RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10316
(254 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 62.3 bits (152), Expect = 7e-13
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 1 MKQALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRH 50
+ + + + G GL+KGL+P LLR P +AIY+ +YE LK +++
Sbjct: 47 ILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 51.5 bits (124), Expect = 7e-09
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 54 KQPSLVHNFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILN-- 111
S + + L G +AG++AA VT P D+VKT + S S+ K IL+
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTR---------LQSSAAGGSRKYKGILDCF 51
Query: 112 -QLLTSKGYRALFTG 125
++ +G R L+ G
Sbjct: 52 KKIYKEEGIRGLYKG 66
Score = 34.9 bits (81), Expect = 0.007
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 197 LAPRLIKVAPSCAIMITSYELGKRYFVSKN 226
L P L++VAP+ AI +YE K+ + K
Sbjct: 67 LLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 41.8 bits (98), Expect = 1e-04
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 17 LWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRH-QYSKQPSLVHNFLFGSLAGSVAALV 75
L K ++R++PF I + +E LK + ++SK+ + + + G LAG +A +
Sbjct: 137 LGKSYFVMIVREIPFDCIQYFLWETLKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGFL 196
Query: 76 TTPFDIVKTLRQI 88
TTP D++K+ RQI
Sbjct: 197 TTPVDVIKS-RQI 208
Score = 37.2 bits (86), Expect = 0.005
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 17 LWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVHNFLFGSLAGSVAALVT 76
L+ G++PTL+ VP SA ++ YE K + + +L + S+A A +V
Sbjct: 45 LYSGILPTLVGTVPASAFFYCFYELSKKLLTEYRENISKTNLY--LISTSIAEITACIVR 102
Query: 77 TPFDIVKTLRQI 88
PF+IVK Q+
Sbjct: 103 LPFEIVKQNMQV 114
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 30.9 bits (70), Expect = 0.56
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 5 LRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVH---- 60
R + + G LW+G ++R P A + + K + + Y+++
Sbjct: 59 FRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPK---YNQKTDFWKFFGV 115
Query: 61 NFLFGSLAGSVAALVTTPFDIVKTLRQIDVAEN 93
N L G LAG+ + L+ P D +T D+ +
Sbjct: 116 NILSGGLAGASSLLIVYPLDFARTRLASDIGKG 148
>gnl|CDD|233247 TIGR01047, nspC, carboxynorspermidine decarboxylase. This protein
is related to diaminopimelate decarboxylase. It is the
last enzyme in norspermidine biosynthesis by an unusual
pathway shown in Vibrio alginolyticus [Central
intermediary metabolism, Polyamine biosynthesis].
Length = 380
Score = 29.8 bits (67), Expect = 1.4
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 105 STKTILNQLLTSKGYRALFTGKHSDGHEGF-AGPS-SPPSQSYYDPCSSGAGTGAKPSPS 162
+ + N L YR GK+S G P S Y+PC + G +
Sbjct: 92 ADHIVFNSLAQWHRYRHKVQGKNSAVKLGLRINPEYSEVPTDLYNPCGRFSRLGVQAKDF 151
Query: 163 EEDG 166
EE
Sbjct: 152 EEVL 155
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 27.8 bits (62), Expect = 5.9
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 135 AGPSSPPSQSYYDPCSSGAGTGAKPSPSEEDGNWPISSPKDLNFPETIPEE 185
A S PSQS S + +P+ + + + +N P T P+
Sbjct: 396 AAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQA 446
>gnl|CDD|179518 PRK02975, PRK02975, putative common antigen polymerase;
Provisional.
Length = 450
Score = 27.7 bits (62), Expect = 6.4
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 21 LMPTLLRDVPFSAIYWVSYE-QLKASYIRRHQYSKQPSLVHNFLFGSLAGSVAALV 75
L+ LL F AIY+V+Y+ +L+ R ++P N + +L + L+
Sbjct: 71 LLQALLSATCFYAIYYVTYKTRLR---KRVADVPRRPLFTMNRVETNLTWVILMLI 123
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 27.5 bits (61), Expect = 8.4
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 69 GSVAALVTTPFDIVKTLR----QIDVAENEIMKSPPTRSQSTKTILNQLLT 115
G + F+ + L ID ++ P+ S + ++ QLLT
Sbjct: 318 GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLT 368
>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 27.8 bits (62), Expect = 8.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 191 EEHVVSLAPRLIKVAPSCAIMITSYELGKRYFVSKNTATL 230
++ V AP ++ PS A ++ S E RYF ++ A+L
Sbjct: 1037 QDRDVVRAPATMRAIPSLANLLKSEETIDRYFAAQALASL 1076
>gnl|CDD|220594 pfam10136, SpecificRecomb, Site-specific recombinase. Members of
this family of bacterial proteins are found in various
putative site-specific recombinase transmembrane
proteins.
Length = 647
Score = 27.2 bits (61), Expect = 9.5
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Query: 44 ASYIRRHQYSKQPSLVHNFLFGSLAGSVAALVT---TPFDI 81
A YI R+ L NF G L G A+ P D+
Sbjct: 526 ADYIERN-LG---GLAGNFSLGFLLGLTPAIGAFFGLPLDV 562
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.379
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,815,960
Number of extensions: 1181444
Number of successful extensions: 819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 25
Length of query: 254
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 159
Effective length of database: 6,723,972
Effective search space: 1069111548
Effective search space used: 1069111548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.2 bits)