RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1031
(456 letters)
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 127 bits (320), Expect = 1e-35
Identities = 74/101 (73%), Positives = 88/101 (87%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTGRGG+SIYGK F DE+H +LK TGAGIL+MAN+GPDTNGSQFF+TLAPTQWLD
Sbjct: 64 GGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLD 123
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
GKH IFGR+ G+ +V R+G+VET+ DRPVDDVKI+K +
Sbjct: 124 GKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYP 164
Score = 58.2 bits (140), Expect = 9e-11
Identities = 35/46 (76%), Positives = 40/46 (86%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQA 104
+MG I++ELYWKHAP TC+NFAEL RR YYNG KFHRII+DFMIQ
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQG 64
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 115 bits (290), Expect = 4e-31
Identities = 57/102 (55%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTG GG S +GK F DE L HTG GILSMANSGP++N SQFFIT +LD
Sbjct: 53 GGDPTGTGTGGESYWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAYLD 112
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHV 452
KH IFGR+ G V+ + VE+D K DRP ++++I T V
Sbjct: 113 KKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTV 154
Score = 62.4 bits (151), Expect = 4e-12
Identities = 22/45 (48%), Positives = 32/45 (71%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
N G++ +EL+ P TC NF LC+++YY+G FHR IR+F+IQ
Sbjct: 8 NKGDLNLELHCDLTPKTCENFIRLCKKHYYDGTIFHRSIRNFVIQ 52
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 105 bits (262), Expect = 2e-27
Identities = 62/99 (62%), Positives = 79/99 (79%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTG+GG SIYG+ F DEI++ELKHTGAGILSM+N+GP+TN SQFFITLAP LD
Sbjct: 69 GGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPLPHLD 128
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKT 450
GKH IF R+ M+ ++ I V+T ++P+ D+KIL+T
Sbjct: 129 GKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRT 167
Score = 42.9 bits (100), Expect = 2e-05
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
N+G+ VELYW H+P TC NF LC +Y+ FHR+I +F+IQ
Sbjct: 24 NLGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTIFHRVIPNFVIQ 68
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 103 bits (257), Expect = 8e-27
Identities = 49/102 (48%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GDPTGTGRGG+SI+GK F DE E LKH G++SMAN+GP+TNGSQFFIT LD
Sbjct: 53 TGDPTGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPHLD 112
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHV 452
K+ +FG++ G+ + + + + K RP++DV I +
Sbjct: 113 MKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI 154
Score = 51.0 bits (121), Expect = 3e-08
Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 54 SLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
S+ H ++G+I +E++ + P TC NF LC NYYNG FHR I+ FM+Q
Sbjct: 2 SVTLHTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCIFHRNIKGFMVQ 52
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 102 bits (255), Expect = 2e-26
Identities = 53/113 (46%), Positives = 67/113 (59%), Gaps = 2/113 (1%)
Query: 340 MEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQ 399
++ G G G GG SIYG FADE + +LKH G+LSMAN+GP+TNGSQ
Sbjct: 51 FHRVIPDFMLQGGDFTAGNGTGGKSIYGAKFADE-NFQLKHNKPGLLSMANAGPNTNGSQ 109
Query: 400 FFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
FFIT T WLDGKH +FG + GM+VVK I E + +P ++I K V
Sbjct: 110 FFITTVVTSWLDGKHVVFGEVIDGMNVVKAIE-AEGSGSGKPRSRIEIAKCGV 161
Score = 50.9 bits (121), Expect = 3e-08
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQ 103
+G I +L+ P T NF LC + Y G FHR+I DFM+Q
Sbjct: 15 LGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 100 bits (249), Expect = 1e-25
Identities = 55/143 (38%), Positives = 76/143 (53%), Gaps = 4/143 (2%)
Query: 307 FNLKVPL--RKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSS 364
++ VP R+ K+ + +I + G G G GG S
Sbjct: 25 YDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGES 84
Query: 365 IYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGM 424
IYG+ F DE +E KHTG G+LSMAN+GP+TNGSQFF+ T+WLDGKH +FGR+ G+
Sbjct: 85 IYGEKFPDENFKE-KHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGL 143
Query: 425 SVVKRIGLVETDKNDRPVDDVKI 447
VVK + + + +PV D I
Sbjct: 144 DVVKAVESNGSQ-SGKPVKDCMI 165
Score = 44.4 bits (104), Expect = 5e-06
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRN----------YYNGIKFHRIIRDFMIQ 103
G I++ELY P T NF LC ++ G KFHRII +FMIQ
Sbjct: 16 ASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQ 70
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 98.4 bits (244), Expect = 7e-25
Identities = 51/142 (35%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 307 FNLKVPLRKTRSCDMFVLEK-NKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSI 365
F+ P + EK +I G G G GG SI
Sbjct: 25 FSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNGSGGESI 84
Query: 366 YGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMS 425
YG++F D + +KH G+LSMAN+GP+TN SQFFITL P WLDGKH +FG++ GM+
Sbjct: 85 YGRSFTD-ENFNMKHDQPGLLSMANAGPNTNSSQFFITLVPCPWLDGKHVVFGKVIEGMN 143
Query: 426 VVKRIGLVETDKNDRPVDDVKI 447
VV+ + K+ V I
Sbjct: 144 VVREMEKEGA-KSGYVKRSVVI 164
Score = 44.1 bits (103), Expect = 7e-06
Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELC---------RRNYYNGIKFHRIIRDFMIQ 103
N G II EL+ P TC NF LC + +Y FHRII FM Q
Sbjct: 16 NAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFMCQ 69
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 95.0 bits (235), Expect = 8e-24
Identities = 51/101 (50%), Positives = 67/101 (66%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GDP+G G GG SI+G F DE + L H+ ++SMAN GP+TNGSQFFIT P WLD
Sbjct: 54 TGDPSGDGTGGESIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLD 113
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
KH +FG++ G +V I V TDK D+P++D+KIL +
Sbjct: 114 FKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI 154
Score = 48.4 bits (114), Expect = 2e-07
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 53 RSLVFH-NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQAMGVGG 109
+S + + MG+I + L++K T +NF+ YYN FHR+I+ FM+Q G
Sbjct: 2 KSAIIYTTMGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSG 59
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 95.7 bits (237), Expect = 9e-24
Identities = 62/146 (42%), Positives = 78/146 (53%), Gaps = 6/146 (4%)
Query: 307 FNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIY 366
F VP + EK G I + + G G G GG SIY
Sbjct: 29 FGNVVPKTVENFVALATGEKGYGYKG----SIFHRVIKDFMIQG-GDFTARDGTGGMSIY 83
Query: 367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSV 426
G+TF D + +LKH G G +SMAN+GPDTNGSQFFITL WLDGKH +FG++ GM+V
Sbjct: 84 GETFPD-ENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTV 142
Query: 427 VKRIGLVETDKNDRPVDDVKILKTHV 452
V I L TD +DRP+ D I+ +
Sbjct: 143 VHSIELQATDGHDRPLTDCTIVNSGK 168
Score = 46.4 bits (109), Expect = 1e-06
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQA------MGVGG 109
++G I++ L+ P T NF L + Y G FHR+I+DFMIQ G GG
Sbjct: 20 DVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGG 79
Query: 110 ASNVNQ-LQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKH 149
S + D L + + + N S +
Sbjct: 80 MSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 95.7 bits (237), Expect = 9e-24
Identities = 61/136 (44%), Positives = 77/136 (56%), Gaps = 2/136 (1%)
Query: 317 RSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHE 376
++ F+ E K GE P + ++ G G G GG SIYG+ FAD +
Sbjct: 34 KTATNFI-ELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFAD-ENF 91
Query: 377 ELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETD 436
+LKH GAG LSMAN+G DTNGSQFFIT T WLDG+H +FG+I GM VV++I E
Sbjct: 92 KLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKL 151
Query: 437 KNDRPVDDVKILKTHV 452
DRP DV I +
Sbjct: 152 PGDRPKQDVIIAASGH 167
Score = 54.1 bits (129), Expect = 3e-09
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRR---NYYNGIKFHRIIRDFMIQ 103
+G I++ L+ K P T NF EL ++ Y G KFHR+I DFMIQ
Sbjct: 20 IGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQ 66
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 93.0 bits (230), Expect = 1e-22
Identities = 49/129 (37%), Positives = 60/129 (46%), Gaps = 2/129 (1%)
Query: 319 CDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEEL 378
C T +I G G GG SIYG+ F DE
Sbjct: 51 CTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFH-Y 109
Query: 379 KHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKN 438
KH G+LSMAN+G +TNGSQFFIT PT LDGKH +FG++ GM V K + VE
Sbjct: 110 KHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVK-G 168
Query: 439 DRPVDDVKI 447
++P I
Sbjct: 169 EKPAKLCVI 177
Score = 49.1 bits (116), Expect = 2e-07
Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 18/109 (16%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQA--- 104
+G I++EL+ P T NF LC + ++ G FHRII+ FMIQ
Sbjct: 27 RVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDF 86
Query: 105 ---MGVGGASNVNQ-LQDVIQNLHCWCNENLMVLNLEKCKVMSFYTNKH 149
G GG S + +D + L + N S +
Sbjct: 87 SNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 135
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 92.2 bits (228), Expect = 1e-22
Identities = 53/121 (43%), Positives = 63/121 (52%), Gaps = 4/121 (3%)
Query: 330 NIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMA 389
GE +I + G G G GG SIYG FAD + KH GILSMA
Sbjct: 46 PAGEGYRESTFHRIIPNFMIQGGDFTRGNGTGGRSIYGDKFAD-ENFSRKHDKKGILSMA 104
Query: 390 NSGPDTNGSQFFITLAPTQWLDGKHAIFGRI--YSGMSVVKRIGLVETD-KNDRPVDDVK 446
N+GP+TNGSQFFIT A T WLDGKH +FG + SVVK I + + + R K
Sbjct: 105 NAGPNTNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPK 164
Query: 447 I 447
I
Sbjct: 165 I 165
Score = 48.3 bits (114), Expect = 2e-07
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRN---YYNGIKFHRIIRDFMIQ 103
+G I+ L+ K P T +NF ELC+R Y FHRII +FMIQ
Sbjct: 19 KVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFMIQ 66
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 91.4 bits (226), Expect = 2e-22
Identities = 47/96 (48%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
G G GG SIYG F DE + G +SMAN+GP++NGSQFF+T APT WLD
Sbjct: 67 GDFTNFDGTGGKSIYGTRFDDENLK--IKHFVGAVSMANAGPNSNGSQFFVTTAPTPWLD 124
Query: 412 GKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
G+H +FG++ GM VVK++ +T ND+P VKI
Sbjct: 125 GRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKI 160
Score = 46.4 bits (109), Expect = 9e-07
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNY---YNGIKFHRIIRDFMIQ 103
+G +++ L+ P T NF +L Y G FHR+IR+FMIQ
Sbjct: 18 PVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQ 65
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 89.9 bits (222), Expect = 9e-22
Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 1/130 (0%)
Query: 319 CDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEEL 378
C + ++ + G G G GG SIYG D+ +
Sbjct: 40 CTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGG-MFDDEEFVM 98
Query: 379 KHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKN 438
KH ++SMAN GP+TNGSQFFIT P L+ H +FG++ SG VV +I ++T+
Sbjct: 99 KHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSK 158
Query: 439 DRPVDDVKIL 448
+RP+ DV IL
Sbjct: 159 NRPLADVVIL 168
Score = 52.9 bits (126), Expect = 6e-09
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 11/55 (20%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC-----------RRNYYNGIKFHRIIRDFMIQ 103
G I++ELY AP TC NF LC + +Y G FHR+I++FMIQ
Sbjct: 17 AGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQ 71
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 89.6 bits (221), Expect = 1e-21
Identities = 51/143 (35%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 307 FNLKVPLRKTRSCDMFVLEKNKTNIGEFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSIY 366
F VP E K + ++ G G G G +SIY
Sbjct: 28 FADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIY 87
Query: 367 GKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMSV 426
FADE + G+LSMANSGP TNG QFFIT + WLDGKH +FG+I G+ V
Sbjct: 88 RGPFADENFKLRHS-APGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGLLV 146
Query: 427 VKRIGLVETDKNDRPVDDVKILK 449
+++I V T N++P V I +
Sbjct: 147 MRKIENVPTGPNNKPKLPVVISQ 169
Score = 39.5 bits (91), Expect = 3e-04
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNY--------YNGIKFHRIIRDFMIQ 103
+G + +EL+ P T NF + C + Y G FHR+I+DFMIQ
Sbjct: 19 EVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQ 71
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 87.6 bits (216), Expect = 6e-21
Identities = 51/103 (49%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
GGDPTGTGRGG FADE H EL+ +L+MAN+GP TNGSQFFIT+ T L+
Sbjct: 71 GGDPTGTGRGGPGYK---FADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLN 127
Query: 412 GKHAIFGRIYS--GMSVVKRIGLVETDKNDRPVDDVKILKTHV 452
+H IFG + VV+ I TD NDRP D V I +
Sbjct: 128 RRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 170
Score = 54.5 bits (130), Expect = 2e-09
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 15/67 (22%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCR---------------RNYYNGIKFHRIIRDFMIQ 103
N G+I + L+ HAP T NF L + +Y+G FHR+I+ FMIQ
Sbjct: 11 NRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQ 70
Query: 104 AMGVGGA 110
G
Sbjct: 71 GGDPTGT 77
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 87.3 bits (215), Expect = 6e-21
Identities = 55/100 (55%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 355 PTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKH 414
PTGTG GG SI+G F DE H L+H LSMAN+G +TNGSQFFIT+ PT WLD KH
Sbjct: 65 PTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKH 124
Query: 415 AIFGRIYSGMSVVKRIGLVETD-KNDRPVDDVKILKTHVR 453
+FGR+ GM VV+RI V+ + K D+P +DV I+ V+
Sbjct: 125 TVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 164
Score = 46.9 bits (110), Expect = 7e-07
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
+MG+I +L+ P T NF R YYNG FHRII+ FMIQ
Sbjct: 17 SMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQ 61
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 80.7 bits (198), Expect = 1e-18
Identities = 48/109 (44%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 339 RMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGS 398
++ AG G GG SIYG F D + LKH G G+LSMAN+GP+TNGS
Sbjct: 51 TFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPD-ENFTLKHVGPGVLSMANAGPNTNGS 109
Query: 399 QFFITLAPTQWLDGKHAIFGRIYSGMSVVKRIGLVETDKNDRPVDDVKI 447
QFFI T WLDGKH +FG + GM VVK+I + + R + I
Sbjct: 110 QFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSK-SGRTSKKIVI 157
Score = 51.0 bits (121), Expect = 3e-08
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQA------MGVGGA 110
+G +++EL P T NF LC + Y G FHR+I FM QA G GG
Sbjct: 16 LGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGK 75
Query: 111 SNVN-QLQDVIQNLHCWCNENLMVLNLEKCKVMSFYTN 147
S + D L L + N S +
Sbjct: 76 SIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFI 113
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 78.0 bits (191), Expect = 1e-17
Identities = 55/142 (38%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 307 FNLKVPLRKTRSCDMFVLEKNKTNIG-EFSPIQRMEKIGNHITSGAGGDPTGTGRGGSSI 365
+ VP+ + EK G F I + G GG SI
Sbjct: 23 RSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTN------HNGTGGKSI 76
Query: 366 YGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLDGKHAIFGRIYSGMS 425
YGK F DE KHTG G+LSMANSGP+TNGSQFF+T T WLDGKH +FG + G+
Sbjct: 77 YGKKFDDENFIL-KHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLD 135
Query: 426 VVKRIGLVETDKNDRPVDDVKI 447
V+++I + K+ +P V I
Sbjct: 136 VLRQIE-AQGSKDGKPKQKVII 156
Score = 46.4 bits (109), Expect = 1e-06
Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 3/76 (3%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELC---RRNYYNGIKFHRIIRDFMIQAMGVGGASNVNQL 116
G I + L P T NF LC + + G FHRII FM Q +
Sbjct: 15 AGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGK 74
Query: 117 QDVIQNLHCWCNENLM 132
+
Sbjct: 75 SIYGKKFDDENFILKH 90
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 76.1 bits (186), Expect = 9e-17
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 4/101 (3%)
Query: 352 GGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWLD 411
G G G SIYG+ F D+ + ++KH G+LSMANSGP+TNG QFFIT +WLD
Sbjct: 83 GDFINHNGSGSLSIYGEKF-DDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCEWLD 141
Query: 412 GKHAIFGRIYSG--MSVVKRIGLVETD-KNDRPVDDVKILK 449
GK+ +FGRI + ++K+I V +P + +++
Sbjct: 142 GKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVE 182
Score = 40.6 bits (94), Expect = 1e-04
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
Query: 60 MGEIIVELYWKHAPNTCRNFAELCRRNY--------YNGIKFHRIIRDFMIQ 103
+G+ EL+ P T NF + C Y Y FHR+I++FMIQ
Sbjct: 30 LGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFMIQ 81
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 71.5 bits (174), Expect = 2e-15
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 12/101 (11%)
Query: 364 SIYGKTFADEIHEELKHTGAGILSMANSGPDTNGSQFFITLAPTQWL--------DGKHA 415
+ +E + LK+T + P + +QFFI + +L +
Sbjct: 62 KATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYC 121
Query: 416 IFGRIYSGMSVVKRIGLVETDKN----DRPVDDVKILKTHV 452
+F + GM V +I V T ++ D P +DV I V
Sbjct: 122 VFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTV 162
Score = 55.3 bits (132), Expect = 8e-10
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
N G+I+++ + AP T +NF + CR +YN FHR+I FMIQ
Sbjct: 7 NHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQ 51
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 67.3 bits (163), Expect = 7e-14
Identities = 29/123 (23%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 339 RMEKIGNHITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTGAGILSMANSGPDTNGS 398
I T + +E L++T I + D+ S
Sbjct: 42 NNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATS 101
Query: 399 QFFITLAPTQWLD-----GKHAIFGRIYSGMSVVKRIGLVETDK----NDRPVDDVKILK 449
QFFI +A +LD +A+FG++ GM V +I V T + P V IL
Sbjct: 102 QFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILS 161
Query: 450 THV 452
V
Sbjct: 162 ATV 164
Score = 48.0 bits (113), Expect = 3e-07
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 59 NMGEIIVELYWKHAPNTCRNFAELCRRNYYNGIKFHRIIRDFMIQ 103
+ G I +EL + AP + +NF + +YN FHR+I FMIQ
Sbjct: 12 SAGNIELELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQ 56
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
[TaxId: 1396]}
Length = 417
Score = 27.5 bits (61), Expect = 3.8
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 344 GNHITSGAGGDPTGTG----RGG-SSIYGKTFADEIHEELKHTGAGILSMANS 391
G + S P G G S+YGK + + L++ I +A++
Sbjct: 222 GTKLISELAILPPSDGEQFLMNGYLSMYGKDYLEWYQGILENHTKLIGELAHN 274
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 70
Score = 24.6 bits (54), Expect = 6.8
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 364 SIYGKTFADEIHEELKHTGAGILSMAN 390
+YG T +HE+ G GI+S N
Sbjct: 16 QVYGTTLKALVHEKF---GDGIISAIN 39
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter
enzymogenes, 495 [TaxId: 69]}
Length = 198
Score = 26.0 bits (56), Expect = 7.9
Identities = 6/36 (16%), Positives = 11/36 (30%)
Query: 347 ITSGAGGDPTGTGRGGSSIYGKTFADEIHEELKHTG 382
+ SG G G + + + + L G
Sbjct: 157 VMSGGNVQSNGNNCGIPASQRSSLFERLQPILSQYG 192
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.414
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,748,656
Number of extensions: 83362
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 55
Length of query: 456
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 368
Effective length of database: 1,199,356
Effective search space: 441363008
Effective search space used: 441363008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)