RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10308
(225 letters)
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 42.6 bits (100), Expect = 2e-06
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCI 116
+ + + NL P I ++ L ++G ++ + + TR A A+ L+N
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 68
Query: 117 LGNTTIFAE-APSDA 130
L + A A
Sbjct: 69 LRGKQLRVRFACHSA 83
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 36.8 bits (85), Expect = 2e-04
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 9/88 (10%)
Query: 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN-------HSLALAKYSTREEAIK 107
+ + +L++N+ Q + ++ L G L+ L + T+++A K
Sbjct: 7 TTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKK 66
Query: 108 AQGNLNN-CILGNTTIFAE-APSDAEVQ 133
A L + L + E A S+ VQ
Sbjct: 67 AFNALCHSTHLYGRRLVLEWADSEVTVQ 94
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 37.3 bits (86), Expect = 3e-04
Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSL---ALAKYSTREEAIKAQGNLNNC 115
+ ++NL +I + + ++GP++ + A Y +A A +L+
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 69
Query: 116 ILGNTTI 122
+ N +
Sbjct: 70 NVCNRYL 76
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 36.9 bits (85), Expect = 3e-04
Identities = 10/61 (16%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS--LALAKYSTREEAIKAQGNLNNCI 116
++++NL + L + + G + + ++ AL +Y+ A A+ +L+
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 69
Query: 117 L 117
+
Sbjct: 70 I 70
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 35.4 bits (81), Expect = 6e-04
Identities = 13/78 (16%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSL----ALAKYSTREEAIKAQGNLNN 114
+ + NL+ + + L Q GP ++ + H+ ++ +A A +N
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNG 70
Query: 115 CILGNTTI---FAEAPSD 129
+ + +A PS
Sbjct: 71 RKILGKEVKVNWATTPSS 88
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 35.5 bits (81), Expect = 6e-04
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 10/83 (12%)
Query: 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS------LALAKYSTREEAIKA 108
S T +++ L + ++L G +++ L + Y ++A KA
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 109 QGNLNNCILGNTTI---FAEAPS 128
LN L TI +A PS
Sbjct: 61 INTLNGLRLQTKTIKVSYAR-PS 82
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 34.9 bits (80), Expect = 0.001
Identities = 9/67 (13%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 62 KNLTPQIDGSTLKTLCVQHGPLQNFHL------YLNHSLALAKYSTREEAIKAQGNLNNC 115
+L P + + L GP+ + + + A + +A +A +N
Sbjct: 6 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 65
Query: 116 ILGNTTI 122
++ +
Sbjct: 66 VIKGKPV 72
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 34.9 bits (80), Expect = 0.001
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS------LALAKYSTREEAIKA 108
T + + NL I L T+ ++G + ++ + +A +Y+ REEA +A
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 109 QGNLNNCIL 117
LNN I
Sbjct: 65 ISALNNVIP 73
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 34.7 bits (79), Expect = 0.001
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 50 PQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTRE 103
PQ G + + ++ + ++ +G ++N HL L + AL +Y T +
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 104 EAIKAQGNLNNCILGNTTI 122
+A+ A+ LN + TI
Sbjct: 61 QALAAKEALNGAEIMGQTI 79
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 34.2 bits (78), Expect = 0.002
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 55 SGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSL------ALAKYSTREEAIKA 108
S T +++ L + L L GP+ + ++ A +++ ++ +A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 109 QGNLNNCILGNTTI 122
LN + N +
Sbjct: 61 IKVLNGITVRNKRL 74
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 34.2 bits (78), Expect = 0.002
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 12/79 (15%)
Query: 62 KNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSL---------ALAKYSTREEAIKAQGNL 112
KNL TLK + + G +++ + + +Y E+A KA L
Sbjct: 4 KNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 63
Query: 113 NNCILGNTTI---FAEAPS 128
+ + +E +
Sbjct: 64 QGHTVDGHKLEVRISERAT 82
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 33.8 bits (77), Expect = 0.002
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 62 KNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALA-----KYSTREEAIKAQGNLNNCI 116
NL + + ++ L + G L+ ++ + S + + +A+KA N
Sbjct: 6 SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP 65
Query: 117 LGNTTIFAE-APS 128
L + + S
Sbjct: 66 LDGRPMNIQLVTS 78
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 33.9 bits (77), Expect = 0.002
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS------LALAKYSTREEAIKAQGNL 112
+ + L ++D L + G + + + L++ A ++ E+A A N+
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 113 NNCILGNTTI 122
N L TI
Sbjct: 68 NESELFGRTI 77
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 33.9 bits (77), Expect = 0.003
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNNCI 116
V L + + L + + G + + N + A+Y T EE+ +A LN
Sbjct: 21 LVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKE 80
Query: 117 L 117
+
Sbjct: 81 V 81
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 33.4 bits (76), Expect = 0.003
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 56 GTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAK------YSTREEAIKAQ 109
+ + NL+ + L + G ++ + L+ A Y +R +A A
Sbjct: 7 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 110 GNLNNCILGNTTIFAE-APSDAE 131
+N L + I + E
Sbjct: 67 RYINGTRLDDRIIRTDWDAGFKE 89
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 33.1 bits (75), Expect = 0.005
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL----YLNHSLALAKYSTREEAIKAQGNLNN 114
+ +KNL ID L G + + + + + T+E A +A +N
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 70
Query: 115 CILGNTTI 122
+L + +
Sbjct: 71 MLLNDRKV 78
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 33.1 bits (75), Expect = 0.006
Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 10/82 (12%)
Query: 59 VLLKNLTPQIDGSTLK----TLCVQHGPLQNFHL---YLNHSLALAKYSTREEAIKAQGN 111
+ + NL +I LK + + G + + + A + A A +
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 112 LNNCILGNTTI---FAEAPSDA 130
+ + + +A+ SD
Sbjct: 66 MQGFPFYDKPMRIQYAKTDSDI 87
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 32.7 bits (74), Expect = 0.006
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 36 NGGGGGGNTWGTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLA 95
+ G G +G + P T + + L P + L + G ++ S A
Sbjct: 2 SSGSSGKIGYGKANP-----TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFA 56
Query: 96 LAKYSTREEAIKAQGNLNNCILGNTTI 122
+Y + + A A + LG
Sbjct: 57 YIQYESLDAAQAACAKMRGFPLGGPDR 83
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 32.7 bits (74), Expect = 0.007
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS------LALAKYSTREEAIKAQGNL 112
+ + L ++ +K L GPL+ F+L + + A +Y +A L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 113 NNCILGNTTI 122
N LG+ +
Sbjct: 64 NGMQLGDKKL 73
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 31.7 bits (71), Expect = 0.011
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPL------QNFHLYLNHSLALAKYSTREEAIKAQGNL 112
+ + N P ++ L + + + A +++E+A L
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 113 NNCILGNTTI 122
N + T+
Sbjct: 64 NGLKIEGYTL 73
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.2 bits (70), Expect = 0.022
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 57 TWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQG 110
+ + NL+ + L+ L G + +L + A + RE+A +A
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 111 NLNNCILGNTTI---FAEAPSD 129
++ + + +A+ ++
Sbjct: 69 GVSGFGYDHLILNVEWAKPSTN 90
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 31.0 bits (70), Expect = 0.033
Identities = 10/82 (12%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 42 GNTWGTSQPQGGWSGTWVLLKNLTP-QIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS 100
G++ + + + V + NL + S ++ + ++G + ++ A +Y
Sbjct: 1 GSSGSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGF--AFVQYV 58
Query: 101 TREEAIKAQGNLNNCILGNTTI 122
A A + ++ +
Sbjct: 59 NERNARAAVAGEDGRMIAGQVL 80
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 30.7 bits (69), Expect = 0.044
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 13/80 (16%)
Query: 59 VLLKNLTPQIDGST-----------LKTLCVQHGPLQNFHLYLNHS--LALAKYSTREEA 105
V++KN+ +D L+ C + G ++ L+ H +A + EEA
Sbjct: 11 VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEA 70
Query: 106 IKAQGNLNNCILGNTTIFAE 125
L+ G I A+
Sbjct: 71 DYCIQTLDGRWFGGRQITAQ 90
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 30.0 bits (67), Expect = 0.062
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKYSTREEAIKAQGNL 112
V + L ++ L L +Q GP+ N H+ + ++ + E+A A +
Sbjct: 12 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIM 71
Query: 113 NNCILGNTTI 122
+ L I
Sbjct: 72 DMIKLYGKPI 81
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 29.7 bits (66), Expect = 0.082
Identities = 6/64 (9%), Positives = 14/64 (21%), Gaps = 8/64 (12%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHG--------PLQNFHLYLNHSLALAKYSTREEAIKAQG 110
+ + + + + N A +Y + A A+
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 111 NLNN 114
L
Sbjct: 64 KLMP 67
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 28.9 bits (64), Expect = 0.14
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS------LALAKYSTREEAIKAQGNL 112
+ + L+ L+ + ++GP+ + + + A + ++A +A+
Sbjct: 12 LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 71
Query: 113 NNCILGNTTI 122
N L I
Sbjct: 72 NGMELDGRRI 81
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 28.6 bits (63), Expect = 0.15
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 6/70 (8%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHS------LALAKYSTREEAIKAQGNL 112
+ ++ L P L LC +G + + L+ + + + A KA L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 113 NNCILGNTTI 122
+
Sbjct: 61 KASGVQAQMA 70
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.9 bits (64), Expect = 0.17
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 48 SQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLY------LNHSLALAKYST 101
SQ +G G + + +L + L + + G + + ++ L+ Y
Sbjct: 11 SQKEGP-EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 69
Query: 102 REEAIKAQGNLNNCILGNTTI---FAEAPSDA 130
A A ++N +G + + +D+
Sbjct: 70 PVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 28.1 bits (62), Expect = 0.27
Identities = 9/68 (13%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLN----HSLALAKYSTREEAIKAQGNLNN 114
+ + N+ + L+ + Q G + + + N + +A +A+ L+
Sbjct: 14 LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHG 73
Query: 115 CILGNTTI 122
++ I
Sbjct: 74 TVVEGRKI 81
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 27.7 bits (61), Expect = 0.31
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTREEAIKAQGNLNN 114
+ + NL+P + L+ L + L A Y + AI+A L+
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSG 59
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 27.8 bits (61), Expect = 0.37
Identities = 9/87 (10%), Positives = 19/87 (21%), Gaps = 14/87 (16%)
Query: 50 PQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHL--------------YLNHSLA 95
P + + ++ L + L Q G ++ A
Sbjct: 2 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDA 61
Query: 96 LAKYSTREEAIKAQGNLNNCILGNTTI 122
Y A A + + +
Sbjct: 62 TVSYEDPPTAKAAVEWFDGKDFQGSKL 88
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.6 bits (61), Expect = 0.46
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 95 ALAKYSTREEAIKAQGNLNNCILGNTTIFAE 125
++++ + KA L N + +
Sbjct: 61 IFVEFTSVFDCQKAMQGLTGRKFANRVVVTK 91
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 26.6 bits (58), Expect = 0.96
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 46 GTSQPQGGWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYL------NHSLALAKY 99
G+S G SG + ++NL+ L+ L +GPL H + A +
Sbjct: 1 GSSGSSG--SGR-LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTF 57
Query: 100 STREEAIKAQGNLNNCILGNTTI 122
E A+KA ++ + +
Sbjct: 58 MFPEHAVKAYAEVDGQVFQGRML 80
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.6 bits (58), Expect = 1.1
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSL------ALAKYSTREEAIKAQGNL 112
V + N+ + LK + + GP+ +F L + +Y +E A+ A NL
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 113 NNCILGNTTI---FAEAPSDAE 131
N + A + + E
Sbjct: 71 NGREFSGRALRVDNAASEKNKE 92
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 26.5 bits (58), Expect = 1.2
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 59 VLLKNLTPQIDGSTLKTLCVQHGPLQNFHL-YLNHSLALAKYSTREEAIKAQGNLNNCIL 117
+L KNL+ I LK + ++ + +A ++ + +A K +
Sbjct: 19 LLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78
Query: 118 GNTTI 122
++
Sbjct: 79 DGRSV 83
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4
[TaxId: 10665]}
Length = 286
Score = 27.0 bits (59), Expect = 1.8
Identities = 9/63 (14%), Positives = 13/63 (20%), Gaps = 4/63 (6%)
Query: 45 WGTSQPQGGWSGT----WVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYS 100
Q L + N H+Y+NH +
Sbjct: 171 LQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEIL 230
Query: 101 TRE 103
RE
Sbjct: 231 RRE 233
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli
[TaxId: 562]}
Length = 264
Score = 26.2 bits (57), Expect = 3.1
Identities = 9/51 (17%), Positives = 13/51 (25%)
Query: 53 GWSGTWVLLKNLTPQIDGSTLKTLCVQHGPLQNFHLYLNHSLALAKYSTRE 103
G L + + + HLY NH +RE
Sbjct: 173 GLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSRE 223
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 25.8 bits (56), Expect = 4.1
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 78 VQHGPLQNFHLYLNHSLALAKYSTRE 103
+ HLY+NH + + +R
Sbjct: 250 EFIHTFGDAHLYVNHLDQIKEQLSRT 275
>d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId:
1520]}
Length = 138
Score = 25.1 bits (54), Expect = 5.4
Identities = 10/49 (20%), Positives = 19/49 (38%)
Query: 114 NCILGNTTIFAEAPSDAEVQSLLAHLSATANNNNNNNGGTGGWARGSSA 162
ILG + + E ++E + + +S + G+ GW G
Sbjct: 48 ILILGCSAMTDEVLEESEFEPFIEEISTKISGKKVALFGSYGWGDGKWM 96
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.131 0.422
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 879,683
Number of extensions: 40226
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 47
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 51 (23.6 bits)