BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10312
         (73 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8SY33|GAWKY_DROME Protein Gawky OS=Drosophila melanogaster GN=gw PE=1 SV=1
          Length = 1384

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 37/46 (80%)

Query: 19 IFTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG 64
          I  GT+LWE+NLRNGGQP  Q   K  WGHTP++N+GGTWGEDD+G
Sbjct: 45 INNGTDLWESNLRNGGQPAAQQVPKPSWGHTPSSNLGGTWGEDDDG 90


>sp|C1CX89|PYRD_DEIDV Dihydroorotate dehydrogenase (quinone) OS=Deinococcus deserti
          (strain VCD115 / DSM 17065 / LMG 22923) GN=pyrD PE=3
          SV=1
          Length = 360

 Score = 31.2 bits (69), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 20/43 (46%)

Query: 26 WEANLRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEGESIP 68
          W A  R    P      +T WGHT A+ +G   G D  G ++P
Sbjct: 35 WPAAARRLSAPADSRLMQTLWGHTYASPVGLAAGLDKNGVAVP 77


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.140    0.478 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,276,529
Number of Sequences: 539616
Number of extensions: 1276006
Number of successful extensions: 2086
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2082
Number of HSP's gapped (non-prelim): 4
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)