Your job contains 1 sequence.
>psy10308
MSSNDLWGPPKPRGPPPGMMGGGGKPPSNGWMVRPNGGGGGGNTWGTSQPQGGWSGTWVL
LKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNT
TIFAEAPSDAEVQSLLAHLSATANNNNNNNGGTGGWARGSSALSNKDTWSSGGGGGNTSQ
LWGTPSNPSSGGSLWGAPPLDSVDRATPSSLNSFLPGDLLGGESM
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10308
(225 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NKY7 - symbol:TNRC6C "Uncharacterized protein... 339 1.4e-29 1
UNIPROTKB|F1NI60 - symbol:TNRC6C "Uncharacterized protein... 339 3.4e-29 1
UNIPROTKB|G8JLL8 - symbol:TNRC6A "Trinucleotide repeat-co... 324 3.4e-29 1
FB|FBgn0051992 - symbol:gw "gawky" species:7227 "Drosophi... 337 4.0e-29 1
UNIPROTKB|J9NUK0 - symbol:TNRC6C "Uncharacterized protein... 337 5.3e-29 1
UNIPROTKB|F1P8I7 - symbol:TNRC6C "Uncharacterized protein... 337 6.4e-29 1
MGI|MGI:2443265 - symbol:Tnrc6c "trinucleotide repeat con... 335 8.7e-29 1
MGI|MGI:2385292 - symbol:Tnrc6a "trinucleotide repeat con... 328 1.2e-28 2
UNIPROTKB|Q9HCJ0 - symbol:TNRC6C "Trinucleotide repeat-co... 332 1.8e-28 1
UNIPROTKB|G3XAB8 - symbol:TNRC6C "Trinucleotide repeat-co... 332 1.9e-28 1
UNIPROTKB|F1M6G5 - symbol:Tnrc6a "Protein Tnrc6a" species... 324 2.4e-28 2
RGD|1307268 - symbol:Tnrc6a "trinucleotide repeat contain... 324 2.5e-28 2
UNIPROTKB|F1MLT5 - symbol:TNRC6C "Uncharacterized protein... 331 2.7e-28 1
UNIPROTKB|F1NAU7 - symbol:Gga.50341 "Uncharacterized prot... 329 4.4e-28 1
UNIPROTKB|H7C269 - symbol:TNRC6A "Trinucleotide repeat-co... 324 4.8e-28 1
UNIPROTKB|F1MX25 - symbol:TNRC6A "Uncharacterized protein... 328 5.4e-28 1
UNIPROTKB|G3N258 - symbol:TNRC6A "Uncharacterized protein... 328 5.6e-28 1
ZFIN|ZDB-GENE-061207-48 - symbol:si:dkey-10p5.9 "si:dkey-... 324 1.1e-27 1
UNIPROTKB|J9PAE6 - symbol:TNRC6A "Uncharacterized protein... 324 1.5e-27 1
UNIPROTKB|F1PMK2 - symbol:TNRC6A "Uncharacterized protein... 324 1.6e-27 1
UNIPROTKB|Q8NDV7 - symbol:TNRC6A "Trinucleotide repeat-co... 324 1.6e-27 1
UNIPROTKB|D4A372 - symbol:Tnrc6a "Trinucleotide repeat co... 309 1.0e-26 2
ZFIN|ZDB-GENE-030131-7440 - symbol:si:dkey-54k13.1 "si:dk... 306 1.1e-26 2
ZFIN|ZDB-GENE-070705-475 - symbol:si:dkey-46g23.1 "si:dke... 243 5.8e-25 3
RGD|621428 - symbol:Tnrc6b "trinucleotide repeat containi... 281 1.2e-24 1
UNIPROTKB|F1SRA3 - symbol:TNRC6B "Uncharacterized protein... 282 1.2e-23 1
UNIPROTKB|E1BQG1 - symbol:TNRC6B "Uncharacterized protein... 285 1.9e-23 1
UNIPROTKB|F1PND4 - symbol:TNRC6B "Uncharacterized protein... 285 1.9e-23 1
UNIPROTKB|Q9UPQ9 - symbol:TNRC6B "Trinucleotide repeat-co... 285 2.0e-23 1
UNIPROTKB|J9NXD6 - symbol:TNRC6B "Uncharacterized protein... 285 2.0e-23 1
UNIPROTKB|F1MY06 - symbol:TNRC6B "Uncharacterized protein... 284 2.6e-23 1
UNIPROTKB|F1LSM1 - symbol:Tnrc6b "Protein Tnrc6b" species... 281 5.1e-23 1
MGI|MGI:2443730 - symbol:Tnrc6b "trinucleotide repeat con... 281 5.3e-23 1
UNIPROTKB|J9JHC8 - symbol:TNRC6B "Uncharacterized protein... 260 1.2e-20 1
UNIPROTKB|I3LUA8 - symbol:TNRC6C "Uncharacterized protein... 257 1.5e-20 1
UNIPROTKB|I3LK32 - symbol:TNRC6C "Uncharacterized protein... 257 1.5e-20 1
UNIPROTKB|I3LGC4 - symbol:TNRC6A "Uncharacterized protein... 220 3.6e-18 1
UNIPROTKB|H3BRT3 - symbol:TNRC6A "Trinucleotide repeat-co... 214 1.6e-17 1
UNIPROTKB|H0Y720 - symbol:TNRC6B "Trinucleotide repeat-co... 193 8.8e-14 1
>UNIPROTKB|F1NKY7 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
Pfam:PF00627 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
SUPFAM:SSF46934 GeneTree:ENSGT00410000025966 InterPro:IPR019486
InterPro:IPR026805 Pfam:PF10427 Pfam:PF12938 EMBL:AADN02029920
IPI:IPI00819779 Ensembl:ENSGALT00000039190 ArrayExpress:F1NKY7
Uniprot:F1NKY7
Length = 993
Score = 339 (124.4 bits), Expect = 1.4e-29, P = 1.4e-29
Identities = 85/211 (40%), Positives = 106/211 (50%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 788 SSTWGASPLGWTSSYSSGSAWSTDS--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLI 845
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXX 144
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE + EV LA
Sbjct: 846 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQPLPP 905
Query: 145 XXXXXXXXXXXWAR----GSSALSNKDT--WXXXXXXXNTSQ--LWGTPSNPSSGGSLWG 196
R GS L DT W S LWG P SLWG
Sbjct: 906 TSSWQSNAGSTQPRLGSAGSHGLVRGDTGHWNSPCLGGKGSSELLWG--GVPQYSSSLWG 963
Query: 197 APPLDSVDRA--TPSSLNSFLPGDLLGGESM 225
P D R +P+ LN+ LPGDLL GES+
Sbjct: 964 PPSADD-GRVIGSPTPLNTLLPGDLLSGESI 993
>UNIPROTKB|F1NI60 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0001706 "endoderm formation"
evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
[GO:0060964 "regulation of gene silencing by miRNA" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 Pfam:PF00627 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 OMA:WDADSNR
EMBL:AADN02029920 IPI:IPI00572247 Ensembl:ENSGALT00000002646
ArrayExpress:F1NI60 Uniprot:F1NI60
Length = 1733
Score = 339 (124.4 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 85/211 (40%), Positives = 106/211 (50%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1528 SSTWGASPLGWTSSYSSGSAWSTDS--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLI 1585
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXX 144
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE + EV LA
Sbjct: 1586 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQPLPP 1645
Query: 145 XXXXXXXXXXXWAR----GSSALSNKDT--WXXXXXXXNTSQ--LWGTPSNPSSGGSLWG 196
R GS L DT W S LWG P SLWG
Sbjct: 1646 TSSWQSNAGSTQPRLGSAGSHGLVRGDTGHWNSPCLGGKGSSELLWG--GVPQYSSSLWG 1703
Query: 197 APPLDSVDRA--TPSSLNSFLPGDLLGGESM 225
P D R +P+ LN+ LPGDLL GES+
Sbjct: 1704 PPSADD-GRVIGSPTPLNTLLPGDLLSGESI 1733
>UNIPROTKB|G8JLL8 [details] [associations]
symbol:TNRC6A "Trinucleotide repeat-containing gene 6A
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0009267 GO:GO:0031047 PANTHER:PTHR31070 EMBL:AC008731
EMBL:AC002565 HGNC:HGNC:11969 ChiTaRS:TNRC6A
ProteinModelPortal:G8JLL8 SMR:G8JLL8 Ensembl:ENST00000432286
Bgee:G8JLL8 Uniprot:G8JLL8
Length = 440
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 82/197 (41%), Positives = 105/197 (53%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 247 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 304
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 305 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 364
Query: 161 -----SALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 365 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 423
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 424 INAFLSVDHLGGGGESM 440
>FB|FBgn0051992 [details] [associations]
symbol:gw "gawky" species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0035195 "gene silencing by
miRNA" evidence=IMP] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0001700 "embryonic development via the syncytial blastoderm"
evidence=IDA] [GO:0006402 "mRNA catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032880 "regulation
of protein localization" evidence=IMP] InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 Pfam:PF00627 PROSITE:PS50102 SMART:SM00360
GO:GO:0006417 GO:GO:0001700 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0032880 GO:GO:0003723 InterPro:IPR015940 PROSITE:PS50030
GO:GO:0000932 GO:GO:0006402 GO:GO:0035195 EMBL:AE014135
SUPFAM:SSF46934 EMBL:AY075429 EMBL:AY118860 RefSeq:NP_001014691.1
RefSeq:NP_001014692.1 RefSeq:NP_726596.1 RefSeq:NP_726597.1
RefSeq:NP_726598.1 RefSeq:NP_726599.1 RefSeq:NP_726600.1
RefSeq:NP_726601.1 UniGene:Dm.1403 PDB:2WBR PDBsum:2WBR
ProteinModelPortal:Q8SY33 SMR:Q8SY33 DIP:DIP-35525N IntAct:Q8SY33
MINT:MINT-764572 STRING:Q8SY33 PRIDE:Q8SY33
EnsemblMetazoa:FBtr0089096 EnsemblMetazoa:FBtr0089097
EnsemblMetazoa:FBtr0089100 EnsemblMetazoa:FBtr0089101 GeneID:43808
KEGG:dme:Dmel_CG31992 UCSC:CG31992-RA CTD:43808 FlyBase:FBgn0051992
GeneTree:ENSGT00410000025966 InParanoid:Q8SY33 OMA:QYRILVE
PhylomeDB:Q8SY33 ChiTaRS:gw EvolutionaryTrace:Q8SY33
GenomeRNAi:43808 NextBio:835971 Bgee:Q8SY33 InterPro:IPR019486
InterPro:IPR026805 PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938
Uniprot:Q8SY33
Length = 1384
Score = 337 (123.7 bits), Expect = 4.0e-29, P = 4.0e-29
Identities = 72/168 (42%), Positives = 94/168 (55%)
Query: 28 SNGWMVRPNXXXXXXNT-WGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
+NGW+ + NT W W +W+LLKNLT QIDG TL+TLC+QHGPL +F
Sbjct: 1089 ANGWLQPRSGGVQTTNTNWTGGNTT--WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSF 1146
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
H YLN +AL KY+TREEA KAQ LNNC+L NTTIFAE+PS+ EVQS++ HL
Sbjct: 1147 HPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSENEVQSIMQHLPQTPSST 1206
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQLW-GTPSNPSSGGS 193
++ +N ++ N S G+ S SG +
Sbjct: 1207 SSSGTSGGNVGGVGTSANNANSGSAACLSGNNSGNGNGSASGAGSGNN 1254
>UNIPROTKB|J9NUK0 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0031047 SUPFAM:SSF46934 GeneTree:ENSGT00410000025966
InterPro:IPR019486 InterPro:IPR026805 PANTHER:PTHR31070
Pfam:PF10427 Pfam:PF12938 EMBL:AAEX03006251 EMBL:AAEX03006252
Ensembl:ENSCAFT00000050041 Uniprot:J9NUK0
Length = 1685
Score = 337 (123.7 bits), Expect = 5.3e-29, P = 5.3e-29
Identities = 84/212 (39%), Positives = 105/212 (49%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1479 SSTWGASPLGWTSSYSSGSAWSTDT--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLV 1536
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXX 144
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE + EV LA
Sbjct: 1537 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPP 1596
Query: 145 XXXXXXXXXXXWAR-----GSSALSNKDT--WXXXXXXXNTSQ--LWGTPSNPSSGGSLW 195
R GS L D W S LWG P SLW
Sbjct: 1597 TSSWQSSTGTGQTRLGASGGSHGLVRSDPGHWSAPCLAGKGSSDLLWG--GVPQYSSSLW 1654
Query: 196 GAPPLDSVDRA--TPSSLNSFLPGDLLGGESM 225
G P D R +P+ LN+ LPGDLL GES+
Sbjct: 1655 GPPSSDD-GRVIGSPTPLNTLLPGDLLSGESI 1685
>UNIPROTKB|F1P8I7 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 Pfam:PF00627 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 OMA:WDADSNR
EMBL:AAEX03006251 EMBL:AAEX03006252 Ensembl:ENSCAFT00000008443
Uniprot:F1P8I7
Length = 1933
Score = 337 (123.7 bits), Expect = 6.4e-29, P = 6.4e-29
Identities = 84/212 (39%), Positives = 105/212 (49%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1727 SSTWGASPLGWTSSYSSGSAWSTDT--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLV 1784
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXX 144
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE + EV LA
Sbjct: 1785 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPP 1844
Query: 145 XXXXXXXXXXXWAR-----GSSALSNKDT--WXXXXXXXNTSQ--LWGTPSNPSSGGSLW 195
R GS L D W S LWG P SLW
Sbjct: 1845 TSSWQSSTGTGQTRLGASGGSHGLVRSDPGHWSAPCLAGKGSSDLLWG--GVPQYSSSLW 1902
Query: 196 GAPPLDSVDRA--TPSSLNSFLPGDLLGGESM 225
G P D R +P+ LN+ LPGDLL GES+
Sbjct: 1903 GPPSSDD-GRVIGSPTPLNTLLPGDLLSGESI 1933
>MGI|MGI:2443265 [details] [associations]
symbol:Tnrc6c "trinucleotide repeat containing 6C"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001706 "endoderm formation" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0007492 "endoderm
development" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IMP]
[GO:0048568 "embryonic organ development" evidence=IMP] [GO:0060964
"regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000449 InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 Pfam:PF00627 PROSITE:PS50102
SMART:SM00360 MGI:MGI:2443265 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934 GO:GO:0035162
GO:GO:0001706 GO:GO:0060964 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 eggNOG:NOG318066
HOVERGEN:HBG062594 CTD:57690 ChiTaRS:TNRC6C EMBL:AK047249
EMBL:AK134064 EMBL:AK147471 EMBL:AK122529 IPI:IPI00337947
RefSeq:NP_932139.2 UniGene:Mm.40272 UniGene:Mm.473244
ProteinModelPortal:Q3UHC0 SMR:Q3UHC0 STRING:Q3UHC0
PhosphoSite:Q3UHC0 PaxDb:Q3UHC0 PRIDE:Q3UHC0 GeneID:217351
KEGG:mmu:217351 InParanoid:Q3UHC0 NextBio:375797 Bgee:Q3UHC0
CleanEx:MM_TNRC6C Genevestigator:Q3UHC0 Uniprot:Q3UHC0
Length = 1690
Score = 335 (123.0 bits), Expect = 8.7e-29, P = 8.7e-29
Identities = 84/211 (39%), Positives = 107/211 (50%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1484 SSTWGTSPLGWTSSYSSGSAWSTDT--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLI 1541
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXX 144
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE + EV LA
Sbjct: 1542 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPP 1601
Query: 145 XXXXXXXXXXXWAR-GSSA----LSNKDT--WXXXXXXXNTSQ--LWGTPSNPSSGGSLW 195
R G+S L DT W S LWG P SLW
Sbjct: 1602 TSSWQSSSGGSQPRLGTSGSTHGLVRSDTAHWNTPCLSGKGSSELLWG--GVPQYSSSLW 1659
Query: 196 GAPPL-DSVDRATPSSLNSFLPGDLLGGESM 225
G P D+ +P+ LN+ LPGDLL GES+
Sbjct: 1660 GPPSAEDARVIGSPTPLNTLLPGDLLSGESI 1690
>MGI|MGI:2385292 [details] [associations]
symbol:Tnrc6a "trinucleotide repeat containing 6a"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IDA]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0032507
"maintenance of protein location in cell" evidence=ISS] [GO:0032947
"protein complex scaffold" evidence=ISS] [GO:0035068
"micro-ribonucleoprotein complex" evidence=ISO] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISS] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2385292 GO:GO:0048471 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009267 GO:GO:0032507 GO:GO:0000932
GO:GO:0035068 GO:GO:0035278 GO:GO:0032947 SUPFAM:SSF46934
InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427 CTD:27327
eggNOG:NOG318066 ChiTaRS:TNRC6A EMBL:AK147327 IPI:IPI00670741
RefSeq:NP_659174.3 UniGene:Mm.102305 ProteinModelPortal:Q3UHK8
SMR:Q3UHK8 IntAct:Q3UHK8 STRING:Q3UHK8 PhosphoSite:Q3UHK8
PRIDE:Q3UHK8 GeneID:233833 KEGG:mmu:233833 UCSC:uc009jpb.1
HOGENOM:HOG000049171 InParanoid:Q3UHK8 OrthoDB:EOG4DFPMT
NextBio:381871 Genevestigator:Q3UHK8 Uniprot:Q3UHK8
Length = 1896
Score = 328 (120.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 82/195 (42%), Positives = 101/195 (51%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1704 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1761
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 1762 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 1821
Query: 161 ---SALSNKDT--WXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDRATPSSLN 212
S S D W N L GT P SLWG P D ++PS +N
Sbjct: 1822 CSHSFSSRTDVNHWNGAGLSGANCGDLHGTSLWGTPHYSTSLWGPPSSDPRGISSPSPIN 1881
Query: 213 SFLPGDLLGG--ESM 225
+FL D LGG ESM
Sbjct: 1882 AFLSVDHLGGGGESM 1896
Score = 37 (18.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 34 RPNXXXXXXNTWGT--SQPQGG 53
+P N WGT S GG
Sbjct: 319 KPESSNNRMNAWGTVSSSSNGG 340
>UNIPROTKB|Q9HCJ0 [details] [associations]
symbol:TNRC6C "Trinucleotide repeat-containing gene 6C
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IEA] [GO:0005829 "cytosol"
evidence=TAS] [GO:0007219 "Notch signaling pathway" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 Pfam:PF00627 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 Reactome:REACT_111102 Reactome:REACT_116125
Reactome:REACT_6900 GO:GO:0010467 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007219 GO:GO:0003723 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
EMBL:AC021593 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 PDB:2X04 PDB:3KTP
PDBsum:2X04 PDBsum:3KTP eggNOG:NOG318066 HOVERGEN:HBG062594
HOGENOM:HOG000049171 EMBL:AB046802 EMBL:AL834429 EMBL:BC045631
EMBL:AK056421 IPI:IPI00030572 IPI:IPI00043407 RefSeq:NP_001136112.1
RefSeq:NP_061869.2 UniGene:Hs.569831 PDB:2DKL PDBsum:2DKL
ProteinModelPortal:Q9HCJ0 SMR:Q9HCJ0 DIP:DIP-48569N STRING:Q9HCJ0
PhosphoSite:Q9HCJ0 DMDM:126253813 PaxDb:Q9HCJ0 PRIDE:Q9HCJ0
Ensembl:ENST00000301624 Ensembl:ENST00000541771 GeneID:57690
KEGG:hsa:57690 UCSC:uc002jud.2 UCSC:uc002juf.2 CTD:57690
GeneCards:GC17P076002 H-InvDB:HIX0014215 HGNC:HGNC:29318
HPA:HPA022007 MIM:610741 neXtProt:NX_Q9HCJ0 PharmGKB:PA134880671
InParanoid:Q9HCJ0 OrthoDB:EOG4BG8V9 ChiTaRS:TNRC6C
EvolutionaryTrace:Q9HCJ0 GenomeRNAi:57690 NextBio:64527
ArrayExpress:Q9HCJ0 Bgee:Q9HCJ0 CleanEx:HS_TNRC6C
Genevestigator:Q9HCJ0 Uniprot:Q9HCJ0
Length = 1690
Score = 332 (121.9 bits), Expect = 1.8e-28, P = 1.8e-28
Identities = 84/211 (39%), Positives = 105/211 (49%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1484 SSTWGASPLGWTSSYSSGSAWSTDT--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLI 1541
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXX 144
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE + EV LA
Sbjct: 1542 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPP 1601
Query: 145 XXXXXXXXXXXWAR----GSS-ALSNKDT--WXXXXXXXNTSQ--LWGTPSNPSSGGSLW 195
R GSS L D W S LWG P SLW
Sbjct: 1602 TSSWQSSSASSQPRLSAAGSSHGLVRSDAGHWNAPCLGGKGSSELLWG--GVPQYSSSLW 1659
Query: 196 GAPPLD-SVDRATPSSLNSFLPGDLLGGESM 225
G P D S +P+ L + LPGDLL GES+
Sbjct: 1660 GPPSADDSRVIGSPTPLTTLLPGDLLSGESL 1690
>UNIPROTKB|G3XAB8 [details] [associations]
symbol:TNRC6C "Trinucleotide repeat-containing gene 6C
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0035162
"embryonic hemopoiesis" evidence=IEA] [GO:0060964 "regulation of
gene silencing by miRNA" evidence=IEA] InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 Pfam:PF00627 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940 SMART:SM00165
PROSITE:PS50030 EMBL:CH471099 GO:GO:0031047 SUPFAM:SSF46934
EMBL:AC021593 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 RefSeq:NP_001136112.1
UniGene:Hs.569831 GeneID:57690 KEGG:hsa:57690 CTD:57690
HGNC:HGNC:29318 ChiTaRS:TNRC6C GenomeRNAi:57690 NextBio:64527
EMBL:AC015804 SMR:G3XAB8 Ensembl:ENST00000335749
Ensembl:ENST00000544502 Ensembl:ENST00000588847 OMA:WDADSNR
Uniprot:G3XAB8
Length = 1726
Score = 332 (121.9 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 84/211 (39%), Positives = 105/211 (49%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1520 SSTWGASPLGWTSSYSSGSAWSTDT--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLI 1577
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXX 144
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE + EV LA
Sbjct: 1578 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPP 1637
Query: 145 XXXXXXXXXXXWAR----GSS-ALSNKDT--WXXXXXXXNTSQ--LWGTPSNPSSGGSLW 195
R GSS L D W S LWG P SLW
Sbjct: 1638 TSSWQSSSASSQPRLSAAGSSHGLVRSDAGHWNAPCLGGKGSSELLWG--GVPQYSSSLW 1695
Query: 196 GAPPLD-SVDRATPSSLNSFLPGDLLGGESM 225
G P D S +P+ L + LPGDLL GES+
Sbjct: 1696 GPPSADDSRVIGSPTPLTTLLPGDLLSGESL 1726
>UNIPROTKB|F1M6G5 [details] [associations]
symbol:Tnrc6a "Protein Tnrc6a" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 RGD:1307268 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0031047 SUPFAM:SSF46934 InterPro:IPR019486
PANTHER:PTHR31070 Pfam:PF10427 IPI:IPI00951623
Ensembl:ENSRNOT00000065634 ArrayExpress:F1M6G5 Uniprot:F1M6G5
Length = 1881
Score = 324 (119.1 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 82/197 (41%), Positives = 105/197 (53%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1688 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1745
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 1746 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 1805
Query: 161 -----SALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 1806 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 1864
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 1865 INAFLSVDHLGGGGESM 1881
Score = 38 (18.4 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 34 RPNXXXXXXNTWGT--SQPQGG 53
+P N WGT S GG
Sbjct: 302 KPESSNSRMNAWGTVSSSSNGG 323
>RGD|1307268 [details] [associations]
symbol:Tnrc6a "trinucleotide repeat containing 6a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009267 "cellular response to starvation" evidence=ISO]
[GO:0031047 "gene silencing by RNA" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=ISO] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISO] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 RGD:1307268
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0031047
SUPFAM:SSF46934 GeneTree:ENSGT00410000025966 InterPro:IPR019486
PANTHER:PTHR31070 Pfam:PF10427 IPI:IPI00869768
Ensembl:ENSRNOT00000017885 UCSC:RGD:1307268 ArrayExpress:F1M9Y8
Uniprot:F1M9Y8
Length = 1898
Score = 324 (119.1 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 82/197 (41%), Positives = 105/197 (53%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1705 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1762
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 1763 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 1822
Query: 161 -----SALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 1823 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 1881
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 1882 INAFLSVDHLGGGGESM 1898
Score = 38 (18.4 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 34 RPNXXXXXXNTWGT--SQPQGG 53
+P N WGT S GG
Sbjct: 319 KPESSNSRMNAWGTVSSSSNGG 340
>UNIPROTKB|F1MLT5 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 Pfam:PF00627 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF10427 Pfam:PF12938 OMA:WDADSNR
EMBL:DAAA02049484 EMBL:DAAA02049485 IPI:IPI00690659
Ensembl:ENSBTAT00000061369 Uniprot:F1MLT5
Length = 1906
Score = 331 (121.6 bits), Expect = 2.7e-28, P = 2.7e-28
Identities = 84/212 (39%), Positives = 106/212 (50%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1700 SSAWGASPLGWTSSYSSGSAWSTDA--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLI 1757
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXX 144
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE + EV LA
Sbjct: 1758 TFHLNLTQGHAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFLAQGQALPP 1817
Query: 145 XXXXXXXXXXXWAR-GSSA----LSNKDT--WXXXXXXXNTSQ--LWGTPSNPSSGGSLW 195
R G+S L D W S LWG P SLW
Sbjct: 1818 TSSWQPSPGTSQTRLGTSGSAHGLVRSDAGHWNAPGLAGKGSSDLLWG--GVPQYSSSLW 1875
Query: 196 GAPPLDSVDRA--TPSSLNSFLPGDLLGGESM 225
G P D R +P+ LN+ LPGDLL GES+
Sbjct: 1876 GPPSSDD-GRVIGSPTPLNTLLPGDLLSGESI 1906
>UNIPROTKB|F1NAU7 [details] [associations]
symbol:Gga.50341 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=IEA] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=IEA] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009267 GO:GO:0000932
GO:GO:0035068 GO:GO:0035278 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 OMA:TQTFNSG EMBL:AADN02023630 IPI:IPI00578145
Ensembl:ENSGALT00000009788 Uniprot:F1NAU7
Length = 1892
Score = 329 (120.9 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 84/199 (42%), Positives = 112/199 (56%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1699 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1756
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH---LSXXXXXXXXXXXXXXXWA-R 158
EE +KAQ +L+ C+LGNTTI AE S+ E+ A L+ +
Sbjct: 1757 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQGQSLTPSPGWQSLGSSQNRLGSID 1816
Query: 159 GSSALSNKDT---WXXXXXXXNTS------QLWGTPSNPSSGGSLWGAPPL-DSVDRATP 208
GS + SN++ W +S LWG+P N S+ SLWG P D+ ++P
Sbjct: 1817 GSHSFSNRNDLNHWNGAGLSGTSSGDLHGTSLWGSP-NYST--SLWGTPSSNDTRGISSP 1873
Query: 209 SSLNSFLPGDLLGG--ESM 225
S +N+FL D LGG ESM
Sbjct: 1874 SPINAFLSVDHLGGGGESM 1892
>UNIPROTKB|H7C269 [details] [associations]
symbol:TNRC6A "Trinucleotide repeat-containing gene 6A
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0031047 SUPFAM:SSF46934 InterPro:IPR019486
PANTHER:PTHR31070 Pfam:PF10427 EMBL:AC008731 EMBL:AC002565
HGNC:HGNC:11969 ChiTaRS:TNRC6A Ensembl:ENST00000450465 Bgee:H7C269
Uniprot:H7C269
Length = 906
Score = 324 (119.1 bits), Expect = 4.8e-28, P = 4.8e-28
Identities = 82/197 (41%), Positives = 105/197 (53%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 713 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 770
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 771 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 830
Query: 161 -----SALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 831 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 889
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 890 INAFLSVDHLGGGGESM 906
>UNIPROTKB|F1MX25 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0031047 SUPFAM:SSF46934 GeneTree:ENSGT00410000025966
InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427 EMBL:DAAA02057793
IPI:IPI00723624 Ensembl:ENSBTAT00000023950 Uniprot:F1MX25
Length = 1851
Score = 328 (120.5 bits), Expect = 5.4e-28, P = 5.4e-28
Identities = 83/197 (42%), Positives = 107/197 (54%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1658 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1715
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEV-------QSLLAHLSXXXXXXXXXXXXXXX 155
EE +KAQ +L+ C+LGNTTI AE S+ E+ QSL S
Sbjct: 1716 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPSWQSLGSSQSRLGSLD 1775
Query: 156 WARGSSALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
+ S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 1776 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 1834
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 1835 INAFLSVDHLGGGGESM 1851
>UNIPROTKB|G3N258 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035278 "negative regulation of translation involved in
gene silencing by miRNA" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009267 GO:GO:0000932
GO:GO:0035068 GO:GO:0035278 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 OMA:TQTFNSG EMBL:DAAA02057793
Ensembl:ENSBTAT00000064228 Uniprot:G3N258
Length = 1901
Score = 328 (120.5 bits), Expect = 5.6e-28, P = 5.6e-28
Identities = 83/197 (42%), Positives = 107/197 (54%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1708 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1765
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEV-------QSLLAHLSXXXXXXXXXXXXXXX 155
EE +KAQ +L+ C+LGNTTI AE S+ E+ QSL S
Sbjct: 1766 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPSWQSLGSSQSRLGSLD 1825
Query: 156 WARGSSALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
+ S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 1826 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 1884
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 1885 INAFLSVDHLGGGGESM 1901
>ZFIN|ZDB-GENE-061207-48 [details] [associations]
symbol:si:dkey-10p5.9 "si:dkey-10p5.9" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000449
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
Pfam:PF00627 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061207-48
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR015940
SMART:SM00165 PROSITE:PS50030 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 InterPro:IPR026805
Pfam:PF10427 Pfam:PF12938 EMBL:AL954746 IPI:IPI00919590
Ensembl:ENSDART00000112423 ArrayExpress:E9QB90 Bgee:E9QB90
Uniprot:E9QB90
Length = 1534
Score = 324 (119.1 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 82/213 (38%), Positives = 106/213 (49%)
Query: 28 SNGWMVRPNXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFH 87
S GW N TW + P G S W++L+NLTPQIDGSTL+TLC+QHGPL FH
Sbjct: 1328 SQGWN---NSYSSEGGTWSSDSPNRGSS--WLVLRNLTPQIDGSTLRTLCMQHGPLITFH 1382
Query: 88 LYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAH---LSXXXX 144
L L A+ +YS++EEA KAQ +L+ C+LGNTTI AE S+ +V A L+
Sbjct: 1383 LNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFASEEDVNRFFAQGQSLTPTTS 1442
Query: 145 XXXXXXXXXXXWARGSSALSNKD-TWXXXXXXXNTSQLWGTPSNPSSGGSLWG------- 196
G+ S+ W + G S+ + G LWG
Sbjct: 1443 WQASPAPGSSQPRLGNPTASHPTGLWSGGGGTKSVCSA-GNSSSGNGGDMLWGGVPQYSS 1501
Query: 197 --APPLDSVDRA--TPSSLNSFLPGDLLGGESM 225
APP R +P +N+ LPGDLL GESM
Sbjct: 1502 LWAPPNGDDARVIGSPIPINTLLPGDLLSGESM 1534
>UNIPROTKB|J9PAE6 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0031047
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:AAEX03004442 EMBL:AAEX03004443 EMBL:AAEX03004444
Ensembl:ENSCAFT00000045503 Uniprot:J9PAE6
Length = 1882
Score = 324 (119.1 bits), Expect = 1.5e-27, P = 1.5e-27
Identities = 82/197 (41%), Positives = 105/197 (53%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1689 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1746
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 1747 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 1806
Query: 161 -----SALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 1807 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 1865
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 1866 INAFLSVDHLGGGGESM 1882
>UNIPROTKB|F1PMK2 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035278 "negative regulation of translation
involved in gene silencing by miRNA" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR026804 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0009267 GO:GO:0000932 GO:GO:0035068
GO:GO:0035278 GeneTree:ENSGT00410000025966 InterPro:IPR019486
PANTHER:PTHR31070 Pfam:PF10427 OMA:TQTFNSG EMBL:AAEX03004442
EMBL:AAEX03004443 EMBL:AAEX03004444 Ensembl:ENSCAFT00000027808
Uniprot:F1PMK2
Length = 1957
Score = 324 (119.1 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 82/197 (41%), Positives = 105/197 (53%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1764 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1821
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 1822 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 1881
Query: 161 -----SALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 1882 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 1940
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 1941 INAFLSVDHLGGGGESM 1957
>UNIPROTKB|Q8NDV7 [details] [associations]
symbol:TNRC6A "Trinucleotide repeat-containing gene 6A
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0035068 "micro-ribonucleoprotein complex" evidence=IDA]
[GO:0035278 "negative regulation of translation involved in gene
silencing by miRNA" evidence=IDA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0007219 "Notch signaling pathway" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0010467
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007219 GO:GO:0003723
GO:GO:0009267 GO:GO:0000932 GO:GO:0035068 GO:GO:0035278
SUPFAM:SSF46934 InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427
EMBL:AC008731 EMBL:AY035864 EMBL:AJ492221 EMBL:AL713750
EMBL:AL833757 EMBL:AC002565 EMBL:BC024324 EMBL:BC068209 EMBL:U80739
EMBL:AB040893 EMBL:AK001773 IPI:IPI00160265 IPI:IPI00382618
IPI:IPI00395878 IPI:IPI00554606 IPI:IPI00554721 IPI:IPI00853634
RefSeq:NP_055309.2 UniGene:Hs.655057 ProteinModelPortal:Q8NDV7
SMR:Q8NDV7 IntAct:Q8NDV7 STRING:Q8NDV7 PhosphoSite:Q8NDV7
DMDM:296452846 PaxDb:Q8NDV7 PRIDE:Q8NDV7 Ensembl:ENST00000315183
Ensembl:ENST00000395799 GeneID:27327 KEGG:hsa:27327 UCSC:uc002dmm.3
UCSC:uc002dmn.3 UCSC:uc002dmp.3 UCSC:uc002dmr.3 UCSC:uc010vcc.1
CTD:27327 GeneCards:GC16P024741 H-InvDB:HIX0012904
H-InvDB:HIX0173209 HGNC:HGNC:11969 HPA:HPA015305 HPA:HPA017869
MIM:610739 neXtProt:NX_Q8NDV7 PharmGKB:PA36656 eggNOG:NOG318066
HOVERGEN:HBG062594 InParanoid:Q8NDV7 OMA:TQTFNSG ChiTaRS:TNRC6A
GenomeRNAi:27327 NextBio:50354 ArrayExpress:Q8NDV7 Bgee:Q8NDV7
Genevestigator:Q8NDV7 GermOnline:ENSG00000090905 Uniprot:Q8NDV7
Length = 1962
Score = 324 (119.1 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 82/197 (41%), Positives = 105/197 (53%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1769 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1826
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 1827 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 1886
Query: 161 -----SALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 1887 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 1945
Query: 211 LNSFLPGDLLGG--ESM 225
+N+FL D LGG ESM
Sbjct: 1946 INAFLSVDHLGGGGESM 1962
>UNIPROTKB|D4A372 [details] [associations]
symbol:Tnrc6a "Trinucleotide repeat containing 6
(Predicted), isoform CRA_c" species:10116 "Rattus norvegicus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 SMART:SM00360 RGD:1307268
GO:GO:0000166 EMBL:CH473956 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0009267 GO:GO:0000932 GO:GO:0035068 GO:GO:0035278
SUPFAM:SSF46934 InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427
CTD:27327 IPI:IPI00952192 RefSeq:NP_001101019.1 UniGene:Rn.6839
Ensembl:ENSRNOT00000068331 GeneID:308971 KEGG:rno:308971
NextBio:659888 Uniprot:D4A372
Length = 1954
Score = 309 (113.8 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 77/190 (40%), Positives = 100/190 (52%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 1744 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 1801
Query: 103 EEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWARGS-- 160
EE +KAQ +L+ C+LGNTTI AE S+ E+ A GS
Sbjct: 1802 EEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFAQSQSLTPSPGWQSLGSSQSRLGSLD 1861
Query: 161 -----SALSNKDTWXXXXXX-XNTSQLWGTP--SNPSSGGSLWGAPPLDSVDR--ATPSS 210
S+ ++ + W N L GT P SLWG PP S R ++PS
Sbjct: 1862 CSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGTPHYSTSLWG-PPSSSDPRGISSPSP 1920
Query: 211 LNSFLPGDLL 220
+N+FL D L
Sbjct: 1921 INAFLSVDHL 1930
Score = 38 (18.4 bits), Expect = 1.0e-26, Sum P(2) = 1.0e-26
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 34 RPNXXXXXXNTWGT--SQPQGG 53
+P N WGT S GG
Sbjct: 309 KPESSNSRMNAWGTVSSSSNGG 330
>ZFIN|ZDB-GENE-030131-7440 [details] [associations]
symbol:si:dkey-54k13.1 "si:dkey-54k13.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000449 InterPro:IPR000504 InterPro:IPR009060
InterPro:IPR012677 Pfam:PF00627 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7440 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR015940 SMART:SM00165 PROSITE:PS50030
SUPFAM:SSF46934 GeneTree:ENSGT00410000025966 InterPro:IPR019486
InterPro:IPR026805 Pfam:PF10427 Pfam:PF12938 EMBL:BX470190
EMBL:BX927111 IPI:IPI00890464 Ensembl:ENSDART00000113726
Ensembl:ENSDART00000151634 Uniprot:E7F055
Length = 1817
Score = 306 (112.8 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 78/195 (40%), Positives = 99/195 (50%)
Query: 44 TWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTRE 103
TW T S +W++L+NLTPQIDGSTL+TLC+QHGPL FHL L A+ +YS++E
Sbjct: 1625 TWSTDSSSR--STSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKE 1682
Query: 104 EAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXXXXXXXXWAR----G 159
EA KAQ +L+ C+LGNTTI AE + EV A R G
Sbjct: 1683 EAAKAQKSLHMCVLGNTTILAEFAGEEEVNRFFAQGQSLTPTTSWQANPGTNQTRLGGGG 1742
Query: 160 SSALSNKDTWXXXXXXXNTSQLW--GTPSNPSS-GG-----SLWGAPPL-DSVDRATPSS 210
++A W + G SN GG SLWG P D +P+
Sbjct: 1743 TAATHPIGHWNSSSLGGGGAGTGSGGKASNELLWGGVPQYSSLWGPPSAEDGRVVGSPTP 1802
Query: 211 LNSFLPGDLLGGESM 225
+N+ LPGDLL GESM
Sbjct: 1803 INTLLPGDLLSGESM 1817
Score = 40 (19.1 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 28 SNGWMVRPNXXXXXXNTWGT---SQPQGGWSGTW 58
S+GW P WG + G S TW
Sbjct: 697 SHGWGNGPGGESGSGGEWGEPGDGKKNGPSSSTW 730
Score = 34 (17.0 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 43 NTWGTSQPQGGWSGTW 58
++WG + G +G W
Sbjct: 997 DSWGGGEDMGLSAGQW 1012
>ZFIN|ZDB-GENE-070705-475 [details] [associations]
symbol:si:dkey-46g23.1 "si:dkey-46g23.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR012677 InterPro:IPR026804 ZFIN:ZDB-GENE-070705-475
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:BX322654 IPI:IPI00900135 PRIDE:F1QG93
Ensembl:ENSDART00000140482 Bgee:F1QG93 Uniprot:F1QG93
Length = 1443
Score = 243 (90.6 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 49/89 (55%), Positives = 61/89 (68%)
Query: 52 GGWSG--TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQ 109
GG S +W+LL+NLTPQIDGSTL+T+C+QHGPL FHL L AL +Y + EA KAQ
Sbjct: 1246 GGASAGKSWLLLRNLTPQIDGSTLRTICLQHGPLLTFHLGLTQGSALIRYCSPHEAAKAQ 1305
Query: 110 GNLNNCILGNTTIFAEAPSDAEVQSLLAH 138
L+ C+LGNTTI AE S+ +V H
Sbjct: 1306 SALHMCVLGNTTILAEFMSEEDVIRYFTH 1334
Score = 69 (29.3 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 181 LWGTPSNPSSGGSLWGAPPLDSVDRATPSSLNSFLPGDLLGG 222
+WG + G SLWGAP L+ LPG+LLGG
Sbjct: 1404 VWGGVAPGYHGSSLWGAPQLED-------GTAGLLPGNLLGG 1438
Score = 49 (22.3 bits), Expect = 6.7e-23, Sum P(3) = 6.7e-23
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 156 WARGSSALSNKDTWXXXXXXXNTSQLWGTPS-NPSSGGSLWG 196
W+ + + K W + S LWG P + G L G
Sbjct: 1392 WSNNAGEGAGKGVWGGVAPGYHGSSLWGAPQLEDGTAGLLPG 1433
Score = 39 (18.8 bits), Expect = 5.8e-25, Sum P(3) = 5.8e-25
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 28 SNGWMVRPNXXXXXXNTWGTSQPQGGWSGTW 58
+ GW WG+ + G SG W
Sbjct: 538 AGGWK-EEKGTNQNEGLWGSPEDSGPRSGGW 567
>RGD|621428 [details] [associations]
symbol:Tnrc6b "trinucleotide repeat containing 6B" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR012677
InterPro:IPR026804 RGD:621428 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0031047 PANTHER:PTHR31070 IPI:IPI00389253 EMBL:AF275151
UniGene:Rn.17120 ProteinModelPortal:Q9JHZ1 STRING:Q9JHZ1
UCSC:RGD:621428 HOVERGEN:HBG073539 InParanoid:Q9JHZ1
ArrayExpress:Q9JHZ1 Genevestigator:Q9JHZ1 Uniprot:Q9JHZ1
Length = 249
Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
Identities = 79/214 (36%), Positives = 103/214 (48%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 40 GWGTQ-DSRIASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 93
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
HL L AL +YST++EA KAQ L+ C+LGNTTI AE ++ EV LA +
Sbjct: 94 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATEDEVSRFLAQ-AQPPTPA 152
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQ---LWGTPSNPSSGG-----SLWGAP 198
W ++ + D S W + + SSG SLWG P
Sbjct: 153 ATPSAPATGWQSLETSQNQADPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGTSLWGPP 212
Query: 199 PLDS----VDRAT-PSSLNS---FLPGDLLGGES 224
S V P + S LPGDLLGG S
Sbjct: 213 NYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGS 246
>UNIPROTKB|F1SRA3 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR012677
InterPro:IPR026804 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:CU639392 EMBL:CU468648 Ensembl:ENSSSCT00000000084
OMA:GGMKDPG Uniprot:F1SRA3
Length = 811
Score = 282 (104.3 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 80/214 (37%), Positives = 103/214 (48%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 602 GWGTQ-DSRLASGSTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 655
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
HL L AL +YST++EA KAQ L+ C+LGNTTI AE +D EV LA +
Sbjct: 656 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLAQ-AQPPTPA 714
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQLWGTPSNPSSGGS--------LWGAP 198
W ++ + D S G S+ + GGS LWG P
Sbjct: 715 ATPSAPAAGWQSLETSQTQSDPVGPALNLFGGSTGLGQWSSSAGGGSGADLAGASLWGPP 774
Query: 199 PLDS----VDRAT-PSSLNS---FLPGDLLGGES 224
S V P + S LPGDLLGG S
Sbjct: 775 NYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGS 808
>UNIPROTKB|E1BQG1 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 OMA:NETGRQP EMBL:AADN02006085 EMBL:AADN02006086
IPI:IPI00600394 Ensembl:ENSGALT00000019682 Uniprot:E1BQG1
Length = 1715
Score = 285 (105.4 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 78/211 (36%), Positives = 97/211 (45%)
Query: 30 GWMVRPNXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY 89
GW + + +TW S W++L NLTPQIDGSTL+T+C+QHGPL FHL
Sbjct: 1506 GWGAQ-DSRLASASTW--SDGSSVRPSYWLVLHNLTPQIDGSTLRTICMQHGPLLTFHLN 1562
Query: 90 LNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXXXXX 149
L AL +Y+T++EA KAQ L+ C+LGNTTI AE +D EV L +
Sbjct: 1563 LTQGTALIRYNTKQEAAKAQTALHMCVLGNTTILAEFATDEEVSRFLTQ-AQPPTPAATP 1621
Query: 150 XXXXXXWARGSSALSNKDTWXXXXXXXNTSQ---LWGTPSNPSSGG-----SLWGAPPLD 201
W + + D S W + SSGG SLWG P
Sbjct: 1622 SAPTAGWQSLETGQNQTDPVGPALNLFGGSTGLGQWSSGGGGSSGGDLTGASLWGPPNYS 1681
Query: 202 SVDRATPS--------SLNSFLPGDLLGGES 224
S PS S LPGDLLGG S
Sbjct: 1682 SSLWGVPSVEDPHRMGSPAPLLPGDLLGGGS 1712
>UNIPROTKB|F1PND4 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:AAEX03007304 EMBL:AAEX03007305
Ensembl:ENSCAFT00000001986 Uniprot:F1PND4
Length = 1725
Score = 285 (105.4 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 80/214 (37%), Positives = 102/214 (47%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 1516 GWGTQ-DSRLASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 1569
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
HL L AL +YST++EA KAQ L+ C+LGNTTI AE +D EV LA +
Sbjct: 1570 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLAQ-AQPPTPA 1628
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQ---LWGTPSNPSSGG-----SLWGAP 198
W + + D S W + + SSG SLWG P
Sbjct: 1629 ATPSAPAAGWQSLETGQTQSDPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPP 1688
Query: 199 PLDS----VDRAT-PSSLNS---FLPGDLLGGES 224
S V P + S LPGDLLGG S
Sbjct: 1689 NYSSSLWGVPAVEDPHRMGSPAPLLPGDLLGGGS 1722
>UNIPROTKB|Q9UPQ9 [details] [associations]
symbol:TNRC6B "Trinucleotide repeat-containing gene 6B
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IEA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0007219 "Notch signaling pathway" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
PROSITE:PS50102 GO:GO:0005829 Reactome:REACT_111102
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0010467
GO:GO:0006417 GO:GO:0000166 EMBL:CH471095 Gene3D:3.30.70.330
GO:GO:0007219 GO:GO:0003723 GO:GO:0031047 GO:GO:0000932
SUPFAM:SSF46934 InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427
EMBL:AL022238 HOVERGEN:HBG062594 HOGENOM:HOG000049171 EMBL:AB029016
EMBL:AK294519 EMBL:Z93783 EMBL:AL031589 EMBL:BC028626
IPI:IPI00152296 IPI:IPI00873067 IPI:IPI00940033
RefSeq:NP_001020014.1 RefSeq:NP_001155973.1 RefSeq:NP_055903.2
UniGene:Hs.372082 ProteinModelPortal:Q9UPQ9 SMR:Q9UPQ9
DIP:DIP-29624N DIP:DIP-44174N IntAct:Q9UPQ9 MINT:MINT-2822586
STRING:Q9UPQ9 PhosphoSite:Q9UPQ9 DMDM:229904901 PaxDb:Q9UPQ9
PRIDE:Q9UPQ9 Ensembl:ENST00000301923 Ensembl:ENST00000335727
Ensembl:ENST00000402203 Ensembl:ENST00000454349 GeneID:23112
KEGG:hsa:23112 UCSC:uc003aym.3 UCSC:uc003ayn.4 UCSC:uc003ayo.3
CTD:23112 GeneCards:GC22P040440 HGNC:HGNC:29190 HPA:HPA003180
MIM:610740 neXtProt:NX_Q9UPQ9 PharmGKB:PA134992981 eggNOG:NOG260411
OMA:NETGRQP ChiTaRS:TNRC6B GenomeRNAi:23112 NextBio:44311
ArrayExpress:Q9UPQ9 Bgee:Q9UPQ9 CleanEx:HS_TNRC6B
Genevestigator:Q9UPQ9 GermOnline:ENSG00000100354 Uniprot:Q9UPQ9
Length = 1833
Score = 285 (105.4 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 80/214 (37%), Positives = 102/214 (47%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 1624 GWGTQ-DSRLASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 1677
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
HL L AL +YST++EA KAQ L+ C+LGNTTI AE +D EV LA +
Sbjct: 1678 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLAQ-AQPPTPA 1736
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQ---LWGTPSNPSSGG-----SLWGAP 198
W + + D S W + + SSG SLWG P
Sbjct: 1737 ATPSAPAAGWQSLETGQNQSDPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPP 1796
Query: 199 PLDS----VDRAT-PSSLNS---FLPGDLLGGES 224
S V P + S LPGDLLGG S
Sbjct: 1797 NYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGS 1830
>UNIPROTKB|J9NXD6 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 EMBL:AAEX03007304 EMBL:AAEX03007305
Ensembl:ENSCAFT00000047971 Uniprot:J9NXD6
Length = 1838
Score = 285 (105.4 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 80/214 (37%), Positives = 102/214 (47%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 1629 GWGTQ-DSRLASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 1682
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
HL L AL +YST++EA KAQ L+ C+LGNTTI AE +D EV LA +
Sbjct: 1683 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLAQ-AQPPTPA 1741
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQ---LWGTPSNPSSGG-----SLWGAP 198
W + + D S W + + SSG SLWG P
Sbjct: 1742 ATPSAPAAGWQSLETGQTQSDPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPP 1801
Query: 199 PLDS----VDRAT-PSSLNS---FLPGDLLGGES 224
S V P + S LPGDLLGG S
Sbjct: 1802 NYSSSLWGVPAVEDPHRMGSPAPLLPGDLLGGGS 1835
>UNIPROTKB|F1MY06 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 OMA:NETGRQP EMBL:DAAA02014709 IPI:IPI00711947
UniGene:Bt.41131 Ensembl:ENSBTAT00000028072 NextBio:20874758
Uniprot:F1MY06
Length = 1836
Score = 284 (105.0 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 78/213 (36%), Positives = 103/213 (48%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 1627 GWGTQ-DSRLASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 1680
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
HL L AL +YST++EA KAQ L+ C+LGNTTI AE +D EV LA
Sbjct: 1681 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLAQAQPPTPAA 1740
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQL--WGTPSNPSSGG-----SLWGAPP 199
+ + ++ ++ L W + + SSG SLWG P
Sbjct: 1741 TPSAPAAGWQSLETGQTQSEPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGASLWGPPN 1800
Query: 200 LDS----VDRAT-PSSLNS---FLPGDLLGGES 224
S V P + S LPGDLLGG S
Sbjct: 1801 YSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGS 1833
>UNIPROTKB|F1LSM1 [details] [associations]
symbol:Tnrc6b "Protein Tnrc6b" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804 RGD:621428
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 SUPFAM:SSF46934
InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427 IPI:IPI00389253
Ensembl:ENSRNOT00000037695 ArrayExpress:F1LSM1 Uniprot:F1LSM1
Length = 1752
Score = 281 (104.0 bits), Expect = 5.1e-23, P = 5.1e-23
Identities = 79/214 (36%), Positives = 103/214 (48%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 1543 GWGTQ-DSRIASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 1596
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
HL L AL +YST++EA KAQ L+ C+LGNTTI AE ++ EV LA +
Sbjct: 1597 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATEDEVSRFLAQ-AQPPTPA 1655
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQ---LWGTPSNPSSGG-----SLWGAP 198
W ++ + D S W + + SSG SLWG P
Sbjct: 1656 ATPSAPATGWQSLETSQNQADPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGTSLWGPP 1715
Query: 199 PLDS----VDRAT-PSSLNS---FLPGDLLGGES 224
S V P + S LPGDLLGG S
Sbjct: 1716 NYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGS 1749
>MGI|MGI:2443730 [details] [associations]
symbol:Tnrc6b "trinucleotide repeat containing 6b"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0031047 "gene
silencing by RNA" evidence=IEA] InterPro:IPR009060
InterPro:IPR012677 InterPro:IPR026804 PROSITE:PS50102
MGI:MGI:2443730 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0031047 GO:GO:0000932 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 PANTHER:PTHR31070
Pfam:PF10427 HOGENOM:HOG000049171 CTD:23112 eggNOG:NOG260411
OMA:NETGRQP ChiTaRS:TNRC6B EMBL:AC125540 EMBL:AC126682
EMBL:AK051922 EMBL:AK122440 IPI:IPI00226311 IPI:IPI00454102
RefSeq:NP_659061.2 UniGene:Mm.131328 UniGene:Mm.412092
ProteinModelPortal:Q8BKI2 SMR:Q8BKI2 DIP:DIP-48568N STRING:Q8BKI2
PhosphoSite:Q8BKI2 PaxDb:Q8BKI2 PRIDE:Q8BKI2
Ensembl:ENSMUST00000067689 GeneID:213988 KEGG:mmu:213988
UCSC:uc007wvt.1 UCSC:uc007wvu.2 InParanoid:Q80TK4 OrthoDB:EOG4G4GQJ
NextBio:374148 Bgee:Q8BKI2 Genevestigator:Q8BKI2 Uniprot:Q8BKI2
Length = 1810
Score = 281 (104.0 bits), Expect = 5.3e-23, P = 5.3e-23
Identities = 79/214 (36%), Positives = 103/214 (48%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 1601 GWGTQ-DSRIASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 1654
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLAHLSXXXXXX 146
HL L AL +YST++EA KAQ L+ C+LGNTTI AE ++ EV LA +
Sbjct: 1655 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATEDEVSRFLAQ-AQPPTPA 1713
Query: 147 XXXXXXXXXWARGSSALSNKDTWXXXXXXXNTSQ---LWGTPSNPSSGG-----SLWGAP 198
W ++ + D S W + + SSG SLWG P
Sbjct: 1714 ATPSAPATGWQSLETSQNQADPVGPALNLFGGSTGLGQWSSSAGGSSGADLAGTSLWGPP 1773
Query: 199 PLDS----VDRAT-PSSLNS---FLPGDLLGGES 224
S V P + S LPGDLLGG S
Sbjct: 1774 NYSSSLWGVPTVEDPHRMGSPAPLLPGDLLGGGS 1807
>UNIPROTKB|J9JHC8 [details] [associations]
symbol:TNRC6B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0009152 "purine ribonucleotide biosynthetic
process" evidence=IEA] [GO:0004018 "N6-(1,2-dicarboxyethyl)AMP
AMP-lyase (fumarate-forming) activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004769
InterPro:IPR008948 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR020557 PROSITE:PS00163 GO:GO:0000166 Gene3D:3.30.70.330
Gene3D:1.10.275.10 InterPro:IPR024083 InterPro:IPR022761
Pfam:PF00206 SUPFAM:SSF48557 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR019486 Pfam:PF10427
GO:GO:0009152 GO:GO:0004018 InterPro:IPR019468
PANTHER:PTHR11444:SF2 Pfam:PF10397 SMART:SM00998 TIGRFAMs:TIGR00928
EMBL:AAEX03007304 EMBL:AAEX03007305 Ensembl:ENSCAFT00000045467
Uniprot:J9JHC8
Length = 2211
Score = 260 (96.6 bits), Expect = 1.2e-20, P = 1.2e-20
Identities = 55/111 (49%), Positives = 71/111 (63%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 1606 GWGTQ-DSRLASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 1659
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEVQSLLA 137
HL L AL +YST++EA KAQ L+ C+LGNTTI AE +D EV LA
Sbjct: 1660 HLNLTQGTALIRYSTKQEAAKAQTALHMCVLGNTTILAEFATDDEVSRFLA 1710
>UNIPROTKB|I3LUA8 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR009060 InterPro:IPR012677 InterPro:IPR026804
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0031047 SUPFAM:SSF46934
GeneTree:ENSGT00410000025966 InterPro:IPR026805 PANTHER:PTHR31070
Pfam:PF12938 Ensembl:ENSSSCT00000026949 Uniprot:I3LUA8
Length = 1472
Score = 257 (95.5 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 53/112 (47%), Positives = 72/112 (64%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1327 SSTWGASPLGWTSSYSSGSAWSTDT--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLI 1384
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE-APSDAEVQSL 135
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE A + + Q+L
Sbjct: 1385 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEXQGQAL 1436
>UNIPROTKB|I3LK32 [details] [associations]
symbol:TNRC6C "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060964 "regulation of gene silencing by miRNA"
evidence=IEA] [GO:0035162 "embryonic hemopoiesis" evidence=IEA]
[GO:0001706 "endoderm formation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 InterPro:IPR015940 PROSITE:PS50030 GO:GO:0031047
SUPFAM:SSF46934 GeneTree:ENSGT00410000025966 InterPro:IPR026805
PANTHER:PTHR31070 Pfam:PF12938 OMA:WDADSNR
Ensembl:ENSSSCT00000025059 Uniprot:I3LK32
Length = 1485
Score = 257 (95.5 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 53/112 (47%), Positives = 72/112 (64%)
Query: 28 SNGWMVRP---NXXXXXXNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQ 84
S+ W P + W T G + +W++L+NLTPQIDGSTL+TLC+QHGPL
Sbjct: 1341 SSTWGASPLGWTSSYSSGSAWSTDT--SGRTSSWLVLRNLTPQIDGSTLRTLCLQHGPLI 1398
Query: 85 NFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAE-APSDAEVQSL 135
FHL L A+ +YS++EEA KAQ +L+ C+LGNTTI AE A + + Q+L
Sbjct: 1399 TFHLNLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEXQGQAL 1450
>UNIPROTKB|I3LGC4 [details] [associations]
symbol:TNRC6A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035278 "negative regulation of translation involved in
gene silencing by miRNA" evidence=IEA] [GO:0035068
"micro-ribonucleoprotein complex" evidence=IEA] [GO:0009267
"cellular response to starvation" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR012677
InterPro:IPR026804 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009267
GO:GO:0000932 GO:GO:0035068 GO:GO:0035278
GeneTree:ENSGT00410000025966 PANTHER:PTHR31070
Ensembl:ENSSSCT00000022997 OMA:GQNQNDP Uniprot:I3LGC4
Length = 161
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 62/162 (38%), Positives = 81/162 (50%)
Query: 78 VQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCILGNTTIFAEAPSDAEV----- 132
+QHGPL FHL L H AL +YS++EE +KAQ +L+ C+LGNTTI AE S+ E+
Sbjct: 1 MQHGPLITFHLNLPHGNALVRYSSKEEVVKAQKSLHMCVLGNTTILAEFASEEEISRFFA 60
Query: 133 --QSLLAHLSXXXXXXXXXXXXXXXWARGSSALSNKDTWXXXXXX-XNTSQLWGTP--SN 187
QSL S + S+ ++ + W N L GT
Sbjct: 61 QSQSLTPSPSWQSLGSSQSRLGSLDCSHSFSSRTDLNHWNGAGLSGTNCGDLHGTSLWGT 120
Query: 188 PSSGGSLWGAPPLDSVDR--ATPSSLNSFLPGDLLGG--ESM 225
P SLWG PP S R ++PS +N+FL D LGG ESM
Sbjct: 121 PHYSTSLWG-PPSSSDPRGISSPSPINAFLSVDHLGGGGESM 161
>UNIPROTKB|H3BRT3 [details] [associations]
symbol:TNRC6A "Trinucleotide repeat-containing gene 6A
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] InterPro:IPR012677 InterPro:IPR026804 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0031047 PANTHER:PTHR31070 EMBL:AC008731
EMBL:AC002565 HGNC:HGNC:11969 ChiTaRS:TNRC6A
Ensembl:ENST00000569098 Bgee:H3BRT3 Uniprot:H3BRT3
Length = 160
Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 41/71 (57%), Positives = 53/71 (74%)
Query: 43 NTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTR 102
++WG S G W++LKNLTPQIDGSTL+TLC+QHGPL FHL L H AL +YS++
Sbjct: 83 SSWGESS--SGRITNWLVLKNLTPQIDGSTLRTLCMQHGPLITFHLNLPHGNALVRYSSK 140
Query: 103 EEAIKAQGNLN 113
EE +KAQ +L+
Sbjct: 141 EEVVKAQKSLH 151
>UNIPROTKB|H0Y720 [details] [associations]
symbol:TNRC6B "Trinucleotide repeat-containing gene 6B
protein" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0031047 "gene silencing by RNA"
evidence=IEA] InterPro:IPR009060 InterPro:IPR012677
InterPro:IPR026804 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
SUPFAM:SSF46934 InterPro:IPR019486 PANTHER:PTHR31070 Pfam:PF10427
EMBL:AL022238 EMBL:Z93783 EMBL:AL031589 HGNC:HGNC:29190
ChiTaRS:TNRC6B EMBL:AL033547 EMBL:Z83847 PRIDE:H0Y720
Ensembl:ENST00000446273 Bgee:H0Y720 Uniprot:H0Y720
Length = 1391
Score = 193 (73.0 bits), Expect = 8.8e-14, P = 8.8e-14
Identities = 41/87 (47%), Positives = 55/87 (63%)
Query: 30 GWMVRPNXXXXXXNTW---GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNF 86
GW + + +TW G+ +P W++L NLTPQIDGSTL+T+C+QHGPL F
Sbjct: 1310 GWGTQ-DSRLASASTWSDGGSVRPS-----YWLVLHNLTPQIDGSTLRTICMQHGPLLTF 1363
Query: 87 HLYLNHSLALAKYSTREEAIKAQGNLN 113
HL L AL +YST++EA KAQ L+
Sbjct: 1364 HLNLTQGTALIRYSTKQEAAKAQTALH 1390
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.128 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 225 177 0.00084 109 3 11 23 0.37 33
31 0.50 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 39
No. of states in DFA: 597 (63 KB)
Total size of DFA: 169 KB (2097 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.42u 0.09s 14.51t Elapsed: 00:00:03
Total cpu time: 14.43u 0.09s 14.52t Elapsed: 00:00:03
Start: Thu Aug 15 15:33:16 2013 End: Thu Aug 15 15:33:19 2013