RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1031
(456 letters)
>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1;
isomerase-immunosuppressant complex, immunosuppressant;
HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB:
1xwn_A
Length = 166
Score = 205 bits (524), Expect = 6e-65
Identities = 74/102 (72%), Positives = 88/102 (86%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64 GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVR 453
GKH IFGR+ G+ +V R+G+VET+ DRPVDDVKI+K +
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS 165
Score = 96.9 bits (242), Expect = 6e-24
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 6/64 (9%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
++ +MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ G
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 108 GGAS 111
GGAS
Sbjct: 73 GGAS 76
>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel,
disorder-order transition, HOOK-like, mRNA processing,
mRNA splicing, rotamase; NMR {Homo sapiens}
Length = 203
Score = 206 bits (526), Expect = 8e-65
Identities = 74/101 (73%), Positives = 88/101 (87%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64 GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
GKH IFGR+ G+ +V R+G+VET+ DRPVDDVKI+K +
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYP 164
Score = 97.8 bits (244), Expect = 8e-24
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 6/64 (9%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
++ +MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ G
Sbjct: 13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGR 72
Query: 108 GGAS 111
GGAS
Sbjct: 73 GGAS 76
>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain,
structura genomics, structural genomics consortium, SGC,
unknown FUNC; 1.80A {Plasmodium falciparum} SCOP:
b.62.1.1
Length = 160
Score = 202 bits (517), Expect = 5e-64
Identities = 52/103 (50%), Positives = 68/103 (66%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GDP+G G GG SI+G F DE + L H+ ++SMAN GP+TNGSQFFIT P WLD
Sbjct: 58 TGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLD 117
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHVRN 454
KH +FG++ G +V I V TDK D+P++D+KIL + N
Sbjct: 118 FKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKINN 160
Score = 94.2 bits (235), Expect = 4e-23
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
S + + MG+I + L++K T +NF+ YYN FHR+I+ FM+Q G
Sbjct: 7 SAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGDGT 66
Query: 108 GGAS 111
GG S
Sbjct: 67 GGES 70
>2b71_A Cyclophilin-like protein; structural genomics, structural genomics
consortium, SGC, isomerase; 2.50A {Plasmodium yoelii}
SCOP: b.62.1.1
Length = 196
Score = 200 bits (510), Expect = 2e-62
Identities = 62/101 (61%), Positives = 79/101 (78%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTG+GG SIYG+ F DEI++ELKHTGAGILSM+N+GP+TN SQFFITLAP LD
Sbjct: 91 GGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLD 150
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
GKH IF R+ M+ ++ I V+T ++P+ D+KIL+T
Sbjct: 151 GKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTST 191
Score = 95.1 bits (237), Expect = 5e-23
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA-----MGVGGAS 111
N+G+ VELYW H+P TC NF LC +Y+ FHR+I +F+IQ G GG S
Sbjct: 46 NLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQGGDPTGTGKGGKS 103
>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans
isomerization, protein-folding, peptidylprolyl ISO
structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1
Length = 176
Score = 198 bits (506), Expect = 3e-62
Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 1/103 (0%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GDPTGTG GG SI+G F DE H L+H LSMAN+G +TNGSQFFIT+ PT WLD
Sbjct: 74 TGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLD 133
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHVR 453
KH +FGR+ GM VV+RI V+ + K D+P +DV I+ V+
Sbjct: 134 NKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 176
Score = 94.6 bits (236), Expect = 4e-23
Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
+MG+I +L+ P T NF R YYNG FHRII+ FMIQ G+GG S
Sbjct: 29 SMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGES 86
>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix,
disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1
PDB: 1xyh_A 2oju_A*
Length = 161
Score = 193 bits (493), Expect = 2e-60
Identities = 49/102 (48%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GDPTGTGRGG+SI+GK F DE E LKH G++SMAN+GP+TNGSQFFIT LD
Sbjct: 53 TGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLD 112
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHV 452
K+ +FG++ G+ + + + + K RP++DV I +
Sbjct: 113 MKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154
Score = 93.8 bits (234), Expect = 6e-23
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
S+ H ++G+I +E++ + P TC NF LC NYYNG FHR I+ FM+Q G
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQTGDPTGTGR 61
Query: 108 GGAS 111
GG S
Sbjct: 62 GGNS 65
>2hq6_A Serologically defined colon cancer antigen 10; protein folding,
peptidyl-prolyl CIS-trans isomerase, struct genomics;
1.75A {Homo sapiens}
Length = 185
Score = 194 bits (494), Expect = 3e-60
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTG GG SIYG F DE H L+ G+++MAN+G NGSQFF TL L+
Sbjct: 77 GGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELN 136
Query: 412 GKHAIFGRIYS-GMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
KH IFG++ + + R+ V+ D ++RP + KI V
Sbjct: 137 NKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKIKSCEV 178
Score = 95.4 bits (238), Expect = 3e-23
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA-----MGV 107
++ G+I +EL+ K AP CRNF +LC YY+ FHR++ F++Q G
Sbjct: 26 KVLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGS 85
Query: 108 GGAS 111
GG S
Sbjct: 86 GGES 89
>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans
isomerization, peptidylprolyl isomerase, protein-
folding, structural genomics consortium; 1.65A {Homo
sapiens} SCOP: b.62.1.1
Length = 197
Score = 192 bits (491), Expect = 1e-59
Identities = 57/102 (55%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTG GG S +GK F DE L HTG GILSMANSGP++N SQFFIT +LD
Sbjct: 72 GGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLD 131
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHV 452
KH IFGR+ G V+ + VE+D K DRP ++++I T V
Sbjct: 132 KKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 173
Score = 94.3 bits (235), Expect = 1e-22
Identities = 26/58 (44%), Positives = 36/58 (62%), Gaps = 5/58 (8%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGVGGAS 111
N G++ +EL+ P TC NF LC+++YY+G FHR IR+F+IQ G GG S
Sbjct: 27 NKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGES 84
>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum
cyclophilin isomerase, structural genomics; 2.01A
{Cryptosporidium parvum iowa II} PDB: 2qer_A
Length = 185
Score = 192 bits (489), Expect = 2e-59
Identities = 49/105 (46%), Positives = 70/105 (66%), Gaps = 4/105 (3%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSG----PDTNGSQFFITLAPT 407
GGDPTGTG+GG SIYG+ F DEI+ ELK+ GILSMA+ G P+TNGSQFFIT +
Sbjct: 69 GGDPTGTGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSSL 128
Query: 408 QWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
L+G++ IFG++ G + + +DK+ +P+D++ I +
Sbjct: 129 PQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVI 173
Score = 94.3 bits (235), Expect = 8e-23
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 50 IILRSLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA---- 104
+ + + N G++ EL+ P C+NF L YY FH+ I+ F+IQ
Sbjct: 14 LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGYYKNTIFHKNIKGFIIQGGDPT 73
Query: 105 -MGVGGAS 111
G GG S
Sbjct: 74 GTGKGGES 81
>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;
isomerase-immunosuppressant complex, immunosuppressant,
cyclophilin, structural G structural genomics
consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}
Length = 201
Score = 187 bits (478), Expect = 1e-57
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 7/109 (6%)
Query: 351 AGGDPTGTGRGGSSIY-------GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFIT 403
P+ S G F DE L H G G+LSMAN G +N S+FFIT
Sbjct: 63 ELRQPSKKKEVQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFIT 122
Query: 404 LAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
+ L+ KH IFGR+ G+ V+++ +ETDK D+P+ K+ + V
Sbjct: 123 FKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIV 171
Score = 94.3 bits (235), Expect = 1e-22
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
G + +EL+ AP C +F LC Y++ FHR IR+FMIQ
Sbjct: 14 TQGSLNIELHADMAPRACDSFLRLCAVKYFDDTIFHRCIRNFMIQ 58
>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009,
rotamase, structural proteomics in europe, spine; 2.6A
{Mycobacterium tuberculosis} SCOP: b.62.1.1
Length = 191
Score = 184 bits (469), Expect = 2e-56
Identities = 52/103 (50%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTGRGG G FADE H EL+ +L+MAN+GP TNGSQFFIT+ T L+
Sbjct: 91 GGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN 147
Query: 412 GKHAIFGRIYS--GMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
+H IFG + VV+ I TD NDRP D V I +
Sbjct: 148 RRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 190
Score = 87.5 bits (217), Expect = 3e-20
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Query: 56 VFH-NMGEIIVELYWKHAPNTCRNFAELCRRN---------------YYNGIKFHRIIRD 99
H N G+I + L+ HAP T NF L + +Y+G FHR+I+
Sbjct: 27 TLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQG 86
Query: 100 FMIQ 103
FMIQ
Sbjct: 87 FMIQ 90
>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural
genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Length = 232
Score = 176 bits (448), Expect = 8e-53
Identities = 42/118 (35%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 352 GGDPTGTGRGG--SSIYGKTFADEIHEELKHTGAGILSMANSGPD--------------T 395
GGDPTGTGRGG ++ GK F E H LK G++ +AN G T
Sbjct: 74 GGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGT 133
Query: 396 NGSQFFITLAPTQWLDGKHAIFGRIYS-GMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
NG+QFFITLA L+ + +FG++ + + + +E K DRP+ I V
Sbjct: 134 NGNQFFITLARADVLNNAYTLFGKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDV 191
Score = 93.7 bits (233), Expect = 4e-22
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ-----AMGV 107
+V H ++G++ VEL+ + P CRNF +LC YY FHR+++DF++Q G
Sbjct: 23 KVVLHTSLGDLDVELWARECPLACRNFVQLCLEGYYVNTIFHRVVKDFIVQGGDPTGTGR 82
Query: 108 GGAS 111
GGA
Sbjct: 83 GGAD 86
>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA
splicing, alternative splicing, nucleus, rotamase,
cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A*
2gw2_A
Length = 179
Score = 163 bits (415), Expect = 1e-48
Identities = 51/97 (52%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD + G GRGG SIYG F DE +KH +LSMAN G DTNGSQFFIT PT L
Sbjct: 78 GGDFSEGNGRGGESIYGGFFEDE-SFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHL 136
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DG H +FG++ SG VV+ I +TD +P +V+I
Sbjct: 137 DGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRI 173
Score = 57.9 bits (141), Expect = 3e-10
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 61 GEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA----- 104
G ++ EL+ P TC NF LC + +Y FHR+++DFM+Q
Sbjct: 24 GRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSE 83
Query: 105 -MGVGGAS 111
G GG S
Sbjct: 84 GNGRGGES 91
>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane,
repeat, rotamase, peptidylprolyl isomerase, structural
genomics; 2.00A {Homo sapiens}
Length = 192
Score = 162 bits (412), Expect = 5e-48
Identities = 50/97 (51%), Positives = 63/97 (64%), Gaps = 2/97 (2%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD + G G+GG SIYG F DE + LKH A +LSMAN G TNGSQFFIT P L
Sbjct: 88 GGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHL 146
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DG H +FG + SG V+++I ++TD RP DV++
Sbjct: 147 DGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRV 183
Score = 58.4 bits (142), Expect = 3e-10
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQ 103
+G I+ +L+ P TC+NF LC ++ Y G FHR++++FMIQ
Sbjct: 33 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQ 87
>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP:
b.62.1.1 PDB: 1a33_A 1c5f_A*
Length = 177
Score = 161 bits (410), Expect = 6e-48
Identities = 48/97 (49%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G G GG SIYG F DE +KH ++SMAN GP+TNGSQFFIT P L
Sbjct: 75 GGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHL 133
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
+ H +FG++ SG VV +I ++T+ +RP+ DV I
Sbjct: 134 NNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170
Score = 58.3 bits (142), Expect = 3e-10
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 17/69 (24%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA---- 104
G I++ELY AP TC NF LC + +Y G FHR+I++FMIQ
Sbjct: 20 AGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFT 79
Query: 105 --MGVGGAS 111
G GG S
Sbjct: 80 KGDGTGGES 88
>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin,
peptidyl-prolyl-CIS/trans isomerase, spliceosome,
U4/U6-60K protein, WD protein; 2.00A {Homo sapiens}
SCOP: b.62.1.1 PDB: 1qoi_A
Length = 177
Score = 161 bits (410), Expect = 7e-48
Identities = 50/97 (51%), Positives = 65/97 (67%), Gaps = 2/97 (2%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD G G G +SIY FADE + +L+H+ G+LSMANSGP TNG QFFIT + WL
Sbjct: 76 GGDFVNGDGTGVASIYRGPFADE-NFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWL 134
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG+I G+ V+++I V T N++P V I
Sbjct: 135 DGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVI 171
Score = 55.6 bits (135), Expect = 2e-09
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC--------RRNYYNGIKFHRIIRDFMIQA------M 105
+G + +EL+ P T NF + C Y G FHR+I+DFMIQ
Sbjct: 24 VGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGD 83
Query: 106 GVGGAS 111
G G AS
Sbjct: 84 GTGVAS 89
>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin,
endoplasmic reticulum, glycoprot isomerase, rotamase;
1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A*
2rmc_A* 1h0p_A 1xo7_A 1xq7_A*
Length = 188
Score = 159 bits (404), Expect = 8e-47
Identities = 55/97 (56%), Positives = 69/97 (71%), Gaps = 2/97 (2%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G G GG SIYG+ F DE + +LKH G G +SMAN+G DTNGSQFFIT T WL
Sbjct: 76 GGDFTRGDGTGGKSIYGERFPDE-NFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWL 134
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG++ GM VV+++ +TD D+P+ DV I
Sbjct: 135 DGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVII 171
Score = 54.5 bits (132), Expect = 6e-09
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
+G +I L+ K P T NF L Y KFHR+I+DFMIQ G GG
Sbjct: 29 VGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGK 88
Query: 111 S 111
S
Sbjct: 89 S 89
>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, cyclophilin-cyclosporin complex,
immunosuppressant, cyclophilin; HET: BMT; 2.1A
{Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*
Length = 170
Score = 153 bits (388), Expect = 1e-44
Identities = 49/97 (50%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G G GG SIYG++F DE + +KH G+LSMAN+GP+TN SQFFITL P WL
Sbjct: 70 GGDITNGNGSGGESIYGRSFTDE-NFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWL 128
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG++ GM+VV+ + + V I
Sbjct: 129 DGKHVVFGKVIEGMNVVREMEKEGAK-SGYVKRSVVI 164
Score = 53.3 bits (129), Expect = 1e-08
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---------RRNYYNGIKFHRIIRDFMIQ 103
G II EL+ P TC NF LC + +Y FHRII FM Q
Sbjct: 17 AGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQ 69
>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin, isomerase, S
genomics, structural genomics consortium; HET: BMT;
1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*
Length = 186
Score = 152 bits (387), Expect = 2e-44
Identities = 51/97 (52%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G G GG SIYG F DE + H +LSMAN+GP+TNGSQFFIT P WL
Sbjct: 87 GGDFTRGDGTGGESIYGSKFRDE-NFVYTHDAPFLLSMANAGPNTNGSQFFITTVPCPWL 145
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG++ GM VVK I + N +P V I
Sbjct: 146 DGKHVVFGKVLEGMEVVKSIEKCGSQ-NGKPTKSVCI 181
Score = 56.0 bits (136), Expect = 2e-09
Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 10/54 (18%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC----------RRNYYNGIKFHRIIRDFMIQ 103
G I +EL+ P T NF LC + Y G FHRII FMIQ
Sbjct: 33 AGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQ 86
>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A
{Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A
1e8k_A 1dyw_A 2igw_A 2hqj_A
Length = 173
Score = 152 bits (386), Expect = 2e-44
Identities = 52/97 (53%), Positives = 67/97 (69%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G G GG SIYG+ F DE + + KHTG G+LSMAN+GP+TNGSQFF+ T+WL
Sbjct: 71 GGDFTRGNGTGGESIYGEKFPDE-NFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWL 129
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FGR+ G+ VVK + + + +PV D I
Sbjct: 130 DGKHVVFGRVVEGLDVVKAVESNGSQ-SGKPVKDCMI 165
Score = 55.6 bits (135), Expect = 2e-09
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 16/68 (23%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC----------RRNYYNGIKFHRIIRDFMIQA----- 104
G I++ELY P T NF LC + ++ G KFHRII +FMIQ
Sbjct: 17 SGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTR 76
Query: 105 -MGVGGAS 111
G GG S
Sbjct: 77 GNGTGGES 84
>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa,
KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A*
3bt8_A
Length = 172
Score = 151 bits (384), Expect = 4e-44
Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G GG SIYG+ FADE + +KH G LSMAN+GP+TNGSQFFIT APT WL
Sbjct: 72 GGDFTNFDGTGGKSIYGEKFADE-NLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPWL 129
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DG+H +FG++ GM VV RI +T+ +DRPV VKI
Sbjct: 130 DGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKI 166
Score = 54.9 bits (133), Expect = 4e-09
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQA------MGVGGA 110
+G I + L+ K AP T NF +LC Y FHR+I++FMIQ G GG
Sbjct: 25 LGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQGGDFTNFDGTGGK 84
Query: 111 S 111
S
Sbjct: 85 S 85
>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase,
RNA-binding, cyclosporin, cyclophilin, beta-barrel;
1.50A {Schistosoma mansoni} PDB: 2ck1_A
Length = 172
Score = 150 bits (381), Expect = 1e-43
Identities = 51/97 (52%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD G G GG SIYG+ F DE + +L+H G G+LSMANSGP+TNGSQFFI WL
Sbjct: 71 GGDFVKGDGTGGKSIYGRKFDDE-NFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWL 129
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FGR+ G +VVK++ V + K+ + + V I
Sbjct: 130 DGKHVVFGRVVDGQNVVKKMESVGS-KSGKVKEPVII 165
Score = 54.1 bits (131), Expect = 7e-09
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
G I++EL P T NF LC Y+ FHR+I FM Q G GG
Sbjct: 24 AGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGK 83
Query: 111 S 111
S
Sbjct: 84 S 84
>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A
{Mimivirus}
Length = 234
Score = 152 bits (385), Expect = 1e-43
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 13/109 (11%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHE--ELKHTGAGILSMA----NSGPDTNGSQFFITL 404
GD G ++Y + H G+LS+ SG S F ITL
Sbjct: 92 SGDIYNSNGSSAGTVYCDEPIPPVFGDYFYPHESKGLLSLVPYTDESGNRYYDSTFMITL 151
Query: 405 ------APTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
LD + G++Y G+ V+ +I + R I
Sbjct: 152 DDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSI 200
Score = 54.4 bits (131), Expect = 1e-08
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 20/64 (31%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC--------------------RRNYYNGIKFHRIIRD 99
+G + ++L+ P NF +L Y G KFH ++ +
Sbjct: 28 IGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLHN 87
Query: 100 FMIQ 103
I
Sbjct: 88 NYIV 91
>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization,
structural genomics consortium, SGC, alternative
splicing, mRNA processing; 1.61A {Homo sapiens} SCOP:
b.62.1.1 PDB: 3uch_A 1zmf_A
Length = 173
Score = 149 bits (380), Expect = 2e-43
Identities = 53/97 (54%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G GG SIYGK F DE + LKHTG G+LSMANSGP+TNGSQFF+T T WL
Sbjct: 72 GGDFTNHNGTGGKSIYGKKFDDE-NFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWL 130
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG + G+ V+++I + K+ +P V I
Sbjct: 131 DGKHVVFGEVTEGLDVLRQIEAQGS-KDGKPKQKVII 166
Score = 53.7 bits (130), Expect = 9e-09
Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
G I + L P T NF LC + G FHRII FM Q G GG
Sbjct: 25 AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 84
Query: 111 S 111
S
Sbjct: 85 S 85
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase,
isomerase-immunosuppressant compl; HET: BMT; 1.47A
{Moniliophthora perniciosa} PDB: 3o7t_A
Length = 164
Score = 149 bits (378), Expect = 2e-43
Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G GG SIYG+ FADE + ++KHT G+LSMAN+G +TNGSQFFIT PT WL
Sbjct: 63 GGDFTRHNGTGGKSIYGEKFADE-NFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSWL 121
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG + G+ +V+++ + + + +KI
Sbjct: 122 DGKHVVFGEVIEGLDIVRKVEGKGSA-SGKTNATIKI 157
Score = 52.9 bits (128), Expect = 1e-08
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
G I+ +LY + P T +NF EL + Y FHR+I FM+Q G GG
Sbjct: 16 EGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGGDFTRHNGTGGK 75
Query: 111 S 111
S
Sbjct: 76 S 76
>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant
complex, immunosuppressant, cyclophilin D; HET: BMT MLE
CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A*
3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A*
3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A*
2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...
Length = 165
Score = 149 bits (378), Expect = 2e-43
Identities = 51/97 (52%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GD T G GG SIYG F DE + LKH G G+LSMAN+GP+TNGSQFFI T WL
Sbjct: 64 AGDFTNHNGTGGKSIYGSRFPDE-NFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 122
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG + GM VVK+I + K+ R + I
Sbjct: 123 DGKHVVFGHVIEGMDVVKKIESFGS-KSGRTSKKIVI 158
Score = 53.3 bits (129), Expect = 1e-08
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
+G +++EL P T NF LC Y G FHR+I FM QA G GG
Sbjct: 17 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 76
Query: 111 S 111
S
Sbjct: 77 S 77
>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW,
decode, cytoplasm, rotamase, structural genomics; HET:
PG5; 1.95A {Encephalitozoon cuniculi}
Length = 193
Score = 149 bits (378), Expect = 4e-43
Identities = 52/98 (53%), Positives = 62/98 (63%), Gaps = 3/98 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G GG SIYG+ F DE + ELKHT GILSMAN G TNGSQFFITL TQWL
Sbjct: 88 GGDYTAHNGTGGRSIYGEKFPDE-NFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWL 146
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDK-NDRPVDDVKI 447
D KH +FG + GM VV +I ++ + ++I
Sbjct: 147 DEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEI 184
Score = 53.4 bits (129), Expect = 2e-08
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQ 103
+G I+++L P T +NF LC R Y G FHRII FM+Q
Sbjct: 41 LGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQ 87
>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic,
inhibito isomerase-isomerase inhibitor complex; HET:
EA4; 2.14A {Homo sapiens}
Length = 184
Score = 148 bits (377), Expect = 5e-43
Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G GG SIYG+ F DE + LKHTG GILSMAN+GP+TNGSQFFI A T+WL
Sbjct: 83 GGDFTRHNGTGGKSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWL 141
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG++ GM++V+ + + +N + + I
Sbjct: 142 DGKHVVFGKVKEGMNIVEAMERFGS-RNGKTSKKITI 177
Score = 53.0 bits (128), Expect = 2e-08
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQA------MGVGGA 110
+G + EL+ P T NF L Y G FHRII FM Q G GG
Sbjct: 36 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGK 95
Query: 111 S 111
S
Sbjct: 96 S 96
>1z81_A Cyclophilin; structural genomics, structural genomics consortium,
SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP:
b.62.1.1
Length = 229
Score = 149 bits (377), Expect = 2e-42
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD G G SIYG+ F DE + ++KH G+LSMANSGP+TNG QFFIT +WL
Sbjct: 125 GGDFINHNGSGSLSIYGEKFDDE-NFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWL 183
Query: 411 DGKHAIFGRIYS--GMSVVKRIGLVETD-KNDRPVDDVKI 447
DGK+ +FGRI + ++K+I V +P + +
Sbjct: 184 DGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINV 223
Score = 56.6 bits (137), Expect = 2e-09
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 8/52 (15%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC--------RRNYYNGIKFHRIIRDFMIQ 103
+G+ EL+ P T NF + C Y FHR+I++FMIQ
Sbjct: 73 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQ 124
>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp
F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus}
SCOP: b.62.1.1
Length = 172
Score = 145 bits (368), Expect = 8e-42
Identities = 54/100 (54%), Positives = 62/100 (62%), Gaps = 5/100 (5%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD T G G GG SIYG FADE + KH GILSMAN+GP+TNGSQFFIT A T WL
Sbjct: 68 GGDFTRGNGTGGRSIYGDKFADE-NFSRKHDKKGILSMANAGPNTNGSQFFITTAVTSWL 126
Query: 411 DGKHAIFGRI--YSGMSVVKRIGLVETDK-NDRPVDDVKI 447
DGKH +FG + SVVK I + + + R KI
Sbjct: 127 DGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKI 166
Score = 53.0 bits (128), Expect = 2e-08
Identities = 25/61 (40%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQA------MGVGGA 110
+G I+ L+ K P T +NF ELC Y FHRII +FMIQ G GG
Sbjct: 21 VGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGR 80
Query: 111 S 111
S
Sbjct: 81 S 81
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 150 bits (380), Expect = 2e-41
Identities = 48/97 (49%), Positives = 60/97 (61%), Gaps = 3/97 (3%)
Query: 352 GGDPT-GTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL 410
GGD + G GG SIYG+ F DE + KH G+LSMAN+G +TNGSQFFIT PT L
Sbjct: 84 GGDFSNQNGTGGESIYGEKFEDE-NFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHL 142
Query: 411 DGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
DGKH +FG++ GM V K + VE ++P I
Sbjct: 143 DGKHVVFGQVIKGMGVAKILENVEVK-GEKPAKLCVI 178
Score = 59.7 bits (145), Expect = 6e-10
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 61 GEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA----- 104
G I++EL+ P T NF LC + ++ G FHRII+ FMIQ
Sbjct: 30 GRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSN 89
Query: 105 -MGVGGAS 111
G GG S
Sbjct: 90 QNGTGGES 97
>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics
center for infectious disease; 1.65A {Burkholderia
pseudomallei} PDB: 3t1u_A*
Length = 167
Score = 111 bits (281), Expect = 2e-29
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMA-NSGPDTNGSQFFITLAPTQWL 410
GG + + A+E + LK+ ++MA + P + +QFFI + ++L
Sbjct: 56 GGGFEPGLKQKPT--DAPIANEANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFL 112
Query: 411 DGK--------HAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILK 449
+ +A+FG++ G +V +I V+T D P DDV I K
Sbjct: 113 NHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEK 163
Score = 76.8 bits (190), Expect = 7e-17
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
N G I +EL AP T NF ++ +Y+G FHR+I FMIQ
Sbjct: 11 NHGVIKLELDEAKAPKTVENFLNYVKKGHYDGTIFHRVINGFMIQ 55
>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex;
HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB:
2nul_A 2rs4_A
Length = 164
Score = 110 bits (278), Expect = 5e-29
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 16/114 (14%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMA-NSGPDTNGSQFFITLAPTQWL 410
GG + ++ + +E + LK+T G L+MA P + +QFFI + +L
Sbjct: 52 GGGFEPGMKQKAT--KEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDFL 108
Query: 411 DGK--------HAIFGRIYSGMSVVKRIGLVETDKN----DRPVDDVKILKTHV 452
+ + +F + GM V +I V T ++ D P +DV I V
Sbjct: 109 NFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
Score = 77.2 bits (191), Expect = 6e-17
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
N G+I+++ + AP T +NF + CR +YN FHR+I FMIQ
Sbjct: 7 NHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ 51
>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex;
HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB:
1j2a_A* 1vai_A* 1clh_A
Length = 166
Score = 106 bits (268), Expect = 1e-27
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 13/111 (11%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMA-NSGPDTNGSQFFITLAPTQWL 410
GG T + +E L++T G ++MA + D+ SQFFI +A +L
Sbjct: 57 GGGFTEQMQQKKP--NPPIKNEADNGLRNT-RGTIAMARTADKDSATSQFFINVADNAFL 113
Query: 411 DG-----KHAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILKTHV 452
D +A+FG++ GM V +I V T + P V IL V
Sbjct: 114 DHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATV 164
Score = 75.7 bits (187), Expect = 2e-16
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
+ G I +EL + AP + +NF + +YN FHR+I FMIQ
Sbjct: 12 SAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ 56
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin,
peptidyl prolyl isomerase, ppiase, TLP,; 2.39A
{Arabidopsis thaliana}
Length = 369
Score = 91.2 bits (226), Expect = 2e-20
Identities = 24/132 (18%), Positives = 45/132 (34%), Gaps = 34/132 (25%)
Query: 352 GGDPTGTGRGGSS---------------------IYGKTFAD----EIHEELKHTGAGIL 386
GDP G G YG T + + + G +
Sbjct: 230 TGDPEGPAEGFIDPSTEKTRTVPLEIMVTGEKTPFYGSTLEELGLYKAQVVIPFNAFGTM 289
Query: 387 SMANSG--PDTNGSQFFI-------TLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDK 437
+MA D+ SQ F T + + LDG++A+FG + + + + + +
Sbjct: 290 AMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKVGDVIE 349
Query: 438 NDRPVDDVKILK 449
+ + V ++ L
Sbjct: 350 SIQVVSGLENLA 361
Score = 72.4 bits (177), Expect = 5e-14
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 39 CRRTVQFTVVEIILRSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIR 98
R +V V ++ + L +AP T NF +L R++Y+G++ R
Sbjct: 169 GRASVDMKVKIKDNPNI---EDCVFRIVLDGYNAPVTAGNFVDLVERHFYDGMEIQRSD- 224
Query: 99 DFMIQ 103
F++Q
Sbjct: 225 GFVVQ 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 1e-05
Identities = 41/267 (15%), Positives = 90/267 (33%), Gaps = 60/267 (22%)
Query: 70 KHAPNTCRNFAELCRRN--------YYNGIKFHRIIRDF-----------MIQAMGVGGA 110
P AE R + N K II M + V
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF-P 382
Query: 111 SNVNQLQDVIQNLHCWCN---ENLMVLNLEKCKVMSFYTNKHPILINYNINNVQLE---R 164
+ + ++ + W + ++MV+ + K S K P +I ++ LE +
Sbjct: 383 PSAHIPTILLSLI--WFDVIKSDVMVV-VNKLHKYSL-VEKQPKESTISIPSIYLELKVK 438
Query: 165 VNNIKDLGVTF--QYNLKFNLHYSEIKSKALRMLGFLY--RHTQDFKHPK---TLTNLY- 216
+ N L + YN+ ++ L + + H ++ +HP+ ++
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 217 -YTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMAANKI 275
+ ++ + + ST W+ S+ + + +K + +D Y+ + +
Sbjct: 499 DFRFLEQKIRHDSTAWNAS--------GSILNTLQQLKFYKPYICDNDPKYERL-----V 545
Query: 276 TSLKNRRDMQDLVFIYKVLHNLIYSPE 302
++ + F+ K+ NLI S
Sbjct: 546 NAILD--------FLPKIEENLICSKY 564
Score = 44.8 bits (105), Expect = 6e-05
Identities = 40/324 (12%), Positives = 106/324 (32%), Gaps = 71/324 (21%)
Query: 53 RSLVFHNMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKF-HRIIR-DFMIQAMGVGGA 110
+ ++ + K + ++ L + + I + + +
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 111 SNVNQ-LQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILIN-------YNINNVQL 162
V + +++V++ + + + + + Y + L N YN++ +L
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RL 134
Query: 163 ERVNNIKD-LGVTFQYNLKFN----LHYSEIKSKALRMLGF----LYRHT-QDFK-HPKT 211
+ ++ L L+ + +LG + +K K
Sbjct: 135 QPYLKLRQAL-----LELRPAKNVLID---------GVLGSGKTWVALDVCLSYKVQCKM 180
Query: 212 LTNLYYTYVRSCLEYCSTVWSPQYETHIKSLESVQHKFLIMLAFKSFTRIDDHNYDNIMA 271
+++ +++C SP ET ++ L+ + ++ ++T DH+ + +
Sbjct: 181 DFKIFWLNLKNCN-------SP--ETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLR 226
Query: 272 ANKITS-----LKNRRDMQDLVFIYKVLHNLIYSPEILSNFNLKVPLRKTRSCDMFVLEK 326
+ I + LK++ L+ VL N + + + + FNL C + + +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLL----VLLN-VQNAKAWNAFNLS--------CKILLTTR 273
Query: 327 NKTNIGEFSPIQRMEKIGNHITSG 350
K S +H +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMT 297
Score = 39.5 bits (91), Expect = 0.003
Identities = 37/251 (14%), Positives = 79/251 (31%), Gaps = 80/251 (31%)
Query: 15 DPDLYR-------ILQD-----EDLVEKLAFSQAEICRRTVQFTVVEIILRSLVFHNMGE 62
+P YR + L+ + ++ + V V ++ SLV E
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYSLVEKQPKE 423
Query: 63 IIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQLQDVIQN 122
+ + + + N HR I V+
Sbjct: 424 STISIPSIY-------LELKVKLE--NEYALHRSI---------------VDHY----NI 455
Query: 123 LHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNINNVQL-ERVNNIKDLGVTFQYNLKF 181
+ +++L+ L++ Y H I +++ N++ ER+ + + F + +F
Sbjct: 456 PKTFDSDDLIPPYLDQ------YFYSH---IGHHLKNIEHPERMTLFRMV---FL-DFRF 502
Query: 182 NLHYSEIKSKALRMLGFLYRHTQDFKHPKTLTNL--YYTYVRSCLEYCSTVWSPQYETHI 239
++ K +R + + + TL L Y Y+ P+YE +
Sbjct: 503 ------LEQK-IRHDSTAWNASGSILN--TLQQLKFYKPYI--------CDNDPKYERLV 545
Query: 240 KSLESVQHKFL 250
++ FL
Sbjct: 546 NAIL----DFL 552
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 39.8 bits (93), Expect = 6e-04
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 394 DTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKT 450
+ T + DG IF +I ++R+ + + +D ++ L
Sbjct: 11 EVKPEVKPETHINLKVSDGSSEIFFKIKKTT-PLRRLMEAFAKRQGKEMDSLRFLYD 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.003
Identities = 40/231 (17%), Positives = 71/231 (30%), Gaps = 84/231 (36%)
Query: 10 GRSPSDPDLYRILQDEDLVEKLAF-SQAEICRRTVQFT-----VVEI-ILRSL------- 55
G+ ++ I +E F S+ + T QFT ++E L
Sbjct: 1699 GKLKTEKIFKEI--NEHS-TSYTFRSEKGLLSAT-QFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 56 ---VF--HNMGEIIVELYWKHAPNT---CR----NFAELCRRNYYNGIKFHRIIRDFMIQ 103
F H++GE Y + L + F+R + M
Sbjct: 1755 ADATFAGHSLGE-----Y------AALASLADVMSIESLVE------VVFYRGM--TMQV 1795
Query: 104 AM--GVGGASNVNQLQDVIQNLHCWCNENLMVLNLEK------CKVMSFYTNKHPIL--I 153
A+ G SN +I N + + + + + T ++ +
Sbjct: 1796 AVPRDELGRSNY----GMIA-----INPGRVAASFSQEALQYVVERVGKRTGW--LVEIV 1844
Query: 154 NYNINNVQ---------LERV----NNIKDLGVTFQYNLKFNLHYSEIKSK 191
NYN+ N Q L+ V N IK + L+ +L E++
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII-ELQKSLSLEEVEGH 1894
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL
protein transport, transport, cytoplasm, GTPase
activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
PDB: 2l1l_B
Length = 1049
Score = 28.7 bits (63), Expect = 5.4
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 73 PNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGGASN 112
+F + Y + + F +RDF++Q VGG
Sbjct: 973 SEQIASFLSALTKQYKDLVVFKGTLRDFLVQIKEVGGDPT 1012
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate
esterase family 2, hydrolase; 2.00A {Cellvibrio
japonicus}
Length = 366
Score = 28.2 bits (62), Expect = 6.1
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 322 FVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYG-----KTFADEIHE 376
F + + + +++E IG+ T G G ++ F +
Sbjct: 127 FYTDPSAKPLALPKRKRQIEFIGDSFTVGYGNTSPSRECTDEELFKTTNSQMAFGPLTAK 186
Query: 377 ELKHTGAGILSMANSG 392
A A+SG
Sbjct: 187 AF---DADYQINASSG 199
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 27.7 bits (62), Expect = 6.4
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 338 QRMEKIGNHITSGAGGDPT--G-TGRGGSSIYGK-TFADEIHEELKHTGA--GILSM 388
R++ + I + G G S GK T A+++ + L+ G + M
Sbjct: 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRS---GKTTLANQLSQTLREQGISVCVFHM 58
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC,
structural genomics, NEW YORK SGX research center for
structural genomics; HET: PGE; 2.10A {Listeria innocua}
Length = 365
Score = 28.1 bits (62), Expect = 6.9
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 350 GAGGDPTGTGRGGSSI---YGKTFADEIHEELKHTG 382
G G +G+G G I K A+++ E + G
Sbjct: 308 GGAGKSSGSGGGDCGIAFSKTKELAEKLVNEWEKLG 343
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain,
RNA polymerase II binding protein, phosphoprotein; NMR
{Saccharomyces cerevisiae} PDB: 2l0i_A*
Length = 142
Score = 27.3 bits (60), Expect = 7.0
Identities = 14/99 (14%), Positives = 33/99 (33%), Gaps = 12/99 (12%)
Query: 111 SNVNQLQDVIQNLHCWC-----NENLMVLNLEKCKVMSFYTNKHPILINYNINNV-QLER 164
+ + Q+ I + W + + ++ + + +L Y +N+V Q +
Sbjct: 13 NTLEDSQESISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAK 72
Query: 165 VNNIKDLGVTFQYNLKFNLHY------SEIKSKALRMLG 197
I +F L ++K K R++
Sbjct: 73 GQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKKLSRVVN 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 27.3 bits (61), Expect = 9.4
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 114 NQLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKHPILINYNI---NNVQLERVNNIKD 170
N + D ++ L +NL VL L + ++ N L+ N + L I D
Sbjct: 188 NHISD-LRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISD 244
Query: 171 LGVTFQYNLKFNL-HYSEIKS 190
G + N+K++L ++ S
Sbjct: 245 DGDYEKPNVKWHLPEFTNEVS 265
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 27.9 bits (62), Expect = 9.8
Identities = 5/15 (33%), Positives = 7/15 (46%)
Query: 164 RVNNIKDLGVTFQYN 178
+ +KDLGV
Sbjct: 244 EIELMKDLGVKIICG 258
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,028,354
Number of extensions: 423950
Number of successful extensions: 973
Number of sequences better than 10.0: 1
Number of HSP's gapped: 904
Number of HSP's successfully gapped: 92
Length of query: 456
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 359
Effective length of database: 3,993,456
Effective search space: 1433650704
Effective search space used: 1433650704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.9 bits)