BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10312
(73 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3U0S|A Chain A, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
pdb|3U0S|B Chain B, Crystal Structure Of An Enzyme Redesigned Through
Multiplayer Online Gaming: Ce6
Length = 337
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 212 KLWSYDIKG----PAKIENKKVWGHIPGTHKGGAAGMD 245
>pdb|3I1C|A Chain A, Crystal Structure Of A Novel Engineered Diels-Alderase:
Da_20_00_a74i
Length = 324
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHKGGAAGMD 232
>pdb|2IAS|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244f Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|2IAT|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244l Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|2IAU|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244y Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|2IAR|A Chain A, Crystal Structure Of Squid Ganglion Dfpase W244h Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|3HLH|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLH|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 232
>pdb|3LI4|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), N120d,N175d,D229n
Mutant
Length = 314
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGANGMD 232
>pdb|3LI5|A Chain A, Diisopropyl Fluorophosphatase (Dfpase),
E21q,N120d,N175d,D229n Mutant
Length = 314
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGANGMD 232
>pdb|3HLI|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|B Chain B, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|C Chain C, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
pdb|3HLI|D Chain D, Diisopropyl Fluorophosphatase (Dfpase), Active Site
Mutants
Length = 314
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 232
>pdb|2IAW|A Chain A, Crystal Structure Of Squid Ganglion Dfpase N175d Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|2IAV|A Chain A, Crystal Structure Of Squid Ganglion Dfpase H287a Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|3LI3|A Chain A, Diisopropyl Fluorophosphatase (Dfpase), D121e Mutant
Length = 314
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 232
>pdb|2GVX|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase),
Mutant D229n N175D
Length = 314
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGANGMD 232
>pdb|2GVU|A Chain A, Crystal Structure Of Diisopropyl Fluorophosphatase
(Dfpase), Mutant D229n N120D
Length = 314
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGANGMD 232
>pdb|2IAQ|A Chain A, Crystal Structure Of Squid Ganglion Dfpase S271a Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|2IAO|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E37q Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|2IAP|A Chain A, Crystal Structure Of Squid Ganglion Dfpase E21q Mutant
Length = 312
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 230
>pdb|1E1A|A Chain A, Crystal Structure Of Dfpase From Loligo Vulgaris
pdb|1PJX|A Chain A, 0.85 Angstrom Structure Of Squid Ganglion Dfpase
pdb|2GVV|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase) In
Complex With Dicyclopentylphosphoroamidate (Dcppa)
pdb|2GVW|A Chain A, Structure Of Diisopropyl Fluorophosphatase (Dfpase)
Holoenzyme (Rt)
pdb|3BYC|A Chain A, Joint Neutron And X-Ray Structure Of Diisopropyl
Fluorophosphatase. Deuterium Occupancies Are 1-Q, Where
Q Is Occupancy Of H
pdb|3KGG|A Chain A, X-Ray Structure Of Perdeuterated Diisopropyl
Fluorophosphata (Dfpase): Perdeuteration Of Proteins For
Neutron Diffractio
pdb|3O4P|A Chain A, Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
Length = 314
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGED 61
+LW +++ P ++ K WGH P T+ GG G D
Sbjct: 199 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADGMD 232
>pdb|2IAX|A Chain A, Crystal Structure Of Squid Ganglion Dfpase D232s Mutant
Length = 312
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 24 ELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWG 59
+LW +++ P ++ K WGH P T+ GG G
Sbjct: 197 KLWSYDIKG----PAKIENKKVWGHIPGTHEGGADG 228
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.140 0.478
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,662,225
Number of Sequences: 62578
Number of extensions: 101553
Number of successful extensions: 181
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 22
length of query: 73
length of database: 14,973,337
effective HSP length: 43
effective length of query: 30
effective length of database: 12,282,483
effective search space: 368474490
effective search space used: 368474490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)