BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10316
(254 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 11/123 (8%)
Query: 3 QALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVHNF 62
+A +++ + G GLWKG P + R+ + V+Y+ +K + ++ + +
Sbjct: 149 EAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTS 208
Query: 63 LFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYRAL 122
FG AG ++ +P D+VKT M S + S +L +G RA
Sbjct: 209 AFG--AGFCTTVIASPVDVVKT---------RYMNSALGQYHSAGHCALTMLRKEGPRAF 257
Query: 123 FTG 125
+ G
Sbjct: 258 YKG 260
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 7 SLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVHNFLFGS 66
++++ G L+ GL+ L R + F+++ Y+ +K Y + S+ + L GS
Sbjct: 56 TMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG---SEHAGIGSRLLAGS 112
Query: 67 LAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYRALFTG 125
G++A V P D+VK Q + R QST + +G R L+ G
Sbjct: 113 TTGALAVAVAQPTDVVKVRFQ-----AQARAGGGRRYQSTVEAYKTIAREEGIRGLWKG 166
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 7 SLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQP 56
++++ G +KG MP+ LR ++ + +V+YEQLK + + +Q + P
Sbjct: 247 TMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAP 296
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 61 NFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLT---SK 117
FL A +A L+T P D K QI ++++ S + +L +LT ++
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAA--SAQYRGVLGTILTMVRTE 61
Query: 118 GYRALFTG 125
G R+L+ G
Sbjct: 62 GPRSLYNG 69
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 10/118 (8%)
Query: 12 HGFTGLWKGLMPTLLRDVPFSAIYWV---SYEQLKASYIRRH-QYSKQPSLVHNFLFGSL 67
GF W+G + ++R P A+ + Y+Q+ + RH Q+ + N G
Sbjct: 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRY--FAGNLASGGA 121
Query: 68 AGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYRALFTG 125
AG+ + P D +T DV + + + ++ S G R L+ G
Sbjct: 122 AGATSLCFVYPLDFARTRLAADVGKG----AAQREFTGLGNCITKIFKSDGLRGLYQG 175
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 61 NFLFGSLAGSVAALVTTPFDIVKTLRQIDVAE 92
N +F SLAG +A+ + P D+V + QI E
Sbjct: 405 NAMFQSLAGRTSAIRSLPIDVVSNIYQISREE 436
>pdb|2RJB|A Chain A, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787)
From Shigella Flexneri Which Includes Domain Duf1338.
Northeast Structural Genomics Consortium Target Sfr276
pdb|2RJB|B Chain B, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787)
From Shigella Flexneri Which Includes Domain Duf1338.
Northeast Structural Genomics Consortium Target Sfr276
pdb|2RJB|C Chain C, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787)
From Shigella Flexneri Which Includes Domain Duf1338.
Northeast Structural Genomics Consortium Target Sfr276
pdb|2RJB|D Chain D, Crystal Structure Of Uncharacterized Protein Ydcj (Sf1787)
From Shigella Flexneri Which Includes Domain Duf1338.
Northeast Structural Genomics Consortium Target Sfr276
Length = 455
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 22 MPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVHNFLFGSLAGSVAALVTTPFDI 81
+ TL R Y VSY L + + H + +P A+L PF +
Sbjct: 79 LATLRRXFAIXGXYPVSYYDLSQAGVPVHSTAFRPI------------DDASLARNPFRV 126
Query: 82 VKTLRQIDVAENEIMK 97
+L ++++ ENEI++
Sbjct: 127 FTSLLRLELIENEILR 142
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 73 ALVTTPFD---IVKTLRQIDVAENEIMKSPPTRSQSTK 107
A+V +D +VKTLR +D AE + + PP S K
Sbjct: 530 AIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAK 567
>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
N-Acyl Homoserine Lactone Hydrolase Of Bacillus
Thuringiensis
Length = 250
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 68 AGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYRALFTGKH 127
AG A TP + +T + + E MK + K I G + L+T H
Sbjct: 110 AGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGH 169
Query: 128 SDGHE 132
S GH+
Sbjct: 170 SPGHQ 174
>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
Lactone Lactonase
pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
Quenching N-Acyl Homoserine Lactone Hydrolase
Length = 252
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 68 AGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYRALFTGKH 127
AG A TP + +T + + E MK + K I G + L+T H
Sbjct: 112 AGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGH 171
Query: 128 SDGHE 132
S GH+
Sbjct: 172 SPGHQ 176
>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
Lactone Hydrolase With The Product
N-Hexanoyl-L-Homoserine Bound At An Alternative Site
pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
At The Catalytic Metal Center
pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homocysteine
Bound To The Catalytic Metal Center
Length = 254
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 26/65 (40%)
Query: 68 AGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYRALFTGKH 127
AG A TP + +T + + E MK + K I G + L+T H
Sbjct: 114 AGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPGVQLLYTPGH 173
Query: 128 SDGHE 132
S GH+
Sbjct: 174 SPGHQ 178
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,620,798
Number of Sequences: 62578
Number of extensions: 230157
Number of successful extensions: 449
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 14
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)