RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10316
(254 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 91.2 bits (227), Expect = 7e-22
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 11/123 (8%)
Query: 3 QALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVHNF 62
+A +++ + G GLWKG P + R+ + V+Y+ +K + + H F
Sbjct: 149 EAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK-DTLLKANLMTDDLPCH-F 206
Query: 63 LFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYRAL 122
AG ++ +P D+VKT R M S + S +L +G RA
Sbjct: 207 TSAFGAGFCTTVIASPVDVVKT-R--------YMNSALGQYHSAGHCALTMLRKEGPRAF 257
Query: 123 FTG 125
+ G
Sbjct: 258 YKG 260
Score = 82.7 bits (205), Expect = 8e-19
Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
Query: 1 MKQALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVH 60
+ + ++++ G L+ GL+ L R + F+++ Y+ +K Y + S+ +
Sbjct: 50 VLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG---SEHAGIGS 106
Query: 61 NFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYR 120
L GS G++A V P D+VK Q R QST + +G R
Sbjct: 107 RLLAGSTTGALAVAVAQPTDVVKVRFQAQAR-----AGGGRRYQSTVEAYKTIAREEGIR 161
Query: 121 ALFTG 125
L+ G
Sbjct: 162 GLWKG 166
Score = 54.6 bits (132), Expect = 5e-09
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 3 QALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSL--VH 60
++++ G +KG MP+ LR ++ + +V+YEQLK + + +Q + P H
Sbjct: 243 HCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFHHHHH 302
Query: 61 N 61
+
Sbjct: 303 H 303
Score = 45.4 bits (108), Expect = 6e-06
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 58 LVHNFLFGSLAGSVAALVTTPFDIVKTLRQID-VAENEIMKSPPTRSQSTKTILNQLLTS 116
+ FL A +A L+T P D K QI ++ + + + + + ++ +
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 117 KGYRALFTG 125
+G R+L+ G
Sbjct: 61 EGPRSLYNG 69
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 86.5 bits (215), Expect = 3e-20
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 1 MKQALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVH 60
+ + + + G GL++G ++ + + A Y+ Y+ K K ++
Sbjct: 156 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD----PKNVHIIV 211
Query: 61 NFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYR 120
+++ +VA LV+ PFD V+ + K T ++ +G +
Sbjct: 212 SWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG----RKGADIMYTGTVDCWRKIAKDEGPK 267
Query: 121 ALFTG 125
A F G
Sbjct: 268 AFFKG 272
Score = 81.1 bits (201), Expect = 3e-18
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 6/127 (4%)
Query: 1 MKQALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRR--HQYSKQPSL 58
+ + + + GF W+G + ++R P A+ + ++ K ++
Sbjct: 53 IIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYF 112
Query: 59 VHNFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKG 118
N G AG+ + P D +T DV + + I G
Sbjct: 113 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD----G 168
Query: 119 YRALFTG 125
R L+ G
Sbjct: 169 LRGLYQG 175
Score = 49.6 bits (119), Expect = 2e-07
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 1 MKQALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLK 43
R + + G +KG +LR + A V Y+++K
Sbjct: 253 TVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEIK 294
Score = 38.8 bits (91), Expect = 0.001
Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 54 KQPSLVHNFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQL 113
+ S + +FL G +A +++ P + VK L Q+ A +I S + + + ++
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI--SAEKQYKGIIDCVVRI 60
Query: 114 LTSKGYRALFTG 125
+G+ + + G
Sbjct: 61 PKEQGFLSFWRG 72
Score = 27.2 bits (61), Expect = 5.3
Identities = 7/41 (17%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 189 VEEEHVVSL----APRLIKVAPSCAIMITSYELGKRYFVSK 225
+E+ +S +I+ P+ A+ + K+ F+
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGG 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.5 bits (125), Expect = 5e-08
Identities = 39/288 (13%), Positives = 81/288 (28%), Gaps = 102/288 (35%)
Query: 1 MKQALRSL-----IQYHGFTGLWKG-LMPTLLRDVPF-----SAIYWVSYEQLKASYIRR 49
++QAL L + G G K + + I+W++
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----------- 188
Query: 50 HQYSKQPSLVHNFLFGSLAGSVAALVTTPFDIVKTL----RQID---VAENEIMKSPPTR 102
+ +P +++ L QID + ++ + R
Sbjct: 189 --------------LKN--------CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 103 SQSTKTILNQLLTSKGY-RALF------TGKHSDGHEGFAGPSSPPSQSYYDP-C----- 149
S + L +LL SK Y L K + ++ C
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN---------------AFNLSCKILLT 271
Query: 150 ------SSGAGTGAKPSPSEEDGNWPISSPKDLNF--------PETIPEESSSVEEEHVV 195
+ S + + ++ + + P+ +P E V+
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--------VL 323
Query: 196 SLAPRLIK-VAPSCAIMITSYELGKRYFVSKNTATLQELMREQESREL 242
+ PR + +A S + +++ K K T ++ + E E
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Score = 40.2 bits (93), Expect = 5e-04
Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 34/160 (21%)
Query: 2 KQAL-RSLI-QYHGFTGL-WKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPS- 57
+ AL RS++ Y+ L+P L Y+ Y S+I H + +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------YF--Y-----SHIGHHLKNIEHPE 488
Query: 58 ---------LVHNFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKT 108
L FL + A I+ TL+Q+ + I + P +
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAW-NASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 109 ILNQLLTSKGYRALFTGKHSD-GHEGFAGPSSPPSQSYYD 147
IL+ L + L K++D ++ ++
Sbjct: 548 ILDFLPKIE--ENLICSKYTDLLRIAL----MAEDEAIFE 581
Score = 28.7 bits (63), Expect = 2.7
Identities = 18/158 (11%), Positives = 44/158 (27%), Gaps = 46/158 (29%)
Query: 20 GLMPTLLRDVPFSAIYW-------------VSYEQLKASYIRRHQY---------SKQPS 57
++ +RD + W S L+ + R+ + + P+
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPT 389
Query: 58 LVHNFLFGSLAGSVAALVTTPFDIVKTLRQIDVAEN---------EIMKSPPTRSQSTKT 108
++ + ++ + S +V +L + E+ E+ ++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKL-HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448
Query: 109 ILNQLLTSKGYRALFTGKHSDGHEGFAGPSSPPSQSYY 146
I++ Y K D P Y+
Sbjct: 449 IVDH------YNIP---KTFDSD----DLIPPYLDQYF 473
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 43/280 (15%), Positives = 72/280 (25%), Gaps = 120/280 (42%)
Query: 4 ALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYI-------RRHQYSKQP 56
+ R L HG L LL VP ++ + QL+ + +P
Sbjct: 5 STRPLTLSHG------SLEHVLL--VPTAS--FFIASQLQEQFNKILPEPTEGFAADDEP 54
Query: 57 S----LVHNFLFGSLAGSVAALVTTPFD-IVKT---------LRQIDV--AENEIMKSPP 100
+ LV FL G ++ V FD ++ L D+ ++++
Sbjct: 55 TTPAELVGKFL-GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 101 TRSQSTKTILNQLLTSKGYRALFTGKHSDGHEGFAGPSSPPSQSYYDPCSSGAGTGAKPS 160
T TK ++ ++Y
Sbjct: 114 TTLVKTKELI--------------------------------KNYITARIM--------- 132
Query: 161 PSEEDGNWPISSPKDLNFPETIPEESS---SVEEEHVVSLAPRLIKVAPSCAIM-----I 212
P S+ +V E + +L+ AI
Sbjct: 133 ---------------AKRPFDKKSNSALFRAVGEGNA-----QLV------AIFGGQGNT 166
Query: 213 TSY--ELGKRY---------FVSKNTATLQELMREQESRE 241
Y EL Y + + TL EL+R E
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Score = 28.5 bits (63), Expect = 2.4
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 11 YHGFTG-----LWKGLMPTLLRDVPFSAIYWVSYEQLKASYI 47
Y F G L + ++ + + W + Q KA++I
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 4.9
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 6/29 (20%)
Query: 190 EEEHVVSLAPRLIKV-----APSCAIMIT 213
E++ + L L K+ AP+ AI T
Sbjct: 18 EKQALKKLQASL-KLYADDSAPALAIKAT 45
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN;
1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A*
3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A*
2h8x_A*
Length = 363
Score = 27.1 bits (61), Expect = 5.9
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 156 GAKPSPSEEDGNWPISSPKDLNFPETIPE 184
G +++ W +P + F +P+
Sbjct: 115 GDDHIAADDTRGWETIAPSAIAFGAHLPK 143
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 26.9 bits (60), Expect = 7.1
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 94 EIMKSPPTRSQSTKTILNQLLTSKGYRALF 123
+I+++PP S+ + I L + R
Sbjct: 132 KILRTPPISSEIIERIRRTLRKNSKERKKI 161
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 26.9 bits (60), Expect = 7.3
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 112 QLLTSKGYRALFTGK-HSDGHEGFAGPSSPPSQSYYDP 148
L + GY A+ GK H G P ++ + DP
Sbjct: 104 SLFSESGYEAVHFGKTHDMGSLRGFKHKEPVAKPFTDP 141
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein
structure initiative; 2.20A {Thermoplasma acidophilum
dsm 1728} SCOP: a.4.5.28 b.43.5.2
Length = 230
Score = 26.6 bits (58), Expect = 8.7
Identities = 8/54 (14%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 186 SSSVEEEHVVSLAPRLIKVAPSCAIMITSYELGKRYFVSKNTAT--LQELMREQ 237
S ++++ ++ S +TS +L +S+ +A+ + +L +
Sbjct: 2 SLETDDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNG 55
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 9.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 8/37 (21%)
Query: 2 KQALRSLIQY----HGFTGLWKGLMPTLLRDVPFSAI 34
KQ + +LI++ GL G + +PF+AI
Sbjct: 543 KQDVEALIEFIYDTEKNGGL--GWDLDAI--IPFAAI 575
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.130 0.379
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,760,422
Number of extensions: 211201
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 21
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (25.2 bits)