BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10320
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 127/191 (66%), Positives = 149/191 (78%), Gaps = 6/191 (3%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
MVG++VY+GGLPYGVRERDLE+F KGYGR RD+++KNG+GFVEFEDYRDADDAVYELNGK
Sbjct: 1 MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD------DRYGPPTRSDH 114
LLGERV VE A+G R R R G ++++ RYGPP R+++
Sbjct: 61 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 120
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
RLIVENLSSRVSWQDLKD+MRQ GEV YADAHK+ RNEGVVEF S SDMK A++KLD+ E
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDDTE 180
Query: 175 LNGRRIRLIED 185
LNGRRI L+ED
Sbjct: 181 LNGRRIHLVED 191
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 241 bits (615), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 124/185 (67%), Positives = 144/185 (77%), Gaps = 12/185 (6%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y RERD+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 65 ERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
ERV VE A+G D S GR GYG YR R G D+YGPPTR+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDGSYGSGRSGYG-YR----RSGR-----DKYGPPTRTEYRLIVENLS 112
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
SR SWQDLKD+MRQ GEV YADAHK +NEGV+EF S SDMK+AL+KLD E+NGR+IRL
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
Query: 183 IEDKP 187
+EDKP
Sbjct: 173 VEDKP 177
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 239 bits (609), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/185 (65%), Positives = 144/185 (77%), Gaps = 12/185 (6%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y RERD+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD--DRYGPPTRSDHRLIVENLS 122
ERV VE A+G R YGS R+ G+G+ R D+YGPPTR+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDG-----SYGSGRS-----GYGYRRSGRDKYGPPTRTEYRLIVENLS 112
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
SR SWQDLKD+MRQ GEV YADAHK +NEGV+EF S SDMK+AL+KLD E+NGR+IRL
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
Query: 183 IEDKP 187
+EDKP
Sbjct: 173 VEDKP 177
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 120/184 (65%), Positives = 137/184 (74%), Gaps = 2/184 (1%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ +V LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSR 124
ERV VE A+G R +R YGS D+YGPP R+++RLIVENLSSR
Sbjct: 63 ERVIVEHARGPRR--DRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENLSSR 120
Query: 125 VSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184
SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IRLIE
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE 180
Query: 185 DKPR 188
DKPR
Sbjct: 181 DKPR 184
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 223 bits (567), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/184 (64%), Positives = 135/184 (73%), Gaps = 2/184 (1%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ + LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSR 124
ERV VE A+G R +R YGS D+YGPP R++ RLIVENLSSR
Sbjct: 63 ERVIVEHARGPRR--DRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENLSSR 120
Query: 125 VSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184
SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IRLIE
Sbjct: 121 CSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIRLIE 180
Query: 185 DKPR 188
DKPR
Sbjct: 181 DKPR 184
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/184 (58%), Positives = 130/184 (70%), Gaps = 6/184 (3%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A+ R R + + PR D R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN------DRRNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/184 (58%), Positives = 130/184 (70%), Gaps = 6/184 (3%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A+ R R + + PR D R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN------DRRNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 200 bits (509), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 108/184 (58%), Positives = 130/184 (70%), Gaps = 6/184 (3%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A+ R R + + PR D R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN------DRRNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/184 (45%), Positives = 127/184 (69%), Gaps = 3/184 (1%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
+VYIG LP +RD+E F +GYG++ DVI+KNGFGFV+F+D RDADDAV++LNGK L
Sbjct: 2 VRVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELC 61
Query: 64 GERVTVEIA-KGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
GERV +E + + ++ER G+ R P R+G +RY P + RL+++NLS
Sbjct: 62 GERVILEFPRRKVGYNEERSGSGFRG-REPTFRKGGERQFSNRYSRPCSTRFRLVIDNLS 120
Query: 123 SRVSWQDLKDFMRQVG-EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
+R SWQD+KD +R++G E Y++AHKR+ N+ +V F S D++ A++KL +LNGR+++
Sbjct: 121 TRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLK 180
Query: 182 LIED 185
++
Sbjct: 181 CTDE 184
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 169 bits (427), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 131/211 (62%), Gaps = 30/211 (14%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKS 61
+ ++YIG L V E+D+E F +GYG+IRDV+LKNGFGFVEF+D RDA+DAV++LNGK
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 62 LLGERVTVEIAK----------------------GIDRSQERGRRGYGSYRAPPPRRGWG 99
L GERV ++ +K GR + Y PPR
Sbjct: 61 LGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPR---- 116
Query: 100 HDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAHKRHRNEGVVEFE 158
R+ RYG P + HR++VENLSSR+SWQDLKD +R+ G E YA+AHKR NE ++ F
Sbjct: 117 --RESRYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRP-NEALLCFA 173
Query: 159 SSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189
+ SD+K+ ++K D +LNGR+I++I+D G
Sbjct: 174 TPSDLKRCIEKCDGMDLNGRKIKMIDDSQAG 204
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 103/185 (55%), Gaps = 16/185 (8%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M T++++G +P D+ F KGYG+I D L NGFGFVE ED RDA D V + GK
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
+G R+ VE A+G R +E R S +Y P R+ RLIVEN
Sbjct: 61 EFMGSRIVVEPARGERRRRENFRESAAS----------------KYPRPRRTGFRLIVEN 104
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LS VSWQDLKD MR+ GE + DAH+ + GVVEF + DM+ AL L+ + G+ +
Sbjct: 105 LSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAV 164
Query: 181 RLIED 185
L ED
Sbjct: 165 TLRED 169
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 121 bits (304), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 97/177 (54%), Gaps = 27/177 (15%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELNG 59
++Y+G LP VRE+DLE YGRIR++ LKN F FV FED RDA+DA+Y NG
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
R+ VE R YG R GW R R GPPTR SD R++V
Sbjct: 75 YDYGQCRLRVEFP-----------RAYGG------RGGW--PRASRNGPPTRRSDFRVLV 115
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL 175
L SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD+ +
Sbjct: 116 SGLPPSGSWQDLKDHMREAGDVCYADVQK--DGMGMVEYLRKEDMEYALRKLDDTKF 170
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 120 bits (301), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 79/177 (44%), Positives = 97/177 (54%), Gaps = 27/177 (15%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELNG 59
++Y+G LP VRE+DLE YGRIR++ LKN F FV FED RDA+DA+Y NG
Sbjct: 16 RIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 75
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
R+ VE R YG R GW R R GPPTR SD R++V
Sbjct: 76 YDYGQCRLRVEFP-----------RTYGG------RGGW--PRGARNGPPTRRSDFRVLV 116
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL 175
L SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD+ +
Sbjct: 117 SGLPPSGSWQDLKDHMREAGDVCYADVQK--DGMGMVEYLRKEDMEYALRKLDDTKF 171
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 84/210 (40%), Positives = 105/210 (50%), Gaps = 30/210 (14%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAP----PPRRGWGHDRDDRYGPPTRSDH 114
G G R+ VE + + G G G PP R RS++
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSR--------------RSEY 121
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
R+IV L SWQDLKD MR+ G+VCYAD + GVVEF DM A+ KLDN +
Sbjct: 122 RVIVSGLPPSGSWQDLKDHMREAGDVCYADVFR--DGTGVVEFVRKEDMTYAVRKLDNTK 179
Query: 175 LNGRR-----IRLIEDKPRGGGRGRSRSSS 199
IR+ D PR GRSRS S
Sbjct: 180 FRSHEGETAYIRVKVDGPRSPSYGRSRSRS 209
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 75/178 (42%), Positives = 95/178 (53%), Gaps = 19/178 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 15 CRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 74
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLI 117
G G R+ VE + G G G RYGPP+R S++R+I
Sbjct: 75 GYDYDGYRLRVEFPRSGRGGGRGGGGGGGV-----------GAPRGRYGPPSRRSEYRVI 123
Query: 118 VENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL 175
V L SWQDLKD MR+ G+VCYAD + GVVEF DM A+ KLDN +
Sbjct: 124 VSGLPPSGSWQDLKDHMREAGDVCYADVFR--DGTGVVEFVRKEDMTYAVRKLDNTKF 179
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/176 (40%), Positives = 91/176 (51%), Gaps = 25/176 (14%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELNG 59
++Y+G LP VRE+DLE YGRIR++ LKN F FV FED RDA+DA+Y NG
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 74
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVE 119
R+ VE R+ R PP R RSD R++V
Sbjct: 75 YDYGQCRLRVEFP----RTYGGRGGWPRGGRNGPPTR--------------RSDFRVLVS 116
Query: 120 NLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL 175
L SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD+ +
Sbjct: 117 GLPPSGSWQDLKDHMREAGDVCYADVQK--DGVGMVEYLRKEDMEYALRKLDDTKF 170
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/176 (39%), Positives = 97/176 (55%), Gaps = 9/176 (5%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGK 60
VY+G LP +RER++E YG + + LK G+ FVEF+D RDA+DA++ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
G R+ VE+A G RS + R + G G GP RS+ R++V
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTRGSFNGGGR---GGGRGRGDGGSRGPSRRSEFRVLVTG 125
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHR-NEGVVEFESSSDMKKALDKLDNAEL 175
L S SWQDLKD MR+ G+VC++ ++ R GVV++ DMK AL KLD+ E
Sbjct: 126 LPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEF 181
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/186 (41%), Positives = 99/186 (53%), Gaps = 16/186 (8%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDD--------RYGPPT 110
G G R+ VE + + RG G G G G RYGPP+
Sbjct: 76 GYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPS 135
Query: 111 R-SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDK 169
R S++R++V L SWQDLKD MR+ G+VCYAD + GVVEF DM A+ K
Sbjct: 136 RRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFR--DGTGVVEFVRKEDMTYAVRK 193
Query: 170 LDNAEL 175
LDN +
Sbjct: 194 LDNTKF 199
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 107 bits (268), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 93/177 (52%), Gaps = 7/177 (3%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 15 CRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARD 74
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIV 118
G G R+ VE + G G G G G R P RS++R+IV
Sbjct: 75 GYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIV 134
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL 175
L SWQDLKD MR+ G+VCYAD + GVVEF DM A+ KLDN +
Sbjct: 135 SGLPPSGSWQDLKDHMREAGDVCYADVFR--DGTGVVEFVRKEDMTYAVRKLDNTKF 189
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 94/181 (51%), Gaps = 25/181 (13%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAP----PPRRGWGHDRDDRYGPPTRSDH 114
G G R+ VE + + G G G PP R RS++
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSR--------------RSEN 121
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
R++V L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 122 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--DGTGVVEFVRKEDMTYAVRKLDNTK 179
Query: 175 L 175
Sbjct: 180 F 180
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 94/181 (51%), Gaps = 25/181 (13%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAP----PPRRGWGHDRDDRYGPPTRSDH 114
G G R+ VE + + G G G PP R RS++
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSR--------------RSEN 121
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
R++V L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 122 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--DGTGVVEFVRKEDMTYAVRKLDNTK 179
Query: 175 L 175
Sbjct: 180 F 180
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 94/181 (51%), Gaps = 25/181 (13%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAP----PPRRGWGHDRDDRYGPPTRSDH 114
G G R+ VE + + G G G PP R RS++
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSR--------------RSEN 121
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
R++V L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 122 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--DGTGVVEFVRKEDMTYAVRKLDNTK 179
Query: 175 L 175
Sbjct: 180 F 180
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 94/181 (51%), Gaps = 25/181 (13%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAP----PPRRGWGHDRDDRYGPPTRSDH 114
G G R+ VE + + G G G PP R RS++
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSR--------------RSEN 121
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
R++V L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 122 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--DGTGVVEFVRKEDMTYAVRKLDNTK 179
Query: 175 L 175
Sbjct: 180 F 180
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/181 (39%), Positives = 94/181 (51%), Gaps = 25/181 (13%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 16 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 75
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAP----PPRRGWGHDRDDRYGPPTRSDH 114
G G R+ VE + + G G G PP R RS++
Sbjct: 76 GYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSR--------------RSEN 121
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
R++V L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 122 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--DGTGVVEFVRKEDMTYAVRKLDNTK 179
Query: 175 L 175
Sbjct: 180 F 180
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 100/191 (52%), Gaps = 11/191 (5%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG----FGFVEFEDYRDADDAVYELNGK 60
KVY+G LP VRE+++E YGRI+ V +K+G F FVEFED+RDA+DAV +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
G R+ VE +G+ GR G GP R+ +R+IVE
Sbjct: 70 EFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEG 129
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRR- 179
L SWQDLKD MR G+VCYAD + GVVEF D+K A+ KLD+ +
Sbjct: 130 LPPTGSWQDLKDHMRDAGDVCYADVARD--GTGVVEFTRYEDVKYAVRKLDDTKFRSHEG 187
Query: 180 ----IRLIEDK 186
IR+ ED
Sbjct: 188 ETAYIRVREDN 198
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 92.0 bits (227), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 61/79 (77%), Gaps = 2/79 (2%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
++Y+G +PY RERD+E+F+KGYG+I ++ +K GF FV+FED RDA+DA ++L+GK++ G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 65 E--RVTVEIAKGIDRSQER 81
R+ VE+A+G R +R
Sbjct: 63 SSMRLVVEMARGKPRGNDR 81
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
RL + + +D++ F++ G++ V+FE S D + A LD
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKY---GFAFVDFEDSRDAEDACHDLDGKT 59
Query: 175 LNGRRIRLIEDKPRGGGRGRSR 196
+ G +RL+ + RG RG R
Sbjct: 60 MEGSSMRLVVEMARGKPRGNDR 81
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
T++Y+G L R RDLE+ YGR+RDV +K + FVEF D RDADDA Y L+G+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 64 GERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRG 97
G R+TVE ++G RG R GS R PPP G
Sbjct: 71 GSRITVEASRGA----PRGSRDNGS-RGPPPGSG 99
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 103 DDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSD 162
DDRYG RL V LSSR +DL+ + G V D R+ VEF D
Sbjct: 5 DDRYGN-----TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDM---KRDYAFVEFSDPRD 56
Query: 163 MKKALDKLDNAELNGRRIRLIEDKPRGGGRGRSRSSSSR 201
A LD + +G RI + + RG RG SR + SR
Sbjct: 57 ADDARYYLDGRDFDGSRITV--EASRGAPRG-SRDNGSR 92
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis
thaliana GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
T++Y+G L R RDLE+ YGR+RDV +K + FVEF D RDADDA + L+G+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 64 GERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRG 97
G R+TVE ++G RG R + S R PPP G
Sbjct: 71 GSRITVEFSRGA----PRGSRDFDS-RGPPPGAG 99
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 103 DDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSD 162
DDRYG RL V LSSR +DL+ + G V D R+ VEF D
Sbjct: 5 DDRYGN-----TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDM---KRDYAFVEFGDPRD 56
Query: 163 MKKALDKLDNAELNGRRIRL 182
A LD + +G RI +
Sbjct: 57 ADDARHYLDGRDFDGSRITV 76
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 27/178 (15%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGE 65
V++G Y R+ DLE+ YGR+ V +K+G+ FV FED RDA+DA+ +L+ E
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 66 --RVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSS 123
R++VE AKG ERG R G +AP + PT++ L V N
Sbjct: 64 KRRLSVEWAKG-----ERG-RPRGDAKAPSNLK------------PTKT---LFVINFDP 102
Query: 124 -RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
R D++ G+V + RN V+FE+ D KAL+ +++ R +
Sbjct: 103 IRTKEHDIEKHFEPYGKVTNV---RIRRNFSFVQFETQEDATKALEATQRSKILDRVV 157
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 14/99 (14%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G+
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWG 99
+L G RV VE++ G RS+ RG PPP WG
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRG---------PPP--SWG 97
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 14/99 (14%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G+
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWG 99
+L G RV VE++ G RS+ RG PPP WG
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRG---------PPP--SWG 97
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 58/99 (58%), Gaps = 14/99 (14%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G+
Sbjct: 10 CKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWG 99
+L G RV VE++ G RS+ RG PPP WG
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRG---------PPP--SWG 97
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 61 SLLGERVTVEIAKGIDR 77
+ G RV VE++ G+ R
Sbjct: 100 VICGSRVRVELSTGMPR 116
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDR 77
+ G RV VE++ G+ R
Sbjct: 71 VICGSRVRVELSTGMPR 87
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDR 77
+ G RV VE++ G+ R
Sbjct: 71 VICGSRVRVELSTGMPR 87
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 26/189 (13%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-------GFGFVEFEDYRDADDAVYEL 57
+VY+G L Y VR +L++F+ G + + + N G +E+ +A A+ L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 58 NGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLI 117
+ + +G V I +E+ R +GS P G D + D +L
Sbjct: 138 SNQKFMGRLVY------IREDREQNAR-FGSSSVSPSASSNGKD--------SEPDRQLF 182
Query: 118 VENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNA 173
V NL V WQDLKD RQ G V AD R R G+V S + A+ L N
Sbjct: 183 VGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNT 242
Query: 174 ELNGRRIRL 182
+ GR + +
Sbjct: 243 DFMGRTLEV 251
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGR-IRDVILKN------GFGFVEFEDYRDADDAVYEL 57
++++G LPY VR +DL+ + G IR I N G G V ++A A+ L
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQML 239
Query: 58 NGKSLLGERVTVEIAKGIDRSQERGRRGYGS----YRAPP-----------PRRGWGHDR 102
+ +G + V + DR + Y + Y P P G
Sbjct: 240 HNTDFMGRTLEVRL----DRFAHHKSKPYSTHGNGYTFPAEMQMTTSSTYLPMLGANTQV 295
Query: 103 DDR------YGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA----DAHKRHRNE 152
+D +GP + + V NL S ++L D +G V A + R +
Sbjct: 296 EDLVYHAYPHGPCSDC---IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGF 352
Query: 153 GVVEFESSSDMKKALDKLDNAELNGRRIRL 182
GVV+FE+ +D +++KL+ GR ++L
Sbjct: 353 GVVQFENENDAASSIEKLNGYRYGGRPLQL 382
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA----HKRHRNEGVVEFESSSDMKK 165
T+ + R+ V NLS +V W +LK+FM QVG V + + + ++E+ ++ + +
Sbjct: 73 TQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEART 132
Query: 166 ALDKLDNAELNGRRIRLIEDK 186
A+ L N + GR + + ED+
Sbjct: 133 AIKTLSNQKFMGRLVYIREDR 153
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 45/72 (62%), Gaps = 3/72 (4%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGK 60
KVY+GGLP ++LE+ +GRIR V + GF FVE++D RDA+DAV L+G
Sbjct: 3 AKVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 61 SLLGERVTVEIA 72
+ G R VE++
Sbjct: 63 RICGVRARVELS 74
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+NGKS+ G ++ V+ A ++ RG RG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDK 169
+L V LS + Q L+ + G++ K R R G V FE+ D K A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 170 LDNAELNGRRIRL 182
++ ++GR+IR+
Sbjct: 67 MNGKSVDGRQIRV 79
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+NGKS+ G ++ V+ A ++ RG RG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDK 169
+L V LS + Q L+ + G++ K R R G V FE+ D K A+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 170 LDNAELNGRRIRL 182
++ ++GR+IR+
Sbjct: 67 MNGKSVDGRQIRV 79
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+NGKSL G+ + VE A S E GRRG
Sbjct: 69 MNGKSLDGKAIKVEQA--TKPSFESGRRG 95
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 48/89 (53%), Gaps = 10/89 (11%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+NGKSL G+ + VE A S E GRRG
Sbjct: 69 MNGKSLDGKAIKVEQA--TKPSFESGRRG 95
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+NGKS+ G ++ V+ A ++ RG RG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDK 169
+L V LS + Q L+ + G++ K R R G V FE+ D K A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 170 LDNAELNGRRIRL 182
++ ++GR+IR+
Sbjct: 67 MNGKSVDGRQIRV 79
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+NGKS+ G ++ V+ A ++ RG RG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDK 169
+L V LS + Q L+ + G++ K R R G V FE+ D K A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 170 LDNAELNGRRIRL 182
++ ++GR+IR+
Sbjct: 67 MNGKSVDGRQIRV 79
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 8/89 (8%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+NGKS+ G ++ V+ A ++ RG RG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRG 95
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDK 169
+L V LS + Q L+ + G++ K R R G V FE+ D K A+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 170 LDNAELNGRRIRL 182
++ ++GR+IR+
Sbjct: 67 MNGKSVDGRQIRV 79
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 86/196 (43%), Gaps = 34/196 (17%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN-------GFGFVEFEDYRDADDAV 54
G ++Y+G LP+ + L + G + +V I+ + GF FV +A +A+
Sbjct: 113 GGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAI 172
Query: 55 YELNGKSLLGERVTV---EIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR 111
+G + G V V E+ +G G R S + +G+
Sbjct: 173 RLFDGSQVGGRTVKVNFPEVPRG-------GEREVMSAKIRSTYQGF-----------VD 214
Query: 112 SDHRLIVENLSSRVSWQDLKD-FMRQVG----EVCYADAHKRHRNEGVVEFESSSDMKKA 166
S H+L V NLS ++ Q L+D F Q G +V Y + R R G + F S+ M A
Sbjct: 215 SPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSA 274
Query: 167 LDKLDNAELNGRRIRL 182
LD ++ EL GR +RL
Sbjct: 275 LDTMNEVELEGRPLRL 290
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVG-----EVCYADAHKRHRNEGVVEFESSSDMKKALDK 169
RL V NL ++ L + + G E+ Y R R V S + K+A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 170 LDNAELNGRRIRL-IEDKPRGGGR 192
D +++ GR +++ + PRGG R
Sbjct: 175 FDGSQVGGRTVKVNFPEVPRGGER 198
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAV 54
T ++I + R DL + YG I DV + GF +V+FED RDA+DA+
Sbjct: 9 NTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDAL 68
Query: 55 YELNGKSLLGERVTVEIAKG 74
Y LN K + G ++ ++ A+G
Sbjct: 69 YNLNRKWVCGRQIEIQFAQG 88
>sp|P38922|HRB1_YEAST Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=HRB1 PE=1 SV=2
Length = 454
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 30/187 (16%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRI--RDVIL----KNGFGFVEFEDYRDADDAVYELNG 59
+++G L Y DL +F G++ D+I G G VEF + D D A+ + +G
Sbjct: 163 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAIRQYDG 222
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGP--PTRSDHRLI 117
+ ++ V PPP + G R H +I
Sbjct: 223 AFFMDRKIFVRQDN------------------PPPSNNIKERKALDRGELRHNRKTHEVI 264
Query: 118 VENLSSRVSWQDLKDFMRQVGEVCYADAHKR----HRNEGVVEFESSSDMKKALDKLDNA 173
V+NL + V+WQ LKD ++ G V +AD G V F D+ +A++K +
Sbjct: 265 VKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNGY 324
Query: 174 ELNGRRI 180
+ G +
Sbjct: 325 SIEGNVL 331
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYAD---AHKRHRNEGVVEFESSSDMKKALDKLDN 172
+ V NL+ + +DL +F Q+G+V AD + HR G VEF +S D+ +A+ + D
Sbjct: 163 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAIRQYDG 222
Query: 173 AELNGRRIRLIEDKP 187
A R+I + +D P
Sbjct: 223 AFFMDRKIFVRQDNP 237
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELN 58
+Y LP+ + DL + G++ + L+ G VE+++ DAD + LN
Sbjct: 378 IYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVCIERLN 437
Query: 59 GKSLLGERVTVEIAK 73
+ G + + AK
Sbjct: 438 NYNYGGCDLDISYAK 452
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGR+ +V+L GF FV FE DA DA E
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 57 LNGKSLLGERVTVEIA 72
LNGK+L G+ + VE A
Sbjct: 69 LNGKALDGKPIKVEQA 84
>sp|P92965|RSP40_ARATH Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana
GN=RSP40 PE=1 SV=2
Length = 350
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSL--L 63
V+ G Y RE DLE+ + YG++ V +K GF FV ED RDA+DA+ L+
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 64 GERVTVEIAK---GIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
G R+ VE K G D+ G R S P S ++
Sbjct: 64 GRRLRVEWTKSERGGDKRSGGGSRRSSSSMRP-------------------SKTLFVINF 104
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
+ +DL+ G++ + RN +++E+ D +ALD +N++L + I
Sbjct: 105 DADNTRTRDLEKHFEPYGKIVNV---RIRRNFAFIQYEAQEDATRALDASNNSKLMDKVI 161
Query: 181 ----RLIEDKPRGGG 191
+ +D RG G
Sbjct: 162 SVEYAVKDDDARGNG 176
>sp|Q62826|HNRPM_RAT Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus
GN=Hnrnpm PE=1 SV=4
Length = 690
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 56 GGNRFEPYANPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 114
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 115 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 146
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA---HKRHRNEGVVEFESSSDMKKA 166
R ++ V NL +W+ LKD + G V YAD + + + GVV+FES ++A
Sbjct: 609 ARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERA 668
Query: 167 LDKLDNAELNGRRI 180
++ +L+GR I
Sbjct: 669 CRMMNGMKLSGREI 682
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLD 171
+ V NL +V W+ LK+ G V AD + + R G V FE S + +A+ +
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Query: 172 NAELNGRRIRLIEDK---PRG 189
L R + + D+ P+G
Sbjct: 226 GQLLFDRPMHVKMDERALPKG 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,890,054
Number of Sequences: 539616
Number of extensions: 4393394
Number of successful extensions: 45866
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 952
Number of HSP's that attempted gapping in prelim test: 22822
Number of HSP's gapped (non-prelim): 11021
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)