RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10316
         (254 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 53.6 bits (127), Expect = 4e-09
 Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 1   MKQALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQL 42
                R + +  G    +KG    +LR +   A   V Y+++
Sbjct: 252 TVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEI 292



 Score = 48.2 bits (113), Expect = 3e-07
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 54  KQPSLVHNFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRS 103
           +  S + +FL G +A +++     P + VK L Q+  A  +I      + 
Sbjct: 2   QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKG 51



 Score = 40.9 bits (94), Expect = 8e-05
 Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 8/125 (6%)

Query: 1   MKQALRSLIQYHGFTGLWKGLMPTLLRDVPFSAIYWVSYEQLKASYIRRHQYSKQPSLVH 60
           +   +  + +  G  GL++G   ++   + + A Y+  Y+             K   ++ 
Sbjct: 155 LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDT----AKGMLPDPKNVHIIV 210

Query: 61  NFLFGSLAGSVAALVTTPFDIVKTLRQIDVAENEIMKSPPTRSQSTKTILNQLLTSKGYR 120
           +++      +VA LV+ PFD V+    +        K        T     ++   +G +
Sbjct: 211 SWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR----KGADIMYTGTVDCWRKIAKDEGPK 266

Query: 121 ALFTG 125
           A F G
Sbjct: 267 AFFKG 271


>d1mlwa_ d.178.1.1 (A:) Tryptophan hydroxylase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 290

 Score = 27.4 bits (61), Expect = 1.4
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 186 SSSVEEEHVVSLAPRLIKVAPSCAIMITSY---ELGKRYFVSKNTATLQELMRE 236
           SS  E +H +S   ++    P                 YFVS++    +E MRE
Sbjct: 233 SSISELKHALSGHAKVKPFDPK-ITCKQECLITTFQDVYFVSESFEDAKEKMRE 285


>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 273

 Score = 26.5 bits (58), Expect = 2.9
 Identities = 12/98 (12%), Positives = 33/98 (33%), Gaps = 17/98 (17%)

Query: 166 GNWPISSPKDLNFPETIPEESSSVEEEHVVSLAPRLIKVAPSCAIMITSYELGKRY---- 221
           G WP  +P +++    + +     +  ++   + R ++   +    +   E  +      
Sbjct: 129 GYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQ 188

Query: 222 -----------FVSKNTATLQELMRE--QESRELNRSM 246
                      F   +  + +E+      E  EL R++
Sbjct: 189 VSLFQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTL 226


>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS)
           {Escherichia coli [TaxId: 562]}
          Length = 291

 Score = 25.8 bits (56), Expect = 5.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 40  EQLKASYIRRHQYSKQPSLVHNFLFGSLAGSVAALV 75
            +L ASY+      K P ++H  + GS+   +  L 
Sbjct: 250 SRLSASYVGEDNERKVPVMIHRAILGSMERFIGILT 285


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0563    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 909,155
Number of extensions: 40125
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 6
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)