RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10314
         (233 letters)



>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus
           thermophilus [TaxId: 274]}
          Length = 82

 Score = 27.0 bits (60), Expect = 0.59
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 102 EYHKLSVREAGLFVFVELH 120
           E H L  R AG   F+E H
Sbjct: 24  EVHDLKTRRAGPRSFLEFH 42


>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting
           protein 36, VPS36 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 130

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 74  KSVKISTGSKKNAESITLTRNKPLPNSGEYHKLSVREAGLFVFVE 118
             V  S+G    +  + L   K   +S E+ +LS R++   +F +
Sbjct: 75  AYVNYSSGFLTRSPRLIL-FFKDPSSSTEFVQLSFRKSDGVLFSQ 118


>d2qfia1 d.52.9.1 (A:209-290) Ferrous-iron efflux pump FieF (YiiP)
           {Escherichia coli [TaxId: 562]}
          Length = 82

 Score = 25.4 bits (56), Expect = 2.5
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 102 EYHKLSVREAGLFVFVELH 120
             H L  R++G   F+++H
Sbjct: 22  GAHDLRTRQSGPTRFIQIH 40


>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
           {Thermotoga maritima [TaxId: 2336]}
          Length = 161

 Score = 26.0 bits (57), Expect = 2.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 6/35 (17%)

Query: 112 GLFV---FVELH--DIGVTVQWDKGTRVSVTLSPK 141
           GL +    VELH   I V  +  KG+R  V + PK
Sbjct: 125 GLAITKEIVELHGGRIWVESEVGKGSRFFVWI-PK 158


>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 85

 Score = 24.7 bits (54), Expect = 4.4
 Identities = 7/37 (18%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 169 SEVSPVVFGDSWRVHTYCPPSIQIQDTCSKHPNRKLW 205
           ++V  +V  ++  V+T+  P    +   ++   R L 
Sbjct: 42  TQVLLLVVSETGLVYTFSTPK--FEPIVTQQEGRNLI 76


>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid
           dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 193

 Score = 25.6 bits (55), Expect = 4.6
 Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 6/39 (15%)

Query: 112 GLFV---FVELH--DIGVTVQWDKGTRVSVTLSPKWKNK 145
           GL     + E     + +      GT V + L      +
Sbjct: 154 GLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRL-RHIDGR 191


>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 84

 Score = 23.5 bits (51), Expect = 9.5
 Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 169 SEVSPVVFGDSWRVHTYCPPSIQIQDTCSKHPNRKLWAVKQCNLLKSE 216
           ++V  +V  ++  V+T+      +Q   +    + L    Q  L   +
Sbjct: 42  TQVLLLVASETGHVYTFATRK--LQPMITSETGKALI---QTCLNSPD 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.426 

Gapped
Lambda     K      H
   0.267   0.0667    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 920,460
Number of extensions: 42069
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 11
Length of query: 233
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 151
Effective length of database: 1,281,736
Effective search space: 193542136
Effective search space used: 193542136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.6 bits)