RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10312
         (73 letters)



>gnl|CDD|185216 PRK15316, PRK15316, RatA-like protein; Provisional.
          Length = 2683

 Score = 25.8 bits (56), Expect = 2.6
 Identities = 9/15 (60%), Positives = 9/15 (60%)

Query: 38  PQVAQKTPWGHTPAT 52
           P V Q T WGH P T
Sbjct: 319 PDVPQATMWGHMPDT 333


>gnl|CDD|204658 pfam11477, PM0188, Sialyltransferase PMO188.  PMO188 is a
           sialyltransferase from P.multocida. It transfers sialic
           acid from cytidine 5'-monophosphonuraminic acid to an
           acceptor sugar. It has important catalytic residues such
           as Asp141, His311, Glu338, Ser355 and Ser356.
          Length = 381

 Score = 25.6 bits (56), Expect = 2.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 18  FIFTGTELWEAN 29
           FIFTGT  W  +
Sbjct: 242 FIFTGTTTWNGD 253


>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
          Length = 624

 Score = 25.0 bits (55), Expect = 4.3
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 9/41 (21%)

Query: 36  PPPQVAQKTPWGHTPATNI--------GGTWGEDDEGESIP 68
           PPP      PW HT   N         GGT   DD G+ +P
Sbjct: 263 PPPVSLDWMPWNHTMGGNANFNGLLWGGGTLYIDD-GKPLP 302


>gnl|CDD|234101 TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent
           dehydrogenase, glucose/quinate/shikimate family.  This
           protein family has a phylogenetic distribution very
           similar to that coenzyme PQQ biosynthesis enzymes, as
           shown by partial phylogenetic profiling. Members of this
           family have several predicted transmembrane helices in
           the N-terminal region, and include the quinoprotein
           glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli
           and the quinate/shikimate dehydrogenase of Acinetobacter
           sp. ADP1 (EC 1.1.99.25). Sequences closely related
           except for the absense of the N-terminal hydrophobic
           region, scoring in the gray zone between the trusted and
           noise cutoffs, include PQQ-dependent glycerol (EC
           1.1.99.22) and and other polyol (sugar alcohol)
           dehydrogenases.
          Length = 764

 Score = 24.6 bits (54), Expect = 5.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)

Query: 21  TGTELWEANLRNGGQPPP 38
           TG ELW+A L  GGQ  P
Sbjct: 711 TGKELWKARLPAGGQATP 728


>gnl|CDD|220823 pfam10605, 3HBOH, 3HB-oligomer hydrolase (3HBOH).
           D-(-)-3-hydroxybutyrate oligomer hydrolase (also known
           as 3HB-oligomer hydrolase) functions in the degradation
           of poly-3-hydroxybutyrate (PHB). It catalyzes the
           hydrolysis of D(-)-3-hydroxybutyrate oligomers
           (3HB-oligomers) into 3HB-monomers.
          Length = 689

 Score = 24.7 bits (54), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 28  ANLRNGGQ-PPPQVAQKTPWGHTPAT 52
           ANL++G   PP QV +  P G TP  
Sbjct: 631 ANLKSGTPLPPSQVVRTVPRGGTPGA 656


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.140    0.478 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,773,647
Number of extensions: 270812
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 6
Length of query: 73
Length of database: 10,937,602
Length adjustment: 43
Effective length of query: 30
Effective length of database: 9,030,380
Effective search space: 270911400
Effective search space used: 270911400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)