BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1031
(456 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 75/87 (86%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+ G+
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
+V R+G+VET+ DRPVDDVKI+K +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 5/58 (8%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
+MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ G GGAS
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGAS 76
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 75/87 (86%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+ G+
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
+V R+G+VET+ DRPVDDVKI+K +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 5/58 (8%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
+MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ G GGAS
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGAS 76
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 62/87 (71%), Positives = 75/87 (86%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLDGKH IFGR+ G+
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGI 136
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTH 451
+V R+G+VET+ DRPVDDVKI+K +
Sbjct: 137 GMVNRVGMVETNSQDRPVDDVKIIKAY 163
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 5/58 (8%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
+MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ G GGAS
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGAS 76
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 67/86 (77%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DEI++ELKHTGAGILSM+N+GP+TN SQFFITLAP LDGKH IF R+ M
Sbjct: 104 IYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLDGKHTIFARVSKNM 163
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
+ ++ I V+T ++P+ D+KIL+T
Sbjct: 164 TCIENIASVQTTATNKPIFDLKILRT 189
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 56 VFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGA 110
++ N+G+ VELYW H+P TC NF LC +Y+ FHR+I +F+IQ G GG
Sbjct: 43 IYTNLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGK 102
Query: 111 S 111
S
Sbjct: 103 S 103
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+TF DE + +LKH G G +SMAN+GPDTNGSQFFITL WLDGKH +FG++ GM
Sbjct: 82 IYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGM 140
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
+VV I L TD +DRP+ D I+ +
Sbjct: 141 TVVHSIELQATDGHDRPLTDCTIVNS 166
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELC--RRNY-YNGIKFHRIIRDFMIQAM------GVGG 109
++G I++ L+ P T NF L + Y Y G FHR+I+DFMIQ G GG
Sbjct: 20 DVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGG 79
Query: 110 AS 111
S
Sbjct: 80 MS 81
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ FADE + +KH G LSMAN+GP+TNGSQFFIT APT WLDG+H +FG++ GM
Sbjct: 86 IYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGRHVVFGKVLDGM 143
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
VV RI +T+ +DRPV VKI+ +
Sbjct: 144 DVVLRIEKTKTNSHDRPVKPVKIVAS 169
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNYYNGIK---FHRIIRDFMIQAM------GVGGA 110
+G I + L+ K AP T NF +LC + G K FHR+I++FMIQ G GG
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 111 S 111
S
Sbjct: 85 S 85
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/86 (56%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+TF DE + +LKH G G +SMAN+GPDTNGSQFFITL WLDGKH +FG++ GM
Sbjct: 90 IYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGM 148
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
+VV I L TD +DRP+ + I+ +
Sbjct: 149 TVVHSIELQATDGHDRPLTNCSIINS 174
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELC--RRNY-YNGIKFHRIIRDFMIQAM------GVGG 109
++G I++ L+ K P T NF L + Y Y G KFHR+I+DFMIQ G GG
Sbjct: 28 DVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQGGDITTGDGTGG 87
Query: 110 AS 111
S
Sbjct: 88 VS 89
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 63/86 (73%), Gaps = 2/86 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ FADE + +KH G LSMAN+GP+TNGSQFFIT APT WLDG H +FG++ GM
Sbjct: 86 IYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWLDGAHVVFGKVLDGM 143
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
VV RI +T+ +DRPV VKI+ +
Sbjct: 144 DVVLRIEKTKTNSHDRPVKPVKIVAS 169
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNYYNGIK---FHRIIRDFMIQAM------GVGGA 110
+G I + L+ K AP T NF +LC + G K FHR+I++FMIQ G GG
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 111 S 111
S
Sbjct: 85 S 85
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ FADE + +LKH GAG LSMAN+G DTNGSQFFIT T WLDG+H +FG+I GM
Sbjct: 81 IYGEKFADE-NFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGM 139
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKT 450
VV++I E DRP DV I +
Sbjct: 140 DVVRKIEQTEKLPGDRPKQDVIIAAS 165
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRR---NYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G I++ L+ K P T NF EL ++ Y G KFHR+I DFMIQ G GG
Sbjct: 20 IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGR 79
Query: 111 S 111
S
Sbjct: 80 S 80
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 98.2 bits (243), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT T WLDGKH +FG++ GM
Sbjct: 87 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 145
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
VV+++ +TD D+P+ DV I
Sbjct: 146 EVVRKVETTKTDGRDKPLKDVTI 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 58 HNMGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVG 108
++G +++ L+ K P T NF L + Y KFHR+I+DFMIQ G G
Sbjct: 24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTG 83
Query: 109 GAS 111
G S
Sbjct: 84 GKS 86
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT T WLDGKH +FG++ GM
Sbjct: 87 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 145
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
VV+++ +TD D+P+ DV I
Sbjct: 146 EVVRKVETTKTDGRDKPLKDVTI 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 58 HNMGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVG 108
++G +++ L+ K P T NF L + Y KFHR+I+DFMIQ G G
Sbjct: 24 EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTG 83
Query: 109 GAS 111
G S
Sbjct: 84 GKS 86
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
I+G F DE H L+H LSMAN+G +TNGSQFFIT+ PT WLD KH +FGR+ GM
Sbjct: 87 IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGM 146
Query: 425 SVVKRIGLVETD-KNDRPVDDVKILKTHVR 453
VV+RI V+ + K D+P +DV I+ V+
Sbjct: 147 EVVQRISNVKVNPKTDKPYEDVSIINITVK 176
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 15/89 (16%)
Query: 29 EKLAFSQAEICRRTVQFTVVEIILRSLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNY 87
E +A +QAE +R + S + H +MG+I +L+ P T NF R Y
Sbjct: 7 EVMAATQAEGPKR---------VSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY 57
Query: 88 YNGIKFHRIIRDFMIQ-----AMGVGGAS 111
YNG FHRII+ FMIQ G+GG S
Sbjct: 58 YNGHTFHRIIKGFMIQTGDPTGTGMGGES 86
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 59/90 (65%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
I+G F DE + L H+ ++SMAN GP+TNGSQFFIT P WLD KH +FG++ G
Sbjct: 71 IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGS 130
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTHVRN 454
+V I V TDK D+P++D+KIL + N
Sbjct: 131 KIVLDIEKVRTDKRDKPLEDIKILNIKINN 160
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 54 SLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVG 108
++++ MG+I + L++K T +NF+ YYN FHR+I+ FM+Q G G
Sbjct: 8 AIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGTG 67
Query: 109 GAS 111
G S
Sbjct: 68 GES 70
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT T WLDGKH +FG++ GM
Sbjct: 80 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 138
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
VV+++ +TD D+P+ DV I
Sbjct: 139 EVVRKVESTKTDSRDKPLKDVII 161
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 58 HNMGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVG 108
++G +I L+ K P T NF L + Y KFHR+I+DFMIQ G G
Sbjct: 17 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTG 76
Query: 109 GAS 111
G S
Sbjct: 77 GKS 79
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 60/83 (72%), Gaps = 1/83 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT T WLDGKH +FG++ GM
Sbjct: 90 IYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGM 148
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
VV+++ +TD D+P+ DV I
Sbjct: 149 EVVRKVESTKTDSRDKPLKDVII 171
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 58 HNMGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVG 108
++G +I L+ K P T NF L + Y KFHR+I+DFMIQ G G
Sbjct: 27 EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTG 86
Query: 109 GAS 111
G S
Sbjct: 87 GKS 89
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 366 YGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMS 425
+GK F DE L HTG GILSMANSGP++N SQFFIT +LD KH IFGR+ G
Sbjct: 86 WGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFD 145
Query: 426 VVKRIGLVETD-KNDRPVDDVKILKTHV 452
V+ + VE+D K DRP ++++I T V
Sbjct: 146 VLTAMENVESDPKTDRPKEEIRIDATTV 173
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
N G++ +EL+ P TC NF LC+++YY+G FHR IR+F+IQ
Sbjct: 27 NKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQ 71
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 91.7 bits (226), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE +E KHTG G+LSMAN+GP+TNGSQFF+ T+WLDGKH +FGR+ G+
Sbjct: 85 IYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
VVK + ++ +PV D I
Sbjct: 144 DVVKAV-ESNGSQSGKPVKDCMI 165
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 23/82 (28%)
Query: 53 RSLVFHNM-------GEIIVELYWKHAPNTCRNFAELCRRN----------YYNGIKFHR 95
RS VF ++ G I++ELY P T NF LC ++ G KFHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 96 IIRDFMIQAM------GVGGAS 111
II +FMIQ G GG S
Sbjct: 63 IIPNFMIQGGDFTRGNGTGGES 84
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 60/83 (72%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE + ++KH G +SMAN+GP++NGSQFF+T APT WLDG+H +FG++ GM
Sbjct: 80 IYGTRFDDE-NLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPWLDGRHVVFGKVVEGM 137
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
VVK++ +T ND+P VKI
Sbjct: 138 DVVKKVENTKTGLNDKPKKAVKI 160
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRN---YYNGIKFHRIIRDFMIQAM------GVGGA 110
+G +++ L+ P T NF +L Y G FHR+IR+FMIQ G GG
Sbjct: 19 VGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQGGDFTNFDGTGGK 78
Query: 111 S 111
S
Sbjct: 79 S 79
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 59/88 (67%), Gaps = 2/88 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG FADE + +LKH G+LSMAN+GP+TNGSQFFIT T WLDGKH +FG + GM
Sbjct: 76 IYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSWLDGKHVVFGEVIDGM 134
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTHV 452
+VVK I E + +P ++I K V
Sbjct: 135 NVVKAI-EAEGSGSGKPRSRIEIAKCGV 161
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G I +L+ P T NF LC + Y G FHR+I DFM+Q G GG
Sbjct: 15 LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 111 S 111
S
Sbjct: 75 S 75
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYGK F DE + LKHTG G+LSMANSGP+TNGSQFF+T T WLDGKH +FG + G+
Sbjct: 78 IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 136
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
V+++I + K+ +P V I
Sbjct: 137 DVLRQI-EAQGSKDGKPKQKVII 158
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQAM------GVGGAS 111
G I + L P T NF LC + G FHRII FM Q G GG S
Sbjct: 18 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 77
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYGK F DE + LKHTG G+LSMANSGP+TNGSQFF+T T WLDGKH +FG + G+
Sbjct: 86 IYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 144
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
V+++I + K+ +P V I
Sbjct: 145 DVLRQI-EAQGSKDGKPKQKVII 166
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQAM------GVGGAS 111
G I + L P T NF LC + G FHRII FM Q G GG S
Sbjct: 26 GRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKS 85
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHCNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 4/70 (5%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 135
Query: 425 SVV---KRIG 431
++V KR G
Sbjct: 136 NIVEAMKRFG 145
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTHHNGTGGK 75
Query: 111 S 111
S
Sbjct: 76 S 76
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FH+II FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMCQGGDFTRHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 365 IYGKTFADEI--HEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYS 422
IYG TF DE + +HTG G LSMAN+GP+TNGSQFFI A T WLDGKH +FGR+
Sbjct: 89 IYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFICTAATPWLDGKHVVFGRVID 148
Query: 423 GMSVVKRI 430
G+ VVK++
Sbjct: 149 GLDVVKKV 156
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRN----------YYNGIKFHRIIRDFMIQAM----- 105
G I++ELY P T NF LC +Y FHR+I +FMIQ
Sbjct: 22 GRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNFMIQGGDFTRG 81
Query: 106 -GVGGAS 111
G GG S
Sbjct: 82 NGTGGES 88
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGNFTHHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 135
Query: 425 SVVKRI 430
++V+ +
Sbjct: 136 NIVEAM 141
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 111 S 111
S
Sbjct: 76 S 76
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 97 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 155
Query: 425 SVVKRI 430
++V+ +
Sbjct: 156 NIVEAM 161
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 111 S 111
S
Sbjct: 96 S 96
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 88.2 bits (217), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 86 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 144
Query: 425 SVVKRI 430
++V+ +
Sbjct: 145 NIVEAM 150
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 25 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 84
Query: 111 S 111
S
Sbjct: 85 S 85
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ FADE + ++KHT G+LSMAN+G +TNGSQFFIT PT WLDGKH +FG + G+
Sbjct: 77 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 135
Query: 425 SVVKRI 430
+V+++
Sbjct: 136 DIVRKV 141
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRNYYNGIK---FHRIIRDFMIQAM------GVGGAS 111
G I+ +LY + P T +NF EL + G K FHR+I FM+Q G GG S
Sbjct: 17 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 76
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GIL+MAN+GP+TNGSQFFI A T+WLDGKH +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILTMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ FADE + ++KHT G+LSMAN+G +TNGSQFFIT PT WLDGKH +FG + G+
Sbjct: 78 IYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWLDGKHVVFGEVIEGL 136
Query: 425 SVVKRI 430
+V+++
Sbjct: 137 DIVRKV 142
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRNYYNGIK---FHRIIRDFMIQAM------GVGGAS 111
G I+ +LY + P T +NF EL + G K FHR+I FM+Q G GG S
Sbjct: 18 GRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGKS 77
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE + LKH G G+LSMAN+GP+TNGSQFFI T WLDGKH +FG + GM
Sbjct: 78 IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 425 SVVKRI 430
VVK+I
Sbjct: 137 DVVKKI 142
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G +++EL P T NF LC + Y G FHR+I FM QA G GG
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE + LKH G G+LSMAN+GP+TNGSQFFI T WLDGKH +FG + GM
Sbjct: 79 IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 137
Query: 425 SVVKRI 430
VVK+I
Sbjct: 138 DVVKKI 143
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G +++EL P T NF LC + Y G FHR+I FM QA G GG
Sbjct: 18 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 77
Query: 111 S 111
S
Sbjct: 78 S 78
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE + LKH G G+LSMAN+GP+TNGSQFFI T WLDGKH +FG + GM
Sbjct: 78 IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 136
Query: 425 SVVKRI 430
VVK+I
Sbjct: 137 DVVKKI 142
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G +++EL P T NF LC + Y G FHR+I FM QA G GG
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDGKH +FG + GM
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGKHVVFGAVKEGM 135
Query: 425 SVVKRI 430
++V+ +
Sbjct: 136 NIVEAM 141
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 75
Query: 111 S 111
S
Sbjct: 76 S 76
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE + LKH G G+LSMAN+GP+TNGSQFFI T WLDGKH +FG + GM
Sbjct: 77 IYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVIEGM 135
Query: 425 SVVKRI 430
VVK+I
Sbjct: 136 DVVKKI 141
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G +++EL P T NF LC + Y G FHR+I FM QA G GG
Sbjct: 16 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75
Query: 111 S 111
S
Sbjct: 76 S 76
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IY FADE + +L+H+ G+LSMANSGP TNG QFFIT + WLDGKH +FG+I G+
Sbjct: 90 IYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGL 148
Query: 425 SVVKRIGLVETDKNDRP 441
V+++I V T N++P
Sbjct: 149 LVMRKIENVPTGPNNKP 165
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 54 SLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNY--------YNGIKFHRIIRDFMIQA 104
S+ +G + +EL+ P T NF + C + Y G FHR+I+DFMIQ
Sbjct: 18 SIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQG 76
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDG H +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGXHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + +L+H G G+LSMANSGP+TNGSQFFI WLDGKH +FGR+ G
Sbjct: 85 IYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQ 143
Query: 425 SVVKRI 430
+VVK++
Sbjct: 144 NVVKKM 149
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 9/62 (14%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGG 109
+ G I++EL P T NF LC R Y+ FHR+I FM Q G GG
Sbjct: 23 DAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGG 82
Query: 110 AS 111
S
Sbjct: 83 KS 84
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG++F DE + +KH G+LSMAN+GP+TN SQFFITL P WLDGKH +FG++ GM
Sbjct: 84 IYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGM 142
Query: 425 SVVKRI 430
+VV+ +
Sbjct: 143 NVVREM 148
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 30/69 (43%), Gaps = 17/69 (24%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRR----------NYYNGIKFHRIIRDFMIQAM--- 105
N G II EL+ P TC NF LC +Y N I FHRII FM Q
Sbjct: 16 NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSI-FHRIIPQFMCQGGDIT 74
Query: 106 ---GVGGAS 111
G GG S
Sbjct: 75 NGNGSGGES 83
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDG H +FG++ GM
Sbjct: 78 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGM 136
Query: 425 SVVKRI 430
++V+ +
Sbjct: 137 NIVEAM 142
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYGK F DE + LKHTG G+LS ANSGP+TNGSQFF+T T WLDGKH +FG + G+
Sbjct: 87 IYGKKFDDE-NFILKHTGPGLLSXANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGL 145
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
V+++I + K+ +P V I
Sbjct: 146 DVLRQI-EAQGSKDGKPKQKVII 167
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/66 (60%), Positives = 52/66 (78%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WLDG H +FG++ GM
Sbjct: 82 IYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTKWLDGXHVVFGKVKEGM 140
Query: 425 SVVKRI 430
++V+ +
Sbjct: 141 NIVEAM 146
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII FM Q G GG
Sbjct: 21 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 80
Query: 111 S 111
S
Sbjct: 81 S 81
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + ELKHT GILSMAN G TNGSQFFITL TQWLD KH +FG + GM
Sbjct: 102 IYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGM 160
Query: 425 SVVKRI 430
VV +I
Sbjct: 161 DVVHKI 166
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRR---NYYNGIKFHRIIRDFMIQAM------GVGG 109
++G I+++L P T +NF LC R Y G FHRII FM+Q G GG
Sbjct: 40 SLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGG 99
Query: 110 AS 111
S
Sbjct: 100 RS 101
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/84 (52%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE +KH A +LSMAN G DTNGSQFFIT PT LDG H +FG++ SG
Sbjct: 109 IYGGFFEDESFA-VKHNAAFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQ 167
Query: 425 SVVKRIGLVETDKNDRPVDDVKIL 448
VV+ I +TD +P +V+IL
Sbjct: 168 EVVREIENQKTDAASKPFAEVRIL 191
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRN-----------YYNGIKFHRIIRDFMIQA 104
G ++ EL+ P TC NF LC +Y FHR+++DFM+Q
Sbjct: 41 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQG 95
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG++F DE + +KH G+LSMAN+GP+TN SQF ITL P WLDGKH +FG++ GM
Sbjct: 84 IYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFLITLVPCPWLDGKHVVFGKVIEGM 142
Query: 425 SVVKRI 430
+VV+ +
Sbjct: 143 NVVREM 148
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELC---------RRNYYNGIKFHRIIRDFMIQAM---- 105
N G II EL+ P TC NF LC + +Y FHRII FM Q
Sbjct: 16 NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITN 75
Query: 106 --GVGGAS 111
G GG S
Sbjct: 76 GNGSGGES 83
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + LKHTG GILS AN+GP+TNGSQFFI A T+WLDGKH +FG++ G
Sbjct: 77 IYGEKFEDE-NFILKHTGPGILSXANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGX 135
Query: 425 SVVK 428
++V+
Sbjct: 136 NIVE 139
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G + EL+ P T NF L + Y G FHRII F Q G GG
Sbjct: 16 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXCQGGDFTRHNGTGGK 75
Query: 111 S 111
S
Sbjct: 76 S 76
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE +KH +LSMAN G DTNGSQFFIT PT LDG H +FG++ SG
Sbjct: 92 IYGGFFEDESFA-VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQ 150
Query: 425 SVVKRIGLVETDKNDRPVDDVKIL 448
VV+ I +TD +P +V+IL
Sbjct: 151 EVVREIENQKTDAASKPFAEVRIL 174
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRN-----------YYNGIKFHRIIRDFMIQA 104
G ++ EL+ P TC NF LC +Y FHR+++DFM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQG 78
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 81.6 bits (200), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/88 (48%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE + H +LSMAN+GP+TNGSQFFIT P WLDGKH +FG++ GM
Sbjct: 101 IYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVLEGM 159
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTHV 452
VVK I + +N +P V I + V
Sbjct: 160 EVVKSIEKCGS-QNGKPTKSVCITASGV 186
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 27/67 (40%), Gaps = 16/67 (23%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRN----------YYNGIKFHRIIRDFMIQAM----- 105
G I +EL+ P T NF LC Y G FHRII FMIQ
Sbjct: 34 GRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG 93
Query: 106 -GVGGAS 111
G GG S
Sbjct: 94 DGTGGES 100
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE +KH +LSMAN G DTNGSQFFIT PT LDG H +FG++ SG
Sbjct: 92 IYGGFFEDESFA-VKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQ 150
Query: 425 SVVKRIGLVETDKNDRPVDDVKIL 448
VV+ I +TD +P +V+IL
Sbjct: 151 EVVREIENQKTDAASKPFAEVRIL 174
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 11/55 (20%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRN-----------YYNGIKFHRIIRDFMIQA 104
G ++ EL+ P TC NF LC +Y FHR+++DFM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKDFMVQG 78
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYS-- 422
IYG FADE + KH GILSMAN+GP+TNGSQFFIT A T WLDGKH +FG +
Sbjct: 82 IYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEK 140
Query: 423 GMSVVKRI 430
SVVK I
Sbjct: 141 SYSVVKEI 148
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNYYNGIK---FHRIIRDFMIQAM------GVGGA 110
+G I+ L+ K P T +NF ELC+R G + FHRII +FMIQ G GG
Sbjct: 21 VGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGR 80
Query: 111 S 111
S
Sbjct: 81 S 81
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE + LKH A +LSMAN G TNGSQFFIT P LDG H +FG + SG
Sbjct: 102 IYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGF 160
Query: 425 SVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455
V+++I ++TD RP DV+++ V T
Sbjct: 161 EVIEQIENLKTDAASRPYADVRVIDCGVLAT 191
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 11/56 (19%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA 104
+G I+ +L+ P TC+NF LC ++ Y G FHR++++FMIQ
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQG 88
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE ++ H G+LSMAN+GP+TNGSQFFIT P WLDGKH +FG + G
Sbjct: 76 IYGGKFPDENFKK-HHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGY 134
Query: 425 SVVKRI 430
+VK++
Sbjct: 135 DIVKKV 140
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAM------GVGGA 110
+G ++ +LY P T NF LC + Y G FHR+I DFM+Q G GG
Sbjct: 15 IGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQGGDFTAGNGTGGK 74
Query: 111 S 111
S
Sbjct: 75 S 75
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 52/79 (65%), Gaps = 4/79 (5%)
Query: 365 IYGKTFADE-IHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSG 423
IYG+ F DE H KH G+LSMAN+G +TNGSQFFIT PT LDGKH +FG++ G
Sbjct: 98 IYGEKFEDENFH--YKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKG 155
Query: 424 MSVVKRIGLVETDKNDRPV 442
M V K + VE K ++P
Sbjct: 156 MGVAKILENVEV-KGEKPA 173
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRN-----------YYNGIKFHRIIRDFMIQAM--- 105
+G I++EL+ P T NF LC ++ G FHRII+ FMIQ
Sbjct: 29 VGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS 88
Query: 106 ---GVGGAS 111
G GG S
Sbjct: 89 NQNGTGGES 97
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE +KH ++SMAN GP+TNGSQFFIT P L+ H +FG++ SG
Sbjct: 89 IYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQ 147
Query: 425 SVVKRIGLVETDKNDRPVDDVKIL 448
VV +I ++T+ +RP+ DV IL
Sbjct: 148 EVVTKIEYLKTNSKNRPLADVVIL 171
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 17/68 (25%)
Query: 61 GEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQAM---- 105
G I++ELY AP TC NF LC + +Y G FHR+I++FMIQ
Sbjct: 21 GRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTK 80
Query: 106 --GVGGAS 111
G GG S
Sbjct: 81 GDGTGGES 88
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/80 (51%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 370 FADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMS--VV 427
FADE H EL+ +L+MAN+GP TNGSQFFIT+ T L+ +H IFG + S VV
Sbjct: 106 FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVV 165
Query: 428 KRIGLVETDKNDRPVDDVKI 447
+ I TD NDRP D V I
Sbjct: 166 EAISKTATDGNDRPTDPVVI 185
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 15/61 (24%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRN---------------YYNGIKFHRIIRDFMIQ 103
N G+I + L+ HAP T NF L + +Y+G FHR+I+ FMIQ
Sbjct: 31 NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 90
Query: 104 A 104
Sbjct: 91 G 91
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
I+GK F DE E LKH G++SMAN+GP+TNGSQFFIT LD K+ +FG++ G+
Sbjct: 66 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 125
Query: 425 SVVKRI-GLVETDKNDRPVDDVKI 447
+ + L +K RP++DV I
Sbjct: 126 ETLDELEKLPVNEKTYRPLNDVHI 149
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
S+ H ++G+I +E++ + P TC NF LC NYYNG FHR I+ FM+Q G
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 108 GGAS 111
GG S
Sbjct: 62 GGNS 65
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
I+GK F DE E LKH G++SMAN+GP+TNGSQFFIT LD K+ +FG++ G+
Sbjct: 72 IWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGL 131
Query: 425 SVVKRI-GLVETDKNDRPVDDVKI 447
+ + L +K RP++DV I
Sbjct: 132 ETLDELEKLPVNEKTYRPLNDVHI 155
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
S+ H ++G+I +E++ + P TC NF LC NYYNG FHR I+ FM+Q G
Sbjct: 8 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 67
Query: 108 GGAS 111
GG S
Sbjct: 68 GGNS 71
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSG----PDTNGSQFFITLAPTQWLDGKHAIFGRI 420
IYG+ F DEI+ ELK+ GILSMA+ G P+TNGSQFFIT + L+G++ IFG++
Sbjct: 82 IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFGKL 141
Query: 421 YSGMSVVKRIGLVETDKNDRPVDDVKI 447
G + + +DK+ +P+D++ I
Sbjct: 142 IDGFETLNTLENCPSDKSHKPIDEIII 168
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 40 RRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRD 99
R + F V II N G++ EL+ P C+NF L YY FH+ I+
Sbjct: 11 RENLYFQGVRIIT------NYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKG 64
Query: 100 FMIQ-----AMGVGGAS 111
F+IQ G GG S
Sbjct: 65 FIIQGGDPTGTGKGGES 81
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE + ++KH G+LSMANSGP+TNG QFFIT +WLDGK+ +FGRI
Sbjct: 139 IYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLDGKNVVFGRIIDND 197
Query: 425 SVV 427
S++
Sbjct: 198 SLL 200
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY--------YNGIKFHRIIRDFMIQA 104
+G+ EL+ P T NF + C Y Y FHR+I++FMIQ
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQG 125
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/66 (54%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE + ++KHTG G+LSMAN G +TN SQF ITL + LD KH +FG + GM
Sbjct: 81 IYGDKFEDE-NFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAEHLDFKHVVFGFVKDGM 139
Query: 425 SVVKRI 430
VK+I
Sbjct: 140 DTVKKI 145
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNYYNGIK---FHRIIRDFMIQAM------GVGGA 110
+G I +EL+ P T NF LC G K FHR+I DF+ Q G GG
Sbjct: 20 LGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGGDITKHDGTGGQ 79
Query: 111 S 111
S
Sbjct: 80 S 80
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG F DE H L+ G+++MAN+G NGSQFF TL L+ KH IFG++ +G
Sbjct: 90 IYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKV-TGD 148
Query: 425 SVVK--RIGLVETDKNDRPVDDVKILKTHV 452
+V R+ V+ D ++RP + KI V
Sbjct: 149 TVYNMLRLSEVDIDDDERPHNPHKIKSCEV 178
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 5/56 (8%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
G+I +EL+ K AP CRNF +LC YY+ FHR++ F++Q G GG S
Sbjct: 34 GDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGES 89
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSV 426
G F DE L H G G+LSMAN G +N S+FFIT + L+ KH IFGR+ G+ V
Sbjct: 86 GAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDV 145
Query: 427 VKRIGLVET 435
+++ +ET
Sbjct: 146 LRQWEKLET 154
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 61 GEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQ 115
G + +EL+ AP C +F LC Y++ FHR IR+FMIQ GG + + Q
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQ----GGRAELRQ 66
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 55 LVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
+ FH N G+I+++ + AP T +NF + CR +YN FHR+I FMIQ G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGG 54
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 372 DEIHEELKHTGAGILSMANS-GPDTNGSQFFITLAPTQWLD--GK------HAIFGRIYS 422
+E + LK+T G L+MA + P + +QFFI + +L+ G+ + +F +
Sbjct: 70 NEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVD 128
Query: 423 GMSVVKRIGLVETDKN----DRPVDDVKI 447
GM V +I V T ++ D P +DV I
Sbjct: 129 GMDEVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 55 LVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
+ FH N G+I+++ + AP T +NF + CR +YN FHR+I FMIQ G
Sbjct: 2 VTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGG 54
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 372 DEIHEELKHTGAGILSMANS-GPDTNGSQFFITLAPTQWLD--GK------HAIFGRIYS 422
+E + LK+T G L+MA + P + +QFFI + +L+ G+ + +F +
Sbjct: 70 NEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVD 128
Query: 423 GMSVVKRIGLVETDKN----DRPVDDVKI 447
GM VV +I V T ++ D P +DV I
Sbjct: 129 GMDVVDKIKGVATGRSGMHQDVPKEDVII 157
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 55 LVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVG 108
+V H ++G++ VEL+ + P CRNF +LC YY FHR+++DF++Q G G
Sbjct: 24 VVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGRG 83
Query: 109 GA 110
GA
Sbjct: 84 GA 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 17/92 (18%)
Query: 367 GKTFADEIHEELKHTGAGILSMANSGPD--------------TNGSQFFITLAPTQWLDG 412
GK F E H LK G++ +AN G TNG+QFFITLA L+
Sbjct: 91 GKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNN 150
Query: 413 KHAIFGRIYSGMSV--VKRIGLVETDKNDRPV 442
+ +FG++ +G ++ + + +E K DRP+
Sbjct: 151 AYTLFGKV-TGHTLYNLMKFNDLEVGKEDRPM 181
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
N G I ++L+ AP T NF + + +Y+G FHR+I FMIQ G
Sbjct: 7 NHGTITLKLFADKAPETAANFEQYVKDGHYDGTIFHRVIDGFMIQGGG 54
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
N G I +EL AP T NF ++ +Y+G FHR+I FMIQ G
Sbjct: 11 NHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQGGG 58
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 18/97 (18%)
Query: 371 ADEIHEELKHTGAGILSMANSGPDTNGSQFFITL-----------APTQWLDGKHAIFGR 419
A+E + LK+ I + P + +QFFI + P W +A+FG+
Sbjct: 73 ANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGW---GYAVFGK 129
Query: 420 IYSGMSVVKRIGLVETDK----NDRPVDDVKILKTHV 452
+ G +V +I V+T D P DDV I K V
Sbjct: 130 VVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVV 166
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 55 LVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
L+ + G I +EL + AP + +NF + +YN FHR+I FMIQ G
Sbjct: 8 LLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGG 59
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 372 DEIHEELKHTGAGILSMANSG-PDTNGSQFFITLAPTQWLD-GK----HAIFGRIYSGMS 425
+E L++T G ++MA + D+ SQFFI +A +LD G+ +A+FG++ GM
Sbjct: 75 NEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMD 133
Query: 426 VVKRIGLVET 435
V +I V T
Sbjct: 134 VADKISQVPT 143
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 55 LVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMG 106
L+ + G I +EL + AP + +NF + +YN FHR+I FMIQ G
Sbjct: 8 LLTTSAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGG 59
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 7/70 (10%)
Query: 372 DEIHEELKHTGAGILSMANSG-PDTNGSQFFITLAPTQWLD-GK----HAIFGRIYSGMS 425
+E L++T G ++MA + D+ SQFFI +A +LD G+ +A+FG++ GM
Sbjct: 75 NEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMD 133
Query: 426 VVKRIGLVET 435
V +I V T
Sbjct: 134 VADKISQVPT 143
>pdb|2OTJ|I Chain I, 13-Deoxytedanolide Bound To The Large Subunit Of
Haloarcula Marismortui
Length = 161
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 133 VLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQ 176
V +L +V KHP L++Y++ N E V LGVT +
Sbjct: 92 VADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE 135
>pdb|1S72|I Chain I, Refined Crystal Structure Of The Haloarcula Marismortui
Large Ribosomal Subunit At 2.4 Angstrom Resolution
pdb|1YHQ|I Chain I, Crystal Structure Of Azithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YI2|I Chain I, Crystal Structure Of Erythromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIJ|I Chain I, Crystal Structure Of Telithromycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YIT|I Chain I, Crystal Structure Of Virginiamycin M And S Bound To The
50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJ9|I Chain I, Crystal Structure Of The Mutant 50s Ribosomal Subunit Of
Haloarcula Marismortui Containing A Three Residue
Deletion In L22
pdb|1YJN|I Chain I, Crystal Structure Of Clindamycin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1YJW|I Chain I, Crystal Structure Of Quinupristin Bound To The G2099a
Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ4|I Chain I, The Structure Of The Transition State Analogue "daa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ5|I Chain I, The Structure Of The Transition State Analogue "raa" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ6|I Chain I, The Structure Of C-Hpmn And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ7|I Chain I, The Structure Of The Transition State Analogue "dca" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQ8|I Chain I, The Structure Of Ccda-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQ9|I Chain I, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic
Sparsomycin Bound To The Large Ribosomal Subunit Of
Haloarcula Marismortui
pdb|1VQK|I Chain I, The Structure Of Ccda-Phe-Cap-Bio Bound To The A Site Of
The Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQL|I Chain I, The Structure Of The Transition State Analogue "dcsn"
Bound To The Large Ribosomal Subunit Of Haloarcula
Marismortui
pdb|1VQM|I Chain I, The Structure Of The Transition State Analogue "dan" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQN|I Chain I, The Structure Of Cc-hpmn And Cca-phe-cap-bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|1VQO|I Chain I, The Structure Of Ccpmn Bound To The Large Ribosomal
Subunit Haloarcula Marismortui
pdb|1VQP|I Chain I, The Structure Of The Transition State Analogue "rap" Bound
To The Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|2OTL|I Chain I, Girodazole Bound To The Large Subunit Of Haloarcula
Marismortui
pdb|2QA4|I Chain I, A More Complete Structure Of The The L7L12 STALK OF THE
Haloarcula Marismortui 50s Large Ribosomal Subunit
pdb|3CC2|I Chain I, The Refined Crystal Structure Of The Haloarcula
Marismortui Large Ribosomal Subunit At 2.4 Angstrom
Resolution With Rrna Sequence For The 23s Rrna And
Genome-Derived Sequences For R-Proteins
pdb|3CC4|I Chain I, Co-Crystal Structure Of Anisomycin Bound To The 50s
Ribosomal Subunit
pdb|3CC7|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2487u
pdb|3CCE|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535a
pdb|3CCJ|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation C2534u
pdb|3CCL|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation U2535c. Density For Anisomycin Is
Visible But Not Included In Model.
pdb|3CCM|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2611u
pdb|3CCQ|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488u
pdb|3CCR|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation A2488c. Density For Anisomycin Is
Visible But Not Included In The Model.
pdb|3CCS|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482a
pdb|3CCU|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2482c
pdb|3CCV|I Chain I, Structure Of Anisomycin Resistant 50s Ribosomal Subunit:
23s Rrna Mutation G2616a
pdb|3CD6|I Chain I, Co-cystal Of Large Ribosomal Subunit Mutant G2616a With
Cc-puromycin
pdb|3CMA|I Chain I, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The
Large Ribosomal Subunit Of Haloarcula Marismortui
pdb|3CME|I Chain I, The Structure Of Ca And Cca-Phe-Cap-Bio Bound To The Large
Ribosomal Subunit Of Haloarcula Marismortui
pdb|2QEX|I Chain I, Negamycin Binds To The Wall Of The Nascent Chain Exit
Tunnel Of The 50s Ribosomal Subunit
pdb|3I55|I Chain I, Co-Crystal Structure Of Mycalamide A Bound To The Large
Ribosomal Subunit
pdb|3I56|I Chain I, Co-Crystal Structure Of Triacetyloleandomcyin Bound To The
Large Ribosomal Subunit
Length = 162
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 133 VLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQ 176
V +L +V KHP L++Y++ N E V LGVT +
Sbjct: 93 VADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE 136
>pdb|3G4S|I Chain I, Co-Crystal Structure Of Tiamulin Bound To The Large
Ribosomal Subunit
pdb|3G6E|I Chain I, Co-Crystal Structure Of Homoharringtonine Bound To The
Large Ribosomal Subunit
pdb|3G71|I Chain I, Co-crystal Structure Of Bruceantin Bound To The Large
Ribosomal Subunit
Length = 70
Score = 29.3 bits (64), Expect = 4.3, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 133 VLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGVTFQ 176
V +L +V KHP L++Y++ N E V LGVT +
Sbjct: 27 VADLSVDQVKQIAEQKHPDLLSYDLTNAAKEVVGTCTSLGVTIE 70
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 236 ETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNI----MAANKITSLKNRRD 283
ET + +S++H FLI + I HN +N+ + +N I+S+K +D
Sbjct: 95 ETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKD 146
>pdb|1EXZ|A Chain A, Structure Of Stem Cell Factor
pdb|1EXZ|B Chain B, Structure Of Stem Cell Factor
pdb|1EXZ|C Chain C, Structure Of Stem Cell Factor
pdb|1EXZ|D Chain D, Structure Of Stem Cell Factor
pdb|2E9W|C Chain C, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|D Chain D, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 141
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 22/109 (20%)
Query: 82 LCRRNYYNGIK-----FHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNL 136
+CR N +K + +D+MI V G DV+ + HCW +E ++ L+
Sbjct: 3 ICRNRVTNNVKDVTKLVANLPKDYMITLKYVPG-------MDVLPS-HCWISEMVVQLSD 54
Query: 137 EKCKVMSFYTNKHPILINYNINN---------VQLERVNNIKDLGVTFQ 176
++ ++N L NY+I + V+ + N+ KDL +F+
Sbjct: 55 SLTDLLDKFSNISEGLSNYSIIDKLVNIVDDLVECVKENSSKDLKKSFK 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,849,263
Number of Sequences: 62578
Number of extensions: 503816
Number of successful extensions: 1274
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 153
length of query: 456
length of database: 14,973,337
effective HSP length: 102
effective length of query: 354
effective length of database: 8,590,381
effective search space: 3040994874
effective search space used: 3040994874
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)