RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10314
         (233 letters)



>3byp_A CZRB protein; membrane protein, zinc transporter, transport
           protein; 1.70A {Thermus thermophilus} SCOP: d.52.9.1
           PDB: 3byr_A
          Length = 94

 Score = 29.6 bits (67), Expect = 0.26
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 102 EYHKLSVREAGLFVFVELH 120
           E H L  R AG   F+E H
Sbjct: 29  EVHDLKTRRAGPRSFLEFH 47


>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter,
           cell inner membrane, cell membrane, ION transport, iron
           transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
          Length = 283

 Score = 30.2 bits (69), Expect = 0.51
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 102 EYHKLSVREAGLFVFVELH 120
             H L  R++G   F+++H
Sbjct: 223 GAHDLRTRQSGPTRFIQIH 241


>2zzt_A Putative uncharacterized protein; cation diffusion facilitator
           (CDF), transporter, zinc, membrane protein, cytosolic
           domain; 2.84A {Thermotoga maritima}
          Length = 107

 Score = 27.4 bits (61), Expect = 1.9
 Identities = 5/19 (26%), Positives = 10/19 (52%)

Query: 102 EYHKLSVREAGLFVFVELH 120
             H++ +R  G   F+E+ 
Sbjct: 27  NPHRVRIRRVGTKYFIEMD 45


>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation,
           transcriptional repression, DNA- binding protein; HET:
           DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
          Length = 100

 Score = 26.7 bits (59), Expect = 2.8
 Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 169 SEVSPVVFGDSWRVHTYCPPSIQIQDTCSKHPNRKLWAVKQCNLLKSE 216
           ++V  +V  ++  V+T+  P    +   ++   R L      N    E
Sbjct: 56  TQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGRNLIQ-ACLNAPDDE 100


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0804    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,585,345
Number of extensions: 199403
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 398
Number of HSP's successfully gapped: 6
Length of query: 233
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 143
Effective length of database: 4,188,903
Effective search space: 599013129
Effective search space used: 599013129
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.2 bits)