Query psy1031
Match_columns 456
No_of_seqs 480 out of 2452
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 23:14:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1031.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1031hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546|consensus 100.0 6.2E-42 1.3E-46 329.2 12.5 118 332-454 61-179 (372)
2 KOG0881|consensus 100.0 1.6E-41 3.4E-46 277.8 8.8 103 351-453 61-163 (164)
3 KOG0880|consensus 100.0 6.5E-39 1.4E-43 283.0 14.2 107 345-454 96-203 (217)
4 COG0652 PpiB Peptidyl-prolyl c 100.0 3.3E-36 7.2E-41 264.8 15.6 91 359-453 60-157 (158)
5 cd01923 cyclophilin_RING cyclo 100.0 6.8E-36 1.5E-40 267.9 17.5 104 352-455 52-155 (159)
6 cd01928 Cyclophilin_PPIL3_like 100.0 7.8E-36 1.7E-40 265.7 16.7 101 352-452 53-153 (153)
7 KOG0883|consensus 100.0 2.3E-36 5E-41 289.9 12.4 108 345-454 325-432 (518)
8 KOG0879|consensus 100.0 3.4E-36 7.3E-41 249.4 11.0 114 334-452 62-176 (177)
9 KOG0884|consensus 100.0 7.4E-36 1.6E-40 243.1 12.3 103 351-453 52-155 (161)
10 cd01927 cyclophilin_WD40 cyclo 100.0 1.8E-35 3.9E-40 262.0 15.5 92 359-450 57-148 (148)
11 KOG0882|consensus 100.0 2.1E-35 4.5E-40 288.7 12.1 102 351-452 456-557 (558)
12 cd01921 cyclophilin_RRM cyclop 100.0 1.5E-34 3.3E-39 261.1 16.3 86 370-455 75-161 (166)
13 cd01922 cyclophilin_SpCYP2_lik 100.0 1.8E-34 3.9E-39 254.9 14.7 87 362-449 60-146 (146)
14 cd01925 cyclophilin_CeCYP16-li 100.0 2.3E-33 5E-38 254.3 17.3 105 351-455 57-162 (171)
15 PTZ00221 cyclophilin; Provisio 100.0 8.3E-33 1.8E-37 260.9 17.0 117 332-455 105-221 (249)
16 PLN03149 peptidyl-prolyl isome 100.0 9.9E-33 2.1E-37 252.9 16.6 114 335-453 71-186 (186)
17 PTZ00060 cyclophilin; Provisio 100.0 9.5E-32 2.1E-36 246.1 17.0 102 351-454 81-183 (183)
18 cd01926 cyclophilin_ABH_like c 100.0 8.1E-32 1.8E-36 243.0 16.1 90 360-451 75-164 (164)
19 PRK10903 peptidyl-prolyl cis-t 100.0 2.7E-31 5.9E-36 244.0 17.0 73 381-453 107-189 (190)
20 PRK10791 peptidyl-prolyl cis-t 100.0 8.8E-31 1.9E-35 235.4 16.6 78 376-454 74-164 (164)
21 KOG0111|consensus 100.0 1.7E-31 3.7E-36 239.0 10.1 101 351-453 196-297 (298)
22 KOG0885|consensus 100.0 9.4E-31 2E-35 250.7 11.6 104 351-454 64-168 (439)
23 KOG0415|consensus 100.0 2.8E-30 6.1E-35 245.4 13.0 105 351-455 52-164 (479)
24 cd01920 cyclophilin_EcCYP_like 100.0 8.8E-30 1.9E-34 227.4 14.8 70 381-450 76-155 (155)
25 cd00317 cyclophilin cyclophili 100.0 1.3E-27 2.9E-32 211.8 14.8 81 369-449 66-146 (146)
26 cd01924 cyclophilin_TLP40_like 99.9 2.3E-27 4.9E-32 215.6 14.5 67 377-454 100-175 (176)
27 PF00160 Pro_isomerase: Cyclop 99.9 2.9E-26 6.2E-31 205.3 15.4 80 370-452 73-155 (155)
28 KOG0865|consensus 99.9 2E-24 4.3E-29 191.7 6.5 118 332-453 48-167 (167)
29 KOG0865|consensus 98.4 3E-07 6.5E-12 82.2 5.8 85 28-129 2-98 (167)
30 cd01650 RT_nLTR_like RT_nLTR: 97.9 3.3E-06 7.1E-11 79.4 1.6 81 89-175 140-220 (220)
31 cd00304 RT_like RT_like: Rever 96.2 0.0045 9.7E-08 50.2 3.3 61 88-175 38-98 (98)
32 PF00078 RVT_1: Reverse transc 96.1 0.0015 3.2E-08 60.6 0.0 61 89-175 154-214 (214)
33 cd01648 TERT TERT: Telomerase 95.9 0.0062 1.4E-07 51.8 3.2 67 90-176 52-119 (119)
34 PF09004 DUF1891: Domain of un 95.9 0.0019 4E-08 43.9 -0.1 42 181-222 1-42 (42)
35 cd03487 RT_Bac_retron_II RT_Ba 95.6 0.013 2.9E-07 55.0 4.0 66 89-178 133-198 (214)
36 cd01651 RT_G2_intron RT_G2_int 95.5 0.0061 1.3E-07 57.2 1.7 62 89-175 165-226 (226)
37 cd01646 RT_Bac_retron_I RT_Bac 95.4 0.012 2.6E-07 52.5 3.1 68 88-178 80-147 (158)
38 cd03714 RT_DIRS1 RT_DIRS1: Rev 93.6 0.12 2.6E-06 43.6 4.8 84 52-141 18-106 (119)
39 KOG0882|consensus 92.6 0.26 5.7E-06 50.3 6.2 123 327-454 134-263 (558)
40 cd01709 RT_like_1 RT_like_1: A 92.0 0.77 1.7E-05 46.0 8.6 54 87-147 109-162 (346)
41 cd01645 RT_Rtv RT_Rtv: Reverse 87.8 1.4 3.1E-05 41.2 6.5 75 60-140 121-201 (213)
42 cd03715 RT_ZFREV_like RT_ZFREV 77.8 3.7 8.1E-05 38.2 4.9 84 52-141 109-198 (210)
43 KOG0546|consensus 77.7 1.4 3E-05 44.1 2.0 134 28-178 7-163 (372)
44 TIGR03268 methan_mark_3 putati 66.8 7.3 0.00016 40.8 4.3 60 367-432 244-303 (503)
45 PRK00969 hypothetical protein; 64.6 8.1 0.00017 40.6 4.1 60 367-432 247-306 (508)
46 KOG0884|consensus 61.5 11 0.00024 31.7 3.6 121 52-172 1-132 (161)
47 KOG0881|consensus 45.6 9.5 0.00021 32.4 0.8 124 50-173 8-142 (164)
48 cd01647 RT_LTR RT_LTR: Reverse 37.0 45 0.00098 28.8 3.9 81 55-141 83-165 (177)
49 COG4070 Predicted peptidyl-pro 29.9 34 0.00073 34.9 2.0 62 361-428 240-301 (512)
50 KOG0111|consensus 28.1 44 0.00095 31.3 2.2 123 26-165 133-269 (298)
51 TIGR03268 methan_mark_3 putati 27.1 1.5E+02 0.0032 31.5 6.1 54 381-434 110-166 (503)
52 PRK00969 hypothetical protein; 25.9 1.6E+02 0.0036 31.1 6.2 53 381-434 114-169 (508)
53 PF04126 Cyclophil_like: Cyclo 23.3 93 0.002 26.3 3.3 46 382-432 61-113 (120)
54 PF12903 DUF3830: Protein of u 20.1 77 0.0017 27.9 2.2 21 62-82 9-29 (147)
No 1
>KOG0546|consensus
Probab=100.00 E-value=6.2e-42 Score=329.16 Aligned_cols=118 Identities=49% Similarity=0.739 Sum_probs=113.4
Q ss_pred cCCccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCC
Q psy1031 332 GEFSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410 (456)
Q Consensus 332 ~~~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~l 410 (456)
|+.+.|||+++ |||+ ||||++ ++|+||+||||.+|+||+ +.++|+++++|||||.||||||||||||..++|||
T Consensus 61 YKG~~FHRViK--~FMi--QgGDfs~gnGtGGeSIYG~~FdDEn-F~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHL 135 (372)
T KOG0546|consen 61 YKGSRFHRVIK--NFMI--QGGDFSEGNGTGGESIYGEKFDDEN-FELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHL 135 (372)
T ss_pred ecCchhheeee--ccee--eccccccCCCCCccccccccccccc-ceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCc
Confidence 55778999988 9999 999998 999999999999999997 89999999999999999999999999999999999
Q ss_pred CCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN 454 (456)
Q Consensus 411 d~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~ 454 (456)
||+|+|||+|+.|++||+.|+++.++.+.+|..+|+|.+|+++.
T Consensus 136 dGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~ 179 (372)
T KOG0546|consen 136 DGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELV 179 (372)
T ss_pred CCceeEEeeEeechhHHHHHhccccccCCCCccceEeccccccc
Confidence 99999999999999999999999999999999999999999875
No 2
>KOG0881|consensus
Probab=100.00 E-value=1.6e-41 Score=277.79 Aligned_cols=103 Identities=76% Similarity=1.290 Sum_probs=100.5
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031 351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI 430 (456)
Q Consensus 351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i 430 (456)
|||||+|+|.||.+|||..|+||.+..|+|.++|+|||||.+||+|||||||||.+.+||||++++||||+.||+|+.++
T Consensus 61 QGGDPTGTGRGGaSIYG~kF~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~ 140 (164)
T KOG0881|consen 61 QGGDPTGTGRGGASIYGDKFEDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRM 140 (164)
T ss_pred ecCCCCCCCCCccccccchhhhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcccEEEEEEEe
Q psy1031 431 GLVETDKNDRPVDDVKILKTHVR 453 (456)
Q Consensus 431 ~~~~~~~~~~P~~~i~I~~~~v~ 453 (456)
..++++..++|+.+++|.++.+.
T Consensus 141 G~v~Td~~DRPi~~~kIika~~~ 163 (164)
T KOG0881|consen 141 GMVETDNSDRPIDEVKIIKAYPS 163 (164)
T ss_pred cceecCCCCCCccceeeEeeecC
Confidence 99999999999999999998764
No 3
>KOG0880|consensus
Probab=100.00 E-value=6.5e-39 Score=283.03 Aligned_cols=107 Identities=55% Similarity=0.911 Sum_probs=100.4
Q ss_pred ceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcC
Q psy1031 345 NHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSG 423 (456)
Q Consensus 345 N~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G 423 (456)
|+++ ||||.+ ++|+||-+|||.+|+||+ +.|+|+++|.|||||.|||+||||||||+.+.+||||+++|||||++|
T Consensus 96 nfmI--QGGd~t~g~gtGg~SIyG~~F~DEN-f~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGkhVVFGqVl~G 172 (217)
T KOG0880|consen 96 NFMI--QGGDFTKGDGTGGKSIYGEKFPDEN-FKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGKHVVFGQVLEG 172 (217)
T ss_pred Ccee--ecCccccCCCCCCeEeecCCCCCcc-ceeecCCCceEeeeccCCCCCCceEEEEecCCccccCceeEEeeehhh
Confidence 5555 777777 779999999999999997 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031 424 MSVVKRIGLVETDKNDRPVDDVKILKTHVRN 454 (456)
Q Consensus 424 ~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~ 454 (456)
||+|.+|+.+++|++++|+++++|.+|+-++
T Consensus 173 mdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~ 203 (217)
T KOG0880|consen 173 MDVVRKIENVKTDERDKPLEDVVIANCGELP 203 (217)
T ss_pred HHHHHHHHhcccCCCCCccccEEEeecCccc
Confidence 9999999999999999999999999998654
No 4
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-36 Score=264.78 Aligned_cols=91 Identities=47% Similarity=0.793 Sum_probs=77.0
Q ss_pred CCCCcccccccccccccccccccC--cceEEeeccC-CCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCC
Q psy1031 359 GRGGSSIYGKTFADEIHEELKHTG--AGILSMANSG-PDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVET 435 (456)
Q Consensus 359 g~g~~~~~g~~~~~e~~~~~~h~~--~G~l~ma~~~-~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~ 435 (456)
|.||+ ++.|++|++ ...|.+ +|+|||||++ ||+|||||||++.+.+|||++|+|||+|++|||+|++|+++++
T Consensus 60 g~gg~---~~~f~~E~~-~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~ 135 (158)
T COG0652 60 GTGGP---GPPFKDENF-ALNGDRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVVDKIKNGDT 135 (158)
T ss_pred CCCCC---CCCCccccc-ccccccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCcEEEEEehhHHHHHHHHcCCc
Confidence 44555 367788863 344444 9999999999 9999999999999999999999999999999999999999888
Q ss_pred CCC----CCCCcccEEEEEEEe
Q psy1031 436 DKN----DRPVDDVKILKTHVR 453 (456)
Q Consensus 436 ~~~----~~P~~~i~I~~~~v~ 453 (456)
... ..|..+++|.++.+.
T Consensus 136 ~~~~~~~~~~~~~~~i~~~~~~ 157 (158)
T COG0652 136 DDSGYVQDVPADPVKILSVKIV 157 (158)
T ss_pred cCCCcccCCCCCCeEEeeeeee
Confidence 754 467789999998875
No 5
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=6.8e-36 Score=267.89 Aligned_cols=104 Identities=54% Similarity=0.924 Sum_probs=90.5
Q ss_pred CCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhh
Q psy1031 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIG 431 (456)
Q Consensus 352 ~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~ 431 (456)
|||++++|.|+.++||..+++|....++|..+|+||||++++++++|||||+++++++||++|+|||||++|||+|++|+
T Consensus 52 ~Gd~~~~g~~~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~vFG~V~~G~~vl~~I~ 131 (159)
T cd01923 52 GGDPTGTGRGGESIWGKPFKDEFKPNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAME 131 (159)
T ss_pred ecccCCCCCCCccccCCccCcccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCccEEEEEEcCHHHHHHHH
Confidence 34444444455556666677776667789889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccEEEEEEEeec
Q psy1031 432 LVETDKNDRPVDDVKILKTHVRNT 455 (456)
Q Consensus 432 ~~~~~~~~~P~~~i~I~~~~v~~~ 455 (456)
+++++++++|+.+|+|.+|+|+.|
T Consensus 132 ~~~~~~~~~P~~~i~I~~~~i~~d 155 (159)
T cd01923 132 NVPDPGTDRPKEEIKIEDTSVFVD 155 (159)
T ss_pred cCCCCCCCCCCCCeEEEEeEEEeC
Confidence 999988899999999999999875
No 6
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=7.8e-36 Score=265.66 Aligned_cols=101 Identities=49% Similarity=0.902 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhh
Q psy1031 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIG 431 (456)
Q Consensus 352 ~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~ 431 (456)
|||+.++|.|+.++||..+++|....+.|..+|+||||+++|++++|||||+++++++||++|+|||||++|||+|++|+
T Consensus 53 ~Gd~~~~g~g~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~tvFG~V~~G~dvl~~I~ 132 (153)
T cd01928 53 TGDPTGTGKGGESIWGKKFEDEFRETLKHDSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLE 132 (153)
T ss_pred ccccCCCCCCCCccCCCccccccccCCCcCCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCceEEEEEEeCHHHHHHHH
Confidence 33433344444455555677776556778889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCcccEEEEEEE
Q psy1031 432 LVETDKNDRPVDDVKILKTHV 452 (456)
Q Consensus 432 ~~~~~~~~~P~~~i~I~~~~v 452 (456)
+++++++++|..+|+|.+|.+
T Consensus 133 ~~~~~~~~~P~~~i~I~~~~~ 153 (153)
T cd01928 133 KLPVDKKYRPLEEIRIKDVTI 153 (153)
T ss_pred cCCCCCCCCCcCCeEEEEeEC
Confidence 999998999999999999864
No 7
>KOG0883|consensus
Probab=100.00 E-value=2.3e-36 Score=289.91 Aligned_cols=108 Identities=55% Similarity=0.917 Sum_probs=104.1
Q ss_pred ceeecCcCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCH
Q psy1031 345 NHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424 (456)
Q Consensus 345 N~i~~~q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~ 424 (456)
||++ |||||+|+|.||+||||.+|.||+.+.+.|+++|+|||||+|||+|||||||+..++.+||++||+||+||-|+
T Consensus 325 nFmi--QGGDPTGTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~KHTIFGrvVGGl 402 (518)
T KOG0883|consen 325 NFMI--QGGDPTGTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNKHTIFGRVVGGL 402 (518)
T ss_pred HHee--eCCCCCCCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhccccceeeeeeeccH
Confidence 4455 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031 425 SVVKRIGLVETDKNDRPVDDVKILKTHVRN 454 (456)
Q Consensus 425 ~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~ 454 (456)
|+|++|+++++++.++|+++|+|.++.|.=
T Consensus 403 dtL~amEnve~d~~DrP~e~I~i~~~~VFV 432 (518)
T KOG0883|consen 403 DTLTAMENVETDEKDRPKEEIKIEDAIVFV 432 (518)
T ss_pred HHHHHHhcCCCCCCCCcccceEEeeeEEee
Confidence 999999999999999999999999999853
No 8
>KOG0879|consensus
Probab=100.00 E-value=3.4e-36 Score=249.35 Aligned_cols=114 Identities=48% Similarity=0.767 Sum_probs=102.9
Q ss_pred CccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCC
Q psy1031 334 FSPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDG 412 (456)
Q Consensus 334 ~s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~ 412 (456)
++.|||+++ ++++ ||||.- ++|+|-.+|||.+|+||+ +.++|.++|+|||||+++++||.|||||..++.+||+
T Consensus 62 ~~tFHRvIk--dFMi--QgGDFv~gDGtG~~sIy~~~F~DEN-FtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~ 136 (177)
T KOG0879|consen 62 NSTFHRVIK--DFMI--QGGDFVNGDGTGVASIYGSTFPDEN-FTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDG 136 (177)
T ss_pred ccchHHHhh--hhee--ccCceecCCCceEEEEcCCCCCCcc-eeeecCCCceeeccccCCCCCCceEEEEecccccccC
Confidence 344555544 5666 777764 788888999999999997 8999999999999999999999999999999999999
Q ss_pred CccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEE
Q psy1031 413 KHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452 (456)
Q Consensus 413 ~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v 452 (456)
+++|||+|++|+.++++|+.+++..+++|+-+|.|..|+-
T Consensus 137 KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGe 176 (177)
T KOG0879|consen 137 KHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGE 176 (177)
T ss_pred ceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeeccc
Confidence 9999999999999999999999999999999999999974
No 9
>KOG0884|consensus
Probab=100.00 E-value=7.4e-36 Score=243.09 Aligned_cols=103 Identities=46% Similarity=0.792 Sum_probs=97.8
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031 351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI 430 (456)
Q Consensus 351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i 430 (456)
|+||++.+|.||.+|||.+|+||+..-++|+.+|+++|||.|||+|+|||||+.+.+|+||-+|+|||+|++|+|.|+.|
T Consensus 52 ~~~~~~~tgrgg~siwg~~fede~~~~lkh~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldel 131 (161)
T KOG0884|consen 52 QTGDPTHTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL 131 (161)
T ss_pred EeCCCCCCCCCCccccCCcchHHHHHHHhhccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHH
Confidence 67777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCC-CCCCcccEEEEEEEe
Q psy1031 431 GLVETDKN-DRPVDDVKILKTHVR 453 (456)
Q Consensus 431 ~~~~~~~~-~~P~~~i~I~~~~v~ 453 (456)
+..++++. .+|+.++.|.++.+-
T Consensus 132 e~l~v~~ktyrpl~~~~ik~itih 155 (161)
T KOG0884|consen 132 EKLPVNEKTYRPLNDVHIKDITIH 155 (161)
T ss_pred hhcccCccccccchheeeeeeEEe
Confidence 99999886 799999999999874
No 10
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=1.8e-35 Score=262.00 Aligned_cols=92 Identities=60% Similarity=0.992 Sum_probs=80.8
Q ss_pred CCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCC
Q psy1031 359 GRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKN 438 (456)
Q Consensus 359 g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~ 438 (456)
|.|+.++|+..+++|..+.+.|..+|+||||+++|++++|||||+++++|+||++|+|||||++|||+|++|++++++++
T Consensus 57 g~g~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~ 136 (148)
T cd01927 57 GTGGESIWGKEFEDEFSPSLKHDRPYTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKN 136 (148)
T ss_pred CCCCCcccCCccccccccccCcCCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCceEEEEEEcCHHHHHHHHcCCCCCC
Confidence 33444455556667765578898889999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCcccEEEEE
Q psy1031 439 DRPVDDVKILKT 450 (456)
Q Consensus 439 ~~P~~~i~I~~~ 450 (456)
++|.++|+|.++
T Consensus 137 ~~P~~~i~I~~~ 148 (148)
T cd01927 137 DRPYEDIKIINI 148 (148)
T ss_pred CCCcCCeEEEeC
Confidence 999999999864
No 11
>KOG0882|consensus
Probab=100.00 E-value=2.1e-35 Score=288.73 Aligned_cols=102 Identities=60% Similarity=1.023 Sum_probs=99.8
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHh
Q psy1031 351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRI 430 (456)
Q Consensus 351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i 430 (456)
|+|||.|+|+||+||||..|+||+++.|+|+++-+|||||+|||+||||||||..+.|||||++||||||+.|||||.+|
T Consensus 456 qtgdp~g~gtggesiwg~dfedefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~khtvfgrv~~gm~vvqri 535 (558)
T KOG0882|consen 456 QTGDPLGDGTGGESIWGKDFEDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGKHTVFGRVTAGMDVVQRI 535 (558)
T ss_pred ecCCCCCCCCCCcccccccchhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCcceeEEEEecchhHHhHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCCcccEEEEEEE
Q psy1031 431 GLVETDKNDRPVDDVKILKTHV 452 (456)
Q Consensus 431 ~~~~~~~~~~P~~~i~I~~~~v 452 (456)
+++.++..++|.++|.|.++.|
T Consensus 536 ~~v~t~k~drp~e~v~iinisv 557 (558)
T KOG0882|consen 536 EQVKTDKYDRPYEDVKIINISV 557 (558)
T ss_pred hhcccCcCCCCCCceeEEEEec
Confidence 9999999999999999999876
No 12
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=100.00 E-value=1.5e-34 Score=261.11 Aligned_cols=86 Identities=42% Similarity=0.765 Sum_probs=79.0
Q ss_pred ccccccccccccCcceEEeeccCCCCCcceEEEEeCC-CCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEE
Q psy1031 370 FADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAP-TQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKIL 448 (456)
Q Consensus 370 ~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~-~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~ 448 (456)
+++|..+.++|..+|+||||++++++++|||||++++ .++||++|+|||||++|||+|++|++++++++++|.++|+|.
T Consensus 75 ~~~e~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~ 154 (166)
T cd01921 75 FEPEILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIK 154 (166)
T ss_pred cCcccCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEE
Confidence 4455555778888999999999999999999999986 799999999999999999999999999999899999999999
Q ss_pred EEEEeec
Q psy1031 449 KTHVRNT 455 (456)
Q Consensus 449 ~~~v~~~ 455 (456)
+|+|+++
T Consensus 155 ~~~i~~~ 161 (166)
T cd01921 155 HTHILDD 161 (166)
T ss_pred EEEEECC
Confidence 9999875
No 13
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=1.8e-34 Score=254.90 Aligned_cols=87 Identities=74% Similarity=1.212 Sum_probs=76.8
Q ss_pred CcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCC
Q psy1031 362 GSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRP 441 (456)
Q Consensus 362 ~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P 441 (456)
+.++||..+++|..+.++|.++|+||||+++|++++|||||+++++|+||++|+|||||++|||+|++|++++++ +++|
T Consensus 60 ~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~tvFG~V~~G~dvl~~I~~~~~~-~~~P 138 (146)
T cd01922 60 GASIYGKKFEDEIHPELKHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIENMVEVQTQ-TDRP 138 (146)
T ss_pred cccccCCCcccccccCcCCCCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCCEEEEEEcCHHHHHHHHhCCCC-CCCc
Confidence 334444556667656788888999999999999999999999999999999999999999999999999999998 8899
Q ss_pred CcccEEEE
Q psy1031 442 VDDVKILK 449 (456)
Q Consensus 442 ~~~i~I~~ 449 (456)
.++|+|.+
T Consensus 139 ~~~I~I~~ 146 (146)
T cd01922 139 IDEVKILK 146 (146)
T ss_pred CCCeEEeC
Confidence 99999963
No 14
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2.3e-33 Score=254.32 Aligned_cols=105 Identities=47% Similarity=0.807 Sum_probs=89.9
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEE-cCHHHHHH
Q psy1031 351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIY-SGMSVVKR 429 (456)
Q Consensus 351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~-~G~~~l~~ 429 (456)
||||+.++|+|+.++||..+++|.+..+.|.++|+||||++++++++|||||++++.++||++|+|||+|+ +|+++|++
T Consensus 57 QgGd~~~~g~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~ 136 (171)
T cd01925 57 QGGDPTGTGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKHTLFGKVTGDTIYNLLK 136 (171)
T ss_pred EccccCCCCccCcccCCCccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCceEEEEEEECcHHHHHH
Confidence 34444444555556666677778766778888999999999999999999999999999999999999999 46888999
Q ss_pred hhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031 430 IGLVETDKNDRPVDDVKILKTHVRNT 455 (456)
Q Consensus 430 i~~~~~~~~~~P~~~i~I~~~~v~~~ 455 (456)
|++++++++++|..+|+|.+|+|+++
T Consensus 137 i~~~~~~~~~~P~~~i~I~~~~i~~~ 162 (171)
T cd01925 137 LAEVETDKDERPVYPPKITSVEVLEN 162 (171)
T ss_pred HhcCCcCCCCCcCCCeEEEEEEEEcC
Confidence 99999998999999999999999875
No 15
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=8.3e-33 Score=260.94 Aligned_cols=117 Identities=29% Similarity=0.440 Sum_probs=102.3
Q ss_pred cCCccceeeeeccceeecCcCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCC
Q psy1031 332 GEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411 (456)
Q Consensus 332 ~~~s~~~rv~~iwN~i~~~q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld 411 (456)
|+++.|||+.+- ++++ |+||+.+. +.++||..|+||. +.++|+++|+||||+.+||+||||||||++++++||
T Consensus 105 Y~gt~FhRVi~~-~f~i--qgGD~~~~---g~s~~G~~f~dE~-~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LD 177 (249)
T PTZ00221 105 YLYTPVHHVDRN-NNII--VLGELDSF---NVSSTGTPIADEG-YRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLD 177 (249)
T ss_pred cCCCEEEEEeCC-CCEE--EeCCCCCC---CccCCCCcccCcc-ccccCCCCCEEEeCcCCCCCccceEEEECCCCCccC
Confidence 456667777652 3565 88987643 3467788999996 578899999999999999999999999999999999
Q ss_pred CCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455 (456)
Q Consensus 412 ~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~~ 455 (456)
++|+|||+|++|||+|++|++++++++++|.++|+|.+|+++++
T Consensus 178 gk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~ 221 (249)
T PTZ00221 178 FKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTG 221 (249)
T ss_pred CCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecC
Confidence 99999999999999999999999988899999999999999874
No 16
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=9.9e-33 Score=252.87 Aligned_cols=114 Identities=48% Similarity=0.756 Sum_probs=94.7
Q ss_pred ccceeeeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCC
Q psy1031 335 SPIQRMEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGK 413 (456)
Q Consensus 335 s~~~rv~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~ 413 (456)
+.|||+.+ ++++ ||||+. ++|+|+.++||..+++|. ..+.|..+|+||||++++++++|||||+++++|+||++
T Consensus 71 ~~fhrVi~--~f~i--qgGd~~~~~g~g~~~~~g~~f~~e~-~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~ 145 (186)
T PLN03149 71 CQFHRVIK--DFMI--QGGDFLKGDGTGCVSIYGSKFEDEN-FIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNK 145 (186)
T ss_pred cEEEEEcC--CcEE--EcCCcccCCCCCcccccCCccCCcc-cccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCC
Confidence 33444433 4444 566643 556666667777777775 45778889999999999999999999999999999999
Q ss_pred ccEEEEEE-cCHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031 414 HAIFGRIY-SGMSVVKRIGLVETDKNDRPVDDVKILKTHVR 453 (456)
Q Consensus 414 ~~vfG~V~-~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~ 453 (456)
|+|||+|+ +|||+|++|++++++++++|..+|+|.+|+++
T Consensus 146 ~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~ 186 (186)
T PLN03149 146 HVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186 (186)
T ss_pred ceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence 99999999 79999999999999989999999999999974
No 17
>PTZ00060 cyclophilin; Provisional
Probab=99.98 E-value=9.5e-32 Score=246.09 Aligned_cols=102 Identities=49% Similarity=0.833 Sum_probs=86.3
Q ss_pred cCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHH
Q psy1031 351 AGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKR 429 (456)
Q Consensus 351 q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~ 429 (456)
||||+. ++|+++.++||..+++|. ..+.|..+|+||||++++++++|||||+++++++||++|+|||||++|||+|++
T Consensus 81 qgGd~~~~~g~~g~~~~g~~~~~e~-~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~ 159 (183)
T PTZ00060 81 QGGDITNHNGTGGESIYGRKFTDEN-FKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRA 159 (183)
T ss_pred EeCCccCCCCCCCCcccccccCCcc-ccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCccEEEEEEccHHHHHH
Confidence 444443 344555555666667774 567888899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCcccEEEEEEEee
Q psy1031 430 IGLVETDKNDRPVDDVKILKTHVRN 454 (456)
Q Consensus 430 i~~~~~~~~~~P~~~i~I~~~~v~~ 454 (456)
|+++++. +++|.++|+|.+|+++.
T Consensus 160 I~~~~~~-~~~P~~~v~I~~cg~~~ 183 (183)
T PTZ00060 160 MEKEGTQ-SGYPKKPVVVTDCGELQ 183 (183)
T ss_pred HHccCCC-CCCCcCCeEEEEeEEcC
Confidence 9998884 68999999999999863
No 18
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=99.98 E-value=8.1e-32 Score=242.96 Aligned_cols=90 Identities=57% Similarity=0.946 Sum_probs=79.2
Q ss_pred CCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCC
Q psy1031 360 RGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKND 439 (456)
Q Consensus 360 ~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~ 439 (456)
+++.++||..+++|. ..+.|..+|+||||+.+|++++|||||++++.++||++|+|||||++|||+|++|++++++ ++
T Consensus 75 ~~~~~~~g~~~~~e~-~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~-~~ 152 (164)
T cd01926 75 TGGKSIYGEKFPDEN-FKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSG-NG 152 (164)
T ss_pred CCCCcccCCccCCCC-ccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCC-CC
Confidence 333444555566664 5678888999999999999999999999999999999999999999999999999999998 89
Q ss_pred CCCcccEEEEEE
Q psy1031 440 RPVDDVKILKTH 451 (456)
Q Consensus 440 ~P~~~i~I~~~~ 451 (456)
+|+.+|+|.+|+
T Consensus 153 ~P~~~i~I~~cG 164 (164)
T cd01926 153 KPKKKVVIADCG 164 (164)
T ss_pred CCcCCeEEEECC
Confidence 999999999985
No 19
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.97 E-value=2.7e-31 Score=243.96 Aligned_cols=73 Identities=36% Similarity=0.582 Sum_probs=67.3
Q ss_pred cCcceEEeeccC-CCCCcceEEEEeCCCCCCCC-----CccEEEEEEcCHHHHHHhhcCCCCC----CCCCCcccEEEEE
Q psy1031 381 TGAGILSMANSG-PDTNGSQFFITLAPTQWLDG-----KHAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILKT 450 (456)
Q Consensus 381 ~~~G~l~ma~~~-~~~~~sqFfI~~~~~~~ld~-----~~~vfG~V~~G~~~l~~i~~~~~~~----~~~P~~~i~I~~~ 450 (456)
..+|+||||+.+ ||+|+|||||+++++++||+ +|+|||+|++|||+|++|+++++++ +++|..+|+|.+|
T Consensus 107 ~~~G~lama~~~~~~sn~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~ 186 (190)
T PRK10903 107 NTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA 186 (190)
T ss_pred CCCcEEEeCCCCCCCCcccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEE
Confidence 349999999975 99999999999999999984 8999999999999999999999976 4799999999999
Q ss_pred EEe
Q psy1031 451 HVR 453 (456)
Q Consensus 451 ~v~ 453 (456)
+|+
T Consensus 187 ~v~ 189 (190)
T PRK10903 187 KVL 189 (190)
T ss_pred EEe
Confidence 986
No 20
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.97 E-value=8.8e-31 Score=235.39 Aligned_cols=78 Identities=35% Similarity=0.586 Sum_probs=68.3
Q ss_pred ccccccCcceEEeeccC-CCCCcceEEEEeCCCCCCC-------C-CccEEEEEEcCHHHHHHhhcCCCCC----CCCCC
Q psy1031 376 EELKHTGAGILSMANSG-PDTNGSQFFITLAPTQWLD-------G-KHAIFGRIYSGMSVVKRIGLVETDK----NDRPV 442 (456)
Q Consensus 376 ~~~~h~~~G~l~ma~~~-~~~~~sqFfI~~~~~~~ld-------~-~~~vfG~V~~G~~~l~~i~~~~~~~----~~~P~ 442 (456)
..++| .+|+||||+.+ |++++|||||+++++++|| + +|+|||+|++|||+|++|+++.+++ +++|.
T Consensus 74 ~~~~~-~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~ 152 (164)
T PRK10791 74 NGLKN-TRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPK 152 (164)
T ss_pred ccccC-CCcEEEECCCCCcCCccceEEEEecCchhhcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcC
Confidence 34456 59999999985 9999999999999988776 3 7999999999999999999999976 36999
Q ss_pred cccEEEEEEEee
Q psy1031 443 DDVKILKTHVRN 454 (456)
Q Consensus 443 ~~i~I~~~~v~~ 454 (456)
.+|+|.+|.|.+
T Consensus 153 ~~v~I~~~~i~~ 164 (164)
T PRK10791 153 EDVIIESVTVSE 164 (164)
T ss_pred CCeEEEEEEEeC
Confidence 999999998753
No 21
>KOG0111|consensus
Probab=99.97 E-value=1.7e-31 Score=239.04 Aligned_cols=101 Identities=52% Similarity=0.853 Sum_probs=96.3
Q ss_pred cCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHH
Q psy1031 351 AGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKR 429 (456)
Q Consensus 351 q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~ 429 (456)
||||.+ ++|+||-+|||..|+||+ +.|+|..+|+|||||+|+|+||||||||.....||||+++|||.|++||+||++
T Consensus 196 qggdftn~ngtggksiygkkfdden-f~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~~vvrq 274 (298)
T KOG0111|consen 196 QGGDFTNGNGTGGKSIYGKKFDDEN-FTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQ 274 (298)
T ss_pred cCCccccCCCCCCcccccccccccc-eeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchHHHHHH
Confidence 788888 899999999999999997 899999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCcccEEEEEEEe
Q psy1031 430 IGLVETDKNDRPVDDVKILKTHVR 453 (456)
Q Consensus 430 i~~~~~~~~~~P~~~i~I~~~~v~ 453 (456)
+++.++. .++|...|+|.+|+-+
T Consensus 275 ~e~qgsk-sgkp~qkv~i~~cge~ 297 (298)
T KOG0111|consen 275 VEQQGSK-SGKPQQKVKIVECGEI 297 (298)
T ss_pred HHhccCC-CCCcceEEEEEecccc
Confidence 9998885 7999999999999865
No 22
>KOG0885|consensus
Probab=99.97 E-value=9.4e-31 Score=250.68 Aligned_cols=104 Identities=52% Similarity=0.831 Sum_probs=100.7
Q ss_pred cCCCCCCCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEc-CHHHHHH
Q psy1031 351 AGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYS-GMSVVKR 429 (456)
Q Consensus 351 q~Gd~~~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~-G~~~l~~ 429 (456)
|||||+++|+||++|||.+|++|+|+++.+.++|+|+|||.+.+.||||||+||+++|+|++++++||+|+- -+..+-+
T Consensus 64 Qggdp~~~gtGgesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk~tiFGKVtGdtIYn~lr 143 (439)
T KOG0885|consen 64 QGGDPTGTGTGGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNKHTIFGKVTGDTIYNMLR 143 (439)
T ss_pred ccCCCCCCCCCccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhcccCceeeeecchhhhhhhh
Confidence 899999999999999999999999999999999999999999999999999999999999999999999994 8889999
Q ss_pred hhcCCCCCCCCCCcccEEEEEEEee
Q psy1031 430 IGLVETDKNDRPVDDVKILKTHVRN 454 (456)
Q Consensus 430 i~~~~~~~~~~P~~~i~I~~~~v~~ 454 (456)
|..++++.+.||..+-+|.+|+|+.
T Consensus 144 i~e~eida~~Rp~~p~kI~s~EV~~ 168 (439)
T KOG0885|consen 144 ISEVEIDADDRPVDPPKIKSVEVLI 168 (439)
T ss_pred hcccccccccCCCCccceeeeEeec
Confidence 9999999999999999999999974
No 23
>KOG0415|consensus
Probab=99.97 E-value=2.8e-30 Score=245.43 Aligned_cols=105 Identities=44% Similarity=0.791 Sum_probs=98.2
Q ss_pred cCCCCCCCCCCCcccccc-------cccccccccccccCcceEEeeccCCCCCcceEEEEeCCC-CCCCCCccEEEEEEc
Q psy1031 351 AGGDPTGTGRGGSSIYGK-------TFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPT-QWLDGKHAIFGRIYS 422 (456)
Q Consensus 351 q~Gd~~~~g~g~~~~~g~-------~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~-~~ld~~~~vfG~V~~ 422 (456)
|+|||+|+|.||.+|||. .|++|+.+.++|.+.|+|||++.|.|-+||||||||+++ ..|||+|+|||+|+|
T Consensus 52 QTGDPtGtG~GG~si~~~lyG~q~rffeaE~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~htvfGqV~E 131 (479)
T KOG0415|consen 52 QTGDPTGTGDGGESIYGVLYGEQARFFEAEFLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHTVFGQVAE 131 (479)
T ss_pred ecCCCCCCCCCcceeeeecccccchhhhhhhcccccccccceEEeecCCcccccceEEEEccccccccccccceeeehhh
Confidence 788888888888888864 468899999999999999999999999999999999985 789999999999999
Q ss_pred CHHHHHHhhcCCCCCCCCCCcccEEEEEEEeec
Q psy1031 423 GMSVVKRIGLVETDKNDRPVDDVKILKTHVRNT 455 (456)
Q Consensus 423 G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~~ 455 (456)
|||+|.+|+.+-++++++|.++|+|.+..|++|
T Consensus 132 G~dtl~kiNea~vD~~~rPykdIRI~HTiiLdD 164 (479)
T KOG0415|consen 132 GFDTLTKINEAIVDPKNRPYKDIRIKHTIILDD 164 (479)
T ss_pred hHHHHHHHHHHhcCCCCCcccceeeeeeEEecC
Confidence 999999999999999999999999999999986
No 24
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.97 E-value=8.8e-30 Score=227.38 Aligned_cols=70 Identities=41% Similarity=0.579 Sum_probs=63.6
Q ss_pred cCcceEEeeccC-CCCCcceEEEEeCCCCCCCC-----CccEEEEEEcCHHHHHHhhcCCCCCC----CCCCcccEEEEE
Q psy1031 381 TGAGILSMANSG-PDTNGSQFFITLAPTQWLDG-----KHAIFGRIYSGMSVVKRIGLVETDKN----DRPVDDVKILKT 450 (456)
Q Consensus 381 ~~~G~l~ma~~~-~~~~~sqFfI~~~~~~~ld~-----~~~vfG~V~~G~~~l~~i~~~~~~~~----~~P~~~i~I~~~ 450 (456)
..+|+||||+.+ |++++|||||+++++++||+ +|+|||+|++|||+|++|++++++.+ ++|..+|+|.++
T Consensus 76 ~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~~ 155 (155)
T cd01920 76 NTRGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIESA 155 (155)
T ss_pred CCceEEEECCCCCCCCccceEEEECCCchhcCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEEC
Confidence 359999999976 99999999999999999995 79999999999999999999999764 689999999864
No 25
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.95 E-value=1.3e-27 Score=211.84 Aligned_cols=81 Identities=53% Similarity=0.823 Sum_probs=72.0
Q ss_pred cccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEE
Q psy1031 369 TFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKIL 448 (456)
Q Consensus 369 ~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~ 448 (456)
.+++|......|..+|+|||++.++++++|||||++++.++||++|+|||+|++|||+|++|++.+++++++|..+|+|.
T Consensus 66 ~~~~E~~~~~~~~~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~ 145 (146)
T cd00317 66 KFPDENFPLKYHHRRGTLSMANAGPNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS 145 (146)
T ss_pred ccCCccccCcCcCCCcEEEEeeCCCCCcccEEEEECCCCcccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence 44455544444667999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred E
Q psy1031 449 K 449 (456)
Q Consensus 449 ~ 449 (456)
+
T Consensus 146 ~ 146 (146)
T cd00317 146 D 146 (146)
T ss_pred C
Confidence 3
No 26
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.95 E-value=2.3e-27 Score=215.59 Aligned_cols=67 Identities=30% Similarity=0.532 Sum_probs=57.7
Q ss_pred cccccCcceEEeeccC--CCCCcceEEEEeC-------CCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEE
Q psy1031 377 ELKHTGAGILSMANSG--PDTNGSQFFITLA-------PTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447 (456)
Q Consensus 377 ~~~h~~~G~l~ma~~~--~~~~~sqFfI~~~-------~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I 447 (456)
...|..+|+||||+++ ||+++|||||+++ +.++||++|+|||+|++|||+|++|+.. -.|
T Consensus 100 ~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~g-----------d~i 168 (176)
T cd01924 100 VLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKVG-----------DKI 168 (176)
T ss_pred ccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCceEEEEEecCHHHHHhhcCC-----------CEE
Confidence 3445569999999987 7999999999998 7899999999999999999999999754 247
Q ss_pred EEEEEee
Q psy1031 448 LKTHVRN 454 (456)
Q Consensus 448 ~~~~v~~ 454 (456)
.+++|+.
T Consensus 169 ~~~~~~~ 175 (176)
T cd01924 169 ESARVVE 175 (176)
T ss_pred EEEEEec
Confidence 7887764
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.94 E-value=2.9e-26 Score=205.33 Aligned_cols=80 Identities=50% Similarity=0.798 Sum_probs=71.7
Q ss_pred cccccc-ccccccCcceEEeeccC--CCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccE
Q psy1031 370 FADEIH-EELKHTGAGILSMANSG--PDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVK 446 (456)
Q Consensus 370 ~~~e~~-~~~~h~~~G~l~ma~~~--~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~ 446 (456)
+++|.. ..+.| .+|+|+|++.+ +++++|||||++++.++||++|+|||+|++||++|++|++.++++ +|.++|+
T Consensus 73 ~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~--~p~~~v~ 149 (155)
T PF00160_consen 73 IPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE--RPKQDVT 149 (155)
T ss_dssp BSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT--EBSSTEE
T ss_pred cccccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC--ccCCCeE
Confidence 555543 24667 59999999975 899999999999999999999999999999999999999999876 9999999
Q ss_pred EEEEEE
Q psy1031 447 ILKTHV 452 (456)
Q Consensus 447 I~~~~v 452 (456)
|.+|+|
T Consensus 150 I~~cgv 155 (155)
T PF00160_consen 150 ISSCGV 155 (155)
T ss_dssp EEEEEE
T ss_pred EEEeEC
Confidence 999997
No 28
>KOG0865|consensus
Probab=99.90 E-value=2e-24 Score=191.71 Aligned_cols=118 Identities=46% Similarity=0.729 Sum_probs=109.0
Q ss_pred cCCcccee-eeeccceeecCcCCCCC-CCCCCCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCC
Q psy1031 332 GEFSPIQR-MEKIGNHITSGAGGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQW 409 (456)
Q Consensus 332 ~~~s~~~r-v~~iwN~i~~~q~Gd~~-~~g~g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ 409 (456)
|+.+.||| +..+.++++ ||||.+ ++|+||.+||+..|+||+ +.++|..+|+|+|||.+||+||||||||.+..+|
T Consensus 48 yk~s~fhr~~~~~~~fm~--qggDft~hngtggkSiy~ekF~Den-FilkhtgpGiLSmaNagpntngsqffictaktew 124 (167)
T KOG0865|consen 48 YKGSCFHRLIPIIPGFMC--QGGDFTCHNGTGGKSIYGEKFDDEN-FILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 124 (167)
T ss_pred cccchhhhccccccceee--ccCcccccCCccceEecccccCCcC-cEEecCCCCeeehhhcCCCccccEEEEEcccccc
Confidence 78889999 666678888 999998 899999999999999996 8999999999999999999999999999999999
Q ss_pred CCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEe
Q psy1031 410 LDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR 453 (456)
Q Consensus 410 ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~ 453 (456)
||++++|||+|.+||+++++++..+.. +++|..+|.|.+|+.+
T Consensus 125 LdgkhVVfGkv~eGm~iv~a~e~~gs~-~gk~~~~i~i~dcg~l 167 (167)
T KOG0865|consen 125 LDGKHVVFGKVKEGMDIVEAMERFGSR-NGKTSKKITIADCGQL 167 (167)
T ss_pred ccCceeEcCceEcccchhhhhhccCCc-CCcccccEEEecCCcC
Confidence 999999999999999999999986664 7899999999999853
No 29
>KOG0865|consensus
Probab=98.44 E-value=3e-07 Score=82.19 Aligned_cols=85 Identities=33% Similarity=0.483 Sum_probs=70.8
Q ss_pred hhheeeeeeeeecccceeeeeeeeeEEEEEeecceEEEEEecCCCCchhhhhHHHhhhcc---cccceeee---eeccee
Q psy1031 28 VEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHR---IIRDFM 101 (456)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~~---y~~~~f~r---vi~df~ 101 (456)
+++.+|+++.+..++. |++.++||.+..|+|++||.+||+..- |++..||| .+++||
T Consensus 2 ~~~~vf~d~~~~~~p~-----------------gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm 64 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPL-----------------GRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFM 64 (167)
T ss_pred CCCeeeeeeeecCccc-----------------cccceecccccCcchHhhhhhcccCCCccccccchhhhcccccccee
Confidence 4577888888886666 999999999999999999999998533 99999999 345799
Q ss_pred EEe------eccCCCccccchhhhhhhccccccC
Q psy1031 102 IQA------MGVGGASNVNQLQDVIQNLHCWCNE 129 (456)
Q Consensus 102 iq~------~g~g~~s~~~~Lq~~l~~l~~W~~~ 129 (456)
+|+ .|++++|+|..-+++-+-+.....-
T Consensus 65 ~qggDft~hngtggkSiy~ekF~DenFilkhtgp 98 (167)
T KOG0865|consen 65 CQGGDFTCHNGTGGKSIYGEKFDDENFILKHTGP 98 (167)
T ss_pred eccCcccccCCccceEecccccCCcCcEEecCCC
Confidence 997 4899999998888777766666553
No 30
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT). This subfamily contains both non-LTR retrotransposons and non-LTR retrovirus RTs. RTs catalyze the conversion of single-stranded RNA into double-stranded DNA for integration into host chromosomes. RT is a multifunctional enzyme with RNA-directed DNA polymerase, DNA directed DNA polymerase and ribonuclease hybrid (RNase H) activities.
Probab=97.94 E-value=3.3e-06 Score=79.41 Aligned_cols=81 Identities=30% Similarity=0.459 Sum_probs=67.6
Q ss_pred ccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031 89 NGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI 168 (456)
Q Consensus 89 ~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~ 168 (456)
.+....|++||+++.+.+.. ..++..++.+..|+.++|+.+|++||+++.++....... .+.+++..+..++.+
T Consensus 140 ~~~~~~~yaDD~~i~~~~~~-----~~~~~~~~~~~~~~~~~gl~in~~Kt~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 213 (220)
T cd01650 140 PGITHLAYADDIVLFSEGKS-----RKLQELLQRLQEWSKESGLKINPSKSKVMLIGNKKKRLK-DITLNGTPIEAVETF 213 (220)
T ss_pred CccceEEeccceeeeccCCH-----HHHHHHHHHHHHHHHHcCCEEChhheEEEEecCCCcchh-hhhhcCCcccCCCCC
Confidence 46678899999998864332 578899999999999999999999999999987655432 378889999999999
Q ss_pred eeeEEEe
Q psy1031 169 KDLGVTF 175 (456)
Q Consensus 169 kyLGV~l 175 (456)
||||+.|
T Consensus 214 kyLG~~i 220 (220)
T cd01650 214 KYLGVTI 220 (220)
T ss_pred eeccccC
Confidence 9999875
No 31
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=96.18 E-value=0.0045 Score=50.18 Aligned_cols=61 Identities=21% Similarity=0.202 Sum_probs=48.9
Q ss_pred cccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeee
Q psy1031 88 YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNN 167 (456)
Q Consensus 88 y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~ 167 (456)
..+...-|++||+++.+... ..+..+..+..|+.++|+.+|++||+.+ ...+.
T Consensus 38 ~~~~~~~~Y~DD~~i~~~~~-------~~~~~~~~l~~~l~~~gl~ln~~Kt~~~--------------------~~~~~ 90 (98)
T cd00304 38 LLDITLIRYVDDLVVIAKSE-------QQAVKKRELEEFLARLGLNLSDEKTQFT--------------------EKEKK 90 (98)
T ss_pred cCCceEEEeeCcEEEEeCcH-------HHHHHHHHHHHHHHHcCcEEChheeEEe--------------------cCCCC
Confidence 45678889999998885433 5788889999999999999999999975 23566
Q ss_pred eeeeEEEe
Q psy1031 168 IKDLGVTF 175 (456)
Q Consensus 168 ~kyLGV~l 175 (456)
++|||..+
T Consensus 91 ~~flG~~~ 98 (98)
T cd00304 91 FKFLGILV 98 (98)
T ss_pred eeeeceeC
Confidence 88888753
No 32
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons. The enzyme catalysing polymerisation is an RNA-directed DNA-polymerase, or reverse trancriptase (RT) (2.7.7.49 from EC). Reverse transcriptase occurs in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. Retroviral reverse transcriptase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The discovery of retroelements in the prokaryotes raises intriguing questions concerning their roles in bacteria and the origin and evolution of reverse transcriptases and whether the bacterial reverse transcriptases are older than eukaryotic reverse transcriptases [].; GO: 0003723 RNA binding, 0003964 RNA-directed DNA polymerase activity, 0006278 RNA-dependent DNA replication; PDB: 1MU2_B 3RWE_C 3DU6_B 3DU5_A 3KYL_A 2WOM_B 1DTQ_A 2OPS_A 3FFI_A 1VRU_B ....
Probab=96.11 E-value=0.0015 Score=60.56 Aligned_cols=61 Identities=26% Similarity=0.449 Sum_probs=50.3
Q ss_pred ccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031 89 NGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI 168 (456)
Q Consensus 89 ~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~ 168 (456)
.+..+.|++||+++.+.. ...+++.++.+.+|++++||.+|++||+.++ ..+.+
T Consensus 154 ~~~~~~rY~DD~~i~~~~------~~~~~~~~~~i~~~~~~~gl~ln~~Kt~~~~--------------------~~~~~ 207 (214)
T PF00078_consen 154 PDISYLRYADDILIISKS------KEELQKILEKISQWLEELGLKLNPEKTKILH--------------------PSDSV 207 (214)
T ss_dssp TTSEEEEETTEEEEEESS------HHHHHHHHHHHHHHHHHTTSBCSSTTTSCS----------------------ESSE
T ss_pred ccccceEeccccEEEECC------HHHHHHHHHHHHHHHHHCCCEEChHHEEEEe--------------------CCCCE
Confidence 567899999999988643 2348999999999999999999999999765 56789
Q ss_pred eeeEEEe
Q psy1031 169 KDLGVTF 175 (456)
Q Consensus 169 kyLGV~l 175 (456)
+|||+.|
T Consensus 208 ~~lG~~i 214 (214)
T PF00078_consen 208 KFLGYVI 214 (214)
T ss_dssp EETTEEE
T ss_pred EEEeEEC
Confidence 9999875
No 33
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=95.95 E-value=0.0062 Score=51.77 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=50.4
Q ss_pred cceeeeeecceeEEeeccCCCccccchhhhhhhccccc-cCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031 90 GIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWC-NENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI 168 (456)
Q Consensus 90 ~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~-~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~ 168 (456)
+..+.|++||+++.+.. ....+..++.+..|. +++||.+|++||++..... .....+.+
T Consensus 52 ~~~~~rYaDD~li~~~~------~~~~~~~~~~l~~~l~~~~gl~iN~~Kt~~~~~~~--------------~~~~~~~~ 111 (119)
T cd01648 52 DSLLLRLVDDFLLITTS------LDKAIKFLNLLLRGFINQYKTFVNFDKTQINFSFA--------------QLDSSDLI 111 (119)
T ss_pred CceEEEEeCcEEEEeCC------HHHHHHHHHHHHHhhHHhhCeEECcccceeecccc--------------ccCCCCcc
Confidence 45678999999888533 245788889999887 9999999999999875432 11233568
Q ss_pred eeeEEEec
Q psy1031 169 KDLGVTFQ 176 (456)
Q Consensus 169 kyLGV~ld 176 (456)
.|||+.|+
T Consensus 112 ~flG~~i~ 119 (119)
T cd01648 112 PWCGLLIN 119 (119)
T ss_pred CceeEeeC
Confidence 99998875
No 34
>PF09004 DUF1891: Domain of unknown function (DUF1891); InterPro: IPR015095 This domain is found at the extreme N terminus of eukaryotic alkylated DNA repair protein homologs. ; GO: 0008168 methyltransferase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 2CQ2_A 3THT_C 3THP_A.
Probab=95.95 E-value=0.0019 Score=43.90 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=8.0
Q ss_pred chhHHHHHHHHHHHHHHHHhcccCCCCChhhHHHhhhheeee
Q psy1031 181 FNLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNLYYTYVRS 222 (456)
Q Consensus 181 f~~Hi~~~~~ka~~~l~~L~r~~~~~~~~~~~~~ly~a~V~p 222 (456)
|+.|+..+.+||.+++++|++..+...++..+..+|+++|.+
T Consensus 1 W~~n~~~~~KKa~qRlyFLRkl~k~~~~~~~l~lfY~s~IeS 42 (42)
T PF09004_consen 1 WTSNTTSLYKKAQQRLYFLRKLRKFNVDSKLLTLFYHSVIES 42 (42)
T ss_dssp -------------------------SS-----SHTTTTT---
T ss_pred CCcchHHHHHHHHhHHHHHHHHHHccchhHHHHHHHHHHhcC
Confidence 788999999999999999988877788888899999998753
No 35
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=95.55 E-value=0.013 Score=55.05 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=51.3
Q ss_pred ccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031 89 NGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI 168 (456)
Q Consensus 89 ~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~ 168 (456)
.+..+.|++||+++.+..... ..+++.++.+..|+.+.||.+|++||+++... +..
T Consensus 133 ~~~~~~RYaDD~~i~~~~~~~----~~~~~~~~~i~~~l~~~gL~ln~~Kt~i~~~~--------------------~~~ 188 (214)
T cd03487 133 NGLTYTRYADDITFSSNKKLK----EALDKLLEIIRSILSEEGFKINKSKTRISSKG--------------------SRQ 188 (214)
T ss_pred cCCeEEEEeccEEEEccccch----hHHHHHHHHHHHHHHHCCceeCCCceEEccCC--------------------CCc
Confidence 356789999999987533211 36788889999999999999999999988652 235
Q ss_pred eeeEEEecCC
Q psy1031 169 KDLGVTFQYN 178 (456)
Q Consensus 169 kyLGV~ld~~ 178 (456)
.+||+.+.++
T Consensus 189 ~~~G~~i~~~ 198 (214)
T cd03487 189 IVTGLVVNNG 198 (214)
T ss_pred EEEEEEEeCC
Confidence 6888888765
No 36
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).
Probab=95.54 E-value=0.0061 Score=57.19 Aligned_cols=62 Identities=24% Similarity=0.396 Sum_probs=50.2
Q ss_pred ccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeeee
Q psy1031 89 NGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNNI 168 (456)
Q Consensus 89 ~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~ 168 (456)
.+....|++||+.+.+.+.. .++..++.+..|+++.||.+|++||++++++ .+.+
T Consensus 165 ~~~~~~rY~DD~~i~~~~~~------~~~~~~~~i~~~~~~~gl~ln~~Kt~i~~~~-------------------~~~~ 219 (226)
T cd01651 165 RRLRYVRYADDFVIGVRGPK------EAEEIKELIREFLEELGLELNPEKTRITHFK-------------------SEGF 219 (226)
T ss_pred CceEEEEecCceEEecCCHH------HHHHHHHHHHHHHHHcCCeechhhcceeecC-------------------CCCC
Confidence 55678899999988854332 2788889999999999999999999999985 4567
Q ss_pred eeeEEEe
Q psy1031 169 KDLGVTF 175 (456)
Q Consensus 169 kyLGV~l 175 (456)
.|||..|
T Consensus 220 ~fLG~~~ 226 (226)
T cd01651 220 DFLGFTF 226 (226)
T ss_pred eeCCeEC
Confidence 7888764
No 37
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.
Probab=95.42 E-value=0.012 Score=52.54 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=53.9
Q ss_pred cccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecCCCCceeeeEecCeEEeeeee
Q psy1031 88 YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLERVNN 167 (456)
Q Consensus 88 y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~ 167 (456)
..+..+.|++||+++.+.. ...+++.++.+..|.++.||.+|++||+.+++.... .+
T Consensus 80 ~~~~~~~RY~DD~~i~~~~------~~~~~~~~~~i~~~l~~~gL~ln~~Kt~~~~~~~~~-----------------~~ 136 (158)
T cd01646 80 LKGVDYVRYVDDIRIFADS------KEEAEEILEELKEFLAELGLSLNLSKTEILPLPEGT-----------------AS 136 (158)
T ss_pred cCCceEEEecCcEEEEcCC------HHHHHHHHHHHHHHHHHCCCEEChhhceeeecCCCC-----------------cc
Confidence 4678899999999998632 234688899999999999999999999999885321 56
Q ss_pred eeeeEEEecCC
Q psy1031 168 IKDLGVTFQYN 178 (456)
Q Consensus 168 ~kyLGV~ld~~ 178 (456)
+.+||..+...
T Consensus 137 ~~flg~~~~~~ 147 (158)
T cd01646 137 KDFLGYRFSPI 147 (158)
T ss_pred ccccceEeehh
Confidence 77788777654
No 38
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons. Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase.
Probab=93.55 E-value=0.12 Score=43.63 Aligned_cols=84 Identities=17% Similarity=0.104 Sum_probs=50.7
Q ss_pred eEEEEEeecceEEEEEecCCCCchhhhhHHHhhhcc----cccceeeeeecceeEEeeccCCCccccchhhhhhhccc-c
Q psy1031 52 LRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNY----YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHC-W 126 (456)
Q Consensus 52 ~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~~----y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~-W 126 (456)
....+.++.|...+..-+.....++..|..+...-+ ..+..+..++||+.+.+.. ++ ..++.+..+.. -
T Consensus 18 ~~~af~~~~~~~~~~~mp~Gl~~sp~~f~~~~~~i~~~~~~~~~~v~~Y~DDili~~~~---~~---~~~~~~~~l~~~~ 91 (119)
T cd03714 18 DLLGFAWQGETYQFKALPFGLSLAPRVFTKVVEALLAPLRLLGVRIFSYLDDLLIIASS---IK---TSEAVLRHLRATL 91 (119)
T ss_pred ceeeEEECCCcEEEEecCCcccchHHHHHHHHHHHHHHhhcCCeEEEEEecCeEEEeCc---HH---HHHHHHHHHHHHH
Confidence 344555666776666666666666655554333211 2345567788999887543 22 22333333332 4
Q ss_pred ccCCceeeecCCeEE
Q psy1031 127 CNENLMVLNLEKCKV 141 (456)
Q Consensus 127 ~~~~~L~~n~~Kt~~ 141 (456)
+.++|+.+|++||++
T Consensus 92 l~~~gl~ln~~K~~~ 106 (119)
T cd03714 92 LANLGFTLNLEKSKL 106 (119)
T ss_pred HHHcCCccChhhcEe
Confidence 789999999999986
No 39
>KOG0882|consensus
Probab=92.61 E-value=0.26 Score=50.26 Aligned_cols=123 Identities=15% Similarity=0.199 Sum_probs=87.9
Q ss_pred ccccccCCccceeeeeccceeecCcCCCCCCCCC-CCc-cccc----ccc-cccccccccccCcceEEeeccCCCCCcce
Q psy1031 327 NKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGR-GGS-SIYG----KTF-ADEIHEELKHTGAGILSMANSGPDTNGSQ 399 (456)
Q Consensus 327 ~kt~~~~~s~~~rv~~iwN~i~~~q~Gd~~~~g~-g~~-~~~g----~~~-~~e~~~~~~h~~~G~l~ma~~~~~~~~sq 399 (456)
|...|.+...+.++.+ +.+. |.||---.+. +|- -.|. ..+ .++.+..++|. .-++........-.+-+
T Consensus 134 ~q~~~fkklH~sPV~~--i~y~--qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~E 208 (558)
T KOG0882|consen 134 CQDGYFKKLHFSPVKK--IRYN--QAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSFE 208 (558)
T ss_pred CccceecccccCceEE--EEee--ccccceeeccccceeEeecCCCcccCcccccccccccc-chhhcccccccCccceE
Confidence 4455666666666666 5665 8887542221 111 1111 112 23455778886 55666666555556778
Q ss_pred EEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhcCCCCCCCCCCcccEEEEEEEee
Q psy1031 400 FFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN 454 (456)
Q Consensus 400 FfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~~~~~~~~~P~~~i~I~~~~v~~ 454 (456)
|++.-...+.+..+..|||+|..|-++++.|.++.++....|..++.|.++++.-
T Consensus 209 fsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgR 263 (558)
T KOG0882|consen 209 FSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGR 263 (558)
T ss_pred EccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhh
Confidence 9998888888999999999999999999999999999999999999999998754
No 40
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs). An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs.
Probab=91.97 E-value=0.77 Score=45.98 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=42.9
Q ss_pred ccccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCceeeecCCeEEEEeecC
Q psy1031 87 YYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTN 147 (456)
Q Consensus 87 ~y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~~n~~Kt~~~~f~~~ 147 (456)
.++|..++|+.||+++.+. ..+-......+.++++.-||++|++||.++.....
T Consensus 109 ~~~g~~l~RYaDD~vi~~~-------~~~a~~aw~~i~~fl~~lGLelN~eKT~iV~~~~~ 162 (346)
T cd01709 109 ATDGGLLYRLHDDLWFWGQ-------PETCAKAWKAIQEFAKVMGLELNKEKTGSVYLSDD 162 (346)
T ss_pred cCCCceEEEEcCeEEEEcC-------HHHHHHHHHHHHHHHHHcCceeccccceEEEeccC
Confidence 4679999999999999832 12345566678888889999999999999987643
No 41
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs). RTs catalyze the conversion of single-stranded RNA into double-stranded viral DNA for integration into host chromosomes. Proteins in this subfamily contain long terminal repeats (LTRs) and are multifunctional enzymes with RNA-directed DNA polymerase, DNA directed DNA polymerase, and ribonuclease hybrid (RNase H) activities. The viral RNA genome enters the cytoplasm as part of a nucleoprotein complex, and the process of reverse transcription generates in the cytoplasm forming a linear DNA duplex via an intricate series of steps. This duplex DNA is colinear with its RNA template, but contains terminal duplications known as LTRs that are not present in viral RNA. It has been proposed that two specialized template switches, known as strand-transfer reactions or "jumps", are required to generate the LTRs.
Probab=87.78 E-value=1.4 Score=41.21 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=48.7
Q ss_pred cceEEEEEecCCC---CchhhhhHHHhhhc---ccccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCcee
Q psy1031 60 MGEIIVELYWKHA---PNTCRNFAELCRRN---YYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLMV 133 (456)
Q Consensus 60 ~G~i~~~L~~~~~---P~t~~nf~~l~~~~---~y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~ 133 (456)
.|...+..-+... |.+...++.-+-.. .+.+..+.+++||+++.+. ......+.++.+.....++|+.
T Consensus 121 ~~~~~~~~lP~Gl~~SP~~f~~~m~~~l~~~~~~~~~~~~~~Y~DDili~s~------~~~~~~~~l~~v~~~l~~~gl~ 194 (213)
T cd01645 121 AKRYQWKVLPQGMKNSPTICQSFVAQALEPFRKQYPDIVIYHYMDDILIASD------LEGQLREIYEELRQTLLRWGLT 194 (213)
T ss_pred CceEEEEEeCCCCcChHHHHHHHHHHHHHHHHHHCCCeEEEEEcCCEEEEcC------CHHHHHHHHHHHHHHHHHCCCE
Confidence 5666666555554 44433333322111 1234456788999988742 2355678888899999999999
Q ss_pred eecCCeE
Q psy1031 134 LNLEKCK 140 (456)
Q Consensus 134 ~n~~Kt~ 140 (456)
+|++||+
T Consensus 195 ln~~K~~ 201 (213)
T cd01645 195 IPPEKVQ 201 (213)
T ss_pred eCHHHEe
Confidence 9999997
No 42
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and caulimoviruses. These elements can be divided into two major groups. One group contains retroviruses and DNA viruses whose propagation involves an RNA intermediate. They are grouped together with transposable elements containing long terminal repeats (LTRs). The other group, also called poly(A)-type retrotransposons, contain fungal mitochondrial introns and transposable elements that lack LTRs. Phylogenetic analysis suggests that ZFERV belongs to a distinct group of retroviruses.
Probab=77.83 E-value=3.7 Score=38.19 Aligned_cols=84 Identities=8% Similarity=-0.006 Sum_probs=50.4
Q ss_pred eEEEEEeecceEEEEEecCC---CCchhhhhHHHhhhcc---cccceeeeeecceeEEeeccCCCccccchhhhhhhccc
Q psy1031 52 LRSLVFHNMGEIIVELYWKH---APNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHC 125 (456)
Q Consensus 52 ~~v~~~t~~G~i~~~L~~~~---~P~t~~nf~~l~~~~~---y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~ 125 (456)
....+.++.|...+..-+.. +|.+...++.-+-..+ ..+.....++||..+.+ .......+.++.+..
T Consensus 109 ~~taf~~~~~~y~~~~lp~Gl~~sp~~f~~~~~~~l~~~~~~~~~~~~~~Y~DDili~s------~~~~e~~~~l~~v~~ 182 (210)
T cd03715 109 PLFAFEWEGQQYTFTRLPQGFKNSPTLFHEALARDLAPFPLEHEGTILLQYVDDLLLAA------DSEEDCLKGTDALLT 182 (210)
T ss_pred EeEEEEECCeeEEEEEEeccccCcHHHHHHHHHHHHHHHHhhCCCeEEEEECCcEEEec------CCHHHHHHHHHHHHH
Confidence 34455555565544444433 3333333332221222 23445556788888874 222346778888999
Q ss_pred cccCCceeeecCCeEE
Q psy1031 126 WCNENLMVLNLEKCKV 141 (456)
Q Consensus 126 W~~~~~L~~n~~Kt~~ 141 (456)
...++|+.+|++||+.
T Consensus 183 ~l~~~gl~l~~~K~~~ 198 (210)
T cd03715 183 HLGELGYKVSPKKAQI 198 (210)
T ss_pred HHHHCCCCcCHHHeeC
Confidence 9999999999999984
No 43
>KOG0546|consensus
Probab=77.68 E-value=1.4 Score=44.08 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=115.8
Q ss_pred hhheeeeeeeeecccceeeeeeeeeEEEEEeecceEEEEEecCCCCchhhhhHHHhhhc-----------ccccceeeee
Q psy1031 28 VEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRN-----------YYNGIKFHRI 96 (456)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~-----------~y~~~~f~rv 96 (456)
.+|++|+||.|.++.. |+|+|+||.+.+|+||+||++||++. .|+|+.||||
T Consensus 7 ~~pr~ffDISI~ge~~-----------------GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRV 69 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPA-----------------GRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRV 69 (372)
T ss_pred CCceEEEEEEeCCccc-----------------ceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhhee
Confidence 6799999999999999 99999999999999999999999864 3999999999
Q ss_pred ecceeEEe------eccCCCccccchhhhhhhccccccCCcee-----eecCCeEEEEeecCCCCceeeeEecCeEEeee
Q psy1031 97 IRDFMIQA------MGVGGASNVNQLQDVIQNLHCWCNENLMV-----LNLEKCKVMSFYTNKHPILINYNINNVQLERV 165 (456)
Q Consensus 97 i~df~iq~------~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~-----~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~ 165 (456)
|++||||| .|+||+|||+..++|-+-...+-...-|+ .|++-+|+++.+..-.+++....+.|++|...
T Consensus 70 iK~FMiQgGDfs~gnGtGGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~ 149 (372)
T KOG0546|consen 70 IKNFMIQGGDFSEGNGTGGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGK 149 (372)
T ss_pred eecceeeccccccCCCCCcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCceeEEeeEeech
Confidence 99999999 49999999999999988666665544444 68999999998877777888899999999988
Q ss_pred eeeeeeE-EEecCC
Q psy1031 166 NNIKDLG-VTFQYN 178 (456)
Q Consensus 166 ~~~kyLG-V~ld~~ 178 (456)
..++.+- +-.|..
T Consensus 150 ~VVr~IEn~~~d~~ 163 (372)
T KOG0546|consen 150 EVVREIENLETDEE 163 (372)
T ss_pred hHHHHHhccccccC
Confidence 8887763 444443
No 44
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=66.81 E-value=7.3 Score=40.78 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=42.6
Q ss_pred cccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhc
Q psy1031 367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGL 432 (456)
Q Consensus 367 g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~ 432 (456)
|...+.|+ .....+|++.+-+.|.+. -..||--.+-+ -.-.|+|+|+|+.|||+++--+.
T Consensus 244 g~~~p~En---~~~R~rGtVTVRn~G~G~--G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~ 303 (503)
T TIGR03268 244 GLDKPEEN---IEKRRRGAVTVRNSGVGE--GRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE 303 (503)
T ss_pred CccCCccc---cCcccceeEEEEeeccCc--eeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence 45566664 234468999999987543 35788776644 34569999999999999875544
No 45
>PRK00969 hypothetical protein; Provisional
Probab=64.56 E-value=8.1 Score=40.56 Aligned_cols=60 Identities=15% Similarity=0.309 Sum_probs=42.6
Q ss_pred cccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHHHhhc
Q psy1031 367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGL 432 (456)
Q Consensus 367 g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~~i~~ 432 (456)
|...+.|+ .....+|++.+-+.|.+. -..||--.+-+ -.-.|+|+|+|+.|||+++--+.
T Consensus 247 g~~~p~En---~~~R~~GtVTVRt~G~g~--G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~ 306 (508)
T PRK00969 247 GLKIPEEN---FEPRRRGTVTVRTAGVGV--GKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE 306 (508)
T ss_pred CccCCccc---cCccccceEEEEeeccCc--eeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence 45566664 234458999999987553 35788776644 34569999999999999875544
No 46
>KOG0884|consensus
Probab=61.48 E-value=11 Score=31.74 Aligned_cols=121 Identities=24% Similarity=0.496 Sum_probs=99.9
Q ss_pred eEEEEEeecceEEEEEecCCCCchhhhhHHHhhhcccccceeeeeecceeEEe-----eccCCCccccchhh-hhhhccc
Q psy1031 52 LRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA-----MGVGGASNVNQLQD-VIQNLHC 125 (456)
Q Consensus 52 ~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~~y~~~~f~rvi~df~iq~-----~g~g~~s~~~~Lq~-~l~~l~~ 125 (456)
+.|+++|..|+|.||+|.+++|++|+||+.+|...||+++.|||-++|||+|+ +|.||+|+++.-++ +..+..+
T Consensus 1 msvtlht~~gdikiev~~e~tpktce~~l~~~~~~~~n~~~~~~~~~~f~v~~~~~~~tgrgg~siwg~~fede~~~~lk 80 (161)
T KOG0884|consen 1 MSVTLHTDVGDIKIEVFCERTPKTCENFLALCASDYYNGCIFHRNIKGFMVQTGDPTHTGRGGNSIWGKKFEDEYSEYLK 80 (161)
T ss_pred CeEEEeeccCcEEEEEEecCChhHHHHHHHHhhhhhccceeecCCCCCcEEEeCCCCCCCCCCccccCCcchHHHHHHHh
Confidence 35899999999999999999999999999999999999999999999999998 58999999987554 3333333
Q ss_pred cccCCcee-----eecCCeEEEEeecCCCCceeeeEecCeEEeeeeeeeeeE
Q psy1031 126 WCNENLMV-----LNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLG 172 (456)
Q Consensus 126 W~~~~~L~-----~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~kyLG 172 (456)
.-.+.-++ .|.+.+|+++...+...++..|++.|..|+..+++.-|.
T Consensus 81 h~~rg~vsmanngp~tn~sqffity~kq~hldmkytvfgkvidg~etldele 132 (161)
T KOG0884|consen 81 HNVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELE 132 (161)
T ss_pred hccceeEEcccCCCCCCCceEEEEecCCCccceeEeeeeeeccchhhHHHHh
Confidence 33333222 578889998888888888999999999998777655443
No 47
>KOG0881|consensus
Probab=45.64 E-value=9.5 Score=32.39 Aligned_cols=124 Identities=37% Similarity=0.568 Sum_probs=104.0
Q ss_pred eeeEEEEEeecceEEEEEecCCCCchhhhhHHHhhhcccccceeeeeecceeEEe-----eccCCCccccc-hhhhhhhc
Q psy1031 50 IILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA-----MGVGGASNVNQ-LQDVIQNL 123 (456)
Q Consensus 50 ~~~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~~y~~~~f~rvi~df~iq~-----~g~g~~s~~~~-Lq~~l~~l 123 (456)
....|.++|+.|.|++|||.+.+|+||.||..|++.+||+|..|||+|+|||||| +|.|++|+|+. ..++++.-
T Consensus 8 q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v~FHRii~DFmiQGGDPTGTGRGGaSIYG~kF~DEi~~d 87 (164)
T KOG0881|consen 8 QPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGVIFHRIIKDFMIQGGDPTGTGRGGASIYGDKFEDEIHSD 87 (164)
T ss_pred CCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccceeeeehhhhheeecCCCCCCCCCccccccchhhhhhhhh
Confidence 3568999999999999999999999999999999999999999999999999998 48899999976 45566666
Q ss_pred cccccCCcee-----eecCCeEEEEeecCCCCceeeeEecCeEEeeeeeeeeeEE
Q psy1031 124 HCWCNENLMV-----LNLEKCKVMSFYTNKHPILINYNINNVQLERVNNIKDLGV 173 (456)
Q Consensus 124 ~~W~~~~~L~-----~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~~~~kyLGV 173 (456)
.......-|+ .|++-+|+++.-.....++.+.+|.|........+|-+|.
T Consensus 88 LkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~ 142 (164)
T KOG0881|consen 88 LKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGM 142 (164)
T ss_pred hcccchhhhhhhccCCCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcc
Confidence 6665555444 5788888887766667778888898888887777777774
No 48
>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template. RT catalyzes DNA replication from an RNA template, and is responsible for the replication of retroelements. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs are present in a variety of mobile elements, including retrotransposons, retroviruses, group II introns, bacterial msDNAs, hepadnaviruses, and Caulimoviruses.
Probab=36.98 E-value=45 Score=28.84 Aligned_cols=81 Identities=15% Similarity=0.087 Sum_probs=42.8
Q ss_pred EEEeecceEEEEEecCCCCchhhhhHHHhhhcc--cccceeeeeecceeEEeeccCCCccccchhhhhhhccccccCCce
Q psy1031 55 LVFHNMGEIIVELYWKHAPNTCRNFAELCRRNY--YNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQNLHCWCNENLM 132 (456)
Q Consensus 55 ~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~~--y~~~~f~rvi~df~iq~~g~g~~s~~~~Lq~~l~~l~~W~~~~~L 132 (456)
.+.++.|...+..-+-....+...|......-+ ..+...-.++||+++.+.. .......++.+..-..++++
T Consensus 83 ~~~~~~~~~~~~~~p~G~~~s~~~~~~~~~~~l~~~~~~~~~~y~DDi~i~~~~------~~~~~~~~~~~~~~l~~~~~ 156 (177)
T cd01647 83 AFRTPFGLYEYTRMPFGLKNAPATFQRLMNKILGDLLGDFVEVYLDDILVYSKT------EEEHLEHLREVLERLREAGL 156 (177)
T ss_pred eeecCCCccEEEEecCCCccHHHHHHHHHHhhhccccccccEEEecCccccCCC------HHHHHHHHHHHHHHHHHcCC
Confidence 344455555444333333333333332222111 1123344567887777432 23344555666666778999
Q ss_pred eeecCCeEE
Q psy1031 133 VLNLEKCKV 141 (456)
Q Consensus 133 ~~n~~Kt~~ 141 (456)
.+|.+||+.
T Consensus 157 ~~~~~K~~~ 165 (177)
T cd01647 157 KLNPEKCEF 165 (177)
T ss_pred EeCHHHcee
Confidence 999999974
No 49
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=29.88 E-value=34 Score=34.87 Aligned_cols=62 Identities=16% Similarity=0.379 Sum_probs=0.0
Q ss_pred CCcccccccccccccccccccCcceEEeeccCCCCCcceEEEEeCCCCCCCCCccEEEEEEcCHHHHH
Q psy1031 361 GGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVK 428 (456)
Q Consensus 361 g~~~~~g~~~~~e~~~~~~h~~~G~l~ma~~~~~~~~sqFfI~~~~~~~ld~~~~vfG~V~~G~~~l~ 428 (456)
+..+..+...+.|+ ..+.. +|++.+-|.|-++.-.=.|=--..+. -.|.|.|||.+||+++|
T Consensus 240 s~~~lq~~~~~~en-~d~Re--rG~iTvRn~GvgeGrvYIyRedR~ss---~sHnvVGrV~eGiELid 301 (512)
T COG4070 240 SDDTLQEEKVPEEN-FDLRE--RGAITVRNVGVGEGRVYIYREDRPSS---LSHNVVGRVIEGIELID 301 (512)
T ss_pred eccccccccCChhh-hhhhh--cceEEEEeeecccceEEEEecCCCCc---cccceeeeeecceEEEE
No 50
>KOG0111|consensus
Probab=28.11 E-value=44 Score=31.35 Aligned_cols=123 Identities=22% Similarity=0.263 Sum_probs=100.7
Q ss_pred cchhheeeeeeeeecccceeeeeeeeeEEEEEeecceEEEEEecCCCCchhhhhHHHhhhc--c-cccceeeeeecceeE
Q psy1031 26 DLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRN--Y-YNGIKFHRIIRDFMI 102 (456)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~G~i~~~L~~~~~P~t~~nf~~l~~~~--~-y~~~~f~rvi~df~i 102 (456)
..++|.+++++.+..... |+|+.+|-.+..|+|.+||..||++. | |+|+.|||+||.||+
T Consensus 133 a~~~pqv~~~ikig~~~~-----------------Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmc 195 (298)
T KOG0111|consen 133 AMENPQVYHDIKIGEDRA-----------------GRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMC 195 (298)
T ss_pred hhhChHhhhheeeccccc-----------------ceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhc
Confidence 446678888998888888 99999999999999999999999864 4 999999999999999
Q ss_pred Ee------eccCCCccccchhhhhhhccccccCCcee-----eecCCeEEEEeecCCCCceeeeEecCeEEeee
Q psy1031 103 QA------MGVGGASNVNQLQDVIQNLHCWCNENLMV-----LNLEKCKVMSFYTNKHPILINYNINNVQLERV 165 (456)
Q Consensus 103 q~------~g~g~~s~~~~Lq~~l~~l~~W~~~~~L~-----~n~~Kt~~~~f~~~~~~~~~~~~i~g~~I~~~ 165 (456)
|| .|+|+.|+|++.+++-+-......-.-|+ -|++-+++.+.+.+...++....+.|..++..
T Consensus 196 qggdftn~ngtggksiygkkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgkhvvfghv~eg~ 269 (298)
T KOG0111|consen 196 QGGDFTNGNGTGGKSIYGKKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGKHVVFGHVVEGM 269 (298)
T ss_pred cCCccccCCCCCCcccccccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCceeEEeeecchH
Confidence 99 49999999999999988776665544444 46777888877777766666666666665543
No 51
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=27.14 E-value=1.5e+02 Score=31.45 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=40.9
Q ss_pred cCcceEEeeccCCCCCcceEEEEeCCCC---CCCCCccEEEEEEcCHHHHHHhhcCC
Q psy1031 381 TGAGILSMANSGPDTNGSQFFITLAPTQ---WLDGKHAIFGRIYSGMSVVKRIGLVE 434 (456)
Q Consensus 381 ~~~G~l~ma~~~~~~~~sqFfI~~~~~~---~ld~~~~vfG~V~~G~~~l~~i~~~~ 434 (456)
..++.|.+.-+|-|...+.+.|+-.+-. -+..+--|||+|+.|..+|+++...+
T Consensus 110 y~r~DV~lg~~G~d~~~thLIfsk~~h~~~YG~p~~~gvigrvi~Gk~vl~~L~~~D 166 (503)
T TIGR03268 110 YERWDVILSLSGFDPDETHIIFSKKRHAAEYGVPDENGIIARVVGGKRVIDRLSDGD 166 (503)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCCCCEEEEEccchhhHhhccCCC
Confidence 3588899998887777777777766533 12235789999999999999997644
No 52
>PRK00969 hypothetical protein; Provisional
Probab=25.92 E-value=1.6e+02 Score=31.15 Aligned_cols=53 Identities=15% Similarity=0.197 Sum_probs=38.5
Q ss_pred cCcceEEeeccCCCCCcceEEEEeCCCC---CCCCCccEEEEEEcCHHHHHHhhcCC
Q psy1031 381 TGAGILSMANSGPDTNGSQFFITLAPTQ---WLDGKHAIFGRIYSGMSVVKRIGLVE 434 (456)
Q Consensus 381 ~~~G~l~ma~~~~~~~~sqFfI~~~~~~---~ld~~~~vfG~V~~G~~~l~~i~~~~ 434 (456)
..++.|.+.-+|-|...+.+.|+-.+-. -+... -|||+|+.|..+|+++...+
T Consensus 114 y~r~DV~lg~~G~dp~~thLIfsk~~h~a~YG~p~~-gv~grVi~Gk~vl~~L~~~D 169 (508)
T PRK00969 114 YERWDVVLSLSGFDPSETHLIFSKRDHSADYGAPND-GVIGRVVGGKRVLDRLTDGD 169 (508)
T ss_pred eecccEEEEccCCCCCCceEEEEecchhhhhCCCCC-CceEEEccchhhHhhccCCC
Confidence 3578888888886766677777665522 12222 89999999999999998644
No 53
>PF04126 Cyclophil_like: Cyclophilin-like; InterPro: IPR007256 Proteins of this family have no known function.; PDB: 2KA0_A 1ZX8_C 2NNZ_A.
Probab=23.32 E-value=93 Score=26.29 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=27.4
Q ss_pred CcceEEeeccCCCCCcceEEEEeCCCC-------CCCCCccEEEEEEcCHHHHHHhhc
Q psy1031 382 GAGILSMANSGPDTNGSQFFITLAPTQ-------WLDGKHAIFGRIYSGMSVVKRIGL 432 (456)
Q Consensus 382 ~~G~l~ma~~~~~~~~sqFfI~~~~~~-------~ld~~~~vfG~V~~G~~~l~~i~~ 432 (456)
..|.|+.-..+.+ |-|-.++.| .+-....++|+|++|.+.+.++..
T Consensus 61 ~~GDi~Yw~pg~~-----l~ifyg~~p~S~~~~~~~~~~v~~lG~i~~~~~~l~~~~~ 113 (120)
T PF04126_consen 61 EAGDIAYWPPGGA-----LAIFYGDTPISEGGEIRPASPVNVLGRIVSDLENLKEVKG 113 (120)
T ss_dssp -TTEEEEECCCTE-----EEEESS--TT--TTSB--SSSEEEEEEEEC-GGGGGG--T
T ss_pred cCceEEEeCCCCE-----EEEEecCcccccccccccCCcceEEEEECCCHHHHhhCCC
Confidence 3677776654333 555556553 566789999999999999888854
No 54
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=20.09 E-value=77 Score=27.91 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=12.4
Q ss_pred eEEEEEecCCCCchhhhhHHH
Q psy1031 62 EIIVELYWKHAPNTCRNFAEL 82 (456)
Q Consensus 62 ~i~~~L~~~~~P~t~~nf~~l 82 (456)
..+.+|..+++|+||+-|.+.
T Consensus 9 ~~~A~l~~d~AP~Tcaa~~~~ 29 (147)
T PF12903_consen 9 SFTARLLDDKAPKTCAAFWEA 29 (147)
T ss_dssp EEEEEE-TTTSHHHHHHHHHH
T ss_pred EEEEEEcccCChHHHHHHHHh
Confidence 445666666666666666654
Done!