RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10314
         (233 letters)



>gnl|CDD|214566 smart00216, VWD, von Willebrand factor (vWF) type D domain.  Von
           Willebrand factor contains several type D domains: D1
           and D2 are present within the N-terminal propeptide
           whereas the remaining D domains are required for
           multimerisation.
          Length = 163

 Score =  134 bits (340), Expect = 4e-40
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 9/166 (5%)

Query: 7   WKCSKEECPGICTAWGDSHFQTFDAKNFDFQGACEYVLVKGANEEEEEAFVVVIEVVPCG 66
           W C++EEC   C+  GD H+ TFD   + F G C YVL +      E  F V+++ VPCG
Sbjct: 1   WCCTQEECSPTCSVSGDPHYTTFDGVAYTFPGNCYYVLAQDC--SSEPTFSVLLKNVPCG 58

Query: 67  STGVSCSKSVKISTGS------KKNAESITLTRNKPLPNSGEYHKLSVREAGLFVFVELH 120
             G +C KSVK+            N +     +   LP       + +R +G ++ V   
Sbjct: 59  G-GATCLKSVKVELNGDEIELKDDNGKVTVNGQQVSLPYKTSDGSIQIRSSGGYLVVITS 117

Query: 121 DIGVTVQWDKGTRVSVTLSPKWKNKVKGLCGNYNDNELDDFQSPSG 166
              + V +D  T +SV L  K++ K  GLCGN++    DDF++P G
Sbjct: 118 LGLIQVTFDGLTLLSVQLPSKYRGKTCGLCGNFDGEPEDDFRTPDG 163


>gnl|CDD|215713 pfam00094, VWD, von Willebrand factor type D domain.
           Luciferin-2-monooxygenase from Vargula hilgendorfii
           contains a vwd domain. Its function is unrelated but the
           similarity is very strong by several methods.
          Length = 159

 Score =  121 bits (304), Expect = 1e-34
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 18  CTAWGDSHFQTFDAKNFDFQGACEY--VLVKGANEEEEEAFVVVIEVVPCGSTGVSCSKS 75
           C+  GD H+ TFD  ++ F G C Y  VL +  + E    F V+ + V  G+ GV+C KS
Sbjct: 1   CSVSGDPHYTTFDGVSYTFPGNCSYVLVLAQDCSSEPSFKFSVLNKNVNDGAEGVTCLKS 60

Query: 76  VKISTGS-----KKNAESITLTRNKPLPNSGEYHKLSV-REAGLFVFVELH-DIGVTVQW 128
           V +  G+         +   L   + +          +      FV V L   + +    
Sbjct: 61  VTVILGNLEIELVPGNQVKVLVNGQEVSLPYSSDNGLIEILGSGFVLVTLRLGVTLQFDG 120

Query: 129 DKGTRVSVTLSPKWKNKVKGLCGNYNDNELDDFQSPSG 166
           D  T++ V+LSP ++ K  GLCGN++    DDF++P G
Sbjct: 121 DGRTQLFVSLSPMYRGKTCGLCGNFDGEPADDFRTPDG 158


>gnl|CDD|219998 pfam08742, C8, C8 domain.  This domain contains 8 conserved
           cysteine residues, but this family only contains 7 of
           them to overlaps with other domains. It is found in
           disease-related proteins including von Willebrand
           factor, Alpha tectorin, Zonadhesin and Mucin. It is
           often found on proteins containing pfam00094 and
           pfam01826.
          Length = 74

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 203 KLWAVKQCNLLKSELFQPCHSEVPVDSFFER 233
           K  A +QC +L S +F  CHS V  + F+E 
Sbjct: 1   KSKAEEQCGILLSPVFAECHSVVDPEPFYEA 31


>gnl|CDD|214843 smart00832, C8, This domain contains 8 conserved cysteine residues.
            Not all of the conserved cysteines have been included
           in the alignment model. It is found in disease-related
           proteins including von Willebrand factor, Alpha
           tectorin, Zonadhesin and Mucin.
          Length = 76

 Score = 32.3 bits (74), Expect = 0.030
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 205 WAVKQCNLLKSEL--FQPCHSEVPVDSFFER 233
           +A  QC +L S    F  CHS V  + FFE 
Sbjct: 3   YACSQCGILLSPRGPFAACHSVVDPEPFFEN 33


>gnl|CDD|182129 PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small
           permease protein YiaM; Provisional.
          Length = 157

 Score = 29.5 bits (66), Expect = 0.94
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)

Query: 106 LSVREAGLFVFVELHDIGVTVQWDKGTRVSVT-----LSPKWKNKV 146
           LSV E   ++FV L  IG  V +     V VT     LSP  + +V
Sbjct: 35  LSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFLVEKLSPANQRRV 80


>gnl|CDD|220736 pfam10409, PTEN_C2, C2 domain of PTEN tumour-suppressor protein.
           This is the C2 domain-like domain, in greek key form, of
           the PTEN protein, phosphatidyl-inositol triphosphate
           phosphatase, and it is the C-terminus. This domain may
           well include a CBR3 loop which means it plays a central
           role in membrane binding. This domain associates across
           an extensive interface with the N-terminal phosphatase
           domain DSPc (pfam00782) suggesting that the C2 domain
           productively positions the catalytic part of the protein
           onto the membrane.
          Length = 129

 Score = 28.4 bits (64), Expect = 1.9
 Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 14/72 (19%)

Query: 58  VVIEVVPCGSTGVSCSKSVKISTGSKKNAESITLTRNKPLPNSGEYHKLSVREAGLFVFV 117
           +++  +P   +G  C   ++I               +K +  S +Y  L   +    + +
Sbjct: 11  IILHGIPNFKSGGGCRPYIRIYNN------------DKKVSTSKKYEILKKYQQKDCIIL 58

Query: 118 ELHDIGVTVQWD 129
                G+ VQ D
Sbjct: 59  F--PKGLPVQGD 68


>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit.
            The F-ATPase is found in bacterial plasma membranes,
           mitochondrial inner membranes and in chloroplast
           thylakoid membranes. It has also been found in the
           archaea Methanosarcina barkeri. It uses a proton
           gradient to drive ATP synthesis and hydrolyzes ATP to
           build the proton gradient. The extrinisic membrane
           domain of F-ATPases is composed of alpha, beta, gamma,
           delta, and epsilon (not present in bacteria) subunits
           with a stoichiometry of 3:3:1:1:1. Alpha and beta
           subunit form the globular catalytic moiety, a hexameric
           ring of alternating subunits. Gamma, delta and epsilon
           subunits form a stalk, connecting F1 to F0, the integral
           membrane proton translocating domain.
          Length = 282

 Score = 28.3 bits (64), Expect = 3.7
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 147 KGLCGNYNDN 156
           +GLCG +N N
Sbjct: 84  RGLCGGFNSN 93


>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase. 
          Length = 288

 Score = 27.9 bits (63), Expect = 4.9
 Identities = 6/10 (60%), Positives = 8/10 (80%)

Query: 147 KGLCGNYNDN 156
           +GLCG +N N
Sbjct: 85  RGLCGGFNSN 94


>gnl|CDD|184693 PRK14467, PRK14467, ribosomal RNA large subunit methyltransferase
           N; Provisional.
          Length = 348

 Score = 27.0 bits (60), Expect = 9.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 41  EYVLVKGANEEEEEA 55
           EYVL+KG N+  E+A
Sbjct: 256 EYVLIKGVNDSPEDA 270


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0714    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,334,571
Number of extensions: 998436
Number of successful extensions: 682
Number of sequences better than 10.0: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 10
Length of query: 233
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 139
Effective length of database: 6,768,326
Effective search space: 940797314
Effective search space used: 940797314
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.8 bits)