RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10312
         (73 letters)



>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 421

 Score = 26.3 bits (57), Expect = 0.30
 Identities = 5/39 (12%), Positives = 10/39 (25%)

Query: 20  FTGTELWEANLRNGGQPPPQVAQKTPWGHTPATNIGGTW 58
           + G + W   L           +   W  +    + G  
Sbjct: 343 WLGNKAWTDVLPWKYDEEFASQKVRNWTASITDEVAGEV 381


>d2ex0a1 c.87.1.9 (A:26-412)
           Alpha-2,3/2,6-sialyltransferase/sialidase {Pasteurella
           multocida [TaxId: 747]}
          Length = 387

 Score = 25.2 bits (55), Expect = 0.82
 Identities = 9/12 (75%), Positives = 9/12 (75%)

Query: 18  FIFTGTELWEAN 29
           FIFTGT  WE N
Sbjct: 237 FIFTGTTTWEGN 248


>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase,
           N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}
          Length = 560

 Score = 24.9 bits (53), Expect = 1.1
 Identities = 5/18 (27%), Positives = 8/18 (44%)

Query: 21  TGTELWEANLRNGGQPPP 38
            G  LW+   ++G    P
Sbjct: 488 KGEALWQFEAQSGIVAAP 505


>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase,
           N-terminal domain {Comamonas testosteroni [TaxId: 285]}
          Length = 573

 Score = 24.9 bits (53), Expect = 1.1
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 21  TGTELWEANLRNGGQPPP 38
           TG +LWEA    G    P
Sbjct: 507 TGEKLWEAPTGTGVVAAP 524


>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa
           [TaxId: 287]}
          Length = 582

 Score = 24.5 bits (52), Expect = 1.3
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 21  TGTELWEANLRNGGQPPP 38
           +G ELW+    +G   PP
Sbjct: 516 SGKELWKFQTGSGIVSPP 533


>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain
           {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
          Length = 571

 Score = 24.5 bits (52), Expect = 1.4
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query: 21  TGTELWEANLRNGGQPPP 38
            G ELW   + +GG   P
Sbjct: 494 DGKELWNFKMPSGGIGSP 511


>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain
           {Methylobacterium extorquens [TaxId: 408]}
          Length = 596

 Score = 24.1 bits (51), Expect = 1.8
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 21  TGTELWEANLRNGGQPPP 38
           TG  LW+  + +G    P
Sbjct: 503 TGDLLWKFKIPSGAIGYP 520


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.140    0.478 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 297,704
Number of extensions: 10963
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 9
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)