 Sum_probs=75.5
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC---
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP--- 127 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA--- 127 (225)
.-|+|.||++.+++++|+++|.+||+|..+++-.+ +|+|||+|.+.++|++|++.||+..+.+..|.|+++
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 46999999999999999999999999999998544 499999999999999999999999999999998876
Q ss_pred ------------------ChHHHHHHHHhhc
Q psy10308 128 ------------------SDAEVQSLLAHLS 140 (225)
Q Consensus 128 ------------------se~ev~~~~~~~~ 140 (225)
+|+||..+|.+-+
T Consensus 83 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G 113 (167)
T 1fxl_A 83 SASIRDANLYVSGLPKTMTQKELEQLFSQYG 113 (167)
T ss_dssp CGGGTTCEEEEESCCTTCCHHHHHHHHGGGS
T ss_pred cccCCCCcEEECCCCCcCCHHHHHHHHHhcC
Confidence 4677888887654
No 118
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.3e-15 Score=113.22 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=68.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCe----eEEEe--cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPL----QNFHL--YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV----~tfhl--nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+| +.+++ ...+|||||+|.+.++|++|++.||+..|.+..|.|+||..
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 4579999999999999999999999999 55554 46689999999999999999999999999999999999975
No 119
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=117.95 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=69.5
Q ss_pred cceEEecCCCCCcchhHHH----HHHHhhCCeeEEEec---CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLK----TLCVQHGPLQNFHLY---LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr----~Lc~qhGpV~tfhln---l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
..-|+|.||++.+++++|+ ++|.+||+|+.+.+. ..+|||||.|.+.++|++|++.||+..|.+..|.|+||.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 4469999999999999876 799999999999983 569999999999999999999999999999999999998
Q ss_pred h-HHH
Q psy10308 129 D-AEV 132 (225)
Q Consensus 129 e-~ev 132 (225)
. .++
T Consensus 109 ~~~~~ 113 (127)
T 2a3j_A 109 TPQSQ 113 (127)
T ss_dssp CCCHH
T ss_pred Ccchh
Confidence 3 444
No 120
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=2.7e-15 Score=113.70 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=66.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCce-----EEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTT-----IFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt-----I~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|+.++|..+ |||||+|.+.++|++||+.||+.+|.+.. |.|+.+..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 3456999999999999999999999999999999766 99999999999999999999999999988 67766654
No 121
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=111.76 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=68.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++. |+..|.+..|.|++|..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 4579999999999999999999999999999983 3489999999999999999999 99999999999999974
No 122
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=1.9e-15 Score=114.06 Aligned_cols=73 Identities=12% Similarity=0.159 Sum_probs=67.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||+..+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|+ .||+..|.+..|.|++|..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4569999999999999999999999999999983 34899999999999999999 8999999999999999873
No 123
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=118.56 Aligned_cols=84 Identities=21% Similarity=0.213 Sum_probs=76.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCe----eEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPL----QNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA 126 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV----~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF 126 (225)
..-|+|+||+..+++++|+++|.+||+| ..++| +..+|||||+|.+.++|++|++. |+..|+++.|.|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 4579999999999999999999999986 56776 24589999999999999999997 99999999999999
Q ss_pred CChHHHHHHHHhhc
Q psy10308 127 PSDAEVQSLLAHLS 140 (225)
Q Consensus 127 Ase~ev~~~~~~~~ 140 (225)
|+..|+++.++...
T Consensus 102 a~~~e~~~~~~~~~ 115 (123)
T 2dha_A 102 STAAEVQQVLNRFS 115 (123)
T ss_dssp ECHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhcc
Confidence 99999999998754
No 124
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.59 E-value=2e-15 Score=104.34 Aligned_cols=68 Identities=10% Similarity=0.209 Sum_probs=63.6
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
|+|.||++.+++++|+++|.+||+|..+++ +..+|+|||+|.+.++|++|++. ++..+.+..|.|++|
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 789999999999999999999999999998 34589999999999999999996 889999999999876
No 125
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.59 E-value=2.6e-15 Score=127.34 Aligned_cols=83 Identities=12% Similarity=0.084 Sum_probs=76.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhC--CeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHG--PLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhG--pV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
...|+|.||++.+++++|+++|.+|| +|+.++|- ..+|||||.|.+.++|++||+.||+.+|.+..|.|++|
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 45799999999999999999999999 99999983 34899999999999999999999999999999999999
Q ss_pred ChHHHHHHHHh
Q psy10308 128 SDAEVQSLLAH 138 (225)
Q Consensus 128 se~ev~~~~~~ 138 (225)
....+.++=.+
T Consensus 148 ~~~~~~~~~~~ 158 (229)
T 3q2s_C 148 NKQFLSQFEMQ 158 (229)
T ss_dssp CHHHHHHHHHH
T ss_pred CCCccchhhhh
Confidence 99998887443
No 126
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=1.9e-15 Score=125.81 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=69.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec--CCCceEEEEeCCHHHHHHHHhhhccceecC--ceEEEeCCChHH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY--LNHSLALAKYSTREEAIKAQGNLNNCILGN--TTIFAEAPSDAE 131 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln--l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~--ttI~aeFAse~e 131 (225)
...|+|.||.+.+++++|+++|.+||+|+.++|. ..+|+|||+|.+.++|++|+++|||..|.+ .+|.|+||...+
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4468899999999999999999999999999984 347899999999999999999999999965 899999998653
No 127
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=8.2e-16 Score=108.88 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=67.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- ..+|||||+|.+.++|++|++.||+..|.++.|.++.++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 34579999999999999999999999999999984 348999999999999999999999999999999887765
No 128
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.6e-15 Score=111.42 Aligned_cols=75 Identities=11% Similarity=0.083 Sum_probs=68.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++. |+..|.+..|.|++|.
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~ 93 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCT 93 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEcc
Confidence 34579999999999999999999999999999983 3479999999999999999999 9999999999999997
Q ss_pred hH
Q psy10308 129 DA 130 (225)
Q Consensus 129 e~ 130 (225)
..
T Consensus 94 ~~ 95 (105)
T 2dh8_A 94 PR 95 (105)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 129
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=3.5e-15 Score=118.93 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=69.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+.+|.+||+|..++|..+ +|||||.|.+.++|++||+.||+..|.+..|.|+||..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 456999999999999999999999999999999543 79999999999999999999999999999999999864
No 130
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=1.5e-14 Score=121.33 Aligned_cols=73 Identities=16% Similarity=0.212 Sum_probs=68.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCC-ceEEEEeCCHHHHHHHHhhhccceec-CceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNH-SLALAKYSTREEAIKAQGNLNNCILG-NTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~-G~AlVrYstkeEA~kAi~aLn~c~Lg-~ttI~aeFAs 128 (225)
..-|+|.||++.+++++|+++|.+||+|..++|..++ |+|||+|.+.++|++|++.||+..|. ++.|.|+||.
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 4569999999999999999999999999999997665 99999999999999999999999999 9999999986
No 131
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.58 E-value=3e-15 Score=105.92 Aligned_cols=68 Identities=13% Similarity=0.180 Sum_probs=62.3
Q ss_pred ceEEecCCCCCc------chhHHHHHHHhhCCeeEEEec----CCCceEEEEeCCHHHHHHHHhhhccceecCc-eEEE
Q psy10308 57 TWVLLKNLTPQI------DGSTLKTLCVQHGPLQNFHLY----LNHSLALAKYSTREEAIKAQGNLNNCILGNT-TIFA 124 (225)
Q Consensus 57 ~wLvL~NLtpQi------de~tLr~Lc~qhGpV~tfhln----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t-tI~a 124 (225)
+-|+|.||+..+ ++++|+++|.+||+|..+++. ..+|||||+|.+.++|++|++.||+..|.+. .|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 358999999999 569999999999999999984 4589999999999999999999999999999 8765
No 132
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.58 E-value=3.1e-15 Score=115.45 Aligned_cols=73 Identities=22% Similarity=0.389 Sum_probs=68.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
..-|+|.||++.+++++|+++|.+||+|..+++..+ +|+|||+|.+.++|++|++.||+..+.++.|.|++|+
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 456999999999999999999999999999998433 7999999999999999999999999999999999986
No 133
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=113.53 Aligned_cols=78 Identities=21% Similarity=0.175 Sum_probs=70.9
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeE-EEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQN-FHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~t-fhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||+..+++++|+++|.+||+|.. ++| +..+|||||+|.+.++|++|++. |+..|+++.|.|..++.
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 456999999999999999999999999997 777 35589999999999999999998 99999999999999998
Q ss_pred HHHHH
Q psy10308 130 AEVQS 134 (225)
Q Consensus 130 ~ev~~ 134 (225)
.|+++
T Consensus 94 ~~~~~ 98 (104)
T 1wg5_A 94 AEVRT 98 (104)
T ss_dssp TTSCC
T ss_pred HHHHH
Confidence 87643
No 134
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=4.5e-15 Score=112.92 Aligned_cols=75 Identities=11% Similarity=0.183 Sum_probs=69.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
....|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|++.||+..+.+..|.|+||+
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 34579999999999999999999999999999984 348999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 166 ~ 166 (166)
T 3md3_A 166 K 166 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=5.2e-15 Score=105.14 Aligned_cols=72 Identities=10% Similarity=0.125 Sum_probs=65.3
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
...-|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|++. ++..|.+..|.|++|
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDPKKA 87 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEEEeC
Confidence 34579999999999999999999999999999983 3489999999999999999965 778899999999976
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.58 E-value=4.3e-15 Score=121.74 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=69.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
...|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|...
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 3479999999999999999999999999999983 45899999999999999999999999999999999999854
No 137
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.58 E-value=1.7e-15 Score=109.47 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=68.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..+.. ...+|||||+|.+.++|++|++.||+..|.+..|.|++|.+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4567999999999999999999999999988832 46699999999999999999999999999999999999965
No 138
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.58 E-value=6.6e-15 Score=111.98 Aligned_cols=70 Identities=23% Similarity=0.268 Sum_probs=65.2
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
-|+|.||++.+++++|+++|.+||+|..+++ +..+|+|||+|.+.++|++|++.||+..+.+..|.|+++
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 3899999999999999999999999999998 345799999999999999999999999999999998877
No 139
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=7e-15 Score=106.61 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=67.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCc-eEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS-LALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G-~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
.+.-|+|.||++.+++++|+++|.+||+|..+.+....| ||||+|.+.++|++|++ ||+..|.+..|.|++|.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 345799999999999999999999999999986654433 99999999999999999 9999999999999988753
No 140
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-15 Score=111.02 Aligned_cols=75 Identities=13% Similarity=0.260 Sum_probs=68.1
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhcccee--------cCce
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCIL--------GNTT 121 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~L--------g~tt 121 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..| .+..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~ 103 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEP 103 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCc
Confidence 34579999999999999999999999999999984 3489999999999999999999999988 5778
Q ss_pred EEEeCCCh
Q psy10308 122 IFAEAPSD 129 (225)
Q Consensus 122 I~aeFAse 129 (225)
|.|+||..
T Consensus 104 l~v~~a~p 111 (114)
T 1x5o_A 104 LLCKFSGP 111 (114)
T ss_dssp BEEEECCC
T ss_pred eeEEccCC
Confidence 99999973
No 141
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=3.2e-15 Score=116.92 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=69.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~ 125 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 125 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 34569999999999999999999999999999983 458999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 126 ~ 126 (135)
T 2lea_A 126 Y 126 (135)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=7e-15 Score=107.69 Aligned_cols=73 Identities=10% Similarity=0.166 Sum_probs=66.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++. +..|.+..|.|++|.+
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECCCT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEecCC
Confidence 4569999999999999999999999999999983 3489999999999999999994 6789999999999986
Q ss_pred H
Q psy10308 130 A 130 (225)
Q Consensus 130 ~ 130 (225)
.
T Consensus 93 ~ 93 (103)
T 2cqg_A 93 K 93 (103)
T ss_dssp T
T ss_pred C
Confidence 3
No 143
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=4e-15 Score=112.28 Aligned_cols=75 Identities=13% Similarity=0.096 Sum_probs=69.1
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||.|.+.++|++|++ +|+..|.+..|.|+++.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 34569999999999999999999999999999983 468999999999999999999 899999999999998876
Q ss_pred H
Q psy10308 130 A 130 (225)
Q Consensus 130 ~ 130 (225)
-
T Consensus 89 ~ 89 (103)
T 1s79_A 89 Y 89 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 144
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=9.9e-15 Score=111.06 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=67.2
Q ss_pred cceEEecCCCC--Cc---chhHHHHHHHhhCCeeEEEec-------CCCceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 56 GTWVLLKNLTP--QI---DGSTLKTLCVQHGPLQNFHLY-------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 56 ~~wLvL~NLtp--Qi---de~tLr~Lc~qhGpV~tfhln-------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
+.-|+|+|+-. ++ .+++|+++|.+||+|..++|. ..+|+|||+|.+.++|++|+++|||..+.++.|.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 45699999963 22 479999999999999999984 2489999999999999999999999999999999
Q ss_pred EeCCChHH
Q psy10308 124 AEAPSDAE 131 (225)
Q Consensus 124 aeFAse~e 131 (225)
|+||.++.
T Consensus 88 v~~a~~~~ 95 (105)
T 2pe8_A 88 ACFYNLDK 95 (105)
T ss_dssp EEECCHHH
T ss_pred EEEcCHHH
Confidence 99999854
No 145
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.56 E-value=1.1e-14 Score=109.48 Aligned_cols=73 Identities=14% Similarity=0.144 Sum_probs=66.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.++ ..|.+..|.|++|..
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAFP 103 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEEEEEEEccC
Confidence 4469999999999999999999999999999983 448999999999999999999975 999999999999864
No 146
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=6.3e-15 Score=105.76 Aligned_cols=72 Identities=13% Similarity=0.074 Sum_probs=66.9
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+| +|..++|- ..+|+|||+|.+.++|++|++ ||+..|.++.|.|++|..
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESS
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCc
Confidence 4569999999999999999999999 99999983 348999999999999999999 999999999999999875
No 147
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.55 E-value=6.7e-15 Score=113.63 Aligned_cols=74 Identities=14% Similarity=0.180 Sum_probs=69.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
...-|+|.|| .+++++|+++|.+||+|..+.+...+|||||+|.+.++|++|++.||+..|.+..|.|++|...
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3457999996 6999999999999999999999999999999999999999999999999999999999999853
No 148
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=1e-14 Score=121.12 Aligned_cols=75 Identities=9% Similarity=0.124 Sum_probs=69.5
Q ss_pred cceEEecCCC-CCcchhHHHHHHHhhCCeeEEEecC-CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLT-PQIDGSTLKTLCVQHGPLQNFHLYL-NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLt-pQide~tLr~Lc~qhGpV~tfhlnl-~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
+.-|+|.||. +.+++++|++||.+||+|+.++|-. .+|+|||+|.+.++|++||+.||+..|.+..|.|++|...
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 3469999999 7999999999999999999999854 4899999999999999999999999999999999999754
No 149
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.4e-14 Score=107.79 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=65.6
Q ss_pred ccceEEecCCCCCcc-----------hhHHHHHHHhhCCeeEEEec--CCCceEEEEeCCHHHHHHHHhhhccceecCce
Q psy10308 55 SGTWVLLKNLTPQID-----------GSTLKTLCVQHGPLQNFHLY--LNHSLALAKYSTREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 55 ~~~wLvL~NLtpQid-----------e~tLr~Lc~qhGpV~tfhln--l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt 121 (225)
.+.-|+|+||-...+ +++|+++|.+||+|..+.|. ..+|+|||+|.+.++|++|++.||+..+.++.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 345699999944322 58999999999999999883 45899999999999999999999999999999
Q ss_pred EEEeCCCh
Q psy10308 122 IFAEAPSD 129 (225)
Q Consensus 122 I~aeFAse 129 (225)
|.|+||.+
T Consensus 94 l~v~~a~~ 101 (112)
T 2dit_A 94 ITAQAWDG 101 (112)
T ss_dssp CEEEECCS
T ss_pred EEEEEeCC
Confidence 99999975
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.55 E-value=8.7e-15 Score=116.74 Aligned_cols=73 Identities=11% Similarity=0.222 Sum_probs=68.7
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
.-|+|.||+..+++++|+++|.+||+|..++|-.+ +|+|||+|.+.++|++|++.||+..|++..|.|+||..
T Consensus 126 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 126 NRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred cEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 57999999999999999999999999999998443 89999999999999999999999999999999999874
No 151
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=8.7e-15 Score=119.81 Aligned_cols=76 Identities=17% Similarity=0.247 Sum_probs=70.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..++|. ..+|||||+|.+.++|++|++.||++.|.+..|.|++|..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 35679999999999999999999999999999984 4589999999999999999999999999999999999976
Q ss_pred H
Q psy10308 130 A 130 (225)
Q Consensus 130 ~ 130 (225)
.
T Consensus 167 ~ 167 (177)
T 2f3j_A 167 Q 167 (177)
T ss_dssp G
T ss_pred C
Confidence 4
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.55 E-value=2.6e-14 Score=114.00 Aligned_cols=73 Identities=21% Similarity=0.362 Sum_probs=66.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
+.-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..+.+..|.|+++.
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 4579999999999999999999999999999983 468999999999999999999999999999999987653
No 153
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.55 E-value=1.6e-14 Score=109.66 Aligned_cols=77 Identities=10% Similarity=0.133 Sum_probs=67.1
Q ss_pred cceEEecCCCCC--cc--------hhHHHHHHHhhCCeeEEEecC--------CCceEEEEeCCHHHHHHHHhhhcccee
Q psy10308 56 GTWVLLKNLTPQ--ID--------GSTLKTLCVQHGPLQNFHLYL--------NHSLALAKYSTREEAIKAQGNLNNCIL 117 (225)
Q Consensus 56 ~~wLvL~NLtpQ--id--------e~tLr~Lc~qhGpV~tfhlnl--------~~G~AlVrYstkeEA~kAi~aLn~c~L 117 (225)
+.-|+|+|+-.. +. +++|+++|.+||+|..++|.. .+|+|||+|.+.++|++|+++|||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 456899998443 32 269999999999999999942 479999999999999999999999999
Q ss_pred cCceEEEeCCChHHH
Q psy10308 118 GNTTIFAEAPSDAEV 132 (225)
Q Consensus 118 g~ttI~aeFAse~ev 132 (225)
.++.|.|+|++++.-
T Consensus 85 ~GR~i~v~~~~~~~f 99 (105)
T 3v4m_A 85 ANRVVVTKYCDPDSY 99 (105)
T ss_dssp TTEECEEEEECHHHH
T ss_pred CCCEEEEEEeCHHHH
Confidence 999999999998754
No 154
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.55 E-value=4.2e-15 Score=109.42 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=66.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
..-|+|.||+..+++++|+++|.+|| |..++|-. .+|||||+|.+.++|++|+ .||+..|.+..|.|++|.
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 44699999999999999999999999 99999843 3799999999999999999 999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 97 ~ 97 (100)
T 2j76_E 97 Q 97 (100)
T ss_dssp C
T ss_pred C
Confidence 5
No 155
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.54 E-value=1.3e-14 Score=111.56 Aligned_cols=74 Identities=8% Similarity=0.195 Sum_probs=66.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceec---CceEEEeC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILG---NTTIFAEA 126 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg---~ttI~aeF 126 (225)
...-|+|.||++.+++++|+++|.+||+|..+++.. .+|+|||+|.+.++|++|++.||+..+. ++.|.|+|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 445799999999999999999999999999999844 3899999999999999999999997665 38899999
Q ss_pred CC
Q psy10308 127 PS 128 (225)
Q Consensus 127 As 128 (225)
|+
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 156
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.54 E-value=2.4e-14 Score=120.90 Aligned_cols=88 Identities=15% Similarity=0.235 Sum_probs=81.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC-------
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP------- 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA------- 127 (225)
...-|+|.||++.+++++|+++|.+||+|..+++..++|||||+|.+.++|++|++.||+..+.+..|.|+++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~l~ 100 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHGAALT 100 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCSSEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccCCccc
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred --------ChHHHHHHHHhhccc
Q psy10308 128 --------SDAEVQSLLAHLSAT 142 (225)
Q Consensus 128 --------se~ev~~~~~~~~~~ 142 (225)
+++||..+|.+.+..
T Consensus 101 v~nl~~~~t~~~l~~~F~~~G~i 123 (261)
T 3sde_A 101 VKNLSPVVSNELLEQAFSQFGPV 123 (261)
T ss_dssp EESCCTTCCHHHHHHHHGGGSCE
T ss_pred ccCCCCCCCHHHHHHHHHhcCCe
Confidence 589999999886543
No 157
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-15 Score=114.88 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=67.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeE--EEe------cCCCceEEEEeCCHHHHHHHHhhhccc----eecCceE
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQN--FHL------YLNHSLALAKYSTREEAIKAQGNLNNC----ILGNTTI 122 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~t--fhl------nl~~G~AlVrYstkeEA~kAi~aLn~c----~Lg~ttI 122 (225)
...-|+|.||++.+++++|+++|.+||+|.. ++| +..+|||||+|.+. +|++|++.||+. .|.++.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 3457999999999999999999999999966 777 34589999999999 999999999999 9999999
Q ss_pred EEeCCCh
Q psy10308 123 FAEAPSD 129 (225)
Q Consensus 123 ~aeFAse 129 (225)
.|++|..
T Consensus 101 ~V~~a~~ 107 (131)
T 2m2b_A 101 NVEFAKG 107 (131)
T ss_dssp CCEECCC
T ss_pred EEEECCC
Confidence 9999986
No 158
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.54 E-value=6e-14 Score=108.19 Aligned_cols=84 Identities=15% Similarity=0.340 Sum_probs=76.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhh----C-------CeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEE
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQH----G-------PLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFA 124 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qh----G-------pV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~a 124 (225)
+.-|+|.||++.+++++|+++|.+| | +|..+++..++|+|||+|.+.++|++|+ .||+..+.+..|.|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeee
Confidence 4579999999999999999999999 7 9999999999999999999999999999 89999999999999
Q ss_pred eCCC---------------------hHHHHHHHHhhc
Q psy10308 125 EAPS---------------------DAEVQSLLAHLS 140 (225)
Q Consensus 125 eFAs---------------------e~ev~~~~~~~~ 140 (225)
+++. |+|+..+|.+-+
T Consensus 83 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G 119 (172)
T 2g4b_A 83 RRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFG 119 (172)
T ss_dssp ECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTS
T ss_pred cCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcC
Confidence 8764 667777777654
No 159
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.54 E-value=4.4e-14 Score=111.25 Aligned_cols=74 Identities=14% Similarity=0.302 Sum_probs=69.0
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhh----C-------CeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQH----G-------PLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qh----G-------pV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
.+.-|+|.||++.+++++|+++|.+| | +|..+++..++|||||+|.+.++|++|+ .||+..|.+..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 35579999999999999999999999 6 8999999999999999999999999999 8999999999999
Q ss_pred EeCCCh
Q psy10308 124 AEAPSD 129 (225)
Q Consensus 124 aeFAse 129 (225)
|+++.+
T Consensus 82 v~~~~~ 87 (198)
T 2yh0_A 82 IRRPHD 87 (198)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999864
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.54 E-value=1.9e-14 Score=110.30 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=66.9
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
..-|+|.||++.+++++|+++|.+||+|..+++-. .+|+|||+|.+.++|++|++.||+..+.+..|.|+++.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 34699999999999999999999999999999843 46999999999999999999999999999999998754
No 161
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.54 E-value=3.3e-14 Score=116.44 Aligned_cols=86 Identities=10% Similarity=0.177 Sum_probs=76.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC--
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP-- 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA-- 127 (225)
+.-|+|.||++.++|++|+++|.+||+|..++| +.++|||||+|.+.++|++|++.||+..+.+..|.+.++
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 457999999999999999999999999999998 345899999999999999999999999999998887765
Q ss_pred ---------------------ChHHHHHHHHhhcc
Q psy10308 128 ---------------------SDAEVQSLLAHLSA 141 (225)
Q Consensus 128 ---------------------se~ev~~~~~~~~~ 141 (225)
+|+|+..+|.+-+.
T Consensus 95 ~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 129 (213)
T 4f02_A 95 DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGN 129 (213)
T ss_dssp CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred cccccccccccceECCcccccHHHHHHHHHhhcCC
Confidence 57788888877643
No 162
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.8e-14 Score=105.09 Aligned_cols=73 Identities=18% Similarity=0.153 Sum_probs=65.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeE-----EEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQN-----FHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~t-----fhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|.. -.....+|||||+|.+.++|++|++ ||+..|.+..|.|++|..
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 457999999999999999999999998876 1224679999999999999999999 999999999999999974
No 163
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-14 Score=109.54 Aligned_cols=75 Identities=11% Similarity=0.157 Sum_probs=69.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
..-|+|+||+..+++++|+++|.+| .|..++| +..+|+|||+|.+.++|++|+ .||+..|+++.|.|..|++.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4569999999999999999999999 8999998 345999999999999999999 69999999999999999987
Q ss_pred HH
Q psy10308 131 EV 132 (225)
Q Consensus 131 ev 132 (225)
|.
T Consensus 94 ~~ 95 (109)
T 2dnn_A 94 QW 95 (109)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 164
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.6e-14 Score=112.08 Aligned_cols=68 Identities=19% Similarity=0.274 Sum_probs=63.2
Q ss_pred eEEecCCCCCcchhH----HHHHHHhh-CCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 58 WVLLKNLTPQIDGST----LKTLCVQH-GPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 58 wLvL~NLtpQide~t----Lr~Lc~qh-GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
-|||.||+..+++++ |++||.+| |+|+.+. .|+|||+|.+.|+|++|+++|||.+|.++.|.|+||.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~ 83 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK 83 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence 389999999999988 66999999 5999993 49999999999999999999999999999999999984
No 165
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.5e-14 Score=104.30 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=65.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe---cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL---YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl---nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+|+.|.-+.- +..+|||||+|.+.++|++|++.||+..|.+..|.|++|..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKP 91 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 3456999999999999999999999976554442 24479999999999999999999999999999999999974
No 166
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=1.3e-14 Score=112.49 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=66.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEE--------Ee---cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEE
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF--------HL---YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFA 124 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tf--------hl---nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~a 124 (225)
+.-|+|.||++.+++++|+.+|.+||+|..+ ++ +..+|||||.|.+.++|++|+..||+..|.+..|.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4579999999999999999999999998763 22 467999999999999999999999999999999999
Q ss_pred eCCC
Q psy10308 125 EAPS 128 (225)
Q Consensus 125 eFAs 128 (225)
+||.
T Consensus 125 ~~a~ 128 (143)
T 3egn_A 125 QFAR 128 (143)
T ss_dssp EECC
T ss_pred EECC
Confidence 9995
No 167
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=1.9e-14 Score=113.34 Aligned_cols=75 Identities=23% Similarity=0.375 Sum_probs=69.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..+++..+ +|+|||+|.+.++|++|++.||+..|.+..|.|++|.
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 192 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 192 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 3457999999999999999999999999999998443 8999999999999999999999999999999999997
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
+
T Consensus 193 ~ 193 (198)
T 2yh0_A 193 V 193 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 168
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.51 E-value=3.3e-14 Score=108.20 Aligned_cols=72 Identities=18% Similarity=0.234 Sum_probs=66.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCce--EEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTT--IFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt--I~aeFA 127 (225)
...|+|.||++.+++++|+++|.+||+|..+++.. .+|+|||+|.+.++|++|++.||+..+.+.. |.|+||
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 34699999999999999999999999999999843 3799999999999999999999999999976 999887
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=3.2e-14 Score=109.03 Aligned_cols=72 Identities=25% Similarity=0.347 Sum_probs=66.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCC------CceEEEEeCCHHHHHHHHhhhccceecC--ceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN------HSLALAKYSTREEAIKAQGNLNNCILGN--TTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~------~G~AlVrYstkeEA~kAi~aLn~c~Lg~--ttI~aeFA 127 (225)
..-|+|.||++.+++++|+++|.+||+|..+++-.+ +|+|||+|.+.++|++|++.||+..+.+ ..|.|+||
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 456999999999999999999999999999998433 6999999999999999999999999977 88999987
No 170
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.26 E-value=1.3e-15 Score=114.30 Aligned_cols=76 Identities=12% Similarity=0.132 Sum_probs=69.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeE--------EEec------CCCceEEEEeCCHHHHHHHHhhhccceecCce
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQN--------FHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTT 121 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~t--------fhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt 121 (225)
..-|+|.||++.+++++|+++|.+||+|.. ++|. ..+|||||+|.+.++|++|++.||+..+.+..
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 456999999999999999999999999998 6663 34899999999999999999999999999999
Q ss_pred EEEeCCChHH
Q psy10308 122 IFAEAPSDAE 131 (225)
Q Consensus 122 I~aeFAse~e 131 (225)
|.|++|...+
T Consensus 87 l~V~~a~~~~ 96 (116)
T 2lcw_A 87 IKVSFATRRA 96 (116)
Confidence 9999998643
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.50 E-value=8.5e-14 Score=107.01 Aligned_cols=86 Identities=14% Similarity=0.261 Sum_probs=71.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec--------CCCceEEEEeCCHHHHHHHHhhhccceec---CceEEE
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY--------LNHSLALAKYSTREEAIKAQGNLNNCILG---NTTIFA 124 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln--------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg---~ttI~a 124 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++.||+..+. ...|.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 3469999999999999999999999999999983 56899999999999999999999996654 223444
Q ss_pred eC----------------------CChHHHHHHHHhhcc
Q psy10308 125 EA----------------------PSDAEVQSLLAHLSA 141 (225)
Q Consensus 125 eF----------------------Ase~ev~~~~~~~~~ 141 (225)
.. .+|+||..+|.+-+.
T Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~ 121 (175)
T 3nmr_A 83 KPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ 121 (175)
T ss_dssp EECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSC
T ss_pred ccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCC
Confidence 32 468889999987654
No 172
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.9e-14 Score=107.75 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=66.1
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||+..+++++|+++|.+||.| .++|- ..+|||||+|.+.++|++|++ +|+..|+++.|.|..++.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCC
Confidence 34579999999999999999999999955 88873 458999999999999999995 799999999999998875
Q ss_pred HH
Q psy10308 130 AE 131 (225)
Q Consensus 130 ~e 131 (225)
.+
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 173
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.49 E-value=4.6e-14 Score=108.40 Aligned_cols=73 Identities=8% Similarity=0.161 Sum_probs=67.4
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..+++- ..+|+|||+|.+.++|++|++ ||+..+.+..|.|++|..
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 3469999999999999999999999999999984 347999999999999999998 899999999999999974
No 174
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.49 E-value=5.4e-14 Score=109.72 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=66.8
Q ss_pred cceEEecCCCCC--cc---hhHHHHHHHhhCCeeEEEecC----------CCceEEEEeCCHHHHHHHHhhhccceecCc
Q psy10308 56 GTWVLLKNLTPQ--ID---GSTLKTLCVQHGPLQNFHLYL----------NHSLALAKYSTREEAIKAQGNLNNCILGNT 120 (225)
Q Consensus 56 ~~wLvL~NLtpQ--id---e~tLr~Lc~qhGpV~tfhlnl----------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t 120 (225)
+.-|+|+|+-.. ++ +++|++.|.+||+|..++|.. .+|++||+|.+.++|++|+++|||..+.++
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 456899998532 22 689999999999999999842 249999999999999999999999999999
Q ss_pred eEEEeCCChHHH
Q psy10308 121 TIFAEAPSDAEV 132 (225)
Q Consensus 121 tI~aeFAse~ev 132 (225)
.|.|+|+++++-
T Consensus 100 ~i~v~~~~~~~f 111 (118)
T 3ue2_A 100 KVVAEVYDQERF 111 (118)
T ss_dssp ECEEEEECHHHH
T ss_pred EEEEEEcChHhc
Confidence 999999998654
No 175
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.49 E-value=3.8e-14 Score=123.58 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=70.0
Q ss_pred ccceEEecCCCCCc---------chhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhcccee--------
Q psy10308 55 SGTWVLLKNLTPQI---------DGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCIL-------- 117 (225)
Q Consensus 55 ~~~wLvL~NLtpQi---------de~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~L-------- 117 (225)
...-|+|.||++.+ +|++|+++|.+||+|..++|-.++|+|||+|.++++|++|+++||+..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~ 212 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEW 212 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTG
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccc
Confidence 34579999999999 6999999999999999999988999999999999999999999999988
Q ss_pred ----cCceEEEeCCChH
Q psy10308 118 ----GNTTIFAEAPSDA 130 (225)
Q Consensus 118 ----g~ttI~aeFAse~ 130 (225)
.++.|.|++|.+.
T Consensus 213 ~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 213 DDRREGTGLLVKWANED 229 (240)
T ss_dssp GGGGGSCCCEEEECC--
T ss_pred cccCCCCEEEEEEccCC
Confidence 7889999999864
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.48 E-value=5e-14 Score=112.16 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=69.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhC-CeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceec-CceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHG-PLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILG-NTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhG-pV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg-~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+|| +|..+++ ..++|+|||+|.+.++|++|++.||+..++ +..|.|+||..
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 45699999999999999999999999 9999999 457999999999999999999999999999 99999999863
No 177
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.48 E-value=1.4e-13 Score=115.52 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=79.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC--------
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP-------- 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA-------- 127 (225)
+.-|+|+||++.+++++|+++|.+|| |+.+.+...+|+|||+|.+.++|++|++.||+..+.+..|.|+++
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~~~l~v 100 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTDALLCV 100 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCSCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCCCEEEE
Confidence 45799999999999999999999999 999999999999999999999999999999999999999988875
Q ss_pred -------ChHHHHHHHHhhcc
Q psy10308 128 -------SDAEVQSLLAHLSA 141 (225)
Q Consensus 128 -------se~ev~~~~~~~~~ 141 (225)
+|+||..+|.+.+.
T Consensus 101 ~nlp~~~t~~~l~~~f~~~G~ 121 (284)
T 3smz_A 101 ANLPPSLTQQQFEELVRPFGS 121 (284)
T ss_dssp ESCCTTCCHHHHHHHHGGGSC
T ss_pred cCCCCcCCHHHHHHHHHhcCC
Confidence 68899999998654
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.47 E-value=4.9e-14 Score=109.63 Aligned_cols=75 Identities=13% Similarity=0.125 Sum_probs=68.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|..+.. +..+|+|||+|.+.++|++|++.||+..|.++.|.|+||.+
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCC
Confidence 4567999999999999999999999999988822 46799999999999999999999999999999999999975
No 179
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=3.8e-14 Score=112.06 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=69.2
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCee--EEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ--NFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~--tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
....|+|.||++.+++++|+++|.+| .|+ .++|- ..+|||||+|.+.++|++|++. ++..|+++.|.|..|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEEC
Confidence 34569999999999999999999999 677 88873 4599999999999999999995 779999999999999
Q ss_pred ChHHHH
Q psy10308 128 SDAEVQ 133 (225)
Q Consensus 128 se~ev~ 133 (225)
+..|++
T Consensus 119 ~~~e~~ 124 (126)
T 2hgm_A 119 SQEEVR 124 (126)
T ss_dssp CHHHHC
T ss_pred CHHHhh
Confidence 999874
No 180
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.47 E-value=1.7e-13 Score=106.55 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=70.3
Q ss_pred cceEEecCCCCCcc----------hhHHHHHHHhhCCeeEEEecC--CCceEEEEeCCHHHHHHHHhhhccceecCceEE
Q psy10308 56 GTWVLLKNLTPQID----------GSTLKTLCVQHGPLQNFHLYL--NHSLALAKYSTREEAIKAQGNLNNCILGNTTIF 123 (225)
Q Consensus 56 ~~wLvL~NLtpQid----------e~tLr~Lc~qhGpV~tfhlnl--~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ 123 (225)
+.-|+|+|+-...+ +++|+++|.+||+|..++|.. .+|+|||+|.+.++|++|+++|||..+.++.|.
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~ 86 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMIT 86 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44689999866433 368999999999999999954 379999999999999999999999999999999
Q ss_pred EeCCChHHHHHHHH
Q psy10308 124 AEAPSDAEVQSLLA 137 (225)
Q Consensus 124 aeFAse~ev~~~~~ 137 (225)
|+|+.+++-.+.|.
T Consensus 87 v~~~~~~~y~~~fp 100 (114)
T 3s6e_A 87 AAYVPLPTYHNLFP 100 (114)
T ss_dssp EEEECHHHHHHHCG
T ss_pred EEEEcHHHHHHhCc
Confidence 99999886655443
No 181
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.4e-13 Score=113.93 Aligned_cols=76 Identities=22% Similarity=0.271 Sum_probs=70.5
Q ss_pred ccceEEecCCCC-CcchhHHHHHHHhhCCeeEEEecCC-CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 55 SGTWVLLKNLTP-QIDGSTLKTLCVQHGPLQNFHLYLN-HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 55 ~~~wLvL~NLtp-Qide~tLr~Lc~qhGpV~tfhlnl~-~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
.+.-|+|.||++ .+++++|+++|.+||+|..++|-.+ +|||||+|.+.++|++|++.||+..+.+..|.|++|...
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 345799999999 9999999999999999999999666 699999999999999999999999999999999999743
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.2e-13 Score=114.32 Aligned_cols=74 Identities=26% Similarity=0.387 Sum_probs=69.6
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhC-CeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceec-CceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHG-PLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILG-NTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhG-pV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg-~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+|| +|..+++ ..++|+|||+|.+.++|++|++.||+..+. +..|.|+||..
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 45699999999999999999999999 9999999 458999999999999999999999999999 99999999874
No 183
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.47 E-value=1.1e-13 Score=108.70 Aligned_cols=75 Identities=7% Similarity=0.112 Sum_probs=66.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++. ++..|.+..|.|++|..
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 3579999999999999999999999999999983 3489999999999999999987 78999999999999986
Q ss_pred HH
Q psy10308 130 AE 131 (225)
Q Consensus 130 ~e 131 (225)
.+
T Consensus 183 k~ 184 (196)
T 1l3k_A 183 KQ 184 (196)
T ss_dssp --
T ss_pred hh
Confidence 54
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=9.5e-14 Score=110.55 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=69.5
Q ss_pred ceEEecCCCC-CcchhHHHHHHHhhCCeeEEEecCC-CceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 57 TWVLLKNLTP-QIDGSTLKTLCVQHGPLQNFHLYLN-HSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 57 ~wLvL~NLtp-Qide~tLr~Lc~qhGpV~tfhlnl~-~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
.-|+|.||++ .+++++|+++|.+||+|..+++-.+ +|+|||+|.+.++|++|++.||+..+.+..|.|+++...
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 4699999999 9999999999999999999998655 799999999999999999999999999999999998854
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=1.3e-13 Score=115.66 Aligned_cols=76 Identities=13% Similarity=0.179 Sum_probs=70.0
Q ss_pred ccceEEecCCCCCcchhHHH----HHHHhhCCeeEEEec---CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLK----TLCVQHGPLQNFHLY---LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr----~Lc~qhGpV~tfhln---l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
.+.-|+|.||++.+++++|+ ++|.+||+|..+++. ..+|||||+|.+.++|++|++.||+..|.++.|.|++|
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 87 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYA 87 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEe
Confidence 45679999999999999977 999999999999973 57899999999999999999999999999999999999
Q ss_pred ChH
Q psy10308 128 SDA 130 (225)
Q Consensus 128 se~ 130 (225)
...
T Consensus 88 ~~~ 90 (282)
T 3pgw_A 88 KTD 90 (282)
T ss_pred ccC
Confidence 753
No 186
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.46 E-value=4.6e-14 Score=103.12 Aligned_cols=72 Identities=6% Similarity=0.157 Sum_probs=66.0
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|-. .+|||||+|.+.++|++|++ |+..|.+..|.|..|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 345699999999999999999999999999999843 58999999999999999999 8899999999988886
No 187
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.46 E-value=2e-13 Score=107.31 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=66.7
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
...-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||+|.+.++|++|++. ++..+.+..|.|+++.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeeccc
Confidence 45679999999999999999999999999999983 3589999999999999999987 8889999999988875
Q ss_pred h
Q psy10308 129 D 129 (225)
Q Consensus 129 e 129 (225)
.
T Consensus 91 ~ 91 (196)
T 1l3k_A 91 S 91 (196)
T ss_dssp C
T ss_pred C
Confidence 3
No 188
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.44 E-value=4.1e-13 Score=103.07 Aligned_cols=84 Identities=8% Similarity=0.164 Sum_probs=70.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeC---
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEA--- 126 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF--- 126 (225)
+.-|+|.||++.+++++|+++|.+||+|..++|- .++|||||+|.+.++|++|++. +..|.+..|.+.+
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 4579999999999999999999999999999983 4579999999999999999996 3466666665554
Q ss_pred ------------------CChHHHHHHHHhhcc
Q psy10308 127 ------------------PSDAEVQSLLAHLSA 141 (225)
Q Consensus 127 ------------------Ase~ev~~~~~~~~~ 141 (225)
.+|+||..+|.+-+.
T Consensus 81 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~ 113 (167)
T 2cjk_A 81 RDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGT 113 (167)
T ss_dssp HHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSC
T ss_pred hhhccCCCeEEECCCCCCCCHHHHHHHHHhCcc
Confidence 467888888887643
No 189
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.44 E-value=3.1e-14 Score=113.86 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=67.1
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
..-|+|.||+..+++++|+++|.+|| |+.++|- ..+|||||+|.+.++|++|+ .||+..|+++.|.|..++..
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 45699999999999999999999999 6788873 45999999999999999999 78999999999999998865
Q ss_pred H
Q psy10308 131 E 131 (225)
Q Consensus 131 e 131 (225)
|
T Consensus 124 ~ 124 (139)
T 2hgn_A 124 G 124 (139)
T ss_dssp C
T ss_pred C
Confidence 4
No 190
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.9e-13 Score=97.74 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=63.3
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
+.-|+|.||++.+++++|+++|.+||+|..++|- ..+|||||.|.+.++|++|+.. ...+.+..|.|++|..
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 4579999999999999999999999999999985 4599999999999999876443 4677899999999874
No 191
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.44 E-value=3.4e-13 Score=98.39 Aligned_cols=72 Identities=14% Similarity=0.230 Sum_probs=60.9
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC-CCceEEEEeCCHHHHHHHHhhhcc--ceecCceEEEeCCChH
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL-NHSLALAKYSTREEAIKAQGNLNN--CILGNTTIFAEAPSDA 130 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl-~~G~AlVrYstkeEA~kAi~aLn~--c~Lg~ttI~aeFAse~ 130 (225)
..+.|+|.||++.+++++|+++|.+||+|..++|-. ++|||||+|.+.++|++ |++ ..+.+..|.|++|...
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 345799999999999999999999999999999854 59999999999999984 444 4556899999999753
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.43 E-value=2.4e-13 Score=114.55 Aligned_cols=73 Identities=21% Similarity=0.437 Sum_probs=67.9
Q ss_pred cceEEecCCCCC-cchhHHHHHHHhhCCeeEEEe-------cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQ-IDGSTLKTLCVQHGPLQNFHL-------YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQ-ide~tLr~Lc~qhGpV~tfhl-------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..-|+|.||++. +++++|+++|.+||+|..++| +..+|+|||+|.+.++|++|+ .||+..|.+..|.|+||
T Consensus 210 ~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a 288 (292)
T 2ghp_A 210 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLA 288 (292)
T ss_dssp TTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEEC
T ss_pred CceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEe
Confidence 457999999999 999999999999999999998 345899999999999999999 99999999999999999
Q ss_pred Ch
Q psy10308 128 SD 129 (225)
Q Consensus 128 se 129 (225)
..
T Consensus 289 ~~ 290 (292)
T 2ghp_A 289 DK 290 (292)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 193
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.43 E-value=2.2e-13 Score=126.03 Aligned_cols=77 Identities=12% Similarity=0.202 Sum_probs=70.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecC------CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl------~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.|++++|+++|.+||+|+.++|.. .+|||||.|.+.++|++||+.||+..|.+..|.|+||..
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 45799999999999999999999999999999843 489999999999999999999999999999999999985
Q ss_pred HHH
Q psy10308 130 AEV 132 (225)
Q Consensus 130 ~ev 132 (225)
..+
T Consensus 182 ~~~ 184 (437)
T 3pgw_S 182 RTV 184 (437)
T ss_pred CCC
Confidence 443
No 194
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2e-13 Score=111.86 Aligned_cols=82 Identities=15% Similarity=0.235 Sum_probs=72.9
Q ss_pred ceEEecCC----CCCcchhHHHHHHHhhCCeeEEEe------cCCCceEEEEeCC----HHH----HHHHHh--hhccce
Q psy10308 57 TWVLLKNL----TPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYST----REE----AIKAQG--NLNNCI 116 (225)
Q Consensus 57 ~wLvL~NL----tpQide~tLr~Lc~qhGpV~tfhl------nl~~G~AlVrYst----keE----A~kAi~--aLn~c~ 116 (225)
.-|||.|| .+.+++..|+++|.+||+|..|.+ .+.+||+||+|.+ .++ |.+||. .||+|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 46999999 999999999999999999999998 4669999999996 444 899999 899999
Q ss_pred ecCceEEEeCCChHHHHHHHHh
Q psy10308 117 LGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 117 Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
|++++|.|++-.+..++++++-
T Consensus 83 I~Gr~irV~ln~~g~~~~~~~~ 104 (136)
T 2j8a_A 83 IMGFKFEVILNKHSILNNIISK 104 (136)
T ss_dssp ETTEEEEEEECCTTHHHHHHHH
T ss_pred ecCcEEEEEECcccHHHHHHHH
Confidence 9999999999999888777653
No 195
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.8e-13 Score=101.25 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=60.8
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEec---------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY---------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln---------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
.+.-|+|.||++.+++++|+++|.+||+|. +++- ..+|||||+|.+.++|++|+++|+. |.+..|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEec
Confidence 355799999999999999999999999999 6652 4589999999999999999999953 677777776
Q ss_pred CCC
Q psy10308 126 APS 128 (225)
Q Consensus 126 FAs 128 (225)
.+.
T Consensus 84 ~~~ 86 (114)
T 2dnl_A 84 SSP 86 (114)
T ss_dssp CCS
T ss_pred cCC
Confidence 543
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.42 E-value=1.3e-13 Score=115.80 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=70.9
Q ss_pred cceEEecCCCCCc-chhHHHHHHHhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQI-DGSTLKTLCVQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQi-de~tLr~Lc~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|+||++.+ ++++|+++|.+||+|..++|-. .+|+|||+|.+.++|++|+..||+..|.+..|.|+||..
T Consensus 184 ~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 184 SRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp CSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred ccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 4569999999996 9999999999999999999844 499999999999999999999999999999999999986
Q ss_pred HHH
Q psy10308 130 AEV 132 (225)
Q Consensus 130 ~ev 132 (225)
.+.
T Consensus 264 ~~~ 266 (284)
T 3smz_A 264 GPP 266 (284)
T ss_dssp SSC
T ss_pred CCc
Confidence 554
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.41 E-value=2.9e-13 Score=112.44 Aligned_cols=72 Identities=14% Similarity=0.242 Sum_probs=64.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCe--eEEEecCC----CceEEEEeCCHHHHHHHHhhhccceecCce----EEEe
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPL--QNFHLYLN----HSLALAKYSTREEAIKAQGNLNNCILGNTT----IFAE 125 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV--~tfhlnl~----~G~AlVrYstkeEA~kAi~aLn~c~Lg~tt----I~ae 125 (225)
+.-|+|.||++.+++++|++||.+||.| ..+++..+ +|+|||+|.+.+||++|+..||+.+|.+.. |.|+
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk 202 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLK 202 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECE
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEE
Confidence 3469999999999999999999999999 88988543 599999999999999999999999998874 7776
Q ss_pred CC
Q psy10308 126 AP 127 (225)
Q Consensus 126 FA 127 (225)
||
T Consensus 203 ~~ 204 (205)
T 3tyt_A 203 LC 204 (205)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 198
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=4.9e-13 Score=121.92 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=64.4
Q ss_pred ccceEEecC--CCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceec---Cc--eEEEeCC
Q psy10308 55 SGTWVLLKN--LTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILG---NT--TIFAEAP 127 (225)
Q Consensus 55 ~~~wLvL~N--LtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg---~t--tI~aeFA 127 (225)
.+..|+|.| |...++|++|+++|.+||+|..+.+..+||||||+|++.+||++||++|||.++. ++ .|.+.|+
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 456899999 6889999999999999999999999889999999999999999999999997663 23 4666666
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.38 E-value=1.8e-12 Score=109.23 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=65.8
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhC-CeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCC
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHG-PLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAP 127 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhG-pV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFA 127 (225)
..-|+|.||++.+++++|+++|.+|| +|..+++. ..+|||||+|.+.++|++|++.||+..|.+..|.|++|
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 34699999999999999999999999 99999983 46899999999999999999999999999999999874
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.37 E-value=3.3e-13 Score=102.09 Aligned_cols=58 Identities=22% Similarity=0.198 Sum_probs=51.6
Q ss_pred hHHHHHH-HhhCCeeEEEecC-----CCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 71 STLKTLC-VQHGPLQNFHLYL-----NHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 71 ~tLr~Lc-~qhGpV~tfhlnl-----~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
++|++.| .+||+|..++|-. .+|+|||+|.+.++|++|+++|||..+.++.|.|+|+.
T Consensus 41 edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~sp 104 (104)
T 1jmt_A 41 EEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSP 104 (104)
T ss_dssp HHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEECC
T ss_pred HHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEcC
Confidence 3455566 9999999999943 48999999999999999999999999999999999874
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.35 E-value=2.1e-12 Score=100.42 Aligned_cols=74 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeE-----EEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQN-----FHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~t-----fhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
...-|+|.||++.+++++|+++|.+||+|.. ...+..+|||||+|.+.++|++|+ .||+..+.+..|.|+++..
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~ 90 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKG 90 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCC
Confidence 4567999999999999999999999996544 444678999999999999999999 5999999999999998763
No 202
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.35 E-value=1.7e-12 Score=107.25 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=66.7
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
..-|+|.||++.+++++|+++|.+||+|..++|- ..+|+|||.|.+.++|++|++.++ ..+.++.|.|.++.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 3469999999999999999999999999999984 458999999999999999998776 599999999999876
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=9.1e-12 Score=94.73 Aligned_cols=62 Identities=18% Similarity=0.080 Sum_probs=56.2
Q ss_pred CCcchhHHHHHHHhhCCeeEEEe-cCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 66 PQIDGSTLKTLCVQHGPLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 66 pQide~tLr~Lc~qhGpV~tfhl-nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
+.+++++|+++|.+||+|..++| ...+|||||+|.+.++|++|++.+++ +.+..|.|++|.+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 56899999999999999999998 47899999999999999999998655 6788999999875
No 204
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.27 E-value=7.9e-12 Score=105.46 Aligned_cols=74 Identities=18% Similarity=0.261 Sum_probs=66.1
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEec-----CCCceEEEEeCCHHHHHHHHhhhcc-ceec---CceEEEeCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-----LNHSLALAKYSTREEAIKAQGNLNN-CILG---NTTIFAEAP 127 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-----l~~G~AlVrYstkeEA~kAi~aLn~-c~Lg---~ttI~aeFA 127 (225)
.-|+|.||++.+++++|+++|.+||+|..++|- ..+|+|||+|.+.++|++|+..||+ +.+. +..|.|+++
T Consensus 97 ~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~ 176 (261)
T 3sde_A 97 AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPM 176 (261)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEEC
T ss_pred CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeec
Confidence 469999999999999999999999999999984 3499999999999999999999954 5555 888999999
Q ss_pred ChH
Q psy10308 128 SDA 130 (225)
Q Consensus 128 se~ 130 (225)
...
T Consensus 177 ~~~ 179 (261)
T 3sde_A 177 EQF 179 (261)
T ss_dssp CCE
T ss_pred ccc
Confidence 853
No 205
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.14 E-value=6.6e-11 Score=97.37 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=59.1
Q ss_pred chhHHHHHHHhhCCeeEEEec----------CCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH
Q psy10308 69 DGSTLKTLCVQHGPLQNFHLY----------LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 69 de~tLr~Lc~qhGpV~tfhln----------l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev 132 (225)
.+++|++.|.+||+|..++|. ..+|++||+|.+.++|++||++|||..+.+++|.|+|.++++-
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~~f 215 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQERF 215 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHHHH
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHHHh
Confidence 357899999999999999983 4589999999999999999999999999999999999998773
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=7.9e-10 Score=88.02 Aligned_cols=82 Identities=15% Similarity=0.132 Sum_probs=74.2
Q ss_pred ceEEecCCCCC-cchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC-HHHHHHHHhhhc--cceecCceEEEeCCChHHH
Q psy10308 57 TWVLLKNLTPQ-IDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST-REEAIKAQGNLN--NCILGNTTIFAEAPSDAEV 132 (225)
Q Consensus 57 ~wLvL~NLtpQ-ide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst-keEA~kAi~aLn--~c~Lg~ttI~aeFAse~ev 132 (225)
.=|+|.||... ++.++|+++|.+||+|..+.+..++-.|||||.+ .++|++|+..|| +..|.+..+.+++.+.+|=
T Consensus 19 ~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~GeeE 98 (121)
T 1owx_A 19 CLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVE 98 (121)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHHHH
T ss_pred eEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCHHH
Confidence 35899999999 9999999999999999999998888899999999 799999999995 5899998899999997777
Q ss_pred HHHHHh
Q psy10308 133 QSLLAH 138 (225)
Q Consensus 133 ~~~~~~ 138 (225)
+.|++-
T Consensus 99 ~~yw~K 104 (121)
T 1owx_A 99 KEALKK 104 (121)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777653
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=1.7e-08 Score=77.61 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=52.5
Q ss_pred hHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCCh
Q psy10308 71 STLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSD 129 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse 129 (225)
.+|.+.|.+||+|+.+++-.++ +||.|.+.+.|.+||+ ||+..+++++|.|+++++
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred HHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 7899999999999999987766 7999999999999999 999999999999999985
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=2.4e-07 Score=71.74 Aligned_cols=71 Identities=11% Similarity=0.171 Sum_probs=60.0
Q ss_pred ccceEEecCCCCC------cc---hhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 55 SGTWVLLKNLTPQ------ID---GSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 55 ~~~wLvL~NLtpQ------id---e~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
.-..|+|..+.+- .| -.+|.+.|.+||.|+.+++-.++ +||.|.+.+.|.+||+ ||+..+++++|.|.
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKIS 90 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEEe
Confidence 3446888777632 22 26799999999999999987777 9999999999999999 99999999999998
Q ss_pred CCC
Q psy10308 126 APS 128 (225)
Q Consensus 126 FAs 128 (225)
.-+
T Consensus 91 ~k~ 93 (95)
T 1ufw_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 765
No 209
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.23 E-value=3e-06 Score=66.59 Aligned_cols=76 Identities=8% Similarity=0.033 Sum_probs=65.7
Q ss_pred cceEEecCCCCCc-ch----hHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH
Q psy10308 56 GTWVLLKNLTPQI-DG----STLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 56 ~~wLvL~NLtpQi-de----~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ 130 (225)
-+.|+|+||+++| .. +.++.||.+|+++.+|+.=.+=.=+.|-|++.++|++|...||+.++.++.|.+.||...
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~ 84 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL 84 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence 3469999998865 22 477999999999999998666556799999999999999999999999999999999844
Q ss_pred H
Q psy10308 131 E 131 (225)
Q Consensus 131 e 131 (225)
+
T Consensus 85 ~ 85 (104)
T 1wey_A 85 H 85 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.2e-05 Score=63.01 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=69.4
Q ss_pred ceEEecCCCCCcchhHHHHHHHhh-----CCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQH-----GPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAE 131 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qh-----GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~e 131 (225)
.-|-|-||+-.+..+.+|.|...| |+|..+.|-.++|=|+|+|.+...|.||.-+|||.++.+++|.+-- -.|
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT--v~e 99 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT--IND 99 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC--HHH
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC--HHH
Confidence 358899999999999999999999 9999999999999999999999999999999999999999998753 344
Q ss_pred HHHH
Q psy10308 132 VQSL 135 (225)
Q Consensus 132 v~~~ 135 (225)
..++
T Consensus 100 L~~~ 103 (117)
T 2l9w_A 100 MKRY 103 (117)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 4443
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.81 E-value=0.0001 Score=58.99 Aligned_cols=85 Identities=18% Similarity=0.159 Sum_probs=68.0
Q ss_pred cccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecC-ceEEEeCCChHHH
Q psy10308 54 WSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGN-TTIFAEAPSDAEV 132 (225)
Q Consensus 54 ~~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~-ttI~aeFAse~ev 132 (225)
....||.|-++++.. -+.+-.-|.+||.|+........-..-|+|+++.+|+||+.. |+.+|++ ..|-|.-..+.+|
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~~v 99 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDKNV 99 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCHHH
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCHHH
Confidence 467899999999985 667778899999999999866678899999999999999997 9999985 5588888788888
Q ss_pred HHHHHhhc
Q psy10308 133 QSLLAHLS 140 (225)
Q Consensus 133 ~~~~~~~~ 140 (225)
..-++...
T Consensus 100 i~~~~~~~ 107 (119)
T 1wwh_A 100 MENSDRGV 107 (119)
T ss_dssp HC------
T ss_pred HHHhhccc
Confidence 76665543
No 212
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.61 E-value=2.7e-05 Score=73.90 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=44.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCc-eEEEEeCCHHHHHHHHhh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS-LALAKYSTREEAIKAQGN 111 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G-~AlVrYstkeEA~kAi~a 111 (225)
.-.|+|. ++.++++.+|.+.|.|||+|.++|+|.++| ||+|+|+++++++++++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 4578887 899999999999999999999999999988 999999999999988765
No 213
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.38 E-value=0.00049 Score=56.05 Aligned_cols=80 Identities=14% Similarity=0.193 Sum_probs=65.4
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeE-EEec----------------C---CCceEEEEeCCHHHHHHHHhhhcc
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQN-FHLY----------------L---NHSLALAKYSTREEAIKAQGNLNN 114 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~t-fhln----------------l---~~G~AlVrYstkeEA~kAi~aLn~ 114 (225)
..+|++|=+. |+-....+-+.|.+||.|+. |.+. . ...-.-|+|+++.+|++|... |+
T Consensus 6 ~e~~VtVFGF-p~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG 83 (132)
T 3p3d_A 6 GELAILVFGY-PETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NG 83 (132)
T ss_dssp --CEEEEECC-CGGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TT
T ss_pred CceEEEEEec-CHHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CC
Confidence 4679999999 66667778889999999998 4321 1 356779999999999999987 99
Q ss_pred ceecCceEEEeCCChHHHHHHH
Q psy10308 115 CILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 115 c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
.++.+..|-|+-.+++.|+.+.
T Consensus 84 ~ii~G~mIGV~Py~~~~ve~l~ 105 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTKDAVERLQ 105 (132)
T ss_dssp CEETTEECEEEECCHHHHHHHC
T ss_pred eEeCcEEEEEEECCHHHHHHHh
Confidence 9999999999999998887653
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.71 E-value=0.0034 Score=48.38 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=40.6
Q ss_pred CCCceEEEEeCCHHHHHHHHhhhccc------------------------------eecCceEEEe----CCChHHHHHH
Q psy10308 90 LNHSLALAKYSTREEAIKAQGNLNNC------------------------------ILGNTTIFAE----APSDAEVQSL 135 (225)
Q Consensus 90 l~~G~AlVrYstkeEA~kAi~aLn~c------------------------------~Lg~ttI~ae----FAse~ev~~~ 135 (225)
..+||+||+|.+.++|++|++.+++- ....++|.|. -.+|+||..+
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 90 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRV 90 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 46899999999999999999887631 1224566664 3579999999
Q ss_pred HHhhccc
Q psy10308 136 LAHLSAT 142 (225)
Q Consensus 136 ~~~~~~~ 142 (225)
|.+-+..
T Consensus 91 F~~~G~v 97 (158)
T 2kn4_A 91 FEKYGRV 97 (158)
T ss_dssp HHHHSCE
T ss_pred HHhcCCe
Confidence 9987643
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.0087 Score=47.02 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=52.4
Q ss_pred eEEecCCCCCcchhHHHHHHHhh-----CCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEe
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQH-----GPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qh-----GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~ae 125 (225)
-|.|.||++.++++.|+-.|... |+|..+..-. +-|+|.|...+-|++-.+. ..-.|.++.|.|.
T Consensus 10 ~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 10 AVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLR 79 (104)
T ss_dssp EEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEE
T ss_pred EEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEE
Confidence 59999999999999999999984 8999999644 8899999999988877774 1245666666653
No 216
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.98 E-value=0.0039 Score=47.98 Aligned_cols=39 Identities=8% Similarity=-0.070 Sum_probs=34.5
Q ss_pred CCCceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeCCCh
Q psy10308 90 LNHSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEAPSD 129 (225)
Q Consensus 90 l~~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeFAse 129 (225)
.-+|+++|+|.+.++|++|++.| |+..+.+ .|.+++|..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 34899999999999999999999 8888888 888888763
No 217
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=95.50 E-value=0.042 Score=41.59 Aligned_cols=72 Identities=13% Similarity=0.191 Sum_probs=56.5
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEe---c-----CCCceEEEEeCCHHHHHHHHhhhccceecCc----e-EE
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL---Y-----LNHSLALAKYSTREEAIKAQGNLNNCILGNT----T-IF 123 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl---n-----l~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t----t-I~ 123 (225)
..|||++|+|.++|+.+.+....+..+.-|.. . ..-.-|+|.|++.|++..=.+.+||..+-+. . -.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 46899999999999999998888877665554 1 2256799999999999999999999765433 2 36
Q ss_pred EeCCC
Q psy10308 124 AEAPS 128 (225)
Q Consensus 124 aeFAs 128 (225)
||||.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 77774
No 218
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=94.29 E-value=0.043 Score=42.90 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=44.2
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEec-CCCceEEEEeCCHHHHHHHHhhhc
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-LNHSLALAKYSTREEAIKAQGNLN 113 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhln-l~~G~AlVrYstkeEA~kAi~aLn 113 (225)
=++| +++++.--.||.+||..|| .|+|. ++.-.|||-+.+++.|..|...+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTC---SCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 3566 9999999999999999999 44553 567789999999999999988774
No 219
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.28 E-value=0.046 Score=42.79 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=44.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEec-CCCceEEEEeCCHHHHHHHHhhhc
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY-LNHSLALAKYSTREEAIKAQGNLN 113 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhln-l~~G~AlVrYstkeEA~kAi~aLn 113 (225)
++| +++++.--.||.+||..|| .|+|. ++.-.|||-+.+++.|..|...+.
T Consensus 9 ~~l-~FP~ewKt~Di~~lFs~fg---gv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 9 LHV-TFPKEWKTSDLYQLFSAFG---NIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEE-ECCTTCCHHHHHHHTTTSE---EEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEE-eCChhhhhHHHHHHHhccC---CEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 566 9999999999999999999 67774 677889999999999999988774
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.74 E-value=0.35 Score=37.24 Aligned_cols=70 Identities=16% Similarity=0.224 Sum_probs=50.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEe-----------cCCCceEEEEeCCHHHHHHHHhhhccceecC---ce
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-----------YLNHSLALAKYSTREEAIKAQGNLNNCILGN---TT 121 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhl-----------nl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~---tt 121 (225)
+-.|||+.|+|-++|+.+. .+.+++...-- ...-.-|+|.|++.|+...-.+..++.++-+ ++
T Consensus 9 ~~KvVIRrLPP~Ltee~F~---~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLE---EQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCEEEECCCSCSCHHHHT---TTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred ceeEEEeCCCCCCCHHHHH---HHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 3469999999999999855 55566554311 0114568999999999999999999965533 33
Q ss_pred --EEEeCCC
Q psy10308 122 --IFAEAPS 128 (225)
Q Consensus 122 --I~aeFAs 128 (225)
-+||||.
T Consensus 86 ~~a~VE~AP 94 (97)
T 2l08_A 86 YPAVVEFAP 94 (97)
T ss_dssp EEEEEEECC
T ss_pred eeeEEEecC
Confidence 5678874
No 221
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=88.75 E-value=1.4 Score=29.31 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=47.3
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL 112 (225)
-|.|.+++=.-....++....+ -.|..+.+++..+.+-|.|++.++-.+||+.+
T Consensus 8 ~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 8 VLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHHc
Confidence 3788999999999999999999 88999999999999999999666677777654
No 222
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=85.98 E-value=2.5 Score=27.66 Aligned_cols=54 Identities=9% Similarity=0.039 Sum_probs=46.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeC----CHHHHHHHHhhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS----TREEAIKAQGNL 112 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs----tkeEA~kAi~aL 112 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|+|+ +.++..+||+.+
T Consensus 6 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 6 VGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 678899988889999999999999999999999999999996 456677777654
No 223
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=85.12 E-value=5 Score=25.12 Aligned_cols=53 Identities=9% Similarity=-0.011 Sum_probs=43.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC---HHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST---REEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst---keEA~kAi~a 111 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|+|.. .++..++++.
T Consensus 4 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 4 LKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp EEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHT
T ss_pred EEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 6778888888889999999999899999999999999999975 3445555554
No 224
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=84.97 E-value=3.2 Score=25.52 Aligned_cols=53 Identities=4% Similarity=0.031 Sum_probs=42.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC---HHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST---REEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst---keEA~kAi~a 111 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|.|+. .++-.+++..
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 5 FQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp ECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 5678888888888899999998889999999999999999973 4445555554
No 225
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=84.92 E-value=5 Score=24.74 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=43.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~a 111 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|.|.. .++..+++..
T Consensus 4 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 4 FSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6778888888889999999999889999999999999999974 3444555554
No 226
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=83.26 E-value=6.5 Score=26.31 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=47.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
..-|.|.+++-.-+...++....+.--|..+.+++..+.+.|.|.. .++..++|+.+
T Consensus 10 ~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3447889999999999999999999999999999999999999963 45556666654
No 227
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=83.24 E-value=5 Score=24.97 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=42.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCH---HHHHHHHhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR---EEAIKAQGN 111 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstk---eEA~kAi~a 111 (225)
-+.|.+++-.-....++....+.--|..+.+++..+.+.|.|+.. ++..+++..
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 62 (71)
T 2xmw_A 6 NLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62 (71)
T ss_dssp EEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHH
Confidence 367888888888888999999998999999999999999999843 444455544
No 228
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=82.57 E-value=5.7 Score=24.85 Aligned_cols=55 Identities=11% Similarity=0.089 Sum_probs=44.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-+.|.+++-.-....++....+.--|..+.+++..+.+.|.|+. .++..+++..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 6 TLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 36778888888889999999999999999999999999999964 34455556543
No 229
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=81.48 E-value=8 Score=24.67 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=44.7
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC--HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST--REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst--keEA~kAi~aL 112 (225)
-+.|.+++-.-....++....+.--|..+.+++..+.+.|.|+. .++..++|..+
T Consensus 6 ~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 6 SWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHc
Confidence 36789999888889999999999889999999999999999986 34444555543
No 230
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=81.29 E-value=6.2 Score=25.17 Aligned_cols=54 Identities=11% Similarity=0.083 Sum_probs=44.3
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|.|+. .++..++++.+
T Consensus 6 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 6 ISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 6778888888888899999999999999999999999999974 35555666554
No 231
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=81.26 E-value=6.5 Score=25.44 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=46.1
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-+.|.+++-.-....++....+.--|..+.+++..+.+.|.|.. .++..++++.+
T Consensus 11 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 11 TISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 47789999999999999999999999999999999999999974 35555666554
No 232
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=80.93 E-value=6 Score=24.96 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=44.1
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCH----HHHHHHHhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR----EEAIKAQGN 111 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstk----eEA~kAi~a 111 (225)
-+.|.+++-.-....++....+.--|..+.+++..+.+.|.|... ++..++++.
T Consensus 7 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 7 ELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp EEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 477899999888999999999998999999999999999999752 334445544
No 233
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=80.61 E-value=5.5 Score=24.95 Aligned_cols=53 Identities=2% Similarity=0.047 Sum_probs=43.2
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~a 111 (225)
|.|.+++-.-....++....+.--|..+.+++..+.+.|.|.. .++..+++..
T Consensus 9 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 65 (71)
T 2l3m_A 9 LQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIED 65 (71)
T ss_dssp EEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHH
T ss_pred EEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6788998888888899888998889999999999999999974 3444555554
No 234
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=80.54 E-value=2.8 Score=26.89 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=44.2
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC---HHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST---REEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst---keEA~kAi~a 111 (225)
+.|.+++-.-+...++....+.--|..+.+++..+.+.|+|.. .++..+||..
T Consensus 6 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 6 LQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHH
Confidence 6788999988999999999999999999999999999999954 3445555554
No 235
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=79.66 E-value=10 Score=27.80 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=38.8
Q ss_pred eeEEEec-CCCceEEEEeCCHHHHHHHHhhhccc--eecCceEEEeCCChHHHHHHHH
Q psy10308 83 LQNFHLY-LNHSLALAKYSTREEAIKAQGNLNNC--ILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 83 V~tfhln-l~~G~AlVrYstkeEA~kAi~aLn~c--~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
|..+.+. +-.||.||+..-.++...+|..+.++ -+++ =-+++||++||.
T Consensus 40 i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV~gfvg~------pl~~~Ev~~il~ 91 (92)
T 3lpe_A 40 VYSILASESLKGYVLVEAETKGDVEELIKGMPRVRGIVPG------TIAIEEIEPLLT 91 (92)
T ss_dssp EEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTEEEECSS------CCCHHHHHHHHC
T ss_pred EEEEEEecccCCEEEEEEecchhHHHHHHCCCCceEeCCC------CCCHHHHHHHhC
Confidence 5555554 57999999999999999999998884 3333 567999999984
No 236
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=79.28 E-value=0.22 Score=45.92 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=17.3
Q ss_pred ceEEEe----CCChHHHHHHHHhhccc
Q psy10308 120 TTIFAE----APSDAEVQSLLAHLSAT 142 (225)
Q Consensus 120 ttI~ae----FAse~ev~~~~~~~~~~ 142 (225)
++|.|. -++|++|..||.+.+..
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I 129 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPI 129 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCe
Confidence 466663 46799999999987654
No 237
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=79.22 E-value=9.3 Score=23.90 Aligned_cols=55 Identities=7% Similarity=0.007 Sum_probs=44.5
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-+.|.+++-.-....++....+.--|..+.+++..+.+.|.|.. .++..+++..+
T Consensus 9 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 9 AMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHC
Confidence 47789999888888899999998889999999999999999974 34455555543
No 238
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=78.77 E-value=6.8 Score=24.48 Aligned_cols=55 Identities=11% Similarity=0.056 Sum_probs=43.9
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeC---CHHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS---TREEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs---tkeEA~kAi~aL 112 (225)
-+.|.+++-.-....++....+.--|..+.+++..+.+.|.|. +.++..++++.+
T Consensus 5 ~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHC
Confidence 3677888888888889999999989999999999999999997 234445555543
No 239
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=78.68 E-value=4.8 Score=25.50 Aligned_cols=52 Identities=4% Similarity=0.105 Sum_probs=41.5
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~a 111 (225)
+.|.+++-.-....++....+. .|..+.+++..+.+.|.|...++..+|+..
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 5 LYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp EECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCHHHHHHHHHT
T ss_pred EEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCHHHHHHHHHH
Confidence 5677888777788899999999 899999999999999999876334444443
No 240
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=78.37 E-value=4.9 Score=25.19 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=44.0
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-+.|.+++-.-....++....+.--|..+.+++..+.+.|.|.. .++..+++..+
T Consensus 6 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHC
Confidence 36778888877888888988988889999999999999999974 34555666554
No 241
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=77.89 E-value=9.1 Score=23.08 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=41.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~a 111 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|.|.. .++..+++..
T Consensus 6 ~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (69)
T 2qif_A 6 LQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIED 62 (69)
T ss_dssp EEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6778888877778888888888889999999999999999974 3444455544
No 242
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=76.11 E-value=7.3 Score=28.28 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=46.1
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-|.|.+++-......++....+.--|..+.+++..+.+.|+|+. .++..+||+.+
T Consensus 83 ~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 83 ELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred EEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhC
Confidence 47789999888889999999999999999999999999999974 45566666654
No 243
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=75.60 E-value=3.5 Score=34.68 Aligned_cols=75 Identities=12% Similarity=0.114 Sum_probs=51.0
Q ss_pred EEecCCCC-C--------cchhHHHHHH--HhhCCeeEEEecCC---CceEEEEeCCH----HHHH---HHHhhh-cc--
Q psy10308 59 VLLKNLTP-Q--------IDGSTLKTLC--VQHGPLQNFHLYLN---HSLALAKYSTR----EEAI---KAQGNL-NN-- 114 (225)
Q Consensus 59 LvL~NLtp-Q--------ide~tLr~Lc--~qhGpV~tfhlnl~---~G~AlVrYstk----eEA~---kAi~aL-n~-- 114 (225)
.+|.|+.- + .....|++.| +.|.|+..-+++-. .|+|+|+|..- .+|. +....- ++
T Consensus 15 gIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~fek~Fe~~~~GK~ 94 (172)
T 4e8u_A 15 GIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKK 94 (172)
T ss_dssp EEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHHHHHHHHHTTCSHH
T ss_pred EEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHHHHHHHHHcCCCHH
Confidence 57789877 3 5568999977 99999999998644 67899999873 3332 222211 11
Q ss_pred ----ceecCceEEEeCCChHHHH
Q psy10308 115 ----CILGNTTIFAEAPSDAEVQ 133 (225)
Q Consensus 115 ----c~Lg~ttI~aeFAse~ev~ 133 (225)
..-.+..|.--+|.++|..
T Consensus 95 dW~~~~~~~~~lyGW~Ar~dDy~ 117 (172)
T 4e8u_A 95 DWLKKDGPKLGLYGWIARADDYN 117 (172)
T ss_dssp HHTCSSSCCCSCEEEECBHHHHH
T ss_pred HHhhCCCCCCceEEEeccccccc
Confidence 1123566888888888873
No 244
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=74.93 E-value=6.4 Score=25.43 Aligned_cols=54 Identities=9% Similarity=0.021 Sum_probs=44.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
|.|.+++-.-....++....+.--|..+.+++..+.+.|.|.. .++..++++.+
T Consensus 7 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 7 IQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 6788888888888999999999889999999999999999974 34555666554
No 245
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=73.82 E-value=11 Score=23.01 Aligned_cols=53 Identities=4% Similarity=-0.023 Sum_probs=42.5
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~a 111 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|.|.. .++..+++..
T Consensus 7 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 7 MQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6788888888888888888888889999999999999999974 3444555554
No 246
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=73.42 E-value=7.1 Score=26.97 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=50.4
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhhccceecCceEEEeCCChHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNLNNCILGNTTIFAEAPSDAEVQ 133 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~ 133 (225)
-|.|.+++-.-+...++....+.--|..+.+++..+.+.|.|.. .++..+||..+ ..++ ..|...++.+..
T Consensus 6 ~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~---g~Gg--y~~~~~~~~~~~ 80 (90)
T 2g9o_A 6 TFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV---SPGL--YRVSITSEVEIE 80 (90)
T ss_dssp EEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT---STTT--CEEECCCCC---
T ss_pred EEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc---cCCC--eEEEEeCCCccc
Confidence 36788888888888999999999999999999999999999964 45556666654 1111 234555555544
Q ss_pred HHHH
Q psy10308 134 SLLA 137 (225)
Q Consensus 134 ~~~~ 137 (225)
.-|.
T Consensus 81 ~~~~ 84 (90)
T 2g9o_A 81 GRLE 84 (90)
T ss_dssp ----
T ss_pred cccc
Confidence 4443
No 247
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.38 E-value=6.3 Score=37.17 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=46.2
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhc
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLN 113 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn 113 (225)
..+++|+ +++.+...+|+.+|..||.|.-.. ++.-.|||-+.+++.|..+.++++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~w--iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISW--IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEE--CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEE--EcCCeEEEEECCHHHHHHHHHHHH
Confidence 4588887 889999999999999999654333 666679999999999999999885
No 248
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=71.18 E-value=10 Score=27.71 Aligned_cols=54 Identities=9% Similarity=0.069 Sum_probs=37.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeC----CHHHHHHHHhhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS----TREEAIKAQGNL 112 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs----tkeEA~kAi~aL 112 (225)
|.|.+++-......++....+.--|..+.+++..+.+.|+|. +.++-.+||+.+
T Consensus 78 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 78 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp EEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 566777777777777777777777777777777777777776 344455555543
No 249
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=70.79 E-value=16 Score=23.61 Aligned_cols=52 Identities=6% Similarity=0.066 Sum_probs=42.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeC-CHHHHHHHHhhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS-TREEAIKAQGNL 112 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs-tkeEA~kAi~aL 112 (225)
|.| +++=.-....++....+.--| .+.+++..+.+.|.|. +.++..+||+.+
T Consensus 6 ~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~ 58 (68)
T 3iwl_A 6 FSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKT 58 (68)
T ss_dssp EEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTT
T ss_pred EEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHc
Confidence 667 888888899999999999889 9999999999999985 445556666543
No 250
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=70.18 E-value=17 Score=26.27 Aligned_cols=55 Identities=4% Similarity=-0.073 Sum_probs=45.4
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-|.|.+++-.-+...++....+.--|..+.+++..+.+.|.|.. .++..++|..+
T Consensus 11 ~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 11 QMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 37789999999999999999999889999999999999999984 34455555543
No 251
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=69.06 E-value=14 Score=30.48 Aligned_cols=87 Identities=11% Similarity=0.082 Sum_probs=60.8
Q ss_pred ccceE-EecCC----CCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC-HHHHHHHHhhhccceecCceEEEeCCC
Q psy10308 55 SGTWV-LLKNL----TPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST-REEAIKAQGNLNNCILGNTTIFAEAPS 128 (225)
Q Consensus 55 ~~~wL-vL~NL----tpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst-keEA~kAi~aLn~c~Lg~ttI~aeFAs 128 (225)
++.+| +|+++ +-.|.=.+||++|.+-| ..++.-|+.-|..+.+-.. .++-+..|+.+=.-. -+..|-|-+-+
T Consensus 4 M~~yiaLLRGINVGG~nkv~MadLr~~l~~lG-f~~V~TyI~SGNvvF~s~~~~~~l~~~ie~~l~~~-fg~~v~v~vrs 81 (183)
T 2hiy_A 4 MTRYALLVRGINVGGKNKVVMAELRQELTNLG-LEKVESYINSGNIFFTSIDSKAQLVEKLETFFAVH-YPFIQSFSLLS 81 (183)
T ss_dssp CEEEEEECSSCSCC-CCCCCHHHHHHHHHHHT-CEEEEEETTTTEEEEEECSCHHHHHHHHHHHHHHH-CTTCCCCEEEE
T ss_pred hhhhhhhccceecCCCCcccHHHHHHHHHHcC-CccceEEEecCCEEEecCCCHHHHHHHHHHHHHHh-cCCCCCEEEec
Confidence 55675 66888 56799999999999998 7888889999999998764 233333343321111 33445555567
Q ss_pred hHHHHHHHHhhcccc
Q psy10308 129 DAEVQSLLAHLSATA 143 (225)
Q Consensus 129 e~ev~~~~~~~~~~~ 143 (225)
.+|++..++..+-++
T Consensus 82 ~~el~~i~~~~Pf~~ 96 (183)
T 2hiy_A 82 LEDFEAELENLPAWW 96 (183)
T ss_dssp HHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHhCCCCc
Confidence 899999999877554
No 252
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=67.79 E-value=14 Score=23.62 Aligned_cols=53 Identities=8% Similarity=0.036 Sum_probs=42.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~a 111 (225)
+.|.+++-.-+...++....+.--|..+.+++..+.+.|.|.. .++..+++..
T Consensus 7 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 63 (80)
T 1jww_A 7 FDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDK 63 (80)
T ss_dssp EEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 6778888887888888888888889999999999999999974 3444555554
No 253
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=67.58 E-value=29 Score=27.30 Aligned_cols=74 Identities=15% Similarity=0.178 Sum_probs=46.8
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh--c-c----ceecCce--EEEeCC
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL--N-N----CILGNTT--IFAEAP 127 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL--n-~----c~Lg~tt--I~aeFA 127 (225)
+-|.|-|++.-.-..++--.....| ..|.+.--.|-|+|||...+|-..||+-| | + .++-++- ++-.++
T Consensus 13 clikiinipqgtlkaevvlavrhlg--yefycdyidgqamirfqnsdeqrlaiqkllnhnnnklqieirgqicdvistip 90 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLG--YEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICDVISTIP 90 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTC--CCEEEEECSSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEEEECCCC
T ss_pred cEEEEEecCCCceeeeeEEeehhcC--eeEeeeeecCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeeeeeecCC
Confidence 3577888877644443332223333 45777667899999999999999999987 2 2 2444443 334455
Q ss_pred ChHHH
Q psy10308 128 SDAEV 132 (225)
Q Consensus 128 se~ev 132 (225)
.|+|-
T Consensus 91 edeek 95 (129)
T 4eyt_A 91 EDEEK 95 (129)
T ss_dssp HHHHH
T ss_pred chhhh
Confidence 55554
No 254
>1nz8_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.58.42.1
Probab=66.70 E-value=9.7 Score=28.76 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=39.7
Q ss_pred CeeEEEecCCCceEEEEeCCHH-----HHHHHHhhhccc--eecCceEEEeCCChHHHHHHHHhhc
Q psy10308 82 PLQNFHLYLNHSLALAKYSTRE-----EAIKAQGNLNNC--ILGNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 82 pV~tfhlnl~~G~AlVrYstke-----EA~kAi~aLn~c--~Lg~ttI~aeFAse~ev~~~~~~~~ 140 (225)
..+.....+-.||.||+.+-.+ ++-..|....++ -++... ...--+++||++|+++..
T Consensus 52 k~~~~~~~lfPGYVFV~~~~~~~~~~~~~~~~vr~t~gV~gfvg~g~-~P~pi~~~ev~~i~~~~~ 116 (119)
T 1nz8_A 52 KKEVVRKKLFPGYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGM-RPVPLSPDEVRHILEVSG 116 (119)
T ss_dssp CEEEEEEESSTTEEEEEECCCSSSSCCHHHHHHHHSTTCCCCCCSSS-SSCBCCHHHHHHHHHHHT
T ss_pred EEEEEEEeCCCCEEEEEeeccccccchhHHHHHHcCCCceEEeCCCC-EEeECCHHHHHHHHHHHh
Confidence 4444444567899999999888 888888888773 222111 112356999999999864
No 255
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=65.28 E-value=30 Score=23.62 Aligned_cols=55 Identities=4% Similarity=0.049 Sum_probs=44.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-+.|.+++-.-+...++....+.--|..+.+++..+.+.|.|.. .++..++|..+
T Consensus 19 ~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 19 YFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 37788999988889999999999889999999999999999974 34445555543
No 256
>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A
Probab=63.61 E-value=21 Score=21.41 Aligned_cols=53 Identities=6% Similarity=0.027 Sum_probs=40.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeC-CHHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS-TREEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs-tkeEA~kAi~a 111 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|.+. +.++..+|+..
T Consensus 5 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~ 58 (64)
T 2xmm_A 5 LTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIAS 58 (64)
T ss_dssp EECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHH
T ss_pred EEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHH
Confidence 567788877777888888888888999999999999999864 23444455543
No 257
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=55.76 E-value=25 Score=24.27 Aligned_cols=54 Identities=7% Similarity=-0.068 Sum_probs=43.2
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC-HHHHHHHHhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST-REEAIKAQGN 111 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst-keEA~kAi~a 111 (225)
-|.|.+++-.-+...++....+.--|..+.+++..+.+.|.|.. .++..+||+.
T Consensus 25 ~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~ 79 (85)
T 2k2p_A 25 SFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITA 79 (85)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHH
Confidence 47788888888888899999999899999999999999999864 3444555554
No 258
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=53.62 E-value=36 Score=26.65 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=46.4
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-|.|.+++-.-....++....+.--|..+.+++..+.+.|+|.. .++-.+||..+
T Consensus 125 ~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 183 (202)
T 2rop_A 125 LIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDM 183 (202)
T ss_dssp EEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 47889999999999999999999999999999999999999964 45556666654
No 259
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=52.83 E-value=57 Score=26.72 Aligned_cols=64 Identities=6% Similarity=0.052 Sum_probs=38.3
Q ss_pred HHHHHHHhhCCeeEEEecCCC-ceEEEEeC-CHHHHHHHHhhhccceec------CceEEEeCCChHHHHHHHHhhc
Q psy10308 72 TLKTLCVQHGPLQNFHLYLNH-SLALAKYS-TREEAIKAQGNLNNCILG------NTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 72 tLr~Lc~qhGpV~tfhlnl~~-G~AlVrYs-tkeEA~kAi~aLn~c~Lg------~ttI~aeFAse~ev~~~~~~~~ 140 (225)
.|++.+.++| +.+.... .+.+|++. +.++..+.... +++.+. ...|++-|++++||.++++-+.
T Consensus 275 ~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~g~~~~~~~~iRis~~~~~~i~~~~~~l~ 346 (354)
T 3ly1_A 275 ILLKALEDLK----LPYLPSEGNFVFHQLVVPLKDYQTHMAD-AGVLIGRAFPPADNWCRISLGTPQEMQWVADTMR 346 (354)
T ss_dssp HHHHHHHHHT----CCBCCCCSSEEEEECSSCHHHHHHHHHH-TTEECCCCCTTCTTEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCC----CeECCCCceEEEEECCCCHHHHHHHHHH-CCEEEeecCCCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 4455556664 2233333 46677886 34444443332 564433 3559999999999999987653
No 260
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=49.84 E-value=49 Score=21.26 Aligned_cols=53 Identities=6% Similarity=-0.002 Sum_probs=41.4
Q ss_pred EEecCCCCCcchhHHHHHHHhhC-CeeEEEecCCCceEEEEeC-CHHHHHHHHhhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHG-PLQNFHLYLNHSLALAKYS-TREEAIKAQGNL 112 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhG-pV~tfhlnl~~G~AlVrYs-tkeEA~kAi~aL 112 (225)
+.|. ++=.-....++....+.- -|..+.+++..+.+.|.|. +.++..+|++.+
T Consensus 9 ~~v~-m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~ 63 (73)
T 1cc8_A 9 FNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKT 63 (73)
T ss_dssp EEEC-CCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTT
T ss_pred EEEe-eECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHh
Confidence 5566 777777888888888888 8999999999999999985 345556666543
No 261
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=49.02 E-value=25 Score=30.55 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=36.7
Q ss_pred cCCCceEEEEeCCHHHHHHHHhhhccce--e--cCceEEEeCCChHHHHHHHHhhc
Q psy10308 89 YLNHSLALAKYSTREEAIKAQGNLNNCI--L--GNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 89 nl~~G~AlVrYstkeEA~kAi~aLn~c~--L--g~ttI~aeFAse~ev~~~~~~~~ 140 (225)
.+-.||.||+..-.+++-..+....++. + ++.-+ --+|+||++|+.+..
T Consensus 133 ~lfPGYvfv~~~~~d~~~~~v~~tp~V~~fv~~g~~P~---pl~~~ev~~i~~~~~ 185 (248)
T 1m1h_A 133 KIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPV---PLKEEEVQNILNQIK 185 (248)
T ss_dssp SSSTTEEEEEECCCHHHHHHHHTSTTEEEECEETTEEC---EECHHHHHHHHHHTT
T ss_pred cceeeEEEEEEeccHHHHHHHhcCCCeEEEEcCCCEEe---EeCHHHHHHHHHhhc
Confidence 5668999999999999999999887741 1 22211 247999999999874
No 262
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.42 E-value=28 Score=24.70 Aligned_cols=52 Identities=12% Similarity=0.096 Sum_probs=41.7
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeC-CHHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS-TREEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs-tkeEA~kAi~a 111 (225)
|.|. ++-.-....++....+.--|..+.+++..+.+.|.|. +.++..+||+.
T Consensus 23 l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~ 75 (98)
T 2crl_A 23 FAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEG 75 (98)
T ss_dssp EEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHT
T ss_pred EEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHH
Confidence 6677 8888888899999999989999999999999999985 33445555554
No 263
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=50.00 E-value=4.8 Score=30.86 Aligned_cols=52 Identities=25% Similarity=0.389 Sum_probs=34.0
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCC--Cc---eEE--EEeCCHHHHHHHHhhhcc
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN--HS---LAL--AKYSTREEAIKAQGNLNN 114 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~--~G---~Al--VrYstkeEA~kAi~aLn~ 114 (225)
|-|..+. ++++|+.+-.+++ +..++++.. +| |.+ =-|.+++||.+|++.|-.
T Consensus 28 LQL~a~~---~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 28 LQLSSSS---NYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 4444443 3566777777886 556776543 22 222 269999999999999853
No 264
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha}
Probab=43.25 E-value=36 Score=30.27 Aligned_cols=78 Identities=12% Similarity=0.066 Sum_probs=47.6
Q ss_pred ccceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhh-hccceecCceEEEeCCC-----
Q psy10308 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGN-LNNCILGNTTIFAEAPS----- 128 (225)
Q Consensus 55 ~~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~a-Ln~c~Lg~ttI~aeFAs----- 128 (225)
.-+|||+ + .+.+=+. ...+=.++|||+++-|.|..+++- ..|++|.+.+.. |......+..+.|.+-.
T Consensus 23 ~rs~l~~-~-~~~~~ek-a~~~~aD~~~~~~vilDLEDaVa~---~~K~~AR~~v~~~L~~~~~~~~~~~VRIN~~~t~~ 96 (332)
T 3qqw_A 23 AACEHFA-G-SEKLIGK-AMDLQVEYGPVFDVTCDCEDGAAA---GQEREHAEMVARMIASDRNVHGRAGARIHDPSHPA 96 (332)
T ss_dssp CSEEEEE-C-SHHHHHH-HHHHHHHHCSSEEEEEEHHHHSCT---TCHHHHHHHHHHHHHSTTCCSSCEEEECCCTTSTT
T ss_pred cHHHHhc-C-CHHHHHH-HHhCCCCcCCCCcEEEECCCCCCC---CcHHHHHHHHHHHHhcCcccCCEEEEEECCCCChH
Confidence 3469999 3 3333222 233446789999999998888764 667777665543 34444455566666643
Q ss_pred -hHHHHHHHHh
Q psy10308 129 -DAEVQSLLAH 138 (225)
Q Consensus 129 -e~ev~~~~~~ 138 (225)
++|+..++..
T Consensus 97 ~~~DL~av~~~ 107 (332)
T 3qqw_A 97 WRQDVDIIVNG 107 (332)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 3456555553
No 265
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=42.12 E-value=61 Score=24.22 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=35.0
Q ss_pred chhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccc
Q psy10308 69 DGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNC 115 (225)
Q Consensus 69 de~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c 115 (225)
-+.+++.++.+.|-- ++.+..+.|..+|.=.+.+.+++|++.++..
T Consensus 33 gGk~Ik~I~e~tGv~-~IdI~eddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 33 HGSNIQQARKVPGVT-AIELDEDTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp TTHHHHHHHTSTTEE-EEEEETTTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CcHHHHHHHHHhCCe-EEEEEcCCCEEEEEECCHHHHHHHHHHHHhh
Confidence 467888888888753 2333445699999888999999999998873
No 266
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=40.79 E-value=95 Score=23.39 Aligned_cols=62 Identities=10% Similarity=0.018 Sum_probs=38.0
Q ss_pred EEecCCCCCcchhHHHHHHHh-------hCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCc-eEEEeCCChH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQ-------HGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNT-TIFAEAPSDA 130 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~q-------hGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t-tI~aeFAse~ 130 (225)
||+=.|.+.++++++.+++.. ---|+.|+++.+. +.+ .++ -+-+ -++++|++++
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~--------s~e-------~~~---~g~~~~l~~~F~s~e 85 (121)
T 3bb5_A 24 LVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNR--------DFE-------QKS---ERYPYGFLCTFTDKA 85 (121)
T ss_dssp EEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBC--------CTT-------SSC---TTCCEEEEEEESSHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC--------Ccc-------ccC---CCeeEEEEEEECCHH
Confidence 778888888887766666654 3345555553321 100 111 1122 2889999999
Q ss_pred HHHHHHHh
Q psy10308 131 EVQSLLAH 138 (225)
Q Consensus 131 ev~~~~~~ 138 (225)
+.+.|..|
T Consensus 86 ~l~~Y~~h 93 (121)
T 3bb5_A 86 ALDAYAVH 93 (121)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHcC
Confidence 99998875
No 267
>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A
Probab=39.91 E-value=67 Score=20.04 Aligned_cols=44 Identities=5% Similarity=-0.089 Sum_probs=38.2
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstk 102 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|+|...
T Consensus 7 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~ 50 (71)
T 2aj0_A 7 YRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS 50 (71)
T ss_dssp EEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC
T ss_pred EEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc
Confidence 67788888778888888888888899999999999999999864
No 268
>2oug_A Transcriptional activator RFAH; transcription factor, virulence, transcription pausing, transcription elongation; 2.10A {Escherichia coli}
Probab=38.39 E-value=24 Score=27.58 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=38.1
Q ss_pred CCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccc--eecCceEEEeCCChHHHHHHHHhhc
Q psy10308 81 GPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNC--ILGNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 81 GpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c--~Lg~ttI~aeFAse~ev~~~~~~~~ 140 (225)
|..+.....+-.||.||+.+-.++.-..+....++ -++... ...--+++||++|++...
T Consensus 41 gk~~~~~~plfpgYvFV~~~~~~~~~~~v~~~~gv~~fv~~g~-~p~pi~~~ei~~i~~~~~ 101 (162)
T 2oug_A 41 GKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGA-SPAIVPSAVIHQLSVYKP 101 (162)
T ss_dssp SSEEEEEEESSTTEEEEEECTTTSCHHHHHHSTTEEEECCSSS-SSCCCCCHHHHHHHHCC-
T ss_pred CcEEEEEEecCCCEEEEEEEcccCceEEEEeCCCccEEECCCC-EeeEcCHHHHHHHHhhhc
Confidence 33444444677999999999877777788877763 122111 011246899999998763
No 269
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=38.16 E-value=52 Score=28.30 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=31.8
Q ss_pred EEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhhc
Q psy10308 96 LAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 96 lVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~ 140 (225)
+|-+.+.|.++++++.+.+. -..+.+++.++++|++++++.-
T Consensus 57 ~i~~r~~~~l~~~~~~~g~~---~~~~~~Dv~~~~~v~~~~~~~~ 98 (273)
T 4fgs_A 57 FITGRRKDVLDAAIAEIGGG---AVGIQADSANLAELDRLYEKVK 98 (273)
T ss_dssp EEEESCHHHHHHHHHHHCTT---CEEEECCTTCHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHcCCC---eEEEEecCCCHHHHHHHHHHHH
Confidence 34566788888888887541 2348899999999999988764
No 270
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=37.66 E-value=75 Score=22.81 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=35.6
Q ss_pred EEecCCCCCcchhHHHHHH-------HhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeCCChH
Q psy10308 59 VLLKNLTPQIDGSTLKTLC-------VQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc-------~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeFAse~ 130 (225)
||+=.|.+.++++++..++ .+.--|+.++++.+.. . . ++ -.--++++|++++
T Consensus 8 iVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-------~----------~~~~---~~~~~~~~F~s~e 67 (103)
T 2qyc_A 8 VVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-------A----------RSQG---YTHATSSAFVDAA 67 (103)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-------T----------TCTT---CCEEEEEEESSHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-------C----------CCCC---ccEEEEEEECCHH
Confidence 5666677777665544444 4455567777654411 0 1 11 1222888899999
Q ss_pred HHHHHHHh
Q psy10308 131 EVQSLLAH 138 (225)
Q Consensus 131 ev~~~~~~ 138 (225)
+.+.|..|
T Consensus 68 ~l~~Y~~h 75 (103)
T 2qyc_A 68 AHDAYQVC 75 (103)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhCC
Confidence 88888765
No 271
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=35.94 E-value=1.7e+02 Score=24.35 Aligned_cols=66 Identities=14% Similarity=0.150 Sum_probs=38.4
Q ss_pred HHHHHHHhhCCeeEEEecCCCc-eEEEEeCCHHHHHHHHhhhcccee---c-----CceEEEeCCChHHHHHHHHhhc
Q psy10308 72 TLKTLCVQHGPLQNFHLYLNHS-LALAKYSTREEAIKAQGNLNNCIL---G-----NTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 72 tLr~Lc~qhGpV~tfhlnl~~G-~AlVrYstkeEA~kAi~aLn~c~L---g-----~ttI~aeFAse~ev~~~~~~~~ 140 (225)
.|++.+.++|.|.. +....| |.+|++.+.++..+... -+++.+ + ...|++.|++++|+.++++-+.
T Consensus 278 ~l~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~-~~gI~v~~~g~~~~~~~~iRis~~~~~e~~~~~~~l~ 352 (356)
T 1fg7_A 278 YLIAALKEIPCVEQ--VFDSETNYILARFKASSAVFKSLW-DQGIILRDQNKQPSLSGCLRITVGTREESQRVIDALR 352 (356)
T ss_dssp HHHHHHHHSTTEEE--ECCCSSSEEEEEETTHHHHHHHHH-HTTEECEECTTSTTCTTEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCceE--ECCCCCeEEEEECCCHHHHHHHHH-HCCEEEEECCCCCCCCCeEEEEeCCHHHHHHHHHHHH
Confidence 44555666776533 223333 66788863333333322 144322 2 1369999999999999998653
No 272
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=35.67 E-value=1.7e+02 Score=23.97 Aligned_cols=64 Identities=8% Similarity=0.077 Sum_probs=37.9
Q ss_pred hHHHHHHHhhCCeeEEEecC-CCceEEEEeCC--HHHHHHHHhhhcccee--c----CceEEEeCCChHHHHHHHHhh
Q psy10308 71 STLKTLCVQHGPLQNFHLYL-NHSLALAKYST--REEAIKAQGNLNNCIL--G----NTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl-~~G~AlVrYst--keEA~kAi~aLn~c~L--g----~ttI~aeFAse~ev~~~~~~~ 139 (225)
+.|++.+.++| | .+.. .-.+.+|++.. .++..+.... +++.+ + ...|++-|++++|+.++++.+
T Consensus 288 ~~l~~~l~~~g-~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gi~v~~g~~~~~~~iRis~~~~~~i~~l~~~l 360 (365)
T 3get_A 288 ELYKEFAKKHN-I---KIIDSYTNFITYFFDEKNSTDLSEKLLK-KGIIIRNLKSYGLNAIRITIGTSYENEKFFTEF 360 (365)
T ss_dssp HHHHHHHHHTT-C---EECCCSSSEEEEECSSSCHHHHHHHHHT-TTEECEECGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-C---EECCCCCeEEEEECCCCCHHHHHHHHHH-CCEEEEECccCCCCEEEEEcCCHHHHHHHHHHH
Confidence 34455566663 2 2333 34466788763 4444333332 45322 2 356999999999999998865
No 273
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=33.92 E-value=41 Score=28.54 Aligned_cols=70 Identities=10% Similarity=0.050 Sum_probs=40.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
++|++=..-|-...-+ .|.+.|--+ ++-+.+.++++++.+.|...--.-..+.+++.++++|++++++
T Consensus 10 alVTGas~GIG~aiA~-~la~~Ga~V-----------v~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~ 77 (254)
T 4fn4_A 10 VIVTGAGSGIGRAIAK-KFALNDSIV-----------VAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRR 77 (254)
T ss_dssp EEEETTTSHHHHHHHH-HHHHTTCEE-----------EEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHH-HHHHcCCEE-----------EEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH
Confidence 4556655555444433 445555322 2233456666666666533111112378999999999999887
Q ss_pred hc
Q psy10308 139 LS 140 (225)
Q Consensus 139 ~~ 140 (225)
.-
T Consensus 78 ~~ 79 (254)
T 4fn4_A 78 TF 79 (254)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 274
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=32.31 E-value=82 Score=23.59 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=37.9
Q ss_pred EEecCCCCCcchhHHHHHHHhhCC-------eeEEEecCCCceEEEEeCCHHHHHHHHhhh-ccceecCceEEEeCCChH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGP-------LQNFHLYLNHSLALAKYSTREEAIKAQGNL-NNCILGNTTIFAEAPSDA 130 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGp-------V~tfhlnl~~G~AlVrYstkeEA~kAi~aL-n~c~Lg~ttI~aeFAse~ 130 (225)
||+=.|.+.++++++..++..+-. |+.|+++.+.. . . ++ -.--++++|++++
T Consensus 25 IVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-------~----------~~~g---~d~~l~~~F~s~e 84 (116)
T 3bgu_A 25 IALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-------L----------AAGN---YDFAVVADLDGED 84 (116)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-------C----------STTC---CSEEEEEEEEHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-------C----------CCCC---eeEEEEEEECCHH
Confidence 777888888888777777665433 44555543311 0 1 11 1222888999999
Q ss_pred HHHHHHHh
Q psy10308 131 EVQSLLAH 138 (225)
Q Consensus 131 ev~~~~~~ 138 (225)
+.+.|..|
T Consensus 85 dl~~Y~~h 92 (116)
T 3bgu_A 85 GFRAYQDH 92 (116)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 99888875
No 275
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=31.71 E-value=63 Score=24.04 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=31.2
Q ss_pred eEEEEeCCHHHHHHHHhhhccceecCceEEEeC--CChHHHHHHHHhhc
Q psy10308 94 LALAKYSTREEAIKAQGNLNNCILGNTTIFAEA--PSDAEVQSLLAHLS 140 (225)
Q Consensus 94 ~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeF--Ase~ev~~~~~~~~ 140 (225)
+.+++=.+.+||++..+.|- .+..+++.| .++++.+|+++=+.
T Consensus 7 Ivv~~P~sy~Da~~I~d~Lr----~~~~VvvNL~~ld~~~AqRivDF~s 51 (87)
T 3p04_A 7 IVPVELHSFEDAQVIGGAFR----DGDAVVFDMSLLSREEARRIVDFAA 51 (87)
T ss_dssp CEEEECSSGGGHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEecCcHHHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHhc
Confidence 56788888899998888875 355555555 45888899887653
No 276
>3k9d_A LMO1179 protein, aldehyde dehydrogenase; structural genomics, PSI-2, protein initiative; 2.00A {Listeria monocytogenes}
Probab=30.52 E-value=60 Score=29.68 Aligned_cols=54 Identities=13% Similarity=0.116 Sum_probs=35.9
Q ss_pred HhhCCeeEEEecCCCceEEEEeCCHHHHH-HHHhhhccceecCceEEEeCCChHHHHHHHHhhccc
Q psy10308 78 VQHGPLQNFHLYLNHSLALAKYSTREEAI-KAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSAT 142 (225)
Q Consensus 78 ~qhGpV~tfhlnl~~G~AlVrYstkeEA~-kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~~~ 142 (225)
..||||+. +++|++.|||. +|++.+|...++ -+..+--.+.+.+.+|.+++...
T Consensus 341 E~fgPVl~----------v~~~~~~~eAi~~ai~~~n~~~~g-l~a~i~t~d~~~a~~~~~~l~~G 395 (464)
T 3k9d_A 341 EKLAPILA----------FYTAETWQEACELSMDILYHEGAG-HTLIIHSEDKEIIREFALKKPVS 395 (464)
T ss_dssp CCCSSEEE----------EEEESSHHHHHHHHHHHHHHTTTE-EEEEEECSCHHHHHHHHHHSSEE
T ss_pred cccCceEE----------EEEeCCHHHHHHHHHHHHhcCCCC-CeEEEEeCCHHHHHHHHHhCCEe
Confidence 56788875 67899999995 456666755444 33333334567788888887654
No 277
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=30.24 E-value=41 Score=26.76 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=24.2
Q ss_pred ccceecCceEEEeCCChHHHHHHHHhhcc
Q psy10308 113 NNCILGNTTIFAEAPSDAEVQSLLAHLSA 141 (225)
Q Consensus 113 n~c~Lg~ttI~aeFAse~ev~~~~~~~~~ 141 (225)
...+|++..++..||+++|.+.|-.++..
T Consensus 76 ~litlg~~slLl~Fas~~d~~~F~~~l~k 104 (117)
T 2oqb_A 76 FIITLGCNSVLIQFATPHDFCSFYNILKT 104 (117)
T ss_dssp EEEEETTEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEECCcEEEEEeCCHHHHHHHHHHHHH
Confidence 33678999999999999999999777643
No 278
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450 8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio} PDB: 3b99_A*
Probab=29.88 E-value=40 Score=28.95 Aligned_cols=36 Identities=11% Similarity=0.021 Sum_probs=24.0
Q ss_pred hhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHH
Q psy10308 70 GSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEA 105 (225)
Q Consensus 70 e~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA 105 (225)
...++.+..+||||..+++....-+.+..|+..+|+
T Consensus 41 ~~~~~~l~~~yG~v~~~~~g~~~~vvv~~~~~~~~i 76 (475)
T 3b98_A 41 AKFLTRMKEKHGDIFTVRAAGLYITVLLDSNCYDAV 76 (475)
T ss_dssp HHHHHHHHHHHCSEEEEEETTEEEEEECCTTTHHHH
T ss_pred HHHHHHHHHHhCCeEEEEECCceEEEEeCHHHHHHH
Confidence 467889999999999988854333333355554443
No 279
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural genomics, protein structure initiative, dehydroge PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Probab=29.76 E-value=1.1e+02 Score=28.57 Aligned_cols=66 Identities=20% Similarity=0.235 Sum_probs=41.0
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
-+|.|+++.+.-- ++ ..||||+. +++|++.|||.+-+ |....+= +..|--.+.+.+.+|.++
T Consensus 371 Tvl~~v~~~~~i~--~e--EiFGPVl~----------V~~~~~~deAi~~a---N~~~~gL-~a~v~t~d~~~a~~~~~~ 432 (505)
T 3prl_A 371 TLLDDVTPAMRVA--WE--EPFGPVLP----------IIRVKDANEAISLS---NQSDYGL-QASIFTKDTDRAINIGKH 432 (505)
T ss_dssp EEEESCCTTSGGG--TS--CCCSSEEE----------EEEESSHHHHHHHH---HTSSEES-EEEEECSCHHHHHHHHHT
T ss_pred eEeecCCCCChhh--cC--CccCcEEE----------EEEeCCHHHHHHHH---hCCCCCe-EEEEEcCCHHHHHHHHHH
Confidence 4788888875421 11 45799976 56889888875544 5444442 222223356778888888
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 433 l~aG 436 (505)
T 3prl_A 433 LEVG 436 (505)
T ss_dssp SCSS
T ss_pred CCee
Confidence 8654
No 280
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans}
Probab=29.10 E-value=1.7e+02 Score=25.91 Aligned_cols=77 Identities=10% Similarity=0.019 Sum_probs=47.0
Q ss_pred cceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHh-hhccceecCceEEEeCCC------
Q psy10308 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQG-NLNNCILGNTTIFAEAPS------ 128 (225)
Q Consensus 56 ~~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~-aLn~c~Lg~ttI~aeFAs------ 128 (225)
-+|+|+ + .+.+=+.. ..+=.++|||.++-|.|..+++- ..|++|.+.+. .|......+..+.|.+-.
T Consensus 23 ~~~~~~-~-~~~~~eka-~~~gaD~~pv~~vilDLEDaVap---~~K~~Ar~~v~~~L~~~~~~~~~~~VRIN~~dt~~~ 96 (339)
T 3r4i_A 23 ACDHYA-G-SEKLMLKS-LALQQQLGPVFDITLDCEDGAQV---GREAQHAELVASLLGSEHDRFGRVGVRIHDFDHAHW 96 (339)
T ss_dssp SEEEEE-C-SHHHHHHH-HHHHHHHCTTEEEEEESSTTSCS---SCHHHHHHHHHHHTTSSSCCSSCEEEECCCTTSTTH
T ss_pred HHHhhC-C-CHHHHHHH-HhCCCCcCCCCcEEEECCCCCCC---CCHHHHHHHHHHHHhcccccCCeEEEEECCCCccHH
Confidence 468888 2 23332222 23346779999999999999874 56888876653 344444455556666643
Q ss_pred hHHHHHHHHh
Q psy10308 129 DAEVQSLLAH 138 (225)
Q Consensus 129 e~ev~~~~~~ 138 (225)
+.|+..++..
T Consensus 97 ~~DL~al~~~ 106 (339)
T 3r4i_A 97 RDDVRLILRA 106 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhhh
Confidence 3455555543
No 281
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence, kinetics, oxidor; 2.10A {Escherichia coli} SCOP: c.82.1.1 PDB: 1wnb_A
Probab=29.00 E-value=1.8e+02 Score=26.87 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=40.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
-+|.++++++. .+++ .-||||+. +++|++.|||.+-+ |....+ -+..+---+.+.+.+|.++
T Consensus 384 Tvl~~v~~~~~--i~~e--EiFGPVl~----------v~~~~~~deAi~~a---N~~~~g-L~a~v~t~d~~~a~~~~~~ 445 (495)
T 1wnd_A 384 TLLAGALQDDA--IVQK--EVFGPVVS----------VTPFDNEEQVVNWA---NDSQYG-LASSVWTKDVGRAHRVSAR 445 (495)
T ss_dssp EEEECCCTTSH--HHHS--CCCSSEEE----------EEEECCHHHHHHHH---HSSSCC-SEEEEECSBHHHHHHHHHH
T ss_pred EEEeCCCCCCh--hhhc--cccCceEE----------EEEeCCHHHHHHHH---hcCCCC-eeEEEECCCHHHHHHHHHh
Confidence 47788877642 1111 46999986 56888888765544 545444 2333333456778899888
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 446 l~aG 449 (495)
T 1wnd_A 446 LQYG 449 (495)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 8543
No 282
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=28.96 E-value=35 Score=27.53 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=6.2
Q ss_pred chhHHHHHHHhhC
Q psy10308 69 DGSTLKTLCVQHG 81 (225)
Q Consensus 69 de~tLr~Lc~qhG 81 (225)
+.+.+++++..||
T Consensus 189 ~~~~~~~l~~~~~ 201 (269)
T 1cp2_A 189 EYELLDAFAKELG 201 (269)
T ss_dssp CHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcC
Confidence 3444445555554
No 283
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.87 E-value=8.2 Score=30.88 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=20.6
Q ss_pred hHHHHHHHhhCCeeEEEecCCCceEEEEeC
Q psy10308 71 STLKTLCVQHGPLQNFHLYLNHSLALAKYS 100 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs 100 (225)
+++.+|+...|.|+-|. ..+||+||.-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeC
Confidence 45667788889888775 88999999976
No 284
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.82 E-value=79 Score=21.62 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=26.7
Q ss_pred chhHHHHHHHhhC-CeeEEEe-cCCCceEEEEeCCHHHHHHHHhhh
Q psy10308 69 DGSTLKTLCVQHG-PLQNFHL-YLNHSLALAKYSTREEAIKAQGNL 112 (225)
Q Consensus 69 de~tLr~Lc~qhG-pV~tfhl-nl~~G~AlVrYstkeEA~kAi~aL 112 (225)
+.+++..++.++| || -++. .-..|..+.+..+.+|+++|++.+
T Consensus 33 ~~~~~~~~~~~~~~P~-vvKp~~~~~~~gv~~v~~~~el~~~~~~~ 77 (108)
T 2cqy_A 33 DAEEAVRIAREIGYPV-MIKASAGGGGKGMRIAWDDEETRDGFRLS 77 (108)
T ss_dssp SHHHHHHHHHHHCSSE-EEEETTSCCTTTCEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCE-EEEECCCCCCccEEEeCCHHHHHHHHHHH
Confidence 4566777777777 54 3333 233333344457899999988765
No 285
>2a1i_A DNA excision repair protein ERCC-1; XPF, central domain, DNA repair, endonuclease, DNA binding protein; HET: DNA; 1.90A {Homo sapiens} SCOP: c.52.1.20 PDB: 2jnw_A* 2jpd_A*
Probab=28.70 E-value=23 Score=29.02 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=33.9
Q ss_pred EEEeCCHHHHHHHHhhhcc-ceecCceEEEeCCChHHHHHHHHhhc
Q psy10308 96 LAKYSTREEAIKAQGNLNN-CILGNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 96 lVrYstkeEA~kAi~aLn~-c~Lg~ttI~aeFAse~ev~~~~~~~~ 140 (225)
|+.+-+.++.+.++..|+. |.+.+-||++-| +.+|+++||+-.-
T Consensus 88 LL~~VDv~d~~~~L~eL~~~c~~~~~TLiLaw-S~eEaa~Yle~~k 132 (146)
T 2a1i_A 88 LLVQVDVKDPQQALKELAKMCILADCTLILAW-SPEEAGRYLETYK 132 (146)
T ss_dssp EEEECCSSSCHHHHHHHHHHHHHHTCEEEEES-SHHHHHHHHHHHH
T ss_pred EEEEEeCCChHHHHHHHHHHHHHcCCEEEEEC-CHHHHHHHHHHHH
Confidence 4444555567899999987 899999988777 5778999998654
No 286
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=28.29 E-value=41 Score=25.65 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=36.7
Q ss_pred CeeEEEecC-CCceEEEEeCCHHHHHHHHhhhccceec-CceEEEeCCChHHHHHHHH
Q psy10308 82 PLQNFHLYL-NHSLALAKYSTREEAIKAQGNLNNCILG-NTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 82 pV~tfhlnl-~~G~AlVrYstkeEA~kAi~aLn~c~Lg-~ttI~aeFAse~ev~~~~~ 137 (225)
+|.++..-. -+||.||+=....+...|++.+-++... -...+|.+ +|+..||.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v~~~~~~~~lVpi---~Em~~~L~ 94 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNLRLGYWNQQMVPI---KEMTDVLK 94 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGGGGGSSCCEECCG---GGTTGGGC
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccceecccccceEEcH---HHHHHhcC
Confidence 466666533 3999999999999999999988765432 12244555 56666654
No 287
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=28.04 E-value=36 Score=28.96 Aligned_cols=71 Identities=7% Similarity=0.037 Sum_probs=40.8
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
++|++=..-|-.. +-..|.+.|-= .+|-|.+.++++++.+.|...-..-..+.+++.++++|++++++
T Consensus 12 alVTGas~GIG~a-ia~~la~~Ga~-----------Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~ 79 (255)
T 4g81_D 12 ALVTGSARGLGFA-YAEGLAAAGAR-----------VILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSK 79 (255)
T ss_dssp EEETTCSSHHHHH-HHHHHHHTTCE-----------EEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHH
T ss_pred EEEeCCCcHHHHH-HHHHHHHCCCE-----------EEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHH
Confidence 4555555555433 34445555521 23445566666666666643211122377899999999999887
Q ss_pred hcc
Q psy10308 139 LSA 141 (225)
Q Consensus 139 ~~~ 141 (225)
.-.
T Consensus 80 ~~~ 82 (255)
T 4g81_D 80 LDA 82 (255)
T ss_dssp HHH
T ss_pred HHH
Confidence 744
No 288
>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG, structural genomics, midwest center for STR genomics; 2.30A {Vibrio parahaemolyticus}
Probab=27.87 E-value=68 Score=29.19 Aligned_cols=55 Identities=9% Similarity=-0.005 Sum_probs=30.5
Q ss_pred HhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChH---HHHHHHHhhccc
Q psy10308 78 VQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDA---EVQSLLAHLSAT 142 (225)
Q Consensus 78 ~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~---ev~~~~~~~~~~ 142 (225)
..||||+. +++|++.|||.+-+..+...-=.+-+..+--.+++ .|.+|.+++...
T Consensus 336 E~FgPVl~----------v~~~~~~~eAi~~an~~~~~~g~Glta~i~t~d~~~a~~i~~~a~~l~~G 393 (452)
T 3my7_A 336 EKLSPTLG----------MFRADNFEDAVAQAVTMVEIGGIGHTSGLYTNQDVNADRIRYFGDKMKTA 393 (452)
T ss_dssp CCSSSEEE----------EEEESSHHHHHHHHHHHHHHHSSCCEEEEESCTTTCHHHHHHHHHHCCCS
T ss_pred CccCcEEE----------EEEeCCHHHHHHHHHhcccccCCCCEEEEEcCCHHHHHHHHHHHHhCCEE
Confidence 67999986 56888888876655443100002344333333333 344488877654
No 289
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.80 E-value=1.5e+02 Score=23.29 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=43.4
Q ss_pred CCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHH----HHHHHhhcc
Q psy10308 66 PQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV----QSLLAHLSA 141 (225)
Q Consensus 66 pQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev----~~~~~~~~~ 141 (225)
.-.||++||.+-. | -..+||-.-...+.+|....|..| +.-.|.||+|-..++.|- .||+..++.
T Consensus 8 fstdeetlrkfkd----i-----ikkngfkvrtvrspqelkdsieel--vkkynativvvvvddkewaekairfvkslga 76 (134)
T 2l69_A 8 FSTDEETLRKFKD----I-----IKKNGFKVRTVRSPQELKDSIEEL--VKKYNATIVVVVVDDKEWAEKAIRFVKSLGA 76 (134)
T ss_dssp CCCCHHHHHHHHH----H-----HHHTTCEEEEECSHHHHHHHHHHH--TTCCCCEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred EeCCHHHHHHHHH----H-----HHhcCceEEEecCHHHHHHHHHHH--HHHhCCeEEEEEEccHHHHHHHHHHHHhcCC
Confidence 3568999886432 1 123667666777888888888876 345677777777776553 577777654
No 290
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=26.36 E-value=1.4e+02 Score=22.54 Aligned_cols=60 Identities=13% Similarity=0.003 Sum_probs=38.3
Q ss_pred EEecCCCCCcchhHHHHHHH-------hhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCV-------QHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAE 131 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~-------qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~e 131 (225)
||+=.|.+.++++++++++. +---|+.|+++.+..- -+. -.--++++|+++++
T Consensus 24 IVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~-----------------~~~---~d~~l~~~F~s~ed 83 (120)
T 3bde_A 24 TVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISP-----------------KID---YHFGFSMEFADQAA 83 (120)
T ss_dssp EEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCS-----------------SSC---CCEEEEEEESSHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCC-----------------CCC---ccEEEEEEECCHHH
Confidence 66667777777666555553 4455777777655221 011 33348899999999
Q ss_pred HHHHHHh
Q psy10308 132 VQSLLAH 138 (225)
Q Consensus 132 v~~~~~~ 138 (225)
.+.|..|
T Consensus 84 l~~Y~~H 90 (120)
T 3bde_A 84 YTRYNDH 90 (120)
T ss_dssp HHHHHTS
T ss_pred HHHHhCC
Confidence 9888765
No 291
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=25.85 E-value=92 Score=25.90 Aligned_cols=81 Identities=9% Similarity=-0.013 Sum_probs=43.7
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCC-eeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGP-LQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGp-V~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
.++|++-+.-|-....+.| .+.|- |+-+..+....-.-+...+.++++++.+.+....-.-..+.+++.++++|++++
T Consensus 30 ~~lVTGas~GIG~aia~~l-a~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 108 (299)
T 3t7c_A 30 VAFITGAARGQGRSHAITL-AREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQAAV 108 (299)
T ss_dssp EEEEESTTSHHHHHHHHHH-HHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHH-HHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHH
Confidence 6788888877766655554 45553 222221111000111223456666655554321111134788999999999988
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
++.
T Consensus 109 ~~~ 111 (299)
T 3t7c_A 109 DDG 111 (299)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 292
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}
Probab=25.59 E-value=1.3e+02 Score=23.39 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=45.3
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
-|.|.+++=.-....++....+.--|..+.+++..+.+.|+|.. .++..++|..+
T Consensus 23 ~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 81 (202)
T 2rop_A 23 QLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81 (202)
T ss_dssp EEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 47889998888888999999998889999999999999999974 35556666654
No 293
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.41 E-value=1.8e+02 Score=27.25 Aligned_cols=17 Identities=24% Similarity=0.671 Sum_probs=7.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q psy10308 166 KDTWSSGGGGGNTSQLW 182 (225)
Q Consensus 166 ~~~W~~~~~~~~~~~lw 182 (225)
.+.|+.+..+.++++-|
T Consensus 304 ~g~w~pGs~~pgs~g~w 320 (390)
T 1deq_A 304 AGTWNPGRPEPGSAGTW 320 (390)
T ss_pred CCCCCCCCCCCCCCCCC
Confidence 34555443333333334
No 294
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=25.29 E-value=83 Score=25.62 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=42.4
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCee-EEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQ-NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~-tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
.++|++=+--|-....+. |.+.|--+ -+..+......-..+.+.+++++..+.+....-.-..+.+++.++++|.+++
T Consensus 12 ~~lVTGas~gIG~a~a~~-l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~ 90 (281)
T 3s55_A 12 TALITGGARGMGRSHAVA-LAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALESFV 90 (281)
T ss_dssp EEEEETTTSHHHHHHHHH-HHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCchHHHHHHHH-HHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHH
Confidence 578888777775555544 45556321 1111111111111123456666555544321111123778999999999998
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
++.
T Consensus 91 ~~~ 93 (281)
T 3s55_A 91 AEA 93 (281)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 295
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=24.96 E-value=1.3e+02 Score=25.99 Aligned_cols=34 Identities=15% Similarity=0.177 Sum_probs=22.7
Q ss_pred hhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHH
Q psy10308 70 GSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAI 106 (225)
Q Consensus 70 e~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~ 106 (225)
...|++++.+||||+.+++. |.-+|-..+.+.++
T Consensus 34 ~~~~~~~~~kYG~i~~~~~~---~~~~vvv~~~~~i~ 67 (461)
T 3ld6_A 34 IEFLENAYEKYGPVFSFTMV---GKTFTYLLGSDAAA 67 (461)
T ss_dssp HHHHHHHHHHHCSEEEEEET---TEEEEEECSHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEEC---CccEEEEeCHHHHH
Confidence 35689999999999988874 22244445555333
No 296
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=24.90 E-value=1.6e+02 Score=22.09 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=36.0
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCe------eEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCc-eEEEeCCChHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPL------QNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNT-TIFAEAPSDAE 131 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV------~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~t-tI~aeFAse~e 131 (225)
||+=.|.+.+++++.++++..+-.+ +.|+++.+... ..| ..+ .-+-+ -++++|+++++
T Consensus 24 IVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~-----e~R-------~~~---~~g~d~~l~~~F~s~ed 88 (120)
T 3bn7_A 24 QVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAAT-----EKR-------DVV---DNSYDVSELMVFKSVED 88 (120)
T ss_dssp EEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCC-----CCC-------TTC---CCCCSEEEEEEESSHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCc-----ccc-------ccc---CCCccEEEEEEECCHHH
Confidence 6666777777777666666554433 33333322100 000 011 11222 28999999999
Q ss_pred HHHHHHh
Q psy10308 132 VQSLLAH 138 (225)
Q Consensus 132 v~~~~~~ 138 (225)
.+.|..|
T Consensus 89 l~~Y~~H 95 (120)
T 3bn7_A 89 QKRYRDH 95 (120)
T ss_dssp HHHHHTC
T ss_pred HHHHhCC
Confidence 9999765
No 297
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A*
Probab=24.61 E-value=1.7e+02 Score=27.00 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=38.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
-+|.|+++++ ..+++ ..||||+. +++|++.|||.+-+ |....+ -+..+--.+.+.+.+|.+
T Consensus 385 Tvl~~v~~~~--~i~~e--EiFGPVl~----------v~~~~~~deAi~~a---N~~~~g-L~a~v~t~d~~~a~~~~~ 445 (500)
T 2j6l_A 385 TIVTGLGHDA--SIAHT--ETFAPILY----------VFKFQNEEEVFAWN---NEVKQG-LSSSIFTKDLGRIFRWLG 445 (500)
T ss_dssp EEEESCCTTC--HHHHS--CCSSSEEE----------EEEECCHHHHHHHH---HTSSCC-SEEEEECCCHHHHHHHHS
T ss_pred EEEECCCCcC--hhhcC--cccCceEE----------EEeeCCHHHHHHHH---hCCCCC-cEEEEECCCHHHHHHHHh
Confidence 3788888753 22222 56999986 56888888766544 444443 344443455677788883
No 298
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=24.00 E-value=1.4e+02 Score=27.24 Aligned_cols=66 Identities=23% Similarity=0.288 Sum_probs=41.3
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
.+|.++++.+.--. + .-||||+. +++|++.|||.+ ..|....+= +..|--.+.+.+.+|..+
T Consensus 349 tv~~~v~~~~~i~~--e--EiFGPVl~----------v~~~~~~deAi~---~aN~~~~GL-~a~v~t~d~~~a~~~a~~ 410 (474)
T 4h7n_A 349 TVMTNVNHSMKVMT--E--ETFGPIMP----------VMPFPDVEEAVY---LANDTIYGL-SAAVFAGSEDEALKVARQ 410 (474)
T ss_dssp EEEESCCTTSGGGT--S--CCCSSEEE----------EEEESSHHHHHH---HHHCSSCCS-EEEEECSSHHHHHHHHTT
T ss_pred eeEEeecccccccc--c--cccCcEEE----------EEEECCHHHHHH---HHHcCCCCC-eEEEEeCCHHHHHHHHHh
Confidence 37788887654211 0 23899975 668898887654 445555543 333334567788888888
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 411 l~aG 414 (474)
T 4h7n_A 411 LNAG 414 (474)
T ss_dssp SCCS
T ss_pred CCee
Confidence 7543
No 299
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=23.07 E-value=1.4e+02 Score=21.31 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=36.2
Q ss_pred hhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhc-c------ceecCceEEEeCCChHHHHHHHHhhcc
Q psy10308 70 GSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLN-N------CILGNTTIFAEAPSDAEVQSLLAHLSA 141 (225)
Q Consensus 70 e~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn-~------c~Lg~ttI~aeFAse~ev~~~~~~~~~ 141 (225)
...++.++.+.|= .| -.|.-+..+||.+.+..++ | +.+++-++++.| +.+||.+.|+++..
T Consensus 17 C~~aK~~L~~~gi--~y--------~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~-~~~el~~~L~el~g 84 (92)
T 2lqo_A 17 CLRLKTALTANRI--AY--------DEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNP-SADEVKAKLVKIAG 84 (92)
T ss_dssp HHHHHHHHHHTTC--CC--------EEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESC-CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCC--ce--------EEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCC-CHHHHHHHHHHhcC
Confidence 4456666666541 11 1222334455666555554 3 246677788887 67889999988753
No 300
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=23.02 E-value=1.9e+02 Score=23.59 Aligned_cols=54 Identities=9% Similarity=0.153 Sum_probs=39.2
Q ss_pred EEecCCCCCcchh---HHHHHHHhhCCeeEEEe-cCCCceEEEEe--CCHHHHHHHHhhh
Q psy10308 59 VLLKNLTPQIDGS---TLKTLCVQHGPLQNFHL-YLNHSLALAKY--STREEAIKAQGNL 112 (225)
Q Consensus 59 LvL~NLtpQide~---tLr~Lc~qhGpV~tfhl-nl~~G~AlVrY--stkeEA~kAi~aL 112 (225)
|+|+++++|+..+ .-..|-.+|-=-+++.+ +...|+..|+| ++.|--+||.+.|
T Consensus 45 i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkem 104 (170)
T 4hhu_A 45 IVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEM 104 (170)
T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHH
T ss_pred EEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHH
Confidence 7889999997643 33445666665566665 67799999998 4677778888776
No 301
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.78 E-value=2.3e+02 Score=26.58 Aligned_cols=29 Identities=21% Similarity=0.602 Sum_probs=13.1
Q ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10308 155 GWARGSSALSNKDTWSSGGGGGNTSQLWG 183 (225)
Q Consensus 155 ~~~~~~~~~~~~~~W~~~~~~~~~~~lwg 183 (225)
.|..+.+.....++|+.+..+-++++.|+
T Consensus 306 ~w~pGs~~pgs~g~w~~Gs~~pg~~g~~~ 334 (390)
T 1deq_A 306 TWNPGRPEPGSAGTWNPGRPEPGSAGTWN 334 (390)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 34443333334456766543333344444
No 302
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=22.74 E-value=1e+02 Score=24.85 Aligned_cols=81 Identities=16% Similarity=0.058 Sum_probs=40.9
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCC-eeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGP-LQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGp-V~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
.++|++-+--|-....+.| .+.|- |+-+..+....-.-....+.++++++...+......-..+.+++.++++|.+++
T Consensus 12 ~vlVTGas~gIG~~ia~~l-~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 90 (287)
T 3pxx_A 12 VVLVTGGARGQGRSHAVKL-AEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSREL 90 (287)
T ss_dssp EEEEETTTSHHHHHHHHHH-HHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCChHHHHHHHHH-HHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHH
Confidence 5788888877766555554 45553 221111110000000112345555544443221111124778999999998888
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
++.
T Consensus 91 ~~~ 93 (287)
T 3pxx_A 91 ANA 93 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 303
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=22.68 E-value=2.3e+02 Score=21.99 Aligned_cols=63 Identities=8% Similarity=0.074 Sum_probs=38.8
Q ss_pred hHHHHHHHhhCCeeEEEecCCCceEEEEeCCH--HHHHHHHhhh-ccceecCceEEEeCCChHHHHHHHHhhc
Q psy10308 71 STLKTLCVQHGPLQNFHLYLNHSLALAKYSTR--EEAIKAQGNL-NNCILGNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstk--eEA~kAi~aL-n~c~Lg~ttI~aeFAse~ev~~~~~~~~ 140 (225)
..+++++.++ .+.-.+-+.|+-|... .+|.+.++.+ .++.+. ..+.++..+++||..+|+++.
T Consensus 104 ~~~~~fl~~~------~l~gk~v~~f~t~g~~~~g~a~~~l~~~l~~~~~~-~g~~~~~~~~~~i~~Wl~~~~ 169 (171)
T 4ici_A 104 RIINTFIEGH------SLKGKTVVPFATSGGSSIGNSATVLKKTYPDLNWK-EGRLLNRTDEKAIRAWLDVIA 169 (171)
T ss_dssp HHHHHHHHHS------CCTTSEEEEEEECSSCCSHHHHHHHHHHSTTSEEC-CCEECSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHc------CCCcCEEEEEEecCCCCcchHHHHHHHHcCCCeec-cCeEecCCCHHHHHHHHHHhC
Confidence 4577777765 2223345667777533 5555555443 555553 346667778999999999863
No 304
>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A
Probab=22.50 E-value=1.4e+02 Score=18.18 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=39.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeC-CHHHHHHHHhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS-TREEAIKAQGN 111 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs-tkeEA~kAi~a 111 (225)
+.|.+++-.-....++....+.--|..+.+++..+.+.|.-. +.++..+++..
T Consensus 4 ~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~ 57 (66)
T 2roe_A 4 LKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEE 57 (66)
T ss_dssp EEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHT
T ss_pred EEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHH
Confidence 567888887788888888888888999999999888888211 23444555544
No 305
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=22.46 E-value=2.7e+02 Score=23.37 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=31.7
Q ss_pred CCceEEEEeCCHHHHHHHHhhh--cccee----------cCceEEEeCC---ChHHHHHHHHhhc
Q psy10308 91 NHSLALAKYSTREEAIKAQGNL--NNCIL----------GNTTIFAEAP---SDAEVQSLLAHLS 140 (225)
Q Consensus 91 ~~G~AlVrYstkeEA~kAi~aL--n~c~L----------g~ttI~aeFA---se~ev~~~~~~~~ 140 (225)
.-.+..|++...+++++..+.| +++.+ +...|++-+. +++||.++++-+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~ 398 (409)
T 3kki_A 334 ESQIIGLETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCS 398 (409)
T ss_dssp SSSEEEEEEESHHHHHHHHHHHHHTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHH
Confidence 3455667777665555444444 34333 2345888886 8999999887653
No 306
>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*
Probab=21.83 E-value=2.4e+02 Score=22.57 Aligned_cols=72 Identities=11% Similarity=0.054 Sum_probs=42.0
Q ss_pred ceEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHH
Q psy10308 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLL 136 (225)
Q Consensus 57 ~wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~ 136 (225)
..++|++=+--|-....+.| .+.|--+- ++-..+.++++++++.+....-.-..+.+++.++++|.+++
T Consensus 27 k~vlVTGas~gIG~~la~~l-~~~G~~v~----------i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~ 95 (267)
T 4iiu_A 27 RSVLVTGASKGIGRAIARQL-AADGFNIG----------VHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVL 95 (267)
T ss_dssp CEEEETTTTSHHHHHHHHHH-HHTTCEEE----------EEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHH-HHCCCEEE----------EEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 36888888877766555554 44553211 11223455555555554221111234788999999999988
Q ss_pred Hhh
Q psy10308 137 AHL 139 (225)
Q Consensus 137 ~~~ 139 (225)
++.
T Consensus 96 ~~~ 98 (267)
T 4iiu_A 96 EHE 98 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 864
No 307
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=21.79 E-value=1e+02 Score=25.23 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=26.0
Q ss_pred CHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhhc
Q psy10308 101 TREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 101 tkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~ 140 (225)
..+|+++.++.+++.. -..+.+++.++++|++++++.-
T Consensus 44 ~~~~~~~~~~~~~~~~--~~~~~~Dv~~~~~v~~~~~~~~ 81 (256)
T 4fs3_A 44 SRKELEKLLEQLNQPE--AHLYQIDVQSDEEVINGFEQIG 81 (256)
T ss_dssp GHHHHHHHHGGGTCSS--CEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCc--EEEEEccCCCHHHHHHHHHHHH
Confidence 3566666666665421 2347789999999999888654
No 308
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=21.72 E-value=70 Score=24.39 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=23.5
Q ss_pred EecCCCCCcchhHHHH-HHHhhCCeeEEEe
Q psy10308 60 LLKNLTPQIDGSTLKT-LCVQHGPLQNFHL 88 (225)
Q Consensus 60 vL~NLtpQide~tLr~-Lc~qhGpV~tfhl 88 (225)
+|.+||++.+..|+-. ||...|.-..|+|
T Consensus 20 ~VsGvT~~TTC~DVV~aL~~~~G~~~~y~L 49 (95)
T 2cs4_A 20 IVCGVTEVTTCQEVVIALAQAIGRTGRYTL 49 (95)
T ss_dssp CCSSBCSSSCHHHHHHHHHHHHSCCSEEEE
T ss_pred EEECCCCCCcHHHHHHHHHhccCCCccEEE
Confidence 6789999999888777 7787787777776
No 309
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=21.70 E-value=3.2e+02 Score=22.15 Aligned_cols=68 Identities=6% Similarity=-0.149 Sum_probs=39.3
Q ss_pred HHHHHHHhhCCeeEEEecC-CC-c-eEEEEeCCHHHHHHHHhhh--cccee-cC----ceEEEeCC---ChHHHHHHHHh
Q psy10308 72 TLKTLCVQHGPLQNFHLYL-NH-S-LALAKYSTREEAIKAQGNL--NNCIL-GN----TTIFAEAP---SDAEVQSLLAH 138 (225)
Q Consensus 72 tLr~Lc~qhGpV~tfhlnl-~~-G-~AlVrYstkeEA~kAi~aL--n~c~L-g~----ttI~aeFA---se~ev~~~~~~ 138 (225)
.|++.+.+++.+..+.... .+ + +..+++....++++-++.| +++.+ .+ ..|++-|. +++||.++++.
T Consensus 273 ~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~iRis~~~~~~~~~i~~~~~~ 352 (360)
T 1w23_A 273 IIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQFLAKAKEQGFVGLNGHRSVGGCRASIYNAVPIDACIALREL 352 (360)
T ss_dssp HHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHccCcccccCCchhccCcEEEEEcCCCccHHHHHHHHHHCCeeeecCCCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 3455556666543332112 12 4 6777877654555544444 44322 12 35999997 89999998876
Q ss_pred h
Q psy10308 139 L 139 (225)
Q Consensus 139 ~ 139 (225)
+
T Consensus 353 l 353 (360)
T 1w23_A 353 M 353 (360)
T ss_dssp H
T ss_pred H
Confidence 5
No 310
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=21.64 E-value=2.2e+02 Score=20.14 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=43.1
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCC----HHHHHHHHhhh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYST----REEAIKAQGNL 112 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYst----keEA~kAi~aL 112 (225)
|.|.+++=.-....++....+.--|..+.+++..+.+.|+|.. .++..++++.+
T Consensus 8 ~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 65 (149)
T 2ew9_A 8 LQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDL 65 (149)
T ss_dssp EEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcC
Confidence 6788888888888899988888889999999999999999953 34555666544
No 311
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=21.62 E-value=1.7e+02 Score=28.43 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=48.3
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeC----CHHHHHHHHhhhc
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS----TREEAIKAQGNLN 113 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYs----tkeEA~kAi~aLn 113 (225)
-+.|.+++-.-+...++....+.--|..+++|+..+-+.|+|+ +.++-.+|++.+.
T Consensus 5 ~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~G 64 (723)
T 3j09_A 5 TVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLG 64 (723)
T ss_dssp EEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHC
T ss_pred EEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcC
Confidence 4678899988889999999999999999999999999999996 3567777777653
No 312
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=21.60 E-value=1.6e+02 Score=25.16 Aligned_cols=36 Identities=11% Similarity=-0.118 Sum_probs=25.2
Q ss_pred hHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHH
Q psy10308 71 STLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQ 109 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi 109 (225)
..+++++.+||||+.+++... -.|-.++.+-++...
T Consensus 36 ~~~~~l~~kYG~i~~~~~g~~---~~vvv~dp~~~~~il 71 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLGNV---ESVYVIDPEDVALLF 71 (487)
T ss_dssp HHHHHHHHHHCSEEEEEETTE---EEEEECCHHHHHHHH
T ss_pred HHHHHHHHHcCceeeccCCCC---CEEEEcCHHHHHHHH
Confidence 568899999999999987532 245566666554433
No 313
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=21.33 E-value=2.9e+02 Score=22.18 Aligned_cols=71 Identities=4% Similarity=-0.033 Sum_probs=41.6
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.++|++=+--|-....+.| .+.|-- +.++.....+++++.++.+....-.-..+.+++.++++|.++++
T Consensus 27 ~vlITGas~gIG~~~a~~l-~~~G~~----------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (269)
T 3gk3_A 27 VAFVTGGMGGLGAAISRRL-HDAGMA----------VAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAE 95 (269)
T ss_dssp EEEETTTTSHHHHHHHHHH-HTTTCE----------EEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHH-HHCCCE----------EEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence 5788888877766655555 444532 12222245555555554443211112347789999999999888
Q ss_pred hh
Q psy10308 138 HL 139 (225)
Q Consensus 138 ~~ 139 (225)
+.
T Consensus 96 ~~ 97 (269)
T 3gk3_A 96 KV 97 (269)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 314
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=21.19 E-value=32 Score=23.61 Aligned_cols=22 Identities=14% Similarity=0.283 Sum_probs=16.3
Q ss_pred HhhCCeeEEEecCCCceEEEEeCC
Q psy10308 78 VQHGPLQNFHLYLNHSLALAKYST 101 (225)
Q Consensus 78 ~qhGpV~tfhlnl~~G~AlVrYst 101 (225)
|..|.|+-|. ..+||.||+-+.
T Consensus 1 m~~G~Vk~fn--~~kGfGFI~~~~ 22 (66)
T 1c9o_A 1 MQRGKVKWFN--NEKGYGFIEVEG 22 (66)
T ss_dssp CEEEEEEEEE--TTTTEEEEEETT
T ss_pred CCceEEEEEE--CCCCeEEEecCC
Confidence 3457777664 789999998764
No 315
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome P450, endoplasmic reticulum, fatty acid biosynthesis, heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo sapiens} PDB: 2iag_A*
Probab=21.15 E-value=60 Score=28.22 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=17.8
Q ss_pred hhHHHHHHHhhCCeeEEEecC
Q psy10308 70 GSTLKTLCVQHGPLQNFHLYL 90 (225)
Q Consensus 70 e~tLr~Lc~qhGpV~tfhlnl 90 (225)
...+++++.+||+|+.+++..
T Consensus 41 ~~~~~~l~~kYG~i~~v~lg~ 61 (498)
T 3b6h_A 41 ASFLTRMKEKHGDIFTILVGG 61 (498)
T ss_dssp HHHHHHHHHHHCSEEEEEETT
T ss_pred HHHHHHHHHHcCCeEEEEECC
Confidence 467899999999999998854
No 316
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=21.12 E-value=1.9e+02 Score=26.74 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=41.3
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
-+|.|+++.+. -+++ ..||||+. +++|++.|||.+ .+|....+ -+..|---+.+.+.+|.++
T Consensus 378 Tvl~~v~~~~~--i~~e--EiFGPVl~----------v~~~~~~deAi~---~aN~~~~g-L~a~v~t~d~~~a~~~~~~ 439 (503)
T 3iwj_A 378 TIITDVTTNMQ--IWRE--EVFGPVLC----------VKTFSTEEEAID---LANDTVYG-LGAAVISNDLERCERVTKA 439 (503)
T ss_dssp EEEESCCTTSH--HHHS--CCCSSEEE----------EEEESSHHHHHH---HHTCSSCC-SEEEEECSCHHHHHHHHHH
T ss_pred eeeecCCCCch--hhCc--eeeCceEE----------EEEeCCHHHHHH---HHhCCCCC-cEEEEECCCHHHHHHHHHh
Confidence 47788887642 1111 46999987 568888887654 44555544 2333333467778889888
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 440 l~aG 443 (503)
T 3iwj_A 440 FKAG 443 (503)
T ss_dssp CCSS
T ss_pred CCcc
Confidence 8654
No 317
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=21.08 E-value=1.1e+02 Score=25.16 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=43.0
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.++|++=+--|-....+.| .+.|--+ ++-..+.+.+++..+.+......-..+.+++.++++|.++++
T Consensus 30 ~~lVTGas~GIG~aia~~l-a~~G~~V-----------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 97 (270)
T 3ftp_A 30 VAIVTGASRGIGRAIALEL-ARRGAMV-----------IGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVE 97 (270)
T ss_dssp EEEETTCSSHHHHHHHHHH-HHTTCEE-----------EEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHH-HHCCCEE-----------EEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHH
Confidence 5788888877766655554 4556411 122334555555555443222233458889999999999988
Q ss_pred hh
Q psy10308 138 HL 139 (225)
Q Consensus 138 ~~ 139 (225)
+.
T Consensus 98 ~~ 99 (270)
T 3ftp_A 98 ST 99 (270)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 318
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=20.98 E-value=1.1e+02 Score=24.87 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=42.5
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.++|++=+.-|-....+.| .+.|-- + ++-+.+.+.++++.+.+....-.-..+.+++.++++|+++++
T Consensus 13 ~vlVTGas~gIG~aia~~l-~~~G~~--V---------~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 80 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRC-AEQGAD--L---------VLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVD 80 (264)
T ss_dssp EEEEESCCTTHHHHHHHHH-HHTTCE--E---------EEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHH-HHCcCE--E---------EEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence 5788888877766655554 455531 1 122345565666555553211111237789999999999998
Q ss_pred hh
Q psy10308 138 HL 139 (225)
Q Consensus 138 ~~ 139 (225)
+.
T Consensus 81 ~~ 82 (264)
T 3ucx_A 81 ET 82 (264)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 319
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=20.91 E-value=3e+02 Score=22.51 Aligned_cols=67 Identities=9% Similarity=-0.010 Sum_probs=38.1
Q ss_pred HHHHHHhhCCeeEEEe---cCCCceEEEEeCCHHHHHHHHhhh--ccce-ecC----ceEEEeCC---ChHHHHHHHHhh
Q psy10308 73 LKTLCVQHGPLQNFHL---YLNHSLALAKYSTREEAIKAQGNL--NNCI-LGN----TTIFAEAP---SDAEVQSLLAHL 139 (225)
Q Consensus 73 Lr~Lc~qhGpV~tfhl---nl~~G~AlVrYstkeEA~kAi~aL--n~c~-Lg~----ttI~aeFA---se~ev~~~~~~~ 139 (225)
|++...++|.++.+.. ....++..+++....++++..+.| +++. ..+ ..|++.|. +++||.++++-+
T Consensus 275 l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gi~~~~g~~~~~~iRis~~~~~~~e~i~~l~~~l 354 (362)
T 2c0r_A 275 IYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKEFVKASEQEGFVGLKGHRSVGGLRASIYNAVPYESCEALVQFM 354 (362)
T ss_dssp HHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHHHHHHHHHTTEESCBCCTTTCSEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCccccCCChHHcCCcEEEEEcCCcchHHHHHHHHHHCCCeeccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4444555664423321 123456667766544455555555 3432 221 24999998 799999998765
No 320
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=20.89 E-value=1.2e+02 Score=25.42 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=46.0
Q ss_pred CCCCCcchhHHHHHHHhhCCee---------EEEecCCCceEEEEeC------CHHHHHHHHhhhc-----c--c----e
Q psy10308 63 NLTPQIDGSTLKTLCVQHGPLQ---------NFHLYLNHSLALAKYS------TREEAIKAQGNLN-----N--C----I 116 (225)
Q Consensus 63 NLtpQide~tLr~Lc~qhGpV~---------tfhlnl~~G~AlVrYs------tkeEA~kAi~aLn-----~--c----~ 116 (225)
+|+..+-.+.=++++..||=+. +|-|+.+.=+-++.+. ..+|+-+++++|. + | .
T Consensus 115 ~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ~~~~~~~~~Pa~W~ 194 (216)
T 3sbc_A 115 PINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQWTDKNGTVLPCNWT 194 (216)
T ss_dssp SCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHHHHHHHCCBBCTTCC
T ss_pred CcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHhhhHhhcCCCcCCCCC
Confidence 4555444444567888888553 5555555433344432 6799999999994 3 3 3
Q ss_pred ecCceEEEeCCChHHHHHHHHh
Q psy10308 117 LGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 117 Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
-|..+|. ++.+++..||..
T Consensus 195 ~G~~~i~---p~~~~~~~~~~~ 213 (216)
T 3sbc_A 195 PGAATIK---PTVEDSKEYFEA 213 (216)
T ss_dssp TTSCCBC---CSTTTHHHHHHH
T ss_pred CCCceec---CCHHHHHHHHHH
Confidence 4566664 577888888864
No 321
>1o20_A Gamma-glutamyl phosphate reductase; TM0293, structural genom JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: c.82.1.1
Probab=20.76 E-value=2.2e+02 Score=25.61 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=27.9
Q ss_pred EEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhhccc
Q psy10308 95 ALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSAT 142 (225)
Q Consensus 95 AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~~~ 142 (225)
.+++|++.|||.+-+ |....+ -+..+--.+.+.+.+|.+++..+
T Consensus 329 ~v~~~~~~deAi~~a---N~~~~g-L~a~v~t~d~~~a~~~~~~l~~G 372 (427)
T 1o20_A 329 AIKVVKNVDEAIEHI---KKYSTG-HSESILTENYSNAKKFVSEIDAA 372 (427)
T ss_dssp EEEEESSHHHHHHHH---HHHCCS-SEEEEECSCHHHHHHHHHHCCSS
T ss_pred EEEEECCHHHHHHHH---HhCCCC-CeEEEEeCCHHHHHHHHHhCCcc
Confidence 578899988876554 444433 33333344677788888887543
No 322
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=20.66 E-value=3.5e+02 Score=22.11 Aligned_cols=48 Identities=8% Similarity=0.128 Sum_probs=30.5
Q ss_pred CceEEEEeCCHHHHHHHHhhhcccee---------cCceEEEeCCChHHHHHHHHhhc
Q psy10308 92 HSLALAKYSTREEAIKAQGNLNNCIL---------GNTTIFAEAPSDAEVQSLLAHLS 140 (225)
Q Consensus 92 ~G~AlVrYstkeEA~kAi~aLn~c~L---------g~ttI~aeFAse~ev~~~~~~~~ 140 (225)
-.+.+|++.+.++..++... +++.+ ....|++.|++++||.++++-+.
T Consensus 306 ~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~iRis~~~~~~i~~~~~~l~ 362 (367)
T 3euc_A 306 ANFLLARVPDAAQTFDRLLA-RKVLIKNVSKMHPLLANCLRVTVSTPEENAQFLEAFA 362 (367)
T ss_dssp SSEEEEECSCHHHHHHHHHT-TTEECEECGGGCGGGTTEEEEECCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHH-CCeEEEECCccCCCCCCEEEEecCCHHHHHHHHHHHH
Confidence 34677888744444443322 34322 23469999999999999988653
No 323
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=20.44 E-value=1.8e+02 Score=24.89 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=22.8
Q ss_pred hhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHH
Q psy10308 70 GSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIK 107 (225)
Q Consensus 70 e~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~k 107 (225)
...++.++.+||+|+.+++.-. -+|--.+.+.++.
T Consensus 34 ~~~~~~~~~~yG~v~~l~l~g~---~~vvv~~~~~~~~ 68 (461)
T 3i3k_A 34 IEFLENAYEKYGPVFSFTMVGK---TFTYLLGSDAAAL 68 (461)
T ss_dssp HHHHHHHHHHHCSEEEEEETTE---EEEEECSHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEecCc---eEEEEeChHHHHH
Confidence 4568889999999999987422 2333445554443
No 324
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=20.41 E-value=2.7e+02 Score=22.42 Aligned_cols=71 Identities=17% Similarity=0.137 Sum_probs=40.3
Q ss_pred eEEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHH
Q psy10308 58 WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137 (225)
Q Consensus 58 wLvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~ 137 (225)
.++|++=+.-|-....+.| .+.|--+- ++--...+.++++.+.+....-.-..+.+++.++++|+++++
T Consensus 10 ~vlVTGas~GIG~aia~~l-a~~G~~V~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (259)
T 3edm_A 10 TIVVAGAGRDIGRACAIRF-AQEGANVV----------LTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAIS 78 (259)
T ss_dssp EEEEETTTSHHHHHHHHHH-HHTTCEEE----------EEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHH-HHCCCEEE----------EEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHH
Confidence 5778887777766555554 45553211 121123334444444443211112347889999999999998
Q ss_pred hh
Q psy10308 138 HL 139 (225)
Q Consensus 138 ~~ 139 (225)
+.
T Consensus 79 ~~ 80 (259)
T 3edm_A 79 AA 80 (259)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 325
>4ghk_A Gamma-glutamyl phosphate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.25A {Burkholderia thailandensis}
Probab=20.33 E-value=2.1e+02 Score=25.95 Aligned_cols=45 Identities=16% Similarity=0.073 Sum_probs=26.8
Q ss_pred eEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHhhccc
Q psy10308 94 LALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSAT 142 (225)
Q Consensus 94 ~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~~~~~ 142 (225)
..+++|++.|||.+-+ |....+ -+..|--.+.+.+.+|.+++..+
T Consensus 345 l~v~~~~~~deAi~~a---N~~~~g-L~a~v~t~d~~~a~~~a~~l~aG 389 (444)
T 4ghk_A 345 LAIKIVDGIDAAIEHI---NEYGSH-HTDAIVTEDHDRAMRFLREVDSA 389 (444)
T ss_dssp EEEEEESSHHHHHHHH---HHHSCS-SEEEEECSBHHHHHHHHHHCCSS
T ss_pred EEEEEeCCHHHHHHHH---HhCCCC-ceEEEEeCCHHHHHHHHHhCCcc
Confidence 3467899988875544 444443 23333233566778888887543
No 326
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=20.32 E-value=3.4e+02 Score=22.05 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=0.0
Q ss_pred hHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhh--ccceec--CceEEEeCCChHHHHHHHHhh
Q psy10308 71 STLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNL--NNCILG--NTTIFAEAPSDAEVQSLLAHL 139 (225)
Q Consensus 71 ~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aL--n~c~Lg--~ttI~aeFAse~ev~~~~~~~ 139 (225)
+.|++.+.++| +.+ ....-.|.+|++.. .++++-.+.| +++.+. ...|++-|+.++|+.++++.+
T Consensus 263 ~~l~~~L~~~g--~~~-~~~~~~~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~iRis~~~~~~i~~~~~~l 331 (335)
T 1uu1_A 263 ERMKSALREMG--YRI-TDSRGNFVFVFMEK-EEKERLLEHLRTKNVAVRSFREGVRITIGKREENDMILREL 331 (335)
T ss_dssp HHHHHHHHHHT--CCB-CCCCSSEEEEECCT-HHHHHHHHHHHHHTEEEEEETTEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--cEE-cCCCCeEEEEECCC-CCHHHHHHHHHHCCEEEEECCCeEEEEeCCHHHHHHHHHHH
No 327
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial; mitochondrion, oxidoreductase, transit peptide, disease mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB: 2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Probab=20.27 E-value=2.2e+02 Score=26.22 Aligned_cols=66 Identities=26% Similarity=0.313 Sum_probs=40.2
Q ss_pred EEecCCCCCcchhHHHHHHHhhCCeeEEEecCCCceEEEEeCCHHHHHHHHhhhccceecCceEEEeCCChHHHHHHHHh
Q psy10308 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH 138 (225)
Q Consensus 59 LvL~NLtpQide~tLr~Lc~qhGpV~tfhlnl~~G~AlVrYstkeEA~kAi~aLn~c~Lg~ttI~aeFAse~ev~~~~~~ 138 (225)
-+|.++++++. .+++ ..||||+. +++|++.|||.+ .+|....+ -+..|---+.+.+.+|.++
T Consensus 375 tvl~~v~~~~~--i~~e--EiFGPVl~----------v~~~~~~~eAi~---~aN~~~~g-L~a~v~t~d~~~a~~~~~~ 436 (487)
T 2w8n_A 375 TLLCNVTQDML--CTHE--ETFGPLAP----------VIKFDTEEEAIA---IANAADVG-LAGYFYSQDPAQIWRVAEQ 436 (487)
T ss_dssp EEEEEECGGGG--TTCT--TCCSSEEE----------EEEESCHHHHHH---HHTCTTCC-SEEEEECCCHHHHHHHHHH
T ss_pred EEEecCCCcch--hhhc--ccccceEE----------EEEeCCHHHHHH---HHhCCCCC-ceEEEeCCCHHHHHHHHHh
Confidence 36677776542 0000 35899986 568888877654 44555443 3444434457788889988
Q ss_pred hccc
Q psy10308 139 LSAT 142 (225)
Q Consensus 139 ~~~~ 142 (225)
+..+
T Consensus 437 l~aG 440 (487)
T 2w8n_A 437 LEVG 440 (487)
T ss_dssp SCSS
T ss_pred CCee
Confidence 8543
No 328
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=20.02 E-value=35 Score=23.64 Aligned_cols=21 Identities=10% Similarity=0.107 Sum_probs=15.8
Q ss_pred hhCCeeEEEecCCCceEEEEeCC
Q psy10308 79 QHGPLQNFHLYLNHSLALAKYST 101 (225)
Q Consensus 79 qhGpV~tfhlnl~~G~AlVrYst 101 (225)
..|.|+-| |..+||.||+-+.
T Consensus 2 ~~G~Vk~f--n~~kGfGFI~~~~ 22 (67)
T 3cam_A 2 ATGIVKWF--NDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEEE--ETTTTEEEEEETT
T ss_pred CCEEEEEE--ECCCCeEEEecCC
Confidence 45666665 4889999999764
Done!