Query psy10312
Match_columns 73
No_of_seqs 19 out of 21
Neff 1.7
Searched_HMMs 29240
Date Fri Aug 16 23:17:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10312.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10312hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u85_B Histone-lysine N-methyl 35.0 9.3 0.00032 19.4 0.2 8 3-10 1-8 (21)
2 3off_A LDLR chaperone BOCA; ME 28.4 18 0.0006 23.2 0.8 14 21-34 29-42 (90)
3 2i9s_A MESD, mesoderm developm 24.6 24 0.00082 22.7 0.9 13 22-34 36-48 (97)
4 3ofh_A LDLR chaperone MESD; mo 19.0 37 0.0013 21.6 0.9 13 22-34 29-41 (89)
5 3k7b_A Protein A33; C-type lec 17.3 17 0.00058 23.2 -1.0 49 13-64 17-69 (96)
6 1yiq_A Quinohemoprotein alcoho 16.9 23 0.00079 26.7 -0.5 23 16-38 500-522 (689)
7 2kgl_A Mesoderm development ca 16.6 53 0.0018 23.6 1.3 14 21-34 93-106 (195)
8 1w6s_A Methanol dehydrogenase 14.1 32 0.0011 26.1 -0.4 23 16-38 498-520 (599)
9 2hsn_A Methionyl-tRNA syntheta 12.5 36 0.0012 22.9 -0.5 10 20-29 53-62 (160)
10 1flg_A Protein (quinoprotein e 11.8 39 0.0013 25.1 -0.5 23 16-38 511-533 (582)
No 1
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=34.95 E-value=9.3 Score=19.40 Aligned_cols=8 Identities=63% Similarity=1.207 Sum_probs=5.5
Q ss_pred ccccceee
Q psy10312 3 SRFRFPLE 10 (73)
Q Consensus 3 ~~~~~~~~ 10 (73)
||.|||..
T Consensus 1 srwrfpar 8 (21)
T 3u85_B 1 SRWRFPAR 8 (26)
T ss_pred CccccccC
Confidence 57777754
No 2
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=28.42 E-value=18 Score=23.16 Aligned_cols=14 Identities=43% Similarity=0.674 Sum_probs=11.8
Q ss_pred cchhhhHhhhhcCC
Q psy10312 21 TGTELWEANLRNGG 34 (73)
Q Consensus 21 nGTelWEaNLRNGG 34 (73)
.=|.||.++|+|..
T Consensus 29 ~lt~lWqtsL~Nnh 42 (90)
T 3off_A 29 TITKLWQTSLWNNH 42 (90)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC
Confidence 34789999999986
No 3
>2i9s_A MESD, mesoderm development candidate 2; ferredoxin-like-fold, chaperone; NMR {Mus musculus}
Probab=24.63 E-value=24 Score=22.74 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=11.3
Q ss_pred chhhhHhhhhcCC
Q psy10312 22 GTELWEANLRNGG 34 (73)
Q Consensus 22 GTelWEaNLRNGG 34 (73)
=|.+|.+.|||+.
T Consensus 36 it~~WqtsL~Nnh 48 (97)
T 2i9s_A 36 ITSLWQGSLFNAN 48 (97)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhCC
Confidence 3689999999986
No 4
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=18.96 E-value=37 Score=21.62 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=11.3
Q ss_pred chhhhHhhhhcCC
Q psy10312 22 GTELWEANLRNGG 34 (73)
Q Consensus 22 GTelWEaNLRNGG 34 (73)
=|.+|.+.|+|..
T Consensus 29 it~~WqtsL~Nnh 41 (89)
T 3ofh_A 29 ITSLWQGSLFNAN 41 (89)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 3789999999986
No 5
>3k7b_A Protein A33; C-type lectin-like domain, homodimer, poxvirus, EEV, EV, VIR protein; 2.10A {Vaccinia virus WR}
Probab=17.25 E-value=17 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.431 Sum_probs=30.3
Q ss_pred CCceeccccchhhhHhh----hhcCCCCCCCCccCCCCcCCCCCCCCCccccCCCC
Q psy10312 13 GANCCFIFTGTELWEAN----LRNGGQPPPQVAQKTPWGHTPATNIGGTWGEDDEG 64 (73)
Q Consensus 13 g~~~~~~nnGTelWEaN----LRNGGQpp~q~~~ktPWGhtP~~N~GGTWGeDDd~ 64 (73)
|-.|...+.-.--|+.- .+.|+..|.....+.|| =..-+=||||+|-..
T Consensus 17 ~~~CY~f~~~pkTW~eA~~~C~~~G~~Lpsi~s~~~~w---L~~YL~gTWg~~~~~ 69 (96)
T 3k7b_A 17 QGSCYILHSDYQMFSDAAANCTAESSTLPNKSDVMITW---LIDYVEDTWGSDGNP 69 (96)
T ss_dssp TTEEEEEEEEEECHHHHHHHHHHTTCBCCCHHHHTTST---THHHHBTSBCTTSSB
T ss_pred CCeeEEEeCCCCCHHHHHHHHHHcCCccCCcccchhHH---HHHHHhccccccCCc
Confidence 33444444444555432 35678888765554599 455688999997643
No 6
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=16.90 E-value=23 Score=26.69 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=19.0
Q ss_pred eeccccchhhhHhhhhcCCCCCC
Q psy10312 16 CCFIFTGTELWEANLRNGGQPPP 38 (73)
Q Consensus 16 ~~~~nnGTelWEaNLRNGGQpp~ 38 (73)
.+...||.+||+..+..|.+..|
T Consensus 500 a~D~~tG~~lw~~~~~~~~~~~p 522 (689)
T 1yiq_A 500 AYAADTGEKLWEQPAASGVMAAP 522 (689)
T ss_dssp EEETTTCCEEEEEECSSCCCSCC
T ss_pred EEECCCCccceeeeCCCCcccCc
Confidence 35678999999999998887665
No 7
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD, WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Probab=16.64 E-value=53 Score=23.57 Aligned_cols=14 Identities=36% Similarity=0.593 Sum_probs=11.7
Q ss_pred cchhhhHhhhhcCC
Q psy10312 21 TGTELWEANLRNGG 34 (73)
Q Consensus 21 nGTelWEaNLRNGG 34 (73)
.=|.+|.++|||+.
T Consensus 93 ~it~lWQtsL~Nnh 106 (195)
T 2kgl_A 93 EITSLWQGSLFNAN 106 (195)
T ss_dssp HHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCC
Confidence 34789999999986
No 8
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=14.11 E-value=32 Score=26.13 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=18.9
Q ss_pred eeccccchhhhHhhhhcCCCCCC
Q psy10312 16 CCFIFTGTELWEANLRNGGQPPP 38 (73)
Q Consensus 16 ~~~~nnGTelWEaNLRNGGQpp~ 38 (73)
...+.||.+||+..|..|.+..|
T Consensus 498 A~D~~tG~~lW~~~l~~g~~~~P 520 (599)
T 1w6s_A 498 ARDSDTGDLLWKFKIPSGAIGYP 520 (599)
T ss_dssp EEETTTCCEEEEEECSSCCCSCC
T ss_pred EEECCCCCEEEEeeCCCCcEecc
Confidence 35678999999999988887665
No 9
>2hsn_A Methionyl-tRNA synthetase, cytoplasmic; protein complex protein interaction GST-fold, ligase/RNA binding protein complex; 2.20A {Saccharomyces cerevisiae}
Probab=12.49 E-value=36 Score=22.92 Aligned_cols=10 Identities=30% Similarity=0.218 Sum_probs=8.8
Q ss_pred ccchhhhHhh
Q psy10312 20 FTGTELWEAN 29 (73)
Q Consensus 20 nnGTelWEaN 29 (73)
|+|..|||+|
T Consensus 53 ~~~~~l~esn 62 (160)
T 2hsn_A 53 KEPFLLFDAN 62 (160)
T ss_dssp SCCSCCCCHH
T ss_pred CCCeEEEchH
Confidence 4799999998
No 10
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=11.82 E-value=39 Score=25.12 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=17.7
Q ss_pred eeccccchhhhHhhhhcCCCCCC
Q psy10312 16 CCFIFTGTELWEANLRNGGQPPP 38 (73)
Q Consensus 16 ~~~~nnGTelWEaNLRNGGQpp~ 38 (73)
...+.+|.+||+..+-.|.+.+|
T Consensus 511 A~D~~tG~~lW~~~~~~g~~a~P 533 (582)
T 1flg_A 511 AFDAKSGKELWKFQTGSGIVSPP 533 (582)
T ss_dssp EEETTTCCEEEEEECSSCCCSCC
T ss_pred EEECCCCCEEEEecCCCCcccCc
Confidence 35668999999999977766554
Done!