RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10312
         (73 letters)



>1cpy_A Serine carboxypeptidase; hydrolase (carboxypeptidase); HET: NAG;
           2.60A {Saccharomyces cerevisiae} SCOP: c.69.1.5 PDB:
           1wpx_A* 1ysc_A*
          Length = 421

 Score = 25.3 bits (56), Expect = 2.1
 Identities = 5/39 (12%), Positives = 10/39 (25%)

Query: 20  FTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTW 58
           + G + W   L           +   W  +    + G  
Sbjct: 343 WLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEV 381


>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
           membrane, transport protein; HET: ACH MES; 2.91A
           {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
           2vl0_A 2yks_A
          Length = 322

 Score = 24.2 bits (53), Expect = 3.8
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 3   SRFRFPLEFLGANCCFIFTGTEL 25
            R  FPL FL   C  +  G  L
Sbjct: 300 CRLAFPLGFLAIGCVLVIRGITL 322


>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
           cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
           {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
          Length = 677

 Score = 24.2 bits (52), Expect = 4.4
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 21  TGTELWEANLRNGGQPPP 38
           TG +LWEA    G    P
Sbjct: 507 TGEKLWEAPTGTGVVAAP 524


>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
           oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
          Length = 689

 Score = 24.2 bits (52), Expect = 4.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 21  TGTELWEANLRNGGQPPP 38
           TG +LWE    +G    P
Sbjct: 505 TGEKLWEQPAASGVMAAP 522


>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
           oxidoreductase, calcium- binding, methanol utilization,
           PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
           b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
          Length = 599

 Score = 24.1 bits (52), Expect = 5.2
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 21  TGTELWEANLRNGGQPPP 38
           TG  LW+  + +G    P
Sbjct: 503 TGDLLWKFKIPSGAIGYP 520


>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native,
           oxidoredu; HET: PQQ; 1.50A {Methylophilus
           methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A*
           4aah_A* 1g72_A*
          Length = 571

 Score = 24.1 bits (52), Expect = 5.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 21  TGTELWEANLRNGGQPPP 38
            G ELW   + +GG   P
Sbjct: 494 DGKELWNFKMPSGGIGSP 511


>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel,
           oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa}
           SCOP: b.70.1.1
          Length = 582

 Score = 24.2 bits (52), Expect = 5.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 21  TGTELWEANLRNGGQPPP 38
           +G ELW+    +G   PP
Sbjct: 516 SGKELWKFQTGSGIVSPP 533


>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
           oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
           putida} SCOP: a.3.1.6 b.70.1.1
          Length = 668

 Score = 23.8 bits (51), Expect = 6.6
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 21  TGTELWEANLRNGGQPPP 38
            G  LW+   ++G    P
Sbjct: 488 KGEALWQFEAQSGIVAAP 505


>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
          coxsackievirus A21, cryo-electron
          microscopy,virus-receptor complex, icosahedral virus;
          HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3
          b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
          Length = 450

 Score = 23.7 bits (50), Expect = 8.7
 Identities = 4/26 (15%), Positives = 6/26 (23%)

Query: 33 GGQPPPQVAQKTPWGHTPATNIGGTW 58
              P  +  +TP         G   
Sbjct: 24 SCDQPMLLGIETPLPKKELLLPGNNR 49


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.140    0.478 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,174,689
Number of extensions: 53343
Number of successful extensions: 121
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 10
Length of query: 73
Length of database: 6,701,793
Length adjustment: 43
Effective length of query: 30
Effective length of database: 5,501,190
Effective search space: 165035700
Effective search space used: 165035700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)