Query psy10320
Match_columns 262
No_of_seqs 242 out of 2144
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 23:27:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10320.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10320hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.5E-33 3.3E-38 228.6 19.7 155 3-189 107-276 (346)
2 TIGR01645 half-pint poly-U bin 100.0 4.7E-31 1E-35 224.8 19.9 165 3-188 107-284 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.3E-29 2.8E-34 210.3 23.4 188 2-189 88-350 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.6E-30 7.9E-35 213.5 19.7 154 3-188 3-171 (352)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.7E-29 2.1E-33 211.4 22.8 185 3-188 275-480 (481)
6 KOG0109|consensus 100.0 2.6E-30 5.7E-35 194.7 11.2 150 2-188 1-150 (346)
7 TIGR01622 SF-CC1 splicing fact 100.0 4.8E-29 1E-33 213.6 19.8 163 3-186 89-264 (457)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 1.7E-28 3.8E-33 208.9 19.5 185 3-190 58-309 (578)
9 KOG0148|consensus 100.0 7.6E-29 1.7E-33 185.1 15.0 168 5-189 64-239 (321)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.9E-28 1.5E-32 206.2 20.9 166 3-188 2-174 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.8E-28 1.5E-32 209.2 21.0 181 3-188 175-375 (509)
12 TIGR01628 PABP-1234 polyadenyl 100.0 3.1E-28 6.8E-33 213.1 18.7 155 4-188 1-167 (562)
13 KOG0117|consensus 100.0 5.8E-28 1.3E-32 192.0 16.9 185 3-190 83-333 (506)
14 TIGR01628 PABP-1234 polyadenyl 100.0 1.7E-27 3.7E-32 208.5 17.4 172 3-188 178-364 (562)
15 KOG0131|consensus 100.0 1.7E-27 3.7E-32 168.0 12.9 159 3-192 9-181 (203)
16 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.5E-26 3.3E-31 200.8 20.1 180 3-186 295-500 (509)
17 KOG0105|consensus 99.9 1.6E-25 3.5E-30 158.3 20.3 167 3-177 6-177 (241)
18 KOG0106|consensus 99.9 1E-26 2.3E-31 172.3 13.4 165 3-182 1-165 (216)
19 TIGR01622 SF-CC1 splicing fact 99.9 2.3E-25 4.9E-30 190.9 22.2 184 3-186 186-446 (457)
20 KOG0144|consensus 99.9 9.6E-27 2.1E-31 184.3 12.5 157 4-191 35-209 (510)
21 KOG0145|consensus 99.9 6.4E-26 1.4E-30 168.7 13.3 152 4-187 42-208 (360)
22 KOG0127|consensus 99.9 2.3E-25 5E-30 181.3 16.3 183 1-189 3-197 (678)
23 KOG0145|consensus 99.9 3.1E-24 6.8E-29 159.8 16.2 184 3-186 127-356 (360)
24 KOG0107|consensus 99.9 4.3E-24 9.3E-29 149.9 15.7 75 2-76 9-86 (195)
25 KOG0127|consensus 99.9 6.2E-24 1.3E-28 173.1 18.1 185 4-188 118-378 (678)
26 KOG0124|consensus 99.9 1.2E-25 2.5E-30 174.9 7.1 164 2-186 112-288 (544)
27 KOG0107|consensus 99.9 4E-23 8.7E-28 145.1 14.6 76 113-188 10-85 (195)
28 KOG0110|consensus 99.9 1.5E-23 3.2E-28 175.9 13.3 162 3-187 515-692 (725)
29 KOG4206|consensus 99.9 1.7E-21 3.6E-26 143.2 17.2 182 5-186 11-220 (221)
30 KOG0146|consensus 99.9 1.1E-22 2.5E-27 152.1 11.1 188 4-191 20-368 (371)
31 KOG0123|consensus 99.9 7E-22 1.5E-26 161.5 15.7 144 4-188 2-153 (369)
32 TIGR01645 half-pint poly-U bin 99.9 1.2E-19 2.7E-24 155.4 22.0 72 4-75 205-284 (612)
33 KOG0123|consensus 99.9 6.8E-21 1.5E-25 155.7 13.7 159 4-187 77-245 (369)
34 KOG0144|consensus 99.9 1.3E-20 2.7E-25 149.9 13.3 77 113-189 424-505 (510)
35 KOG0147|consensus 99.9 5.7E-21 1.2E-25 156.3 11.5 181 5-185 280-525 (549)
36 KOG4207|consensus 99.8 3.9E-20 8.5E-25 133.4 11.8 71 3-73 13-91 (256)
37 KOG4205|consensus 99.8 2.1E-20 4.6E-25 147.6 11.4 162 3-192 6-180 (311)
38 KOG0147|consensus 99.8 4.8E-21 1E-25 156.8 7.4 162 4-184 180-354 (549)
39 PLN03134 glycine-rich RNA-bind 99.8 2.9E-19 6.2E-24 127.8 13.3 76 2-77 33-116 (144)
40 KOG0148|consensus 99.8 1.4E-19 3.1E-24 135.7 10.4 133 3-189 6-143 (321)
41 KOG4676|consensus 99.8 9.4E-21 2E-25 148.7 4.1 173 4-178 8-216 (479)
42 KOG4207|consensus 99.8 7E-19 1.5E-23 127.0 12.7 74 113-186 13-91 (256)
43 KOG1457|consensus 99.8 5.2E-18 1.1E-22 124.0 14.2 172 4-175 35-273 (284)
44 KOG1190|consensus 99.8 2.7E-17 5.9E-22 130.2 17.2 184 3-187 297-490 (492)
45 TIGR01648 hnRNP-R-Q heterogene 99.8 5.7E-18 1.2E-22 145.0 12.7 134 4-141 234-369 (578)
46 KOG4211|consensus 99.8 2.6E-17 5.5E-22 133.5 15.4 155 5-183 12-177 (510)
47 KOG0110|consensus 99.8 1.9E-17 4.1E-22 139.6 15.1 184 3-186 385-596 (725)
48 KOG1548|consensus 99.8 8.7E-17 1.9E-21 124.9 15.9 182 2-185 133-349 (382)
49 KOG0113|consensus 99.7 6.2E-17 1.3E-21 123.3 13.8 73 3-75 101-181 (335)
50 KOG4212|consensus 99.7 1.8E-16 3.8E-21 126.8 16.9 178 5-184 46-290 (608)
51 PLN03120 nucleic acid binding 99.7 2.3E-17 5.1E-22 125.9 10.4 74 1-75 2-80 (260)
52 KOG0121|consensus 99.7 7.4E-18 1.6E-22 112.4 6.6 74 2-75 35-116 (153)
53 PF00076 RRM_1: RNA recognitio 99.7 4E-17 8.6E-22 103.0 8.1 63 6-68 1-70 (70)
54 KOG0113|consensus 99.7 3.6E-16 7.7E-21 119.2 13.8 76 111-186 99-179 (335)
55 KOG1190|consensus 99.7 7.5E-16 1.6E-20 122.2 15.7 183 5-188 152-373 (492)
56 PLN03134 glycine-rich RNA-bind 99.7 3.8E-15 8.3E-20 106.6 14.9 80 111-190 32-116 (144)
57 KOG0114|consensus 99.7 4.4E-16 9.5E-21 100.1 8.4 74 3-76 18-96 (124)
58 KOG0124|consensus 99.7 6.7E-15 1.5E-19 115.4 16.2 73 4-76 211-291 (544)
59 PF14259 RRM_6: RNA recognitio 99.6 1.1E-15 2.4E-20 96.3 7.7 63 6-68 1-70 (70)
60 PLN03121 nucleic acid binding 99.6 1.5E-15 3.3E-20 114.2 9.7 73 3-76 5-82 (243)
61 TIGR01659 sex-lethal sex-letha 99.6 6.2E-15 1.3E-19 120.3 13.5 77 3-79 193-279 (346)
62 KOG0120|consensus 99.6 3.6E-15 7.8E-20 124.0 11.5 175 3-185 289-489 (500)
63 COG0724 RNA-binding proteins ( 99.6 1.6E-14 3.4E-19 116.3 13.9 133 4-146 116-258 (306)
64 KOG0130|consensus 99.6 1.6E-15 3.5E-20 102.2 6.2 74 4-77 73-154 (170)
65 PLN03213 repressor of silencin 99.6 4E-15 8.6E-20 121.0 9.2 73 3-75 10-88 (759)
66 KOG0105|consensus 99.6 1E-14 2.2E-19 103.9 9.8 80 113-192 6-87 (241)
67 KOG0122|consensus 99.6 4.6E-15 9.9E-20 110.2 8.3 73 3-75 189-269 (270)
68 KOG0125|consensus 99.6 4.5E-15 9.7E-20 114.7 7.8 79 4-82 97-181 (376)
69 KOG1456|consensus 99.6 7.7E-14 1.7E-18 109.7 12.8 162 3-189 31-200 (494)
70 KOG0129|consensus 99.6 1E-13 2.2E-18 113.6 13.9 155 3-169 259-432 (520)
71 KOG0117|consensus 99.6 9.2E-15 2E-19 117.3 7.5 76 5-80 261-336 (506)
72 smart00362 RRM_2 RNA recogniti 99.6 3.1E-14 6.6E-19 89.9 8.6 65 5-69 1-71 (72)
73 KOG1456|consensus 99.6 1.1E-12 2.3E-17 103.4 18.4 179 8-186 127-361 (494)
74 PF00076 RRM_1: RNA recognitio 99.5 2.2E-14 4.7E-19 90.3 7.0 66 116-181 1-70 (70)
75 KOG4212|consensus 99.5 1.1E-12 2.4E-17 105.3 16.9 73 113-185 536-608 (608)
76 KOG0149|consensus 99.5 2.3E-14 4.9E-19 106.1 6.4 70 4-74 13-90 (247)
77 KOG0125|consensus 99.5 9.6E-14 2.1E-18 107.4 9.5 79 110-188 93-174 (376)
78 KOG0109|consensus 99.5 3E-14 6.5E-19 108.5 6.0 78 3-80 78-155 (346)
79 PF13893 RRM_5: RNA recognitio 99.5 1.6E-13 3.6E-18 82.1 7.9 53 20-72 1-56 (56)
80 KOG0126|consensus 99.5 2.6E-15 5.6E-20 106.6 -0.2 76 3-78 35-118 (219)
81 cd00590 RRM RRM (RNA recogniti 99.5 3E-13 6.4E-18 85.8 9.0 67 5-71 1-74 (74)
82 KOG0111|consensus 99.5 3.4E-14 7.3E-19 104.0 4.7 75 4-78 11-93 (298)
83 PLN03120 nucleic acid binding 99.5 6.4E-13 1.4E-17 101.8 10.2 74 113-187 4-79 (260)
84 smart00360 RRM RNA recognition 99.5 3.3E-13 7.2E-18 84.8 7.3 63 8-70 1-71 (71)
85 KOG0122|consensus 99.4 1.5E-12 3.2E-17 97.0 11.2 78 111-188 187-269 (270)
86 KOG0130|consensus 99.4 3.2E-13 6.9E-18 91.3 7.0 78 113-190 72-154 (170)
87 KOG0120|consensus 99.4 5.2E-13 1.1E-17 111.3 9.9 174 4-187 176-368 (500)
88 KOG1365|consensus 99.4 1.9E-13 4.2E-18 107.8 6.2 176 5-185 163-359 (508)
89 PF14259 RRM_6: RNA recognitio 99.4 8.6E-13 1.9E-17 83.0 7.8 66 116-181 1-70 (70)
90 KOG0114|consensus 99.4 2.7E-12 5.9E-17 82.7 9.1 78 110-187 15-94 (124)
91 KOG0121|consensus 99.4 1.2E-12 2.7E-17 87.7 7.4 77 112-188 35-116 (153)
92 PLN03213 repressor of silencin 99.4 1.9E-12 4E-17 105.7 9.1 75 113-187 10-87 (759)
93 KOG0132|consensus 99.4 2.3E-12 5E-17 110.2 9.7 75 3-77 421-497 (894)
94 KOG0108|consensus 99.4 1.6E-12 3.5E-17 107.7 8.0 74 4-77 19-100 (435)
95 PLN03121 nucleic acid binding 99.4 6.2E-12 1.4E-16 94.9 9.8 73 113-186 5-79 (243)
96 smart00362 RRM_2 RNA recogniti 99.3 8.2E-12 1.8E-16 78.6 8.7 68 115-182 1-71 (72)
97 KOG4211|consensus 99.3 2.5E-11 5.3E-16 99.2 12.6 178 4-183 104-353 (510)
98 KOG4660|consensus 99.3 1.7E-12 3.6E-17 107.4 6.0 172 1-187 73-249 (549)
99 KOG0111|consensus 99.3 2.3E-12 5E-17 94.5 4.7 77 113-189 10-91 (298)
100 KOG0415|consensus 99.3 3.5E-12 7.6E-17 99.9 5.8 75 3-77 239-321 (479)
101 KOG2193|consensus 99.3 8E-13 1.7E-17 105.7 2.1 150 3-186 1-155 (584)
102 PF13893 RRM_5: RNA recognitio 99.3 2.6E-11 5.7E-16 72.5 7.5 56 130-185 1-56 (56)
103 KOG4454|consensus 99.3 9E-13 2E-17 96.5 1.2 139 3-182 9-157 (267)
104 KOG0131|consensus 99.2 2.3E-11 5E-16 86.8 7.0 76 111-186 7-87 (203)
105 smart00361 RRM_1 RNA recogniti 99.2 4.1E-11 8.8E-16 75.1 6.7 53 17-69 2-69 (70)
106 cd00590 RRM RRM (RNA recogniti 99.2 1.1E-10 2.4E-15 73.7 8.9 69 115-183 1-73 (74)
107 KOG0146|consensus 99.2 1.4E-11 3E-16 93.1 5.0 74 3-76 285-366 (371)
108 smart00360 RRM RNA recognition 99.2 9.5E-11 2.1E-15 73.4 7.6 65 118-182 1-70 (71)
109 KOG0149|consensus 99.2 5.3E-11 1.1E-15 88.5 6.6 74 113-187 12-90 (247)
110 KOG0153|consensus 99.2 7.3E-11 1.6E-15 92.4 7.5 72 3-74 228-302 (377)
111 KOG0112|consensus 99.2 2.7E-11 5.9E-16 105.4 5.3 150 3-187 372-530 (975)
112 KOG0415|consensus 99.2 3.8E-11 8.3E-16 94.2 4.9 76 111-186 237-317 (479)
113 KOG0126|consensus 99.1 4.5E-12 9.7E-17 90.3 -0.8 73 113-185 35-112 (219)
114 KOG0108|consensus 99.1 3.4E-10 7.3E-15 94.1 7.9 76 114-189 19-99 (435)
115 KOG4208|consensus 99.1 3.8E-10 8.2E-15 82.4 7.2 73 3-75 49-130 (214)
116 COG0724 RNA-binding proteins ( 99.1 7.2E-10 1.6E-14 89.1 9.3 75 113-187 115-194 (306)
117 KOG4206|consensus 99.1 9.1E-10 2E-14 81.7 8.4 78 113-190 9-92 (221)
118 KOG0128|consensus 99.1 1.7E-11 3.7E-16 106.1 -0.8 132 4-184 668-811 (881)
119 KOG0533|consensus 99.0 9.6E-10 2.1E-14 84.2 8.0 75 4-78 84-165 (243)
120 KOG4210|consensus 99.0 5.9E-10 1.3E-14 88.5 6.2 166 3-191 88-267 (285)
121 KOG0116|consensus 99.0 2.2E-09 4.8E-14 88.8 9.7 73 3-76 288-368 (419)
122 smart00361 RRM_1 RNA recogniti 99.0 1.5E-09 3.2E-14 67.9 6.7 56 127-182 2-69 (70)
123 KOG0106|consensus 99.0 2.5E-09 5.5E-14 80.1 8.7 71 115-188 3-73 (216)
124 KOG4661|consensus 99.0 1.1E-09 2.4E-14 91.2 6.8 73 3-75 405-485 (940)
125 KOG0151|consensus 99.0 2.7E-09 5.8E-14 91.0 8.5 74 2-75 173-257 (877)
126 PF04059 RRM_2: RNA recognitio 99.0 6.4E-09 1.4E-13 68.3 8.3 71 4-74 2-86 (97)
127 KOG4307|consensus 98.9 2.2E-08 4.8E-13 85.4 11.3 72 3-74 434-513 (944)
128 KOG4307|consensus 98.9 1.2E-08 2.6E-13 87.0 9.3 178 4-182 312-508 (944)
129 PF11608 Limkain-b1: Limkain b 98.9 1.4E-08 3.1E-13 63.3 7.1 70 4-75 3-77 (90)
130 KOG4205|consensus 98.8 8E-09 1.7E-13 82.4 5.4 74 5-79 99-180 (311)
131 KOG0132|consensus 98.8 3.1E-08 6.7E-13 85.6 7.9 78 113-191 421-498 (894)
132 KOG1365|consensus 98.7 5E-07 1.1E-11 72.2 12.8 162 3-182 60-237 (508)
133 KOG4209|consensus 98.7 3E-08 6.4E-13 76.3 4.7 72 3-75 101-180 (231)
134 KOG0153|consensus 98.6 1.7E-07 3.6E-12 73.9 8.3 76 111-187 226-302 (377)
135 PF08777 RRM_3: RNA binding mo 98.6 1.1E-07 2.5E-12 64.0 6.5 70 3-72 1-77 (105)
136 KOG0116|consensus 98.6 4.5E-07 9.7E-12 75.3 10.9 77 114-191 289-370 (419)
137 KOG4661|consensus 98.6 1E-07 2.2E-12 79.8 7.0 74 113-186 405-483 (940)
138 KOG0533|consensus 98.6 1.7E-07 3.7E-12 71.9 7.7 75 113-187 83-161 (243)
139 KOG4208|consensus 98.6 2.6E-07 5.6E-12 67.8 7.8 77 111-187 47-129 (214)
140 KOG1457|consensus 98.6 1.3E-06 2.9E-11 64.9 11.5 81 111-191 32-121 (284)
141 KOG4660|consensus 98.6 8.6E-08 1.9E-12 80.1 5.5 71 111-181 73-143 (549)
142 KOG0226|consensus 98.5 1.9E-07 4.1E-12 70.6 4.8 139 21-185 117-267 (290)
143 KOG4676|consensus 98.5 1.8E-08 4E-13 80.4 -1.1 60 3-63 151-214 (479)
144 KOG4454|consensus 98.4 2E-07 4.3E-12 68.9 2.8 70 113-182 9-81 (267)
145 KOG2202|consensus 98.4 1.1E-07 2.5E-12 72.0 0.8 61 18-78 83-151 (260)
146 KOG1548|consensus 98.3 2.6E-06 5.6E-11 67.4 8.1 77 112-188 133-221 (382)
147 KOG0151|consensus 98.3 2.5E-06 5.4E-11 73.5 8.3 74 113-186 174-255 (877)
148 PF14605 Nup35_RRM_2: Nup53/35 98.3 1.5E-06 3.3E-11 50.6 4.9 51 3-54 1-53 (53)
149 KOG2416|consensus 98.3 2.4E-06 5.2E-11 72.1 6.4 77 2-78 443-525 (718)
150 KOG0226|consensus 98.2 1.5E-06 3.3E-11 65.8 4.0 70 4-73 191-268 (290)
151 COG5175 MOT2 Transcriptional r 98.2 4.1E-06 8.9E-11 66.0 6.1 71 5-75 116-203 (480)
152 KOG4209|consensus 98.2 5.5E-06 1.2E-10 63.9 6.6 75 113-188 101-180 (231)
153 PF04059 RRM_2: RNA recognitio 98.2 2.2E-05 4.7E-10 51.7 8.3 75 114-188 2-87 (97)
154 PF11608 Limkain-b1: Limkain b 98.1 5.6E-06 1.2E-10 51.9 4.3 69 114-187 3-76 (90)
155 PF08777 RRM_3: RNA binding mo 98.1 1.5E-05 3.3E-10 53.7 6.3 68 114-182 2-74 (105)
156 KOG3152|consensus 98.0 2.8E-06 6.1E-11 64.4 2.7 63 4-66 75-157 (278)
157 PF05172 Nup35_RRM: Nup53/35/4 98.0 3.8E-05 8.3E-10 50.9 6.7 70 3-74 6-91 (100)
158 KOG0128|consensus 97.9 6.7E-07 1.4E-11 78.4 -2.8 158 2-182 570-741 (881)
159 KOG1995|consensus 97.9 8.1E-06 1.8E-10 65.1 3.4 73 4-76 67-155 (351)
160 KOG1855|consensus 97.9 1.3E-05 2.8E-10 65.2 3.5 60 1-60 229-309 (484)
161 PF08952 DUF1866: Domain of un 97.9 0.00011 2.3E-09 51.8 7.5 57 19-76 52-108 (146)
162 KOG0112|consensus 97.8 8.8E-05 1.9E-09 65.9 8.3 80 2-81 454-537 (975)
163 KOG4210|consensus 97.7 4.7E-05 1E-09 60.8 4.0 73 5-78 186-267 (285)
164 KOG4849|consensus 97.7 4E-05 8.7E-10 60.9 3.3 69 5-73 82-160 (498)
165 KOG1996|consensus 97.6 0.00013 2.9E-09 56.7 5.9 57 17-73 300-365 (378)
166 KOG2202|consensus 97.6 0.00028 6E-09 54.0 7.5 58 128-185 83-145 (260)
167 KOG2314|consensus 97.6 8.1E-05 1.8E-09 62.9 5.0 71 3-73 58-142 (698)
168 KOG0115|consensus 97.6 0.00021 4.7E-09 54.5 6.5 85 48-171 5-93 (275)
169 KOG0129|consensus 97.6 0.0002 4.4E-09 59.9 6.9 53 4-56 371-432 (520)
170 KOG1995|consensus 97.6 0.00019 4.1E-09 57.5 6.4 77 111-187 64-153 (351)
171 PF08675 RNA_bind: RNA binding 97.5 0.00081 1.8E-08 42.3 7.0 53 5-58 11-63 (87)
172 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00038 8.3E-09 40.5 5.3 51 115-167 3-53 (53)
173 PF03880 DbpA: DbpA RNA bindin 97.5 0.0013 2.9E-08 41.3 7.8 67 4-72 1-74 (74)
174 COG5175 MOT2 Transcriptional r 97.5 0.00043 9.4E-09 54.9 6.5 74 113-186 114-201 (480)
175 PF10309 DUF2414: Protein of u 97.4 0.0015 3.3E-08 38.9 6.6 54 3-57 5-62 (62)
176 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0014 3.1E-08 43.5 7.0 70 114-185 7-89 (100)
177 PF15023 DUF4523: Protein of u 97.3 0.0013 2.8E-08 45.8 6.9 70 3-73 86-160 (166)
178 KOG3152|consensus 97.3 0.00021 4.7E-09 54.5 3.2 66 114-179 75-157 (278)
179 PF03467 Smg4_UPF3: Smg-4/UPF3 97.2 0.00037 8.1E-09 51.7 3.1 71 3-73 7-96 (176)
180 KOG2314|consensus 97.1 0.0014 2.9E-08 55.8 6.2 70 113-182 58-138 (698)
181 PF08952 DUF1866: Domain of un 97.0 0.0059 1.3E-07 43.1 7.3 55 129-187 52-106 (146)
182 PF08675 RNA_bind: RNA binding 96.9 0.0088 1.9E-07 37.8 7.1 53 115-171 11-63 (87)
183 KOG2416|consensus 96.8 0.0018 4E-08 55.3 4.8 76 110-186 441-520 (718)
184 KOG1855|consensus 96.8 0.0018 4E-08 53.1 4.0 63 111-173 229-309 (484)
185 KOG1996|consensus 96.7 0.0053 1.1E-07 48.1 5.7 58 127-184 300-363 (378)
186 KOG0115|consensus 96.7 0.013 2.7E-07 45.2 7.6 70 4-73 32-112 (275)
187 KOG2068|consensus 96.5 0.001 2.2E-08 53.1 0.9 71 5-75 79-163 (327)
188 KOG2591|consensus 96.4 0.0076 1.7E-07 51.3 5.5 65 4-68 176-245 (684)
189 KOG4285|consensus 96.4 0.018 3.9E-07 45.4 7.0 74 3-78 197-273 (350)
190 KOG0835|consensus 96.3 0.011 2.5E-07 47.1 5.9 12 124-135 212-223 (367)
191 PF04847 Calcipressin: Calcipr 96.3 0.016 3.4E-07 43.3 6.1 62 15-76 7-72 (184)
192 KOG4849|consensus 96.1 0.0064 1.4E-07 48.8 3.6 70 113-182 80-156 (498)
193 PF07576 BRAP2: BRCA1-associat 96.1 0.044 9.6E-07 37.1 7.1 60 5-64 15-81 (110)
194 KOG2253|consensus 96.0 0.0039 8.5E-08 54.1 1.9 68 4-72 41-108 (668)
195 KOG2193|consensus 95.9 0.0077 1.7E-07 49.6 3.2 73 115-188 3-76 (584)
196 PF10309 DUF2414: Protein of u 95.8 0.07 1.5E-06 31.9 6.2 53 114-170 6-62 (62)
197 PF11767 SET_assoc: Histone ly 95.8 0.082 1.8E-06 32.1 6.5 55 14-69 11-65 (66)
198 KOG2591|consensus 95.7 0.043 9.4E-07 47.0 6.8 66 113-180 175-244 (684)
199 KOG2135|consensus 95.5 0.009 1.9E-07 49.9 2.3 71 5-76 374-447 (526)
200 KOG0804|consensus 94.8 0.081 1.7E-06 44.2 5.7 62 3-64 74-142 (493)
201 PF07576 BRAP2: BRCA1-associat 94.7 0.49 1.1E-05 32.1 8.5 64 114-177 14-81 (110)
202 KOG2135|consensus 94.3 0.08 1.7E-06 44.5 4.6 70 116-187 375-445 (526)
203 KOG2253|consensus 93.9 0.18 3.8E-06 44.4 6.0 71 110-184 37-107 (668)
204 PF14111 DUF4283: Domain of un 93.8 0.063 1.4E-06 38.8 3.0 107 14-147 28-139 (153)
205 PF03467 Smg4_UPF3: Smg-4/UPF3 93.1 0.087 1.9E-06 39.2 2.7 65 113-177 7-82 (176)
206 KOG4285|consensus 93.0 0.45 9.7E-06 37.8 6.5 70 116-188 200-270 (350)
207 PF07292 NID: Nmi/IFP 35 domai 92.9 0.18 3.8E-06 32.6 3.6 70 40-135 1-74 (88)
208 KOG4574|consensus 92.9 0.072 1.6E-06 48.0 2.4 72 5-76 300-375 (1007)
209 PF04847 Calcipressin: Calcipr 92.6 0.46 1E-05 35.5 6.0 62 126-188 8-71 (184)
210 PF15023 DUF4523: Protein of u 92.2 0.35 7.6E-06 34.0 4.5 64 114-180 87-154 (166)
211 KOG2068|consensus 92.2 0.066 1.4E-06 43.1 1.1 74 113-186 77-161 (327)
212 KOG2318|consensus 91.8 1 2.2E-05 39.2 7.7 71 3-73 174-306 (650)
213 PF03880 DbpA: DbpA RNA bindin 88.9 3.5 7.7E-05 25.6 6.7 60 122-185 10-74 (74)
214 KOG4410|consensus 88.7 4.2 9.1E-05 32.3 8.1 46 114-160 331-377 (396)
215 KOG0804|consensus 87.3 1.9 4.1E-05 36.5 5.8 65 113-177 74-142 (493)
216 KOG2295|consensus 86.0 0.19 4.1E-06 43.3 -0.5 63 2-64 230-300 (648)
217 COG2608 CopZ Copper chaperone 85.2 6.2 0.00013 24.3 6.2 47 1-47 1-49 (71)
218 KOG4365|consensus 85.2 0.15 3.2E-06 42.6 -1.4 74 1-75 1-82 (572)
219 KOG2891|consensus 84.7 0.53 1.2E-05 36.9 1.4 32 4-35 150-193 (445)
220 KOG4574|consensus 84.3 0.82 1.8E-05 41.6 2.6 71 116-187 301-373 (1007)
221 PF03468 XS: XS domain; Inter 83.6 1.5 3.3E-05 30.1 3.1 51 4-54 9-74 (116)
222 KOG1295|consensus 82.5 1.3 2.9E-05 36.5 2.9 60 3-62 7-77 (376)
223 PRK11634 ATP-dependent RNA hel 82.2 24 0.00052 32.2 11.0 61 122-186 496-561 (629)
224 PF11767 SET_assoc: Histone ly 81.4 9.7 0.00021 23.2 6.9 56 123-182 10-65 (66)
225 PF15513 DUF4651: Domain of un 81.1 3.6 7.8E-05 24.5 3.6 18 18-35 9-26 (62)
226 KOG4483|consensus 80.8 4.2 9.1E-05 33.9 5.1 53 4-57 392-446 (528)
227 KOG4246|consensus 78.6 1 2.2E-05 41.0 1.1 9 114-122 146-154 (1194)
228 KOG4019|consensus 75.7 4.4 9.6E-05 29.9 3.5 73 3-75 10-90 (193)
229 KOG4410|consensus 73.4 8.1 0.00018 30.8 4.7 47 4-50 331-380 (396)
230 PF10567 Nab6_mRNP_bdg: RNA-re 72.0 7 0.00015 31.3 4.1 161 3-171 15-212 (309)
231 KOG4246|consensus 71.6 4.5 9.7E-05 37.1 3.2 14 120-133 194-207 (1194)
232 PRK14548 50S ribosomal protein 71.5 24 0.00051 22.7 5.7 52 5-56 22-80 (84)
233 PRK10629 EnvZ/OmpR regulon mod 70.1 35 0.00075 23.9 8.1 70 4-73 36-109 (127)
234 KOG4019|consensus 68.1 9.6 0.00021 28.2 3.8 73 115-188 12-90 (193)
235 PF14893 PNMA: PNMA 66.5 8.3 0.00018 31.9 3.7 43 5-47 20-72 (331)
236 KOG4008|consensus 64.8 4.2 9.2E-05 31.3 1.5 42 4-45 41-82 (261)
237 PF07292 NID: Nmi/IFP 35 domai 63.1 3.9 8.5E-05 26.5 1.0 24 2-25 51-74 (88)
238 KOG2891|consensus 62.4 1.2 2.5E-05 35.1 -1.8 120 13-146 47-194 (445)
239 PF11411 DNA_ligase_IV: DNA li 61.3 7.6 0.00016 20.3 1.6 17 13-29 19-35 (36)
240 KOG3580|consensus 59.5 40 0.00086 30.2 6.5 34 113-146 61-95 (1027)
241 PRK11634 ATP-dependent RNA hel 58.9 72 0.0016 29.2 8.5 61 12-73 496-561 (629)
242 PF03439 Spt5-NGN: Early trans 56.2 22 0.00048 22.7 3.6 32 29-60 33-67 (84)
243 KOG2318|consensus 56.1 83 0.0018 28.1 7.8 70 111-180 172-298 (650)
244 cd00027 BRCT Breast Cancer Sup 55.5 39 0.00085 19.6 5.9 48 4-51 2-49 (72)
245 PF09902 DUF2129: Uncharacteri 54.8 38 0.00083 20.9 4.3 39 23-62 16-54 (71)
246 PF02714 DUF221: Domain of unk 52.8 29 0.00063 28.6 4.7 20 40-59 1-20 (325)
247 PF08544 GHMP_kinases_C: GHMP 52.8 55 0.0012 20.4 5.5 40 18-58 37-80 (85)
248 KOG4483|consensus 52.1 35 0.00076 28.8 4.8 54 113-168 391-445 (528)
249 PF14893 PNMA: PNMA 50.4 21 0.00045 29.6 3.4 49 113-161 18-73 (331)
250 KOG0862|consensus 50.2 11 0.00025 28.7 1.7 30 18-47 89-119 (216)
251 COG0018 ArgS Arginyl-tRNA synt 50.0 1.2E+02 0.0027 27.4 8.3 98 13-146 56-163 (577)
252 PF00403 HMA: Heavy-metal-asso 47.7 55 0.0012 19.0 6.0 51 5-55 1-57 (62)
253 COG0030 KsgA Dimethyladenosine 47.4 32 0.00069 27.4 3.9 42 5-54 97-138 (259)
254 PF15063 TC1: Thyroid cancer p 47.3 13 0.00028 23.1 1.3 23 8-30 30-52 (79)
255 PF07530 PRE_C2HC: Associated 47.0 57 0.0012 19.9 4.2 58 128-188 2-65 (68)
256 TIGR02542 B_forsyth_147 Bacter 46.5 93 0.002 21.3 5.9 29 4-36 6-34 (145)
257 PRK08559 nusG transcription an 45.6 68 0.0015 23.2 5.2 31 30-60 36-69 (153)
258 PF08734 GYD: GYD domain; Int 45.3 84 0.0018 20.4 5.7 42 17-58 22-68 (91)
259 COG0150 PurM Phosphoribosylami 45.2 11 0.00024 31.0 1.1 44 17-60 275-322 (345)
260 smart00596 PRE_C2HC PRE_C2HC d 44.0 55 0.0012 20.1 3.7 57 128-187 2-64 (69)
261 KOG4213|consensus 43.9 29 0.00063 25.8 2.9 42 15-56 118-169 (205)
262 PF03439 Spt5-NGN: Early trans 43.7 49 0.0011 21.1 3.8 35 139-173 33-67 (84)
263 PF01782 RimM: RimM N-terminal 41.9 59 0.0013 20.5 4.0 30 30-60 47-76 (84)
264 COG4483 Uncharacterized protei 41.8 49 0.0011 20.0 3.1 28 16-54 3-30 (68)
265 PF00313 CSD: 'Cold-shock' DNA 40.8 26 0.00056 21.0 2.0 20 28-47 3-22 (66)
266 PF00398 RrnaAD: Ribosomal RNA 39.8 25 0.00055 28.0 2.4 42 4-54 98-141 (262)
267 PRK11230 glycolate oxidase sub 39.1 1.1E+02 0.0024 27.1 6.4 55 4-58 190-255 (499)
268 PF09869 DUF2096: Uncharacteri 38.2 1.3E+02 0.0028 22.2 5.4 51 5-58 114-164 (169)
269 PF13104 DUF3956: Protein of u 37.8 24 0.00051 18.8 1.2 13 1-13 1-13 (45)
270 KOG2146|consensus 36.7 1.5E+02 0.0033 23.9 6.0 11 41-51 56-66 (354)
271 PRK12450 foldase protein PrsA; 35.1 93 0.002 25.6 5.0 43 14-62 132-176 (309)
272 PF00276 Ribosomal_L23: Riboso 35.0 1.2E+02 0.0027 19.7 4.6 45 5-49 21-85 (91)
273 PRK15464 cold shock-like prote 35.0 30 0.00066 21.3 1.7 20 27-46 6-25 (70)
274 PF06014 DUF910: Bacterial pro 34.9 27 0.00059 20.9 1.4 15 16-30 3-17 (62)
275 cd01611 GABARAP Ubiquitin doma 34.8 84 0.0018 21.5 3.9 11 18-28 85-95 (112)
276 COG0002 ArgC Acetylglutamate s 34.8 1.1E+02 0.0024 25.6 5.2 23 4-27 247-269 (349)
277 PF02714 DUF221: Domain of unk 34.2 67 0.0015 26.4 4.1 32 153-186 1-32 (325)
278 PF11823 DUF3343: Protein of u 34.0 73 0.0016 19.6 3.3 26 38-63 2-27 (73)
279 PF10567 Nab6_mRNP_bdg: RNA-re 34.0 1.1E+02 0.0024 24.9 4.9 52 114-165 16-79 (309)
280 TIGR02381 cspD cold shock doma 33.4 37 0.0008 20.7 1.9 20 27-46 3-22 (68)
281 TIGR00755 ksgA dimethyladenosi 33.3 53 0.0011 25.9 3.3 23 6-28 97-119 (253)
282 KOG1295|consensus 33.2 47 0.001 27.9 2.9 63 113-175 7-77 (376)
283 PRK02302 hypothetical protein; 32.8 1.3E+02 0.0029 19.5 4.3 38 23-61 22-59 (89)
284 PHA01632 hypothetical protein 32.6 52 0.0011 19.0 2.2 21 6-26 19-39 (64)
285 smart00457 MACPF membrane-atta 32.5 88 0.0019 23.6 4.2 27 9-35 31-59 (194)
286 CHL00123 rps6 ribosomal protei 32.3 1.4E+02 0.0031 19.6 4.6 50 5-56 10-81 (97)
287 PRK09507 cspE cold shock prote 32.2 37 0.00081 20.7 1.7 20 27-46 5-24 (69)
288 PRK02886 hypothetical protein; 31.9 1.4E+02 0.0031 19.3 4.3 39 23-62 20-58 (87)
289 KOG2295|consensus 31.8 9.2 0.0002 33.5 -1.3 68 113-180 231-303 (648)
290 PRK10943 cold shock-like prote 31.5 39 0.00085 20.7 1.7 20 27-46 5-24 (69)
291 TIGR03636 L23_arch archaeal ri 31.3 1.4E+02 0.003 18.8 5.2 50 5-54 15-71 (77)
292 PRK09937 stationary phase/star 31.3 43 0.00093 20.9 1.9 19 28-46 4-22 (74)
293 TIGR00405 L26e_arch ribosomal 31.3 1.6E+02 0.0035 20.9 5.2 31 30-60 28-61 (145)
294 PRK14998 cold shock-like prote 31.2 44 0.00095 20.7 2.0 19 28-46 4-22 (73)
295 PRK15463 cold shock-like prote 30.7 40 0.00087 20.7 1.7 20 27-46 6-25 (70)
296 KOG3671|consensus 30.3 2.7E+02 0.0058 24.6 6.9 49 124-172 89-137 (569)
297 cd04458 CSP_CDS Cold-Shock Pro 29.9 47 0.001 19.7 1.9 20 27-46 2-21 (65)
298 PF04993 TfoX_N: TfoX N-termin 29.6 68 0.0015 21.0 2.8 23 20-42 1-23 (97)
299 KOG2187|consensus 29.5 52 0.0011 29.0 2.7 68 8-75 30-101 (534)
300 PF12829 Mhr1: Transcriptional 29.1 1.4E+02 0.0031 19.5 4.0 50 10-59 19-73 (91)
301 PF11910 NdhO: Cyanobacterial 28.9 57 0.0012 19.6 2.0 23 23-47 31-53 (67)
302 KOG0156|consensus 28.6 1.3E+02 0.0028 26.6 5.1 59 7-67 36-97 (489)
303 PRK00274 ksgA 16S ribosomal RN 28.5 72 0.0016 25.6 3.3 22 5-26 107-128 (272)
304 PTZ00338 dimethyladenosine tra 28.2 74 0.0016 26.0 3.3 47 5-60 103-149 (294)
305 PF13046 DUF3906: Protein of u 28.0 1E+02 0.0022 18.6 2.9 27 16-42 31-63 (64)
306 PRK09890 cold shock protein Cs 27.7 47 0.001 20.4 1.7 20 27-46 6-25 (70)
307 COG0445 GidA Flavin-dependent 27.5 2.9E+02 0.0063 25.0 6.8 37 110-146 298-334 (621)
308 PRK08559 nusG transcription an 27.4 2.4E+02 0.0052 20.3 5.9 33 140-172 36-68 (153)
309 PF09702 Cas_Csa5: CRISPR-asso 27.3 72 0.0016 21.3 2.5 21 3-26 64-84 (105)
310 PRK10354 RNA chaperone/anti-te 26.9 49 0.0011 20.2 1.7 20 27-46 6-25 (70)
311 TIGR00387 glcD glycolate oxida 26.7 1.6E+02 0.0034 25.4 5.2 45 14-58 143-198 (413)
312 KOG3702|consensus 26.6 1.7E+02 0.0037 26.7 5.3 65 4-69 512-584 (681)
313 cd01612 APG12_C Ubiquitin-like 26.1 1.9E+02 0.0041 18.7 4.4 13 12-24 23-35 (87)
314 PF11491 DUF3213: Protein of u 25.4 1.6E+02 0.0036 18.8 3.7 64 6-70 3-72 (88)
315 COG3444 Phosphotransferase sys 25.3 2.8E+02 0.006 20.4 5.6 22 37-58 76-97 (159)
316 cd06257 DnaJ DnaJ domain or J- 24.7 68 0.0015 17.9 1.9 20 8-27 5-24 (55)
317 PF01823 MACPF: MAC/Perforin d 24.5 76 0.0017 23.9 2.7 25 8-32 53-80 (212)
318 smart00650 rADc Ribosomal RNA 24.5 1.1E+02 0.0025 22.2 3.5 23 5-27 79-101 (169)
319 PF09707 Cas_Cas2CT1978: CRISP 23.9 1.9E+02 0.0041 18.7 3.9 42 3-44 25-71 (86)
320 smart00738 NGN In Spt5p, this 23.3 1.4E+02 0.003 19.6 3.5 24 37-60 59-82 (106)
321 PF10281 Ish1: Putative stress 23.3 81 0.0018 16.5 1.9 17 14-30 3-19 (38)
322 PHA03008 hypothetical protein; 23.2 1.4E+02 0.003 22.7 3.6 42 5-46 23-64 (234)
323 PLN02805 D-lactate dehydrogena 22.8 2.2E+02 0.0048 25.7 5.5 44 15-58 278-332 (555)
324 PLN02707 Soluble inorganic pyr 22.7 42 0.00091 26.9 0.9 42 17-59 207-249 (267)
325 PF11116 DUF2624: Protein of u 22.1 2E+02 0.0043 18.6 3.7 33 14-61 14-47 (85)
326 cd06405 PB1_Mekk2_3 The PB1 do 22.1 2.1E+02 0.0046 17.9 7.6 60 10-70 15-75 (79)
327 smart00271 DnaJ DnaJ molecular 21.8 82 0.0018 18.0 1.9 20 8-27 6-25 (60)
328 TIGR01639 P_fal_TIGR01639 Plas 21.5 43 0.00092 19.9 0.6 22 10-31 5-26 (61)
329 KOG3449|consensus 21.4 2.1E+02 0.0046 19.4 3.8 36 13-63 16-52 (112)
330 COG1308 EGD2 Transcription fac 21.4 1.9E+02 0.0041 20.1 3.7 31 14-60 82-112 (122)
331 PF11387 DUF2795: Protein of u 20.8 1.6E+02 0.0035 16.1 4.1 22 8-29 1-22 (44)
332 PF01984 dsDNA_bind: Double-st 20.8 67 0.0014 21.7 1.5 21 9-29 75-95 (107)
333 PRK13828 rimM 16S rRNA-process 20.6 2.1E+02 0.0045 20.9 4.2 37 30-72 34-70 (161)
334 PF00226 DnaJ: DnaJ domain; I 20.4 79 0.0017 18.5 1.7 20 8-27 5-24 (64)
335 PF02829 3H: 3H domain; Inter 20.4 2.7E+02 0.0059 18.5 5.0 47 13-59 7-58 (98)
336 cd00187 TOP4c DNA Topoisomeras 20.4 5.9E+02 0.013 22.3 8.0 51 4-54 226-286 (445)
337 PF08203 RNA_polI_A14: Yeast R 20.3 65 0.0014 20.2 1.2 23 4-27 3-25 (76)
338 PF15440 THRAP3_BCLAF1: THRAP3 20.1 2.5E+02 0.0054 26.0 5.3 59 202-261 1-59 (646)
339 PF13037 DUF3898: Domain of un 20.1 1.8E+02 0.0038 18.8 3.1 44 15-58 31-90 (91)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.5e-33 Score=228.61 Aligned_cols=155 Identities=23% Similarity=0.397 Sum_probs=136.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.|+|||+|||+++|+++|+++|+.||+|++|+|. +|||||+|.++++|+.||+.|++..|.++.|.|.++.+
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 5899999999999999999999999999999883 58999999999999999999999999999999998764
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~ 149 (262)
.... ....+|||+|||..+++++|+++|++||.|..+.+. +.+
T Consensus 187 ~~~~--------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~ 234 (346)
T TIGR01659 187 GGES--------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTP 234 (346)
T ss_pred cccc--------------------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCcc
Confidence 2110 113479999999999999999999999999988876 345
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCC--ceEEEeecCCCC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNG--RRIRLIEDKPRG 189 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g--~~~~v~~~~~~~ 189 (262)
+++|||+|++.++|++||+.|++..+.+ ..|.|..+....
T Consensus 235 kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 235 RGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 6899999999999999999999998876 578888776543
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=4.7e-31 Score=224.82 Aligned_cols=165 Identities=22% Similarity=0.410 Sum_probs=139.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+++++|+++|..||+|..|.| ++|||||+|.++++|+.||+.|||..|.|+.|.|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 589999999999999999999999999999998 389999999999999999999999999999999985432
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~ 149 (262)
...... .............+|||+||+..+++++|+++|+.||.|..+.+. +..
T Consensus 187 ~p~a~~---------------------~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgks 245 (612)
T TIGR01645 187 MPQAQP---------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGH 245 (612)
T ss_pred cccccc---------------------ccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCc
Confidence 111000 000001111224689999999999999999999999999999886 346
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+|||||+|.+.++|..|+..||+..++|+.|+|..+.+.
T Consensus 246 KGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 246 KGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred CCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 899999999999999999999999999999999888753
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.3e-29 Score=210.28 Aligned_cols=188 Identities=21% Similarity=0.331 Sum_probs=140.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCC--ceEEEEE
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLG--ERVTVEI 71 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~ 71 (262)
..++|||+|||+.+++++|.++|..||.|..+.+. +|||||+|.+.++|+.|+..|||..+.| ..|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 35789999999999999999999999999888872 6899999999999999999999998877 5788888
Q ss_pred ccCCCcccccCCCC--------CCC---CC-------CCCCC------------------------------CCCCCCCC
Q psy10320 72 AKGIDRSQERGRRG--------YGS---YR-------APPPR------------------------------RGWGHDRD 103 (262)
Q Consensus 72 ~~~~~~~~~~~~~~--------~~~---~~-------~~~~~------------------------------~~~~~~~~ 103 (262)
+............. ... .. ..+.. ........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 86544211110000 000 00 00000 00000000
Q ss_pred ------------CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHH
Q psy10320 104 ------------DRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKA 166 (262)
Q Consensus 104 ------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a 166 (262)
............|||+|||..+++++|.++|++||.|..+.+. +.++|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0000012234479999999999999999999999999999886 45699999999999999999
Q ss_pred HHHhCCcccCCceEEEeecCCCC
Q psy10320 167 LDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 167 ~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
+..|||..|+|+.|.|.+...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999887653
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.6e-30 Score=213.54 Aligned_cols=154 Identities=21% Similarity=0.369 Sum_probs=135.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||+|.+|.|. +|||||+|.++++|+.||+.|||..|.|+.|.|.++.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 4799999999999999999999999999999983 58999999999999999999999999999999998864
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~ 149 (262)
.... .....|||+|||..+++++|.++|..||.|..+.+. +..
T Consensus 83 ~~~~--------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~ 130 (352)
T TIGR01661 83 SSDS--------------------------------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLS 130 (352)
T ss_pred cccc--------------------------------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCc
Confidence 3211 114589999999999999999999999999888775 346
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCC--ceEEEeecCCC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNG--RRIRLIEDKPR 188 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g--~~~~v~~~~~~ 188 (262)
+++|||+|++.++|..|+..|+|..+.| ..|.|.++...
T Consensus 131 ~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 131 KGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 8899999999999999999999999887 45777776543
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=9.7e-29 Score=211.39 Aligned_cols=185 Identities=23% Similarity=0.262 Sum_probs=141.3
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLPY-GVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 78 (262)
+++|||+|||+ .+|+++|+++|+.||.|..|+|. +|+|||+|.++++|..||..|||..|.|+.|.|.+++.....
T Consensus 275 ~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~ 354 (481)
T TIGR01649 275 GSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQ 354 (481)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccccc
Confidence 47999999998 69999999999999999999984 699999999999999999999999999999999998764322
Q ss_pred cccCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCc--eEEEecccC--
Q psy10320 79 QERGRRGY------GSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGE--VCYADAHKR-- 148 (262)
Q Consensus 79 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--i~~~~~~~~-- 148 (262)
........ ............... .........+..+|||+|||..+++++|+++|+.||. |..+.+...
T Consensus 355 ~~~~~~~~~~~~~~~d~~~~~~~r~~~~~-~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~~ 433 (481)
T TIGR01649 355 PPREGQLDDGLTSYKDYSSSRNHRFKKPG-SANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKDN 433 (481)
T ss_pred CCCCCcCcCCCcccccccCCccccCCCcc-cccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCCC
Confidence 11110000 000000101110000 0001111234678999999999999999999999997 777777633
Q ss_pred -CCceEEEEecCHHHHHHHHHHhCCcccCCce------EEEeecCCC
Q psy10320 149 -HRNEGVVEFESSSDMKKALDKLDNAELNGRR------IRLIEDKPR 188 (262)
Q Consensus 149 -~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~------~~v~~~~~~ 188 (262)
.+++|||+|.+.++|..||..|||..+.+.. |+|.+++++
T Consensus 434 ~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 434 ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 3789999999999999999999999999885 899888764
No 6
>KOG0109|consensus
Probab=99.97 E-value=2.6e-30 Score=194.74 Aligned_cols=150 Identities=29% Similarity=0.533 Sum_probs=140.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCccccc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQER 81 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 81 (262)
|+-+|||||||.++++.+|+.+|++||+|.+|.|.|.||||..++...|+.||..|+|..|+|..|.|+.++.+.+.
T Consensus 1 ~~~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~--- 77 (346)
T KOG0109|consen 1 MPVKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA--- 77 (346)
T ss_pred CccchhccCCCcccchHHHHHHHHhhCceEeeeeecccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC---
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999876322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHH
Q psy10320 82 GRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSS 161 (262)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~ 161 (262)
..+|+|+|+.+.++.++++..|++||+|..++|. ++|+||+|+-.+
T Consensus 78 -------------------------------stkl~vgNis~tctn~ElRa~fe~ygpviecdiv---kdy~fvh~d~~e 123 (346)
T KOG0109|consen 78 -------------------------------STKLHVGNISPTCTNQELRAKFEKYGPVIECDIV---KDYAFVHFDRAE 123 (346)
T ss_pred -------------------------------ccccccCCCCccccCHHHhhhhcccCCceeeeee---cceeEEEEeecc
Confidence 4489999999999999999999999999999996 589999999999
Q ss_pred HHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 162 DMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 162 ~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+|..|+..|++.+|.|+.++|.....+
T Consensus 124 da~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 124 DAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred chHHHHhcccccccccceeeeeeeccc
Confidence 999999999999999999999877654
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=4.8e-29 Score=213.56 Aligned_cols=163 Identities=26% Similarity=0.425 Sum_probs=137.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..+|||+|||+.+|+++|+++|+.||.|.+|.|. +|||||+|.+.++|++|| .|+|..|.|+.|.|.++..
T Consensus 89 ~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 89 DRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEeecch
Confidence 4689999999999999999999999999999983 799999999999999999 6999999999999987654
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~ 149 (262)
............ ........+|||+|||..+++++|.++|+.||.|..+.+. +..
T Consensus 168 ~~~~~~~~~~~~--------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~ 227 (457)
T TIGR01622 168 EKNRAAKAATHQ--------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRS 227 (457)
T ss_pred hhhhhhhccccc--------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCcc
Confidence 322111000000 0000115689999999999999999999999999999877 356
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 228 ~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 228 KGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred ceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 7999999999999999999999999999999999865
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1.7e-28 Score=208.88 Aligned_cols=185 Identities=25% Similarity=0.358 Sum_probs=137.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccC-CceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLL-GERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~ 74 (262)
+|+|||+|||++++|++|.++|+.||.|.+|+| ++|||||+|.+.++|+.||+.||+..|. |+.|.|..+..
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 589999999999999999999999999999988 3799999999999999999999998884 67766655432
Q ss_pred CCc----------cccc---CCCCCCC-----------CCCCCCC-------------------------C--------C
Q psy10320 75 IDR----------SQER---GRRGYGS-----------YRAPPPR-------------------------R--------G 97 (262)
Q Consensus 75 ~~~----------~~~~---~~~~~~~-----------~~~~~~~-------------------------~--------~ 97 (262)
... .... ....... ....... . .
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~Vd 217 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVD 217 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEE
Confidence 110 0000 0000000 0000000 0 0
Q ss_pred CCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcC--CceEEEecccCCCceEEEEecCHHHHHHHHHHhCCccc
Q psy10320 98 WGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQV--GEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL 175 (262)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~ 175 (262)
|................+|||+||+..+++++|+++|+.| |.|..+.+. +++|||+|++.++|.+|++.|||..|
T Consensus 218 wA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~---rgfAFVeF~s~e~A~kAi~~lnG~~i 294 (578)
T TIGR01648 218 WAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI---RDYAFVHFEDREDAVKAMDELNGKEL 294 (578)
T ss_pred eecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee---cCeEEEEeCCHHHHHHHHHHhCCCEE
Confidence 0000000001112335689999999999999999999999 999999775 57999999999999999999999999
Q ss_pred CCceEEEeecCCCCC
Q psy10320 176 NGRRIRLIEDKPRGG 190 (262)
Q Consensus 176 ~g~~~~v~~~~~~~~ 190 (262)
.|+.|.|.++++...
T Consensus 295 ~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 295 EGSEIEVTLAKPVDK 309 (578)
T ss_pred CCEEEEEEEccCCCc
Confidence 999999999987644
No 9
>KOG0148|consensus
Probab=99.96 E-value=7.6e-29 Score=185.09 Aligned_cols=168 Identities=20% Similarity=0.363 Sum_probs=142.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
-|||+.|.+.++-++|++.|.+||+|.+++| +|||+||.|.+.++|+.||+.|||.+|+++.|.-.|+..+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 4899999999999999999999999999998 38999999999999999999999999999999999998765
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEE
Q psy10320 77 RSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVE 156 (262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~ 156 (262)
....... ....+-+......+++||++|++..+++++|++.|..||.|..|.+... +||+||.
T Consensus 144 ~e~n~~~----------------ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-qGYaFVr 206 (321)
T KOG0148|consen 144 SEMNGKP----------------LTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-QGYAFVR 206 (321)
T ss_pred cccCCCC----------------ccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-cceEEEE
Confidence 2211100 0111111222334779999999999999999999999999999999864 6999999
Q ss_pred ecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 157 FESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 157 f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
|.+.+.|..||..+|+.++.|..++....+...
T Consensus 207 F~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 207 FETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred ecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 999999999999999999999999987766543
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=6.9e-28 Score=206.16 Aligned_cols=166 Identities=22% Similarity=0.262 Sum_probs=136.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHh--cCcccCCceEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYEL--NGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l--~~~~~~g~~l~v~~~~~~~~~ 78 (262)
+.+|||+|||+.+|+++|+++|+.||.|..|.|. ++||||+|.++++|+.|+..| ++..+.|+.|.|+++......
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~ 81 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIK 81 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccc
Confidence 5799999999999999999999999999999884 789999999999999999864 678999999999999754322
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCC-CceEEEEe
Q psy10320 79 QERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRH-RNEGVVEF 157 (262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~-~~~~~v~f 157 (262)
..... . .. .........|+|.||++.+++++|.++|+.||.|..+.+..+. .++|||+|
T Consensus 82 ~~~~~---~---------------~~--~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef 141 (481)
T TIGR01649 82 RDGNS---D---------------FD--SAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEF 141 (481)
T ss_pred cCCCC---c---------------cc--CCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEE
Confidence 11100 0 00 0011123479999999999999999999999999999887443 47899999
Q ss_pred cCHHHHHHHHHHhCCcccCC--ceEEEeecCCC
Q psy10320 158 ESSSDMKKALDKLDNAELNG--RRIRLIEDKPR 188 (262)
Q Consensus 158 ~~~~~a~~a~~~l~g~~~~g--~~~~v~~~~~~ 188 (262)
.+.++|.+|++.|||..+.+ +.|+|.++++.
T Consensus 142 ~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 142 ESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred CCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 99999999999999999965 47888887653
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=6.8e-28 Score=209.16 Aligned_cols=181 Identities=14% Similarity=0.212 Sum_probs=135.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC------------CceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGY------------GRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVT 68 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~------------G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 68 (262)
..+|||+|||+.+|+++|.++|..| +.|..+.+. +|||||+|.++++|..|| .|+|..|.|..|.
T Consensus 175 ~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~ 253 (509)
T TIGR01642 175 ARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLK 253 (509)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeE
Confidence 4689999999999999999999874 345666663 799999999999999999 7999999999999
Q ss_pred EEEccCCCcccccCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-
Q psy10320 69 VEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHD-RDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH- 146 (262)
Q Consensus 69 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~- 146 (262)
|................ ....+....... .............+|||+|||..+++++|.++|+.||.|..+.+.
T Consensus 254 v~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 329 (509)
T TIGR01642 254 IRRPHDYIPVPQITPEV----SQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIK 329 (509)
T ss_pred ecCccccCCccccCCCC----CCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEe
Confidence 97554432111000000 000000000000 000111122345699999999999999999999999999988775
Q ss_pred ----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 147 ----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 147 ----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+..+|||||+|.+.++|..|+..|+|..++|+.|.|..+...
T Consensus 330 ~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 330 DIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred cCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 446899999999999999999999999999999999887643
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3.1e-28 Score=213.10 Aligned_cols=155 Identities=24% Similarity=0.364 Sum_probs=136.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
++|||+|||+++||++|.++|+.||.|..|.|. +|||||+|.+.++|+.|++.|++..|.|+.|.|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 479999999999999999999999999999983 589999999999999999999999999999999987532
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCc
Q psy10320 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRN 151 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~ 151 (262)
.... .....+|||+|||.++++++|.++|+.||.|..+.+. +..+|
T Consensus 81 ~~~~------------------------------~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg 130 (562)
T TIGR01628 81 PSLR------------------------------RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRG 130 (562)
T ss_pred cccc------------------------------ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCccc
Confidence 1110 0113479999999999999999999999999988876 34689
Q ss_pred eEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 152 EGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 152 ~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+|||+|.+.++|..|++.|+|..+.|+.|.|....++
T Consensus 131 ~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~ 167 (562)
T TIGR01628 131 YGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIKK 167 (562)
T ss_pred EEEEEECCHHHHHHHHHHhcccEecCceEEEeccccc
Confidence 9999999999999999999999999999998765543
No 13
>KOG0117|consensus
Probab=99.96 E-value=5.8e-28 Score=191.98 Aligned_cols=185 Identities=25% Similarity=0.399 Sum_probs=143.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCccc-CCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSL-LGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~-~g~~l~v~~~~ 73 (262)
+|-||||.||.++.|++|.-+|++.|+|-++.|+ +|||||.|.+.++|+.||..||+..| .|+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 6889999999999999999999999999999984 89999999999999999999999987 68888887775
Q ss_pred CCCc----------cccc-----------------------CCCCCC----------------CCCCCCC--------CC
Q psy10320 74 GIDR----------SQER-----------------------GRRGYG----------------SYRAPPP--------RR 96 (262)
Q Consensus 74 ~~~~----------~~~~-----------------------~~~~~~----------------~~~~~~~--------~~ 96 (262)
.... ..+. ...+.+ ..-.+.. .-
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 4311 1100 000000 0000111 12
Q ss_pred CCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccC
Q psy10320 97 GWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELN 176 (262)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~ 176 (262)
.|...........+.....|||.||+.++|++.|+++|++||.|..|..+ +.||||+|.+.++|.+|++.+||++|+
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~---rDYaFVHf~eR~davkAm~~~ngkeld 319 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP---RDYAFVHFAEREDAVKAMKETNGKELD 319 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecc---cceeEEeecchHHHHHHHHHhcCceec
Confidence 22222222222234445789999999999999999999999999999876 569999999999999999999999999
Q ss_pred CceEEEeecCCCCC
Q psy10320 177 GRRIRLIEDKPRGG 190 (262)
Q Consensus 177 g~~~~v~~~~~~~~ 190 (262)
|..|.|..++|...
T Consensus 320 G~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 320 GSPIEVTLAKPVDK 333 (506)
T ss_pred CceEEEEecCChhh
Confidence 99999999887653
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.7e-27 Score=208.47 Aligned_cols=172 Identities=25% Similarity=0.400 Sum_probs=140.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccC----CceEEEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLL----GERVTVEI 71 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~----g~~l~v~~ 71 (262)
.++|||+|||+.+|+++|+++|+.||+|..+.+. +|||||+|.+.++|..|++.|+|..|. |..|.|.+
T Consensus 178 ~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~ 257 (562)
T TIGR01628 178 FTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGR 257 (562)
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeec
Confidence 4789999999999999999999999999999883 689999999999999999999999999 99999988
Q ss_pred ccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----c
Q psy10320 72 AKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----K 147 (262)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~ 147 (262)
+................. ...........+|||+||+..+++++|+++|+.||.|..+.+. +
T Consensus 258 a~~k~er~~~~~~~~~~~--------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g 323 (562)
T TIGR01628 258 AQKRAEREAELRRKFEEL--------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKG 323 (562)
T ss_pred ccChhhhHHHHHhhHHhh--------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCC
Confidence 765433211100000000 0000011224589999999999999999999999999999886 4
Q ss_pred CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 148 RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 148 ~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
..+|+|||+|.+.++|.+|+..|||..++|+.|.|..+..+
T Consensus 324 ~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 324 VSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 56899999999999999999999999999999999887754
No 15
>KOG0131|consensus
Probab=99.95 E-value=1.7e-27 Score=167.96 Aligned_cols=159 Identities=23% Similarity=0.302 Sum_probs=139.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..||||+||+..++++.|+++|-+.|+|..+.|+ +|||||+|.++|+|+-|+.-||...+.|++|.|..+..
T Consensus 9 d~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~ 88 (203)
T KOG0131|consen 9 DATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASA 88 (203)
T ss_pred CceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEeccc
Confidence 4799999999999999999999999999999994 79999999999999999999999999999999988762
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEE-e-----cccC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA-D-----AHKR 148 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~-----~~~~ 148 (262)
.... ...+..|||+||.+.+.+..|.+.|+.||.+... . ..+.
T Consensus 89 ~~~n-------------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~ 137 (203)
T KOG0131|consen 89 HQKN-------------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGN 137 (203)
T ss_pred cccc-------------------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCC
Confidence 2111 1113589999999999999999999999987653 2 2256
Q ss_pred CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCCCC
Q psy10320 149 HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGGGR 192 (262)
Q Consensus 149 ~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~~~ 192 (262)
+++++||.|+..+.+.+|+..|+|+.+++++++|.++..+...+
T Consensus 138 ~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 138 PKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 78899999999999999999999999999999999998776554
No 16
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.5e-26 Score=200.76 Aligned_cols=180 Identities=17% Similarity=0.235 Sum_probs=134.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|.++|+.||.|..+.| .+|||||+|.+.++|..||+.|||..|.|+.|.|.++..
T Consensus 295 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 295 KDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 368999999999999999999999999999887 379999999999999999999999999999999999875
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCC----------CHHHHHHHhhcCCceEEEe
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRV----------SWQDLKDFMRQVGEVCYAD 144 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~i~~~~ 144 (262)
............. .+..................+..+|+|.|+.... ..++|+++|.+||.|..|.
T Consensus 375 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~ 450 (509)
T TIGR01642 375 GANQATIDTSNGM----APVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIV 450 (509)
T ss_pred CCCCCCccccccc----cccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEE
Confidence 4322211100000 0000000000000111122345689999986321 2367999999999999998
Q ss_pred cccC--------CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 145 AHKR--------HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 145 ~~~~--------~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
|... ..|++||+|++.++|++|+..|||.+|+|+.|.+.+..
T Consensus 451 i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~ 500 (509)
T TIGR01642 451 IPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG 500 (509)
T ss_pred eeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence 8632 35899999999999999999999999999999987754
No 17
>KOG0105|consensus
Probab=99.95 E-value=1.6e-25 Score=158.29 Aligned_cols=167 Identities=42% Similarity=0.713 Sum_probs=132.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
.++|||+|||.++-+.+|+++|-+||.|.+|.|+ ..||||+|+++.+|+.||..-+|..++|..|.|+++.....
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~ 85 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRS 85 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCc
Confidence 5799999999999999999999999999999995 57999999999999999999999999999999999986642
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEe
Q psy10320 78 SQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEF 157 (262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f 157 (262)
...... ..+....+ ..........|.......|.|.+||...++++|++.+.+.|.|+..++... +.+.|+|
T Consensus 86 s~~~~G----~y~gggrg--Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD--g~GvV~~ 157 (241)
T KOG0105|consen 86 SSDRRG----SYSGGGRG--GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD--GVGVVEY 157 (241)
T ss_pred cccccc----ccCCCCCC--CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc--cceeeee
Confidence 222111 00000000 001111122333444678999999999999999999999999999998855 6899999
Q ss_pred cCHHHHHHHHHHhCCcccCC
Q psy10320 158 ESSSDMKKALDKLDNAELNG 177 (262)
Q Consensus 158 ~~~~~a~~a~~~l~g~~~~g 177 (262)
...++.+-|+..|+...+..
T Consensus 158 ~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 158 LRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred eehhhHHHHHHhhccccccC
Confidence 99999999999998776643
No 18
>KOG0106|consensus
Probab=99.95 E-value=1e-26 Score=172.27 Aligned_cols=165 Identities=58% Similarity=0.930 Sum_probs=140.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQERG 82 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~ 82 (262)
|..|||++||+.+.+.+|..||.+||.|.+|.|+.||+||+|.++.+|..|+..||+..|.|..+.|+++.......
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~--- 77 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMKNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR--- 77 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccceeecccceeccCchhhhhcccchhcCceecceeeeeeccccccccc---
Confidence 57899999999999999999999999999999999999999999999999999999999999989999887543322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHH
Q psy10320 83 RRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSD 162 (262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~ 162 (262)
+.++.+ ..........+|..+.+.+.|.+++..+.+.+|.+.|..+|.+....+ ..+++||+|++.++
T Consensus 78 --------g~~~~g-~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 78 --------GRPRGG-DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQED 145 (216)
T ss_pred --------CCCCCC-CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh---hccccceeehhhhh
Confidence 011111 111123445666777889999999999999999999999999855544 67899999999999
Q ss_pred HHHHHHHhCCcccCCceEEE
Q psy10320 163 MKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 163 a~~a~~~l~g~~~~g~~~~v 182 (262)
+..|+..|++..+.++.|++
T Consensus 146 a~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred hhhcchhccchhhcCceeee
Confidence 99999999999999999999
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=2.3e-25 Score=190.90 Aligned_cols=184 Identities=23% Similarity=0.361 Sum_probs=136.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|..|++.|||..|.|+.|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 3789999999999999999999999999999884 68999999999999999999999999999999999764
Q ss_pred CCcccccCC----------CC--------------------CCCCCCCCCCC-------C-----CCCCC----------
Q psy10320 75 IDRSQERGR----------RG--------------------YGSYRAPPPRR-------G-----WGHDR---------- 102 (262)
Q Consensus 75 ~~~~~~~~~----------~~--------------------~~~~~~~~~~~-------~-----~~~~~---------- 102 (262)
......... .. .+....++... . .....
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 321111000 00 00000000000 0 00000
Q ss_pred ---CCCCCC---CCCCCceEEEcCCCCCCC----------HHHHHHHhhcCCceEEEecc-cCCCceEEEEecCHHHHHH
Q psy10320 103 ---DDRYGP---PTRSDHRLIVENLSSRVS----------WQDLKDFMRQVGEVCYADAH-KRHRNEGVVEFESSSDMKK 165 (262)
Q Consensus 103 ---~~~~~~---~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~i~~~~~~-~~~~~~~~v~f~~~~~a~~ 165 (262)
.....+ ...+..+|+|.||..... .++|.++|.+||.|..+.+. ....|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 000001 123456888999954443 36799999999999999887 6678999999999999999
Q ss_pred HHHHhCCcccCCceEEEeecC
Q psy10320 166 ALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 166 a~~~l~g~~~~g~~~~v~~~~ 186 (262)
|+..|||.+|+|+.|.+.+..
T Consensus 426 A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 426 AFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred HHHHhcCcccCCeEEEEEEEc
Confidence 999999999999999997654
No 20
>KOG0144|consensus
Probab=99.94 E-value=9.6e-27 Score=184.33 Aligned_cols=157 Identities=21% Similarity=0.387 Sum_probs=135.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCc-ccCC--ceEEEEEc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGK-SLLG--ERVTVEIA 72 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~-~~~g--~~l~v~~~ 72 (262)
-+|||+-||..++|.||+++|++||.|.+|.|. +|||||.|.+.++|.+|+.+|++. .|-| ..|.|.++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 489999999999999999999999999999983 799999999999999999999996 5555 57888887
Q ss_pred cCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cC
Q psy10320 73 KGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KR 148 (262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~ 148 (262)
....... ..+..|||+-|+..+++.+++++|.+||.|+++.|+ +.
T Consensus 115 d~E~er~-------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~ 163 (510)
T KOG0144|consen 115 DGERERI-------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGL 163 (510)
T ss_pred chhhhcc-------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccccc
Confidence 6532221 114489999999999999999999999999999988 56
Q ss_pred CCceEEEEecCHHHHHHHHHHhCCc-ccCCc--eEEEeecCCCCCC
Q psy10320 149 HRNEGVVEFESSSDMKKALDKLDNA-ELNGR--RIRLIEDKPRGGG 191 (262)
Q Consensus 149 ~~~~~~v~f~~~~~a~~a~~~l~g~-~~~g~--~~~v~~~~~~~~~ 191 (262)
++|+|||.|.+.+.|..||+.|||. .+.|+ +|.|+++.+....
T Consensus 164 sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 164 SRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 7999999999999999999999997 45554 6899999876544
No 21
>KOG0145|consensus
Probab=99.94 E-value=6.4e-26 Score=168.71 Aligned_cols=152 Identities=22% Similarity=0.383 Sum_probs=135.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
|+|+|--||.++|+|||+.+|...|+|+.|++. -||+||.|.++++|++|+..|||..+..+.|+|.++.+.
T Consensus 42 TNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPS 121 (360)
T KOG0145|consen 42 TNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPS 121 (360)
T ss_pred ceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCC
Confidence 789999999999999999999999999999983 699999999999999999999999999999999999864
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCC
Q psy10320 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHR 150 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~ 150 (262)
...- ....|||.+||..++..+|+++|.+||.|.-..++ +..+
T Consensus 122 s~~I--------------------------------k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~sr 169 (360)
T KOG0145|consen 122 SDSI--------------------------------KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSR 169 (360)
T ss_pred hhhh--------------------------------cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceec
Confidence 3221 24589999999999999999999999988765554 6679
Q ss_pred ceEEEEecCHHHHHHHHHHhCCcccCCc--eEEEeecCC
Q psy10320 151 NEGVVEFESSSDMKKALDKLDNAELNGR--RIRLIEDKP 187 (262)
Q Consensus 151 ~~~~v~f~~~~~a~~a~~~l~g~~~~g~--~~~v~~~~~ 187 (262)
|.+||.|+...+|+.||..|||..-.|+ +|.|+++..
T Consensus 170 GVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 170 GVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred ceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCC
Confidence 9999999999999999999999987775 688888754
No 22
>KOG0127|consensus
Probab=99.94 E-value=2.3e-25 Score=181.32 Aligned_cols=183 Identities=25% Similarity=0.380 Sum_probs=145.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
|.+.||||++||+.++.++|.++|+.+|+|..+.+ .+||+||.|+-.|+++.|+..+.+..|.|+.|.|.++
T Consensus 3 ~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 3 KSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred CCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccc
Confidence 45689999999999999999999999999999988 3899999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cC
Q psy10320 73 KGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KR 148 (262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~ 148 (262)
..................-+-. ... ........+...|.|.|||+.+...+|..+|+.||.|..+.|. +.
T Consensus 83 ~~R~r~e~~~~~e~~~veK~~~-----q~~-~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 83 KKRARSEEVEKGENKAVEKPIE-----QKR-PTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred cccccchhcccccchhhhcccc-----cCC-cchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC
Confidence 8765443211000000000000 000 0000011225689999999999999999999999999999988 44
Q ss_pred CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 149 HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 149 ~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
-+|||||.|.+..+|..|++.+||.+|+|++|-|.++-++.
T Consensus 157 lcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 157 LCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred ccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 57999999999999999999999999999999998776654
No 23
>KOG0145|consensus
Probab=99.93 E-value=3.1e-24 Score=159.76 Aligned_cols=184 Identities=22% Similarity=0.342 Sum_probs=141.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCC--ceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLG--ERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 72 (262)
..+|||.+||..+|..||+++|..||.|..-.| ++|.+||.|...++|+.||..|||..-.| .+|.|+++
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 578999999999999999999999998755443 59999999999999999999999987666 58999999
Q ss_pred cCCCcccccCC------CCCCCCCCC---CCCCC---------------CCCCCC-------CCCCCCCCCCceEEEcCC
Q psy10320 73 KGIDRSQERGR------RGYGSYRAP---PPRRG---------------WGHDRD-------DRYGPPTRSDHRLIVENL 121 (262)
Q Consensus 73 ~~~~~~~~~~~------~~~~~~~~~---~~~~~---------------~~~~~~-------~~~~~~~~~~~~l~v~nl 121 (262)
..+........ .+.....+| +.+.+ .+.... ....+.....++|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 87644333211 111111111 00000 000000 111222344689999999
Q ss_pred CCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 122 SSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 122 ~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
.+++.+.-|+++|..||.|..++++ .+++||+||.+.+.++|..||..|||..++++.|.|.+..
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 9999999999999999999999887 5689999999999999999999999999999999998754
No 24
>KOG0107|consensus
Probab=99.93 E-value=4.3e-24 Score=149.89 Aligned_cols=75 Identities=47% Similarity=0.756 Sum_probs=71.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe---eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL---KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
++|+|||+||+..+++.||..+|..||+|..|+| +.|||||+|+++.+|+.|+..|+|..|.|..|.|+++....
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 4799999999999999999999999999999999 58999999999999999999999999999999999998653
No 25
>KOG0127|consensus
Probab=99.92 E-value=6.2e-24 Score=173.06 Aligned_cols=185 Identities=21% Similarity=0.392 Sum_probs=138.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
-+|+|.|||+.+.+.+|+.+|+.||.|.+|.|+ .|||||+|...-+|..||+.+|+..|+|++|.|.|+.++.
T Consensus 118 ~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 118 WRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred ceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 479999999999999999999999999999995 5999999999999999999999999999999999998654
Q ss_pred cccccC-----------------C-CCCCCC-------CCC---C---CCCC-------C--------------CCCCC-
Q psy10320 77 RSQERG-----------------R-RGYGSY-------RAP---P---PRRG-------W--------------GHDRD- 103 (262)
Q Consensus 77 ~~~~~~-----------------~-~~~~~~-------~~~---~---~~~~-------~--------------~~~~~- 103 (262)
.-.... . ....+. ... . .+.+ . .....
T Consensus 198 ~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~ 277 (678)
T KOG0127|consen 198 TYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESD 277 (678)
T ss_pred cccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCccc
Confidence 222110 0 000000 000 0 0000 0 00000
Q ss_pred ---CC--CCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHh---
Q psy10320 104 ---DR--YGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKL--- 170 (262)
Q Consensus 104 ---~~--~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l--- 170 (262)
+. ...-.....+|||.|||+++++++|.+.|++||+|.++.+. +.+.|.|||.|.++.+|+.||...
T Consensus 278 k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa 357 (678)
T KOG0127|consen 278 KKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPA 357 (678)
T ss_pred chhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCcc
Confidence 00 01111224699999999999999999999999999988776 567899999999999999999876
Q ss_pred --CC-cccCCceEEEeecCCC
Q psy10320 171 --DN-AELNGRRIRLIEDKPR 188 (262)
Q Consensus 171 --~g-~~~~g~~~~v~~~~~~ 188 (262)
.| ..|.|+.|.|..+-++
T Consensus 358 ~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 358 SEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred CCCceEEEeccEEeeeeccch
Confidence 23 5788999999776654
No 26
>KOG0124|consensus
Probab=99.92 E-value=1.2e-25 Score=174.91 Aligned_cols=164 Identities=22% Similarity=0.420 Sum_probs=137.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.||+||||.|.+.+.|+.|+..|..||+|+.|.++ +|||||+|+-+|.|+.|++.|||..++|+.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 48999999999999999999999999999999993 8999999999999999999999999999999997433
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cC
Q psy10320 74 GIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KR 148 (262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~ 148 (262)
....... .-+..+.....-+.|||..+.++++++||+..|+.||+|..|.+. +.
T Consensus 192 NmpQAQp---------------------iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~ 250 (544)
T KOG0124|consen 192 NMPQAQP---------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRG 250 (544)
T ss_pred CCcccch---------------------HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCC
Confidence 2110000 000000011123589999999999999999999999999999887 45
Q ss_pred CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 149 HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 149 ~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
++||+|++|.+......|+..||-..++|..|+|..+-
T Consensus 251 HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 251 HKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred ccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 78999999999999999999999999999999986553
No 27
>KOG0107|consensus
Probab=99.91 E-value=4e-23 Score=145.05 Aligned_cols=76 Identities=26% Similarity=0.371 Sum_probs=72.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.+.|||+||+..+++.+|+.+|..||+|..|+|...+.|||||+|+++.+|.+|+..|+|..|+|..|+|+....+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999877644
No 28
>KOG0110|consensus
Probab=99.91 E-value=1.5e-23 Score=175.86 Aligned_cols=162 Identities=25% Similarity=0.442 Sum_probs=139.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEI 71 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 71 (262)
.|+|||.||++.+|.++|...|...|.|..|.|. .|||||+|.++++|+.|++.|+|..++|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3569999999999999999999999999999873 49999999999999999999999999999999999
Q ss_pred ccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----
Q psy10320 72 AKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK---- 147 (262)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---- 147 (262)
+......... ...++......|.|.|+|+.++..+++++|..||.|..+.+..
T Consensus 595 S~~k~~~~~g-----------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k 651 (725)
T KOG0110|consen 595 SENKPASTVG-----------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK 651 (725)
T ss_pred ccCccccccc-----------------------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc
Confidence 9822221111 0111222256899999999999999999999999999998873
Q ss_pred -CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 148 -RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 148 -~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|+|||+|-++.+|..|+.+|.+..+.|+.|.++++..
T Consensus 652 ~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 652 GAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred hhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 3589999999999999999999999999999999987764
No 29
>KOG4206|consensus
Probab=99.89 E-value=1.7e-21 Score=143.18 Aligned_cols=182 Identities=18% Similarity=0.250 Sum_probs=140.7
Q ss_pred eEEEcCCCCCCCHHHHHH----HHhcCCceeEEEe-----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 5 KVYIGGLPYGVRERDLEK----FVKGYGRIRDVIL-----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~----~F~~~G~v~~v~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
||||.||+..+..++|+. +|+.||.|.+|.. .+|.|||.|.+++.|-.|+..|+|..|.|+.+.|+|+..+
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~ 90 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSD 90 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCc
Confidence 999999999999999998 9999999999988 3899999999999999999999999999999999999866
Q ss_pred CcccccCC------CCC------CCCCCCC--CCCCCC---CCCC-CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcC
Q psy10320 76 DRSQERGR------RGY------GSYRAPP--PRRGWG---HDRD-DRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQV 137 (262)
Q Consensus 76 ~~~~~~~~------~~~------~~~~~~~--~~~~~~---~~~~-~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 137 (262)
........ ... .....++ .+.... .+.+ ....++..+...+|+.|+|.+++.+.+..+|.+|
T Consensus 91 sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf 170 (221)
T KOG4206|consen 91 SDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQF 170 (221)
T ss_pred cchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhhC
Confidence 43332211 000 0000000 000000 0000 0113334557799999999999999999999999
Q ss_pred CceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccC-CceEEEeecC
Q psy10320 138 GEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELN-GRRIRLIEDK 186 (262)
Q Consensus 138 g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~-g~~~~v~~~~ 186 (262)
.....+.+.....+.|||+|.+...+..|...++|..+- ...+.|.++.
T Consensus 171 ~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 171 PGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred cccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999888878899999999999999999999998876 6667666553
No 30
>KOG0146|consensus
Probab=99.89 E-value=1.1e-22 Score=152.06 Aligned_cols=188 Identities=18% Similarity=0.357 Sum_probs=142.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCc-ccCC--ceEEEEEcc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGK-SLLG--ERVTVEIAK 73 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~-~~~g--~~l~v~~~~ 73 (262)
.+||||.|...-+|||++.+|..||+|.+|.+ +||||||.|.+.-+|+.||..|+|. ++-| ..|.|+++.
T Consensus 20 rklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~AD 99 (371)
T KOG0146|consen 20 RKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFAD 99 (371)
T ss_pred hhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEecc
Confidence 58999999999999999999999999999998 4899999999999999999999996 5555 588999987
Q ss_pred CCCccccc--------------------------------------------------------------CC--------
Q psy10320 74 GIDRSQER--------------------------------------------------------------GR-------- 83 (262)
Q Consensus 74 ~~~~~~~~--------------------------------------------------------------~~-------- 83 (262)
..+....+ ..
T Consensus 100 TdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~Pv 179 (371)
T KOG0146|consen 100 TDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAAPV 179 (371)
T ss_pred chHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccCCc
Confidence 55432221 00
Q ss_pred CCCCCCCCCC-----------------------CCCCC---------------CCCCC---C------------------
Q psy10320 84 RGYGSYRAPP-----------------------PRRGW---------------GHDRD---D------------------ 104 (262)
Q Consensus 84 ~~~~~~~~~~-----------------------~~~~~---------------~~~~~---~------------------ 104 (262)
.+..+...++ ++... ....+ +
T Consensus 180 ~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aaypa 259 (371)
T KOG0146|consen 180 TPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAYPA 259 (371)
T ss_pred CccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhcch
Confidence 0000000000 00000 00000 0
Q ss_pred C-----------------CCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHH
Q psy10320 105 R-----------------YGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSD 162 (262)
Q Consensus 105 ~-----------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~ 162 (262)
. ..-.....|.|||..||.+..+.+|.++|-.||.|...++. +.++.++||.|+++..
T Consensus 260 ays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~S 339 (371)
T KOG0146|consen 260 AYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPAS 339 (371)
T ss_pred hhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchh
Confidence 0 00012346899999999999999999999999999887765 5678999999999999
Q ss_pred HHHHHHHhCCcccCCceEEEeecCCCCCC
Q psy10320 163 MKKALDKLDNAELNGRRIRLIEDKPRGGG 191 (262)
Q Consensus 163 a~~a~~~l~g~~~~g~~~~v~~~~~~~~~ 191 (262)
++.||.+|||..|+-++|+|...+|+...
T Consensus 340 aQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 340 AQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred HHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 99999999999999999999988877543
No 31
>KOG0123|consensus
Probab=99.89 E-value=7e-22 Score=161.49 Aligned_cols=144 Identities=23% Similarity=0.353 Sum_probs=131.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 78 (262)
..|||| +.+|+..|.++|+.+|+|..|++ +-|||||.|.++++|++||..||...+.|+.|.|.|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd--- 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD--- 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC---
Confidence 579999 99999999999999999999988 3689999999999999999999999999999999998743
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc---cCCCceEEE
Q psy10320 79 QERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH---KRHRNEGVV 155 (262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~---~~~~~~~~v 155 (262)
...+||.||+.+++..+|.++|+.||.|..|.+. ...+|+ ||
T Consensus 76 ----------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV 120 (369)
T KOG0123|consen 76 ----------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FV 120 (369)
T ss_pred ----------------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EE
Confidence 1139999999999999999999999999999887 336788 99
Q ss_pred EecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 156 EFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 156 ~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+|++++.|.+|++.+||..+.|+.|.|.....+
T Consensus 121 ~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 121 QFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred EeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 999999999999999999999999998665543
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=1.2e-19 Score=155.37 Aligned_cols=72 Identities=21% Similarity=0.464 Sum_probs=68.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
++|||+|||+.+++++|+++|+.||.|..|.|. +|||||+|.+.++|..||..||+..|+|+.|.|.++...
T Consensus 205 ~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 205 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred ceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 689999999999999999999999999999883 789999999999999999999999999999999988754
No 33
>KOG0123|consensus
Probab=99.86 E-value=6.8e-21 Score=155.71 Aligned_cols=159 Identities=22% Similarity=0.368 Sum_probs=138.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
+.|||.||++.++..+|.++|+.||+|..|++ ++|| ||+|+++++|++|++.|||..+.|+.|.|........
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 45999999999999999999999999999999 3899 9999999999999999999999999999998876544
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceE
Q psy10320 78 SQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEG 153 (262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~ 153 (262)
....... ....-..++|.+++.++++..|..+|..+|.|..+.+. +.+++++
T Consensus 156 r~~~~~~------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~g 211 (369)
T KOG0123|consen 156 REAPLGE------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFG 211 (369)
T ss_pred hcccccc------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCcc
Confidence 3321110 11223478999999999999999999999999998877 4568999
Q ss_pred EEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 154 ~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
||.|+++++|..|++.|++..+.+..+.|..+..
T Consensus 212 fv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 212 FVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred ceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 9999999999999999999999999999887766
No 34
>KOG0144|consensus
Probab=99.85 E-value=1.3e-20 Score=149.89 Aligned_cols=77 Identities=18% Similarity=0.326 Sum_probs=68.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
...+||.+||.+.-+.+|-..|..||.|...++. +-++.|+||.|++..+|..||..|||..++.++++|.....
T Consensus 424 GanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~ 503 (510)
T KOG0144|consen 424 GANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRD 503 (510)
T ss_pred ccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeec
Confidence 4579999999999999999999999999877655 44578999999999999999999999999999999987665
Q ss_pred CC
Q psy10320 188 RG 189 (262)
Q Consensus 188 ~~ 189 (262)
+.
T Consensus 504 ~~ 505 (510)
T KOG0144|consen 504 RN 505 (510)
T ss_pred cC
Confidence 54
No 35
>KOG0147|consensus
Probab=99.85 E-value=5.7e-21 Score=156.33 Aligned_cols=181 Identities=23% Similarity=0.323 Sum_probs=130.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.|||+||..++|+++|+.+|+.||.|..|.+. +||+||+|.+.++|..|++.|||..+.|+.|+|.......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 48999999999999999999999999998883 8999999999999999999999999999999998776543
Q ss_pred cccccCC----------CCCCCCCCCCCC------------------------------CCCCCCCCCCCCCCC------
Q psy10320 77 RSQERGR----------RGYGSYRAPPPR------------------------------RGWGHDRDDRYGPPT------ 110 (262)
Q Consensus 77 ~~~~~~~----------~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~------ 110 (262)
....... ........+..+ ...+.........|.
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 3222100 000000000000 000000000011111
Q ss_pred -CCCceEEEcCCCCCCC----------HHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCce
Q psy10320 111 -RSDHRLIVENLSSRVS----------WQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRR 179 (262)
Q Consensus 111 -~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~ 179 (262)
.+..++.+.|+=...+ .+++.+.+.++|+|++|.+..+..|+.||.|.+.+.|..|+.+|||.||.|+.
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~ 519 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRM 519 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccce
Confidence 2334555666522211 26788889999999999999888899999999999999999999999999999
Q ss_pred EEEeec
Q psy10320 180 IRLIED 185 (262)
Q Consensus 180 ~~v~~~ 185 (262)
|+..+-
T Consensus 520 Ita~~~ 525 (549)
T KOG0147|consen 520 ITAKYL 525 (549)
T ss_pred eEEEEe
Confidence 987653
No 36
>KOG4207|consensus
Probab=99.84 E-value=3.9e-20 Score=133.42 Aligned_cols=71 Identities=37% Similarity=0.671 Sum_probs=68.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
|++|.|.||.+-+|.++|..+|++||.|.+|.|+ +|||||-|.+..+|+.|++.|+|..++|+.|.|+++.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 6899999999999999999999999999999994 7999999999999999999999999999999999886
No 37
>KOG4205|consensus
Probab=99.84 E-value=2.1e-20 Score=147.64 Aligned_cols=162 Identities=25% Similarity=0.454 Sum_probs=137.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||++|++.+|++.|++.|..||+|.+|.++ +||+||+|++++.+..+| ......|+|+.|.+..+.+
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl-~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVL-NARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheee-cccccccCCccccceeccC
Confidence 5799999999999999999999999999999995 499999999999999988 6666789999999988876
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~ 149 (262)
......... ......|||++||..+++++++++|++||.|..+.+. ...
T Consensus 85 r~~~~~~~~--------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~ 138 (311)
T KOG4205|consen 85 REDQTKVGR--------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRP 138 (311)
T ss_pred ccccccccc--------------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccc
Confidence 543332111 1135689999999999999999999999988877665 457
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCCCC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGGGR 192 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~~~ 192 (262)
++++||.|.+.+.+.+++. .....|+++.+.|..+.|+.-..
T Consensus 139 rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 139 RGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred ccceeeEeccccccceecc-cceeeecCceeeEeeccchhhcc
Confidence 8999999999999999885 67889999999999998876443
No 38
>KOG0147|consensus
Probab=99.84 E-value=4.8e-21 Score=156.78 Aligned_cols=162 Identities=28% Similarity=0.409 Sum_probs=132.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.|||+--|+..+++-+|.+||+.+|.|.+|.| ++|.|||+|.+.+.+..|| .|.|..+.|.+|.|+.....
T Consensus 180 Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEae 258 (549)
T KOG0147|consen 180 RTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAE 258 (549)
T ss_pred HHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHH
Confidence 36677777888999999999999999999998 3899999999999999999 99999999999999887654
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCC
Q psy10320 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHR 150 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~ 150 (262)
............+.. -..+...|||+||..++++++|..+|+.||.|..|.+. +..+
T Consensus 259 knr~a~~s~a~~~k~------------------~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~sk 320 (549)
T KOG0147|consen 259 KNRAANASPALQGKG------------------FTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSK 320 (549)
T ss_pred HHHHHhccccccccc------------------cccchhhhhhcccccCchHHHHhhhccCcccceeeeecccccccccc
Confidence 333211111111000 01112238999999999999999999999999998876 6679
Q ss_pred ceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 151 NEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 151 ~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
||+||+|.+.++|..|++.|||.++.|+.|+|..
T Consensus 321 gfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 321 GFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred CcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 9999999999999999999999999999998843
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=2.9e-19 Score=127.81 Aligned_cols=76 Identities=34% Similarity=0.627 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
++++|||+|||+.+|+++|+++|++||.|..|.|. +|||||+|.+.++|+.||+.||+..|+|+.|.|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 57899999999999999999999999999999883 7999999999999999999999999999999999997
Q ss_pred CCCc
Q psy10320 74 GIDR 77 (262)
Q Consensus 74 ~~~~ 77 (262)
....
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6544
No 40
>KOG0148|consensus
Probab=99.81 E-value=1.4e-19 Score=135.71 Aligned_cols=133 Identities=20% Similarity=0.311 Sum_probs=109.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQERG 82 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~ 82 (262)
..||||+||...+||+-|..||...|.|+.++|... .|.|.++.......
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------e~~v~wa~~p~nQs--- 55 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------ELKVNWATAPGNQS--- 55 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------hhccccccCcccCC---
Confidence 579999999999999999999999999999887532 34555554321100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEe
Q psy10320 83 RRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEF 157 (262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f 157 (262)
-+.......+||+.|..+++-++|++.|..||+|..+.++ .+.+||+||.|
T Consensus 56 ------------------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf 111 (321)
T KOG0148|consen 56 ------------------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSF 111 (321)
T ss_pred ------------------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEec
Confidence 0011114479999999999999999999999999999887 56799999999
Q ss_pred cCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 158 ESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 158 ~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
-+.++|+.||..|+|++|+++.|+.+.+..+.
T Consensus 112 ~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 112 PNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred cchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 99999999999999999999999999987665
No 41
>KOG4676|consensus
Probab=99.81 E-value=9.4e-21 Score=148.75 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=117.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEE-EE
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTV-EI 71 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v-~~ 71 (262)
..|.|.||.+++|.++|+.+|..+|+|.++.|. ...|||.|.+...+..|. .|.+..|-++.|.| -+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 479999999999999999999999999998872 579999999999999998 55555555555554 44
Q ss_pred ccCCCcccccCCCCCC----CCCCCCCCC--------CCCCCCCCCCC-CCCC----------CCceEEEcCCCCCCCHH
Q psy10320 72 AKGIDRSQERGRRGYG----SYRAPPPRR--------GWGHDRDDRYG-PPTR----------SDHRLIVENLSSRVSWQ 128 (262)
Q Consensus 72 ~~~~~~~~~~~~~~~~----~~~~~~~~~--------~~~~~~~~~~~-~~~~----------~~~~l~v~nl~~~~~~~ 128 (262)
................ ....++.+. ..++.+..-+. |+.. ...+++|++|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 4444333321111110 000111110 01111111111 1111 12469999999999999
Q ss_pred HHHHHhhcCCceEEEecc-cCCCceEEEEecCHHHHHHHHHHhCCcccCCc
Q psy10320 129 DLKDFMRQVGEVCYADAH-KRHRNEGVVEFESSSDMKKALDKLDNAELNGR 178 (262)
Q Consensus 129 ~l~~~f~~~g~i~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~ 178 (262)
++.+.|+.+|.|.+..+. +....+|.++|........|+. ++|.++.-.
T Consensus 167 e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k~q 216 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERKRQ 216 (479)
T ss_pred hhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhhhh
Confidence 999999999999988877 4456688899999988888886 677766533
No 42
>KOG4207|consensus
Probab=99.81 E-value=7e-19 Score=127.00 Aligned_cols=74 Identities=31% Similarity=0.439 Sum_probs=69.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
...|.|.||.+.++.++|..+|++||.|.+|.|. .+.+|||||.|.+..+|++|+++|+|..|+|+.|+|..++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4589999999999999999999999999999887 5679999999999999999999999999999999997765
No 43
>KOG1457|consensus
Probab=99.79 E-value=5.2e-18 Score=123.98 Aligned_cols=172 Identities=20% Similarity=0.323 Sum_probs=122.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---------CcEEEEEeCChhhHHHHHHHhcCcccC---CceEEEEE
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---------NGFGFVEFEDYRDADDAVYELNGKSLL---GERVTVEI 71 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~ 71 (262)
.||||.+||.++..-||..+|..|--.+.+.|+ +-+|||.|.+..+|..|+..|||+.|+ +..|.|++
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiEl 114 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIEL 114 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeee
Confidence 599999999999999999999988555555552 369999999999999999999999885 68999999
Q ss_pred ccCCCcccccCCCCCCCCCC-----------------------------CCCCCCCCCCCC-----------CCC-----
Q psy10320 72 AKGIDRSQERGRRGYGSYRA-----------------------------PPPRRGWGHDRD-----------DRY----- 106 (262)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~-----------~~~----- 106 (262)
++...+.......+.++.+. .++......... ...
T Consensus 115 AKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~ 194 (284)
T KOG1457|consen 115 AKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSAN 194 (284)
T ss_pred hhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCccc
Confidence 98654333221111110000 000000000000 000
Q ss_pred ---------CCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-CCCceEEEEecCHHHHHHHHHHhCCccc
Q psy10320 107 ---------GPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-RHRNEGVVEFESSSDMKKALDKLDNAEL 175 (262)
Q Consensus 107 ---------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~~~~v~f~~~~~a~~a~~~l~g~~~ 175 (262)
........+|||.||..++++++|+.+|+.|.....+.+.. ..-.+||++|++.+.|..|+..|+|..+
T Consensus 195 a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 195 AHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred chhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 01112245899999999999999999999998777666653 2346899999999999999999988765
No 44
>KOG1190|consensus
Probab=99.78 E-value=2.7e-17 Score=130.22 Aligned_cols=184 Identities=21% Similarity=0.257 Sum_probs=141.8
Q ss_pred cceEEEcCCC-CCCCHHHHHHHHhcCCceeEEEe---eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLP-YGVRERDLEKFVKGYGRIRDVIL---KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~-~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 78 (262)
.++|.|.||. ..+|.+.|..+|.-||.|..|+| ++..|+|+|.+...|+.|++.|+|..|.|+.|.|.+++.....
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 4788999985 57999999999999999999999 4789999999999999999999999999999999999977655
Q ss_pred cccCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCce-EEEecccCCCceE
Q psy10320 79 QERGRRGYGSY----RAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEV-CYADAHKRHRNEG 153 (262)
Q Consensus 79 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~~~ 153 (262)
...+.....+. ...+-.++..+ ....+...-.+..+|++.|+|..+++++++..|...|.. ......++.+.++
T Consensus 377 lp~egq~d~glT~dy~~spLhrfkkp-gsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kma 455 (492)
T KOG1190|consen 377 LPREGQEDQGLTKDYGNSPLHRFKKP-GSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMA 455 (492)
T ss_pred CCCCCCccccccccCCCCchhhccCc-ccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCccee
Confidence 54432221111 11111111111 111111112236689999999999999999999988855 5556667778899
Q ss_pred EEEecCHHHHHHHHHHhCCcccCCc-eEEEeecCC
Q psy10320 154 VVEFESSSDMKKALDKLDNAELNGR-RIRLIEDKP 187 (262)
Q Consensus 154 ~v~f~~~~~a~~a~~~l~g~~~~g~-~~~v~~~~~ 187 (262)
++.+.+.++|..|+..++...+++. .++|.+.+.
T Consensus 456 l~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 456 LPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 9999999999999999999999876 789988753
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.76 E-value=5.7e-18 Score=144.95 Aligned_cols=134 Identities=25% Similarity=0.338 Sum_probs=100.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC--CceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCccccc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGY--GRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQER 81 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~ 81 (262)
.+|||+||+..+|+++|+++|+.| |+|..|.+.++||||+|.+.++|++||+.||+..|.|+.|.|.++++.......
T Consensus 234 k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~ 313 (578)
T TIGR01648 234 KILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYV 313 (578)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCccccc
Confidence 589999999999999999999999 999999999999999999999999999999999999999999999876443211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceE
Q psy10320 82 GRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVC 141 (262)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~ 141 (262)
......+....... ...........+ ...+++++|+++.+.+..+.++|...|.+.
T Consensus 314 ~~~rg~gg~~~~~~-~~~~~~g~~~sp---~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 314 RYTRGTGGRGKERQ-AARQSLGQVYDP---ASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred ccccccCCCccccc-ccccccCcccCc---cccccccccccccccccchhhccccCcccc
Confidence 10000000000000 000001111222 256899999999999999999999988754
No 46
>KOG4211|consensus
Probab=99.76 E-value=2.6e-17 Score=133.47 Aligned_cols=155 Identities=22% Similarity=0.310 Sum_probs=123.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 78 (262)
.|.+.+||+++|++||.+||+.+ .|..+.+. .|-|||+|.++|++++|+ +.+...+..+.|.|-.+...+.+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Al-kkdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKAL-KKDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHH-HhhHHHhCCceEEEEccCCcccc
Confidence 57889999999999999999999 47777773 689999999999999999 88889999999999988765543
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEE-Eecc----cCCCceE
Q psy10320 79 QERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCY-ADAH----KRHRNEG 153 (262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~----~~~~~~~ 153 (262)
.......... ......|-+.+||+.++++||.++|+..-.+.. +.++ +.+.+.|
T Consensus 90 ~~~~~~g~~s---------------------~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEA 148 (510)
T KOG4211|consen 90 WVMRPGGPNS---------------------SANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEA 148 (510)
T ss_pred ccccCCCCCC---------------------CCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccce
Confidence 2211100000 012448899999999999999999998876655 2222 4578999
Q ss_pred EEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 154 VVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 154 ~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
||.|++.+.|+.||. -|...|+.+-|.|-
T Consensus 149 fVqF~sqe~ae~Al~-rhre~iGhRYIEvF 177 (510)
T KOG4211|consen 149 FVQFESQESAEIALG-RHRENIGHRYIEVF 177 (510)
T ss_pred EEEecCHHHHHHHHH-HHHHhhccceEEee
Confidence 999999999999996 57788888888884
No 47
>KOG0110|consensus
Probab=99.76 E-value=1.9e-17 Score=139.56 Aligned_cols=184 Identities=23% Similarity=0.302 Sum_probs=137.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeC-c-EEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-G-FGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQE 80 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~-g-~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 80 (262)
-+.|+|+|||..+..++|..+|..||.|..|.|+. | .|+|+|.++.+|..|+..|....+...+|.+.|+........
T Consensus 385 ~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~ 464 (725)
T KOG0110|consen 385 DTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTED 464 (725)
T ss_pred cceeeeccCccccccHHHHHHhhcccccceeecCcccceeeeeecCccchHHHHHHhchhhhccCccccccChhhhccCC
Confidence 37899999999999999999999999999998863 3 499999999999999999999999999999988875544321
Q ss_pred cCC--CCCCCCCC----C-----CCCCCCCCCCCCCCC-------CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEE
Q psy10320 81 RGR--RGYGSYRA----P-----PPRRGWGHDRDDRYG-------PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCY 142 (262)
Q Consensus 81 ~~~--~~~~~~~~----~-----~~~~~~~~~~~~~~~-------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~ 142 (262)
... -....... + .....-......... ......+.|||.||++.++.+++...|..+|.|..
T Consensus 465 pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS 544 (725)
T KOG0110|consen 465 PKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLS 544 (725)
T ss_pred ccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEE
Confidence 000 00000000 0 000000000000000 00111234999999999999999999999999999
Q ss_pred Eeccc--C------CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 143 ADAHK--R------HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 143 ~~~~~--~------~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
+.|.. + +.|+|||+|++.++|+.|+..|+|..++|..|.|..+.
T Consensus 545 ~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 545 IEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred EEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 87762 2 23999999999999999999999999999999998876
No 48
>KOG1548|consensus
Probab=99.75 E-value=8.7e-17 Score=124.87 Aligned_cols=182 Identities=20% Similarity=0.279 Sum_probs=131.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCce
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRD--------VIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGER 66 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 66 (262)
+.|.|||.|||.++|.+++.++|.+||.|.. |+| .+|=|+|.|-..+++..|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4678999999999999999999999997742 344 3899999999999999999999999999999
Q ss_pred EEEEEccCCCcccccCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCceEEEcCCCC----CCC-------H
Q psy10320 67 VTVEIAKGIDRSQERGRRGYGSYRA--------PPPRRGWGHDRDDRYGPPTRSDHRLIVENLSS----RVS-------W 127 (262)
Q Consensus 67 l~v~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~----~~~-------~ 127 (262)
|.|+.++...+..........+... ....-.|.+.. .........++|.+.|+-. ..+ .
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~--~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR--DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc--cccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 9999887543222111110000000 00001111111 1112233456888888732 122 3
Q ss_pred HHHHHHhhcCCceEEEecc-cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 128 QDLKDFMRQVGEVCYADAH-KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 128 ~~l~~~f~~~g~i~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
++|.+.+.+||.|..|.+. ..+.|.+.|.|.+.++|..||..|+|.+|+|+.|.....
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 6788889999999999888 456799999999999999999999999999999986543
No 49
>KOG0113|consensus
Probab=99.74 E-value=6.2e-17 Score=123.32 Aligned_cols=73 Identities=27% Similarity=0.578 Sum_probs=68.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
-+||||+-|++.++|..|+..|+.||+|+.|.| ++|||||+|+++.++..|....+|..|+|+.|.|.+-..
T Consensus 101 y~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 101 YKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred cceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 379999999999999999999999999999998 489999999999999999999999999999999987764
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 181 R 181 (335)
T KOG0113|consen 181 R 181 (335)
T ss_pred c
Confidence 3
No 50
>KOG4212|consensus
Probab=99.74 E-value=1.8e-16 Score=126.77 Aligned_cols=178 Identities=26% Similarity=0.376 Sum_probs=132.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHh-cCCceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVK-GYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.+||+|||+++.+.+|+.+|. +.|+|..|.+ .+|||.|+|+++|.+++|++.||...+.|++|.|+-..+..
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q 125 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQ 125 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchh
Confidence 599999999999999999997 6899999998 48999999999999999999999999999999998776543
Q ss_pred cccccCC-------------------CCCCCCC-------CCCCCC---------C--CCCCC-----------------
Q psy10320 77 RSQERGR-------------------RGYGSYR-------APPPRR---------G--WGHDR----------------- 102 (262)
Q Consensus 77 ~~~~~~~-------------------~~~~~~~-------~~~~~~---------~--~~~~~----------------- 102 (262)
.+..... ....... +.+... . ..+..
T Consensus 126 ~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr 205 (608)
T KOG4212|consen 126 RDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLR 205 (608)
T ss_pred hhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhh
Confidence 2221100 0000000 000000 0 00000
Q ss_pred C-CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCC
Q psy10320 103 D-DRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNG 177 (262)
Q Consensus 103 ~-~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g 177 (262)
+ ....||. ...+||.||.+.+....|.+.|.-.|.|..+.+- +..+++|.++|+++-+|.+||..+++.-+..
T Consensus 206 ~~h~f~pPl--~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~ 283 (608)
T KOG4212|consen 206 SLHIFSPPL--HNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFD 283 (608)
T ss_pred hccCCCCCc--cceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCcc
Confidence 0 0112333 3479999999999999999999999999888664 6678999999999999999999999876666
Q ss_pred ceEEEee
Q psy10320 178 RRIRLIE 184 (262)
Q Consensus 178 ~~~~v~~ 184 (262)
++..+..
T Consensus 284 ~~~~~Rl 290 (608)
T KOG4212|consen 284 RRMTVRL 290 (608)
T ss_pred ccceeec
Confidence 6655543
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.73 E-value=2.3e-17 Score=125.93 Aligned_cols=74 Identities=26% Similarity=0.424 Sum_probs=69.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
|+.++|||+|||+.+|+++|+++|+.||+|.+|.| .+|||||+|.++++|+.|| .|+|..|.|+.|.|.++...
T Consensus 2 ~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 2 MQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccCC
Confidence 56789999999999999999999999999999999 3799999999999999999 69999999999999998754
No 52
>KOG0121|consensus
Probab=99.73 E-value=7.4e-18 Score=112.43 Aligned_cols=74 Identities=28% Similarity=0.533 Sum_probs=69.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.+|||||+||+..+||++|.++|+++|+|..|.| +-|||||+|-..++|+.|+..++|..++.+.|.|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 5799999999999999999999999999999998 36999999999999999999999999999999999876
Q ss_pred CC
Q psy10320 74 GI 75 (262)
Q Consensus 74 ~~ 75 (262)
.-
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 43
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.72 E-value=4e-17 Score=103.01 Aligned_cols=63 Identities=40% Similarity=0.800 Sum_probs=59.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEE
Q psy10320 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVT 68 (262)
Q Consensus 6 l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 68 (262)
|||+|||+++|+++|+++|+.||.|..+.+. +++|||+|.+.++|+.|++.|+|..|.|+.|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999998883 68999999999999999999999999999874
No 54
>KOG0113|consensus
Probab=99.71 E-value=3.6e-16 Score=119.21 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
++-+||||+-|++++++..|+..|+.||+|..+.++ +.++|||||+|++..+...|.+..+|..|+|+.|.|...
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 457899999999999999999999999999998776 678999999999999999999999999999999988655
Q ss_pred C
Q psy10320 186 K 186 (262)
Q Consensus 186 ~ 186 (262)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 4
No 55
>KOG1190|consensus
Probab=99.71 E-value=7.5e-16 Score=122.18 Aligned_cols=183 Identities=20% Similarity=0.328 Sum_probs=132.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-e--Cc-EEEEEeCChhhHHHHHHHhcCcccCC--ceEEEEEccCCC--
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-K--NG-FGFVEFEDYRDADDAVYELNGKSLLG--ERVTVEIAKGID-- 76 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-~--~g-~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~-- 76 (262)
.++|+|+-+.+|-|.|.++|++||.|..|.- . .+ .|+|+|.+.+.|+.|...|+|..|.. +.|.|.+++-..
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~Ln 231 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLN 231 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccce
Confidence 5789999999999999999999999988765 2 23 58999999999999999999997754 466666665321
Q ss_pred --------cccccCCCCCC---------------CC-------CCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCC-CCC
Q psy10320 77 --------RSQERGRRGYG---------------SY-------RAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS-SRV 125 (262)
Q Consensus 77 --------~~~~~~~~~~~---------------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~-~~~ 125 (262)
.+.....-+.+ .. ..-+.............+.+. .++.|.|.||. +.+
T Consensus 232 vKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~-~n~vllvsnln~~~V 310 (492)
T KOG1190|consen 232 VKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS-ANVVLLVSNLNEEAV 310 (492)
T ss_pred eeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCC-CceEEEEecCchhcc
Confidence 11111000000 00 000000000000111122222 25678888875 568
Q ss_pred CHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 126 SWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 126 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
|.+.|..+|.-||.|..|.|..+++..|.|+|.+...|+-|+.+|+|..+.|+.|+|...+..
T Consensus 311 T~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 311 TPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred chhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 999999999999999999999888899999999999999999999999999999999888754
No 56
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.8e-15 Score=106.55 Aligned_cols=80 Identities=29% Similarity=0.410 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|++||.|..+.+. +.++++|||+|++.++|+.|++.|++..|+|+.|.|..+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 346689999999999999999999999999999886 356899999999999999999999999999999999998
Q ss_pred CCCCC
Q psy10320 186 KPRGG 190 (262)
Q Consensus 186 ~~~~~ 190 (262)
.++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76543
No 57
>KOG0114|consensus
Probab=99.67 E-value=4.4e-16 Score=100.07 Aligned_cols=74 Identities=27% Similarity=0.454 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
..-|||.|||+.+|.+++.++|.+||.|..|.| .+|.|||.|++..+|..|+..|+|..+.++.|.|-+..+..
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 457999999999999999999999999999999 48999999999999999999999999999999999887543
No 58
>KOG0124|consensus
Probab=99.66 E-value=6.7e-15 Score=115.35 Aligned_cols=73 Identities=21% Similarity=0.459 Sum_probs=67.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.+|||..+.++++|+||+.+|+.||+|..|.+ .+||+||+|.+......||..||-..++|+.|.|..+...
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 58999999999999999999999999999999 3899999999999999999999999999999999877654
Q ss_pred C
Q psy10320 76 D 76 (262)
Q Consensus 76 ~ 76 (262)
.
T Consensus 291 P 291 (544)
T KOG0124|consen 291 P 291 (544)
T ss_pred C
Confidence 3
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.64 E-value=1.1e-15 Score=96.29 Aligned_cols=63 Identities=41% Similarity=0.689 Sum_probs=57.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEE
Q psy10320 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVT 68 (262)
Q Consensus 6 l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 68 (262)
|||+|||+.+++++|.++|+.||.|..+.+. +++|||+|.++++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999883 58999999999999999999999999999874
No 60
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.64 E-value=1.5e-15 Score=114.18 Aligned_cols=73 Identities=23% Similarity=0.338 Sum_probs=68.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
+.||||+||++.+|+++|+++|+.||+|.+|.|. .++|||+|.++++|+.|+ .|+|..|.++.|.|..+....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y~ 82 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQYE 82 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcccc
Confidence 5699999999999999999999999999999994 589999999999999999 999999999999999877643
No 61
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.63 E-value=6.2e-15 Score=120.27 Aligned_cols=77 Identities=26% Similarity=0.488 Sum_probs=69.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCC--ceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLG--ERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|++||+|..|.|. ++||||+|.+.++|++||+.||+..+.+ +.|.|.++
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a 272 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLA 272 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 4789999999999999999999999999998883 5899999999999999999999998866 68999988
Q ss_pred cCCCccc
Q psy10320 73 KGIDRSQ 79 (262)
Q Consensus 73 ~~~~~~~ 79 (262)
.......
T Consensus 273 ~~~~~~~ 279 (346)
T TIGR01659 273 EEHGKAK 279 (346)
T ss_pred Ccccccc
Confidence 8665444
No 62
>KOG0120|consensus
Probab=99.63 E-value=3.6e-15 Score=123.98 Aligned_cols=175 Identities=19% Similarity=0.273 Sum_probs=125.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
...+||+|||..++++++.|++..||.+....+ .+||||.+|.++.....|+..|||+.+.++.|.|+.+..
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 358999999999999999999999999887766 489999999999999999999999999999999998876
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCC--CCCC-CH-------HHHHHHhhcCCceEEEe
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENL--SSRV-SW-------QDLKDFMRQVGEVCYAD 144 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl--~~~~-~~-------~~l~~~f~~~g~i~~~~ 144 (262)
.......+..... . ....-.. ...+....+...|.+.|+ |.++ .+ ++++..+..||.|..|.
T Consensus 369 g~~~~~~~~~~~~----~---~~~~i~~-~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ 440 (500)
T KOG0120|consen 369 GASNANVNFNISQ----S---QVPGIPL-LMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVE 440 (500)
T ss_pred cchhccccCCccc----c---ccccchh-hhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEe
Confidence 4433322221000 0 0000000 000111222334444443 1111 12 45777788899999998
Q ss_pred cccC--------CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 145 AHKR--------HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 145 ~~~~--------~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
+... ..|..||+|++.++++.|+++|+|.+|.|+.+...+.
T Consensus 441 ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 441 IPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred cCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 7632 3678899999999999999999999999999877654
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=1.6e-14 Score=116.29 Aligned_cols=133 Identities=30% Similarity=0.495 Sum_probs=101.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC-
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG- 74 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~- 74 (262)
++|||+|||+.+|+++|.++|..||.|..|.+. +|+|||+|.++++|..|+..++|..|.|+.|.|.+...
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~ 195 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPA 195 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccc
Confidence 799999999999999999999999999888873 79999999999999999999999999999999999764
Q ss_pred -CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc
Q psy10320 75 -IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH 146 (262)
Q Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~ 146 (262)
......... ......................+++.+++..+...++...|..+|.+....+.
T Consensus 196 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 196 SQPRSELSNN----------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred cccccccccc----------cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 110000000 00000000011112223345689999999999999999999999998666655
No 64
>KOG0130|consensus
Probab=99.61 E-value=1.6e-15 Score=102.25 Aligned_cols=74 Identities=28% Similarity=0.539 Sum_probs=69.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
--|||.++.+.+||++|.+.|..||+|+.|.+. +|||+|+|++.++|+.|+..|||..+.|+.|.|.|+...
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 368999999999999999999999999999983 899999999999999999999999999999999999865
Q ss_pred Cc
Q psy10320 76 DR 77 (262)
Q Consensus 76 ~~ 77 (262)
.+
T Consensus 153 gp 154 (170)
T KOG0130|consen 153 GP 154 (170)
T ss_pred CC
Confidence 43
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=4e-15 Score=120.97 Aligned_cols=73 Identities=26% Similarity=0.406 Sum_probs=68.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee----CcEEEEEeCCh--hhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK----NGFGFVEFEDY--RDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~--~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
+.+||||||++.+|+++|..+|..||.|..|.|+ +|||||+|... .++.+||..|||..|.|+.|.|..+++.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~ 88 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEH 88 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHH
Confidence 4699999999999999999999999999999996 79999999987 6899999999999999999999999854
No 66
>KOG0105|consensus
Probab=99.60 E-value=1e-14 Score=103.88 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=72.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc--CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK--RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~--~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
.+.|||+|||.++.+.+|+++|-+||.|..|.+.. ....||||+|+++.+|..||..-+|..++|+.|+|++......
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~ 85 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRS 85 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCc
Confidence 56899999999999999999999999999998873 4578999999999999999999999999999999999876544
Q ss_pred CC
Q psy10320 191 GR 192 (262)
Q Consensus 191 ~~ 192 (262)
..
T Consensus 86 s~ 87 (241)
T KOG0105|consen 86 SS 87 (241)
T ss_pred cc
Confidence 33
No 67
>KOG0122|consensus
Probab=99.60 E-value=4.6e-15 Score=110.21 Aligned_cols=73 Identities=36% Similarity=0.509 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|-|.||+.+++|++|+++|.+||.|..|.| .+|||||.|.+.++|.+||..|||.-++.-.|.|+|+++
T Consensus 189 ~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP 268 (270)
T KOG0122|consen 189 EATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKP 268 (270)
T ss_pred cceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCC
Confidence 478999999999999999999999999999988 389999999999999999999999999999999999986
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 269 ~ 269 (270)
T KOG0122|consen 269 S 269 (270)
T ss_pred C
Confidence 4
No 68
>KOG0125|consensus
Probab=99.59 E-value=4.5e-15 Score=114.70 Aligned_cols=79 Identities=29% Similarity=0.580 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
.+|+|.|||+..-+.||+.+|.+||+|.+|.| +|||+||.|++++||++|-++|||..+.|++|.|..+.....
T Consensus 97 kRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~ 176 (376)
T KOG0125|consen 97 KRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVH 176 (376)
T ss_pred ceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhc
Confidence 48999999999999999999999999999999 499999999999999999999999999999999999987755
Q ss_pred ccccC
Q psy10320 78 SQERG 82 (262)
Q Consensus 78 ~~~~~ 82 (262)
.+...
T Consensus 177 n~K~~ 181 (376)
T KOG0125|consen 177 NKKKK 181 (376)
T ss_pred cCCcc
Confidence 44443
No 69
>KOG1456|consensus
Probab=99.56 E-value=7.7e-14 Score=109.72 Aligned_cols=162 Identities=22% Similarity=0.254 Sum_probs=129.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHH--hcCcccCCceEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYE--LNGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~--l~~~~~~g~~l~v~~~~~~~~~ 78 (262)
+..|+|.||-..++|.+|.+.++.||.|..+.+. +..|+|+|++.+.|+.++.. -+...+.|+.-.+.++......
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~ 110 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIE 110 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEeccccceeeeeeccccchhhheehhccCcccccCchhhcccchhhhhc
Confidence 4589999999999999999999999999998874 88999999999999999833 2335777887777777543332
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceE--EEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEE
Q psy10320 79 QERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRL--IVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVE 156 (262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~ 156 (262)
.... .+..++..| .|-|.-+.++.+-|..++...|+|..+.|..++--.|.||
T Consensus 111 R~g~-------------------------es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVE 165 (494)
T KOG1456|consen 111 RPGD-------------------------ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVE 165 (494)
T ss_pred cCCC-------------------------CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEe
Confidence 2210 011112233 3567778899999999999999999999998777789999
Q ss_pred ecCHHHHHHHHHHhCCcccCC--ceEEEeecCCCC
Q psy10320 157 FESSSDMKKALDKLDNAELNG--RRIRLIEDKPRG 189 (262)
Q Consensus 157 f~~~~~a~~a~~~l~g~~~~g--~~~~v~~~~~~~ 189 (262)
|++.+.|++|.+.|||..|+. +.|+|++++|..
T Consensus 166 Fdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 166 FDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred echhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 999999999999999998764 578888888753
No 70
>KOG0129|consensus
Probab=99.56 E-value=1e-13 Score=113.61 Aligned_cols=155 Identities=20% Similarity=0.294 Sum_probs=114.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe----------eCc---EEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL----------KNG---FGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i----------~~g---~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
..+||||+||+.++|++|...|..||.+..=.- ++| |+|+.|+++..++..|.++.- ....+.+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~yf 335 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNYYF 335 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccceEE
Confidence 579999999999999999999999997632111 367 999999999998887766543 4455555
Q ss_pred EEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhh-cCCceEEEecc--
Q psy10320 70 EIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMR-QVGEVCYADAH-- 146 (262)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g~i~~~~~~-- 146 (262)
..+....+.++-+. .+...+..........+.++..|||||+||.-++.++|..+|+ -||.|+.+.|.
T Consensus 336 ~vss~~~k~k~VQI---------rPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD 406 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQI---------RPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTD 406 (520)
T ss_pred EEecCcccccceeE---------EeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccC
Confidence 55554444332111 0111111111223444566788999999999999999999998 89999988775
Q ss_pred ---cCCCceEEEEecCHHHHHHHHHH
Q psy10320 147 ---KRHRNEGVVEFESSSDMKKALDK 169 (262)
Q Consensus 147 ---~~~~~~~~v~f~~~~~a~~a~~~ 169 (262)
+.++|.|-|.|.+.....+||.+
T Consensus 407 ~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 407 PKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cccCCCCCcceeeecccHHHHHHHhh
Confidence 56899999999999999999964
No 71
>KOG0117|consensus
Probab=99.56 E-value=9.2e-15 Score=117.34 Aligned_cols=76 Identities=30% Similarity=0.528 Sum_probs=72.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQE 80 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 80 (262)
.|||+||+.++|++.|+++|+.||.|..|+..+.||||.|.+-++|.+||+.|||..|+|..|.|.++++..+.+.
T Consensus 261 vLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~ 336 (506)
T KOG0117|consen 261 VLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKK 336 (506)
T ss_pred eeeeeccchhhhHHHHHHHHHhccceEEeecccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhcc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999998765543
No 72
>smart00362 RRM_2 RNA recognition motif.
Probab=99.56 E-value=3.1e-14 Score=89.90 Aligned_cols=65 Identities=40% Similarity=0.720 Sum_probs=61.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
+|||+|||+.+++++|+++|..||.|..+.+. +++|||+|.+.++|+.|+..+++..|.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 69999999999999999999999999998884 389999999999999999999999999999876
No 73
>KOG1456|consensus
Probab=99.55 E-value=1.1e-12 Score=103.37 Aligned_cols=179 Identities=21% Similarity=0.271 Sum_probs=130.9
Q ss_pred EcCCCCCCCHHHHHHHHhcCCceeEEEeeC---cEEEEEeCChhhHHHHHHHhcCcccC-C-ceEEEEEccCCCccccc-
Q psy10320 8 IGGLPYGVRERDLEKFVKGYGRIRDVILKN---GFGFVEFEDYRDADDAVYELNGKSLL-G-ERVTVEIAKGIDRSQER- 81 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~---g~afV~f~~~~~a~~a~~~l~~~~~~-g-~~l~v~~~~~~~~~~~~- 81 (262)
|-|--+.+|.+.|.++....|+|..|.|.+ -.|.|||++.+.|++|.+.|||..|. | +.|+|+++++......+
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~kn 206 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQKN 206 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeeec
Confidence 445557899999999999999999999842 37999999999999999999998774 4 58999999875321111
Q ss_pred ----CC-------CCCC-------CCCC----------------------------CCCCCCCCCCCC---CCCCCCCCC
Q psy10320 82 ----GR-------RGYG-------SYRA----------------------------PPPRRGWGHDRD---DRYGPPTRS 112 (262)
Q Consensus 82 ----~~-------~~~~-------~~~~----------------------------~~~~~~~~~~~~---~~~~~~~~~ 112 (262)
+. .... .... +++..+...... ........+
T Consensus 207 d~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~ 286 (494)
T KOG1456|consen 207 DKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAP 286 (494)
T ss_pred CCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCCC
Confidence 00 0000 0000 000000000000 000112334
Q ss_pred CceEEEcCCCC-CCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSS-RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
.+.+.|.+|.. .++.+.|..+|-.||.|..+.++....|-|.|++.+....+.|+.+||+..+-|.+|.|...+
T Consensus 287 g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 287 GCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 67899999986 467788999999999999999999899999999999999999999999999999999887654
No 74
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.54 E-value=2.2e-14 Score=90.34 Aligned_cols=66 Identities=38% Similarity=0.647 Sum_probs=61.4
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEE
Q psy10320 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181 (262)
Q Consensus 116 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 181 (262)
|||+|||..+++++|.++|++||.|..+.+.. ...++|||+|.+.++|..|++.|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999998888774 4678999999999999999999999999999875
No 75
>KOG4212|consensus
Probab=99.53 E-value=1.1e-12 Score=105.29 Aligned_cols=73 Identities=33% Similarity=0.585 Sum_probs=66.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.|+|+|.|||.++|++.|++-|..||.|.+++|....+..+.|.|.++++|+.|+..|+|..+.|+.|.|.++
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 5789999999999999999999999999999997555556699999999999999999999999999998763
No 76
>KOG0149|consensus
Probab=99.52 E-value=2.3e-14 Score=106.13 Aligned_cols=70 Identities=26% Similarity=0.589 Sum_probs=62.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
|+||||||++.++.++|+++|+.||+|.+..| ++||+||.|.+.+.|.+|+ .=.+-.|+|++..|.++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc-~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRAC-KDPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHh-cCCCCcccccccccchhhh
Confidence 79999999999999999999999999998777 4899999999999999999 4445689999988888764
No 77
>KOG0125|consensus
Probab=99.51 E-value=9.6e-14 Score=107.44 Aligned_cols=79 Identities=24% Similarity=0.396 Sum_probs=73.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc---cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH---KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
....+.|+|.|+|+...+.||+.+|.+||+|.+|.|+ ..++||+||+|++.++|.+|-++|||..+.|++|.|+.+.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3446799999999999999999999999999999998 4578999999999999999999999999999999998887
Q ss_pred CC
Q psy10320 187 PR 188 (262)
Q Consensus 187 ~~ 188 (262)
.+
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 78
>KOG0109|consensus
Probab=99.50 E-value=3e-14 Score=108.49 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=73.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQE 80 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 80 (262)
.|+|+|+||.+.++.+||++.|++||+|.+|.|.++|+||.|...++|..|+..|||..|.|+++.|+++...-....
T Consensus 78 stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 78 STKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred ccccccCCCCccccCHHHhhhhcccCCceeeeeecceeEEEEeeccchHHHHhcccccccccceeeeeeeccccccCC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999986644443
No 79
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.50 E-value=1.6e-13 Score=82.12 Aligned_cols=53 Identities=34% Similarity=0.647 Sum_probs=48.9
Q ss_pred HHHHHhcCCceeEEEee--C-cEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 20 LEKFVKGYGRIRDVILK--N-GFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 20 l~~~F~~~G~v~~v~i~--~-g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
|.++|++||+|..|.+. + ++|||+|.+.++|+.|++.|||..|.|+.|.|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999995 3 99999999999999999999999999999999985
No 80
>KOG0126|consensus
Probab=99.50 E-value=2.6e-15 Score=106.58 Aligned_cols=76 Identities=37% Similarity=0.647 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+..|||||||+.+||.||..+|+.||+|++|.+ ++||||+.|++..+...|+..|||..|.|+.|.|.....
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 468999999999999999999999999999998 389999999999999999999999999999999998876
Q ss_pred CCcc
Q psy10320 75 IDRS 78 (262)
Q Consensus 75 ~~~~ 78 (262)
....
T Consensus 115 Yk~p 118 (219)
T KOG0126|consen 115 YKKP 118 (219)
T ss_pred ccCC
Confidence 5443
No 81
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.49 E-value=3e-13 Score=85.78 Aligned_cols=67 Identities=42% Similarity=0.754 Sum_probs=62.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEE
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEI 71 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 71 (262)
+|+|+|||+.+++++|.++|+.||.|..+.+. .++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999998884 58999999999999999999999999999998864
No 82
>KOG0111|consensus
Probab=99.48 E-value=3.4e-14 Score=103.97 Aligned_cols=75 Identities=36% Similarity=0.631 Sum_probs=70.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.|||||+|...+||..|...|-+||.|++|.++ +|||||+|...|+|..||..||+..+.|+.|.|.++++.
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 599999999999999999999999999999994 899999999999999999999999999999999999976
Q ss_pred Ccc
Q psy10320 76 DRS 78 (262)
Q Consensus 76 ~~~ 78 (262)
...
T Consensus 91 kik 93 (298)
T KOG0111|consen 91 KIK 93 (298)
T ss_pred ccc
Confidence 543
No 83
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=6.4e-13 Score=101.81 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=67.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccC--CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR--HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||+.+++++|+++|+.||.|..+.+... .+++|||+|.++++|..||. |+|..|.|+.|.|..+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 458999999999999999999999999999998743 57999999999999999995 999999999999988753
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=3.3e-13 Score=84.79 Aligned_cols=63 Identities=43% Similarity=0.729 Sum_probs=58.3
Q ss_pred EcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEE
Q psy10320 8 IGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVE 70 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 70 (262)
|+|||..+++++|+++|+.||.|..+.+. +++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999883 4799999999999999999999999999998773
No 85
>KOG0122|consensus
Probab=99.45 E-value=1.5e-12 Score=97.05 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
...++|-|.||+.++++.+|+++|..||.|..+.+. +.++|||||.|...++|.+||..|||.-++.-.|.|+.+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 346789999999999999999999999999998876 678999999999999999999999999999999999999
Q ss_pred CCC
Q psy10320 186 KPR 188 (262)
Q Consensus 186 ~~~ 188 (262)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 86
>KOG0130|consensus
Probab=99.45 E-value=3.2e-13 Score=91.27 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=71.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
.+.|||.++...+++++|.+.|..||+|..+++. +.-+|||+|+|++..+|++|++++||..+.|..|.|.++--
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 5799999999999999999999999999998876 55689999999999999999999999999999999988865
Q ss_pred CCC
Q psy10320 188 RGG 190 (262)
Q Consensus 188 ~~~ 190 (262)
.+.
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 544
No 87
>KOG0120|consensus
Probab=99.45 E-value=5.2e-13 Score=111.26 Aligned_cols=174 Identities=16% Similarity=0.278 Sum_probs=130.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC-----------C-ceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGY-----------G-RIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~-----------G-~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
-.+||+++|+.++++.+..+|..- | .|..+.+ .+++|||+|.+.++|..|+ .+++..|.|..+.+
T Consensus 176 ~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~-~~~~~~f~g~~~~~ 254 (500)
T KOG0120|consen 176 RRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAM-ALDGIIFEGRPLKI 254 (500)
T ss_pred hhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhh-cccchhhCCCCcee
Confidence 378999999999999999999642 3 3666666 4899999999999999999 99999999998887
Q ss_pred EEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc---
Q psy10320 70 EIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH--- 146 (262)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--- 146 (262)
.-............ ...+ ...-.............+.++|++||..+++.++.++...||.+....+.
T Consensus 255 ~r~~d~~~~p~~~~--------~~~~-~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 255 RRPHDYQPVPGITL--------SPSQ-LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred cccccccCCccchh--------hhcc-ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 64443221111000 0000 00000001111123345689999999999999999999999988766554
Q ss_pred --cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 147 --KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 147 --~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
+.+++|||.+|.++..+..|++.|||+.+++..|.|..+-.
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~ 368 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIV 368 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhc
Confidence 56789999999999999999999999999999999876654
No 88
>KOG1365|consensus
Probab=99.44 E-value=1.9e-13 Score=107.85 Aligned_cols=176 Identities=19% Similarity=0.241 Sum_probs=119.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcC----CceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGY----GRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
-|-+.+||+++|+.||.+||..- |.+..|.+ ..|-|||.|..+++|+.|+ .-|...++-+.|.+-.+.
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL-~khrq~iGqRYIElFRST 241 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFAL-RKHRQNIGQRYIELFRST 241 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHH-HHHHHHHhHHHHHHHHHh
Confidence 46678999999999999999632 22333333 2689999999999999999 556666666666654443
Q ss_pred CCCcccccCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCc-eEE--Eecc-
Q psy10320 74 GIDRSQERGR---RGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGE-VCY--ADAH- 146 (262)
Q Consensus 74 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~--~~~~- 146 (262)
..+-...-.. .+...... .......+....|+.....+|.+.+||+.++.++|-++|..|.. |.. +++.
T Consensus 242 aaEvqqvlnr~~s~pLi~~~~----sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~ 317 (508)
T KOG1365|consen 242 AAEVQQVLNREVSEPLIPGLT----SPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVL 317 (508)
T ss_pred HHHHHHHHHhhccccccCCCC----CCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEE
Confidence 2221111100 01111000 00111113344555555678999999999999999999998873 222 4443
Q ss_pred ---cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 147 ---KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 147 ---~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
+.+.|.|||+|.+.+.|..|....+.+....+.|.|-.+
T Consensus 318 N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 318 NGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred cCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 667899999999999999999988888888888888543
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=8.6e-13 Score=82.98 Aligned_cols=66 Identities=33% Similarity=0.562 Sum_probs=59.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEecccC----CCceEEEEecCHHHHHHHHHHhCCcccCCceEE
Q psy10320 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR----HRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181 (262)
Q Consensus 116 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~----~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 181 (262)
|||+|||..+++++|.++|..+|.|..+.+... .+++|||+|.+.++|..|+..+++..++|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 789999999999999999999999999988744 478999999999999999999999999999874
No 90
>KOG0114|consensus
Probab=99.41 E-value=2.7e-12 Score=82.74 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc--cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH--KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
+..+..|||.|||+.++.+++.++|..||.|..+.+- ...+|-|||.|++..+|.+|+++|.|..+.++.+.|.+-.+
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 3345689999999999999999999999999999875 45689999999999999999999999999999999876654
No 91
>KOG0121|consensus
Probab=99.40 E-value=1.2e-12 Score=87.68 Aligned_cols=77 Identities=22% Similarity=0.225 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..++|||+||...+++++|.++|..+|+|..|.+- ..+.|+|||+|...++|..|+..++|..++.+.|.+..+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46799999999999999999999999999887553 4578999999999999999999999999999999998765
Q ss_pred CC
Q psy10320 187 PR 188 (262)
Q Consensus 187 ~~ 188 (262)
.-
T Consensus 115 GF 116 (153)
T KOG0121|consen 115 GF 116 (153)
T ss_pred cc
Confidence 43
No 92
>PLN03213 repressor of silencing 3; Provisional
Probab=99.39 E-value=1.9e-12 Score=105.68 Aligned_cols=75 Identities=24% Similarity=0.357 Sum_probs=69.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-cCCCceEEEEecCH--HHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-KRHRNEGVVEFESS--SDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-~~~~~~~~v~f~~~--~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
...|||+||++.+++++|...|..||.|..+.|+ ...+|||||+|... .++.+||..|||..+.|+.|+|..+++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 5689999999999999999999999999999988 22389999999987 789999999999999999999998875
No 93
>KOG0132|consensus
Probab=99.38 E-value=2.3e-12 Score=110.21 Aligned_cols=75 Identities=25% Similarity=0.558 Sum_probs=70.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
+||||||+|+.+++|.||.++|+.||+|..|.+ .++||||.+..-.+|.+|+..|++..+.++.|+|.|+..+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 689999999999999999999999999999998 489999999999999999999999999999999999986533
No 94
>KOG0108|consensus
Probab=99.37 E-value=1.6e-12 Score=107.73 Aligned_cols=74 Identities=32% Similarity=0.608 Sum_probs=69.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
+.|||||||+.+++++|..+|+..|.|..+++ .+||||++|.++++|..|++.|||..+.|+.|.|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999998 3899999999999999999999999999999999999865
Q ss_pred Cc
Q psy10320 76 DR 77 (262)
Q Consensus 76 ~~ 77 (262)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=6.2e-12 Score=94.88 Aligned_cols=73 Identities=19% Similarity=0.267 Sum_probs=66.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc--CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK--RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~--~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..+|||+||++.+++++|+++|+.||+|..+.+.. ...++|||+|.+++++..|+ .|+|..|.+..|.|....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 56999999999999999999999999999999883 45689999999999999999 599999999999997654
No 96
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=8.2e-12 Score=78.57 Aligned_cols=68 Identities=34% Similarity=0.548 Sum_probs=62.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecccC---CCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR---HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
+|+|.|||..+++++|.++|.+||.+..+.+... ..++|||+|.+.++|..|+..++|..+.|..+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 4899999999999999999999999998887743 3799999999999999999999999999998876
No 97
>KOG4211|consensus
Probab=99.34 E-value=2.5e-11 Score=99.19 Aligned_cols=178 Identities=22% Similarity=0.331 Sum_probs=117.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeE-EEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRD-VIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.+|-+.+||+.+|++||.+||+..-.|.. |.+ +.|-|||+|++.+.|+.|+ .-|...|..+.|.|..+...
T Consensus 104 ~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al-~rhre~iGhRYIEvF~Ss~~ 182 (510)
T KOG4211|consen 104 GVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL-GRHRENIGHRYIEVFRSSRA 182 (510)
T ss_pred ceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH-HHHHHhhccceEEeehhHHH
Confidence 57999999999999999999998754444 333 3689999999999999999 66778889999998776532
Q ss_pred CcccccCC---------------CCCCCCCCCCCCCCCC-----------------------------CC--C-------
Q psy10320 76 DRSQERGR---------------RGYGSYRAPPPRRGWG-----------------------------HD--R------- 102 (262)
Q Consensus 76 ~~~~~~~~---------------~~~~~~~~~~~~~~~~-----------------------------~~--~------- 102 (262)
........ .+.+......+...+. .. .
T Consensus 183 e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~~ 262 (510)
T KOG4211|consen 183 EVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPVS 262 (510)
T ss_pred HHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCCC
Confidence 21111100 0000000000000000 00 0
Q ss_pred --C------CCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceE-EEec--ccCCCceEEEEecCHHHHHHHHHHhC
Q psy10320 103 --D------DRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVC-YADA--HKRHRNEGVVEFESSSDMKKALDKLD 171 (262)
Q Consensus 103 --~------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~-~~~~--~~~~~~~~~v~f~~~~~a~~a~~~l~ 171 (262)
+ .....-......++..+||+..++.+|..+|...-.+. .+.+ .+...+.|+|+|++.++|..|+. -+
T Consensus 263 ~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams-kd 341 (510)
T KOG4211|consen 263 SGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG-KD 341 (510)
T ss_pred CCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhhHhhhc-cC
Confidence 0 00000011125788899999999999999999876552 2222 26778999999999999999995 57
Q ss_pred CcccCCceEEEe
Q psy10320 172 NAELNGRRIRLI 183 (262)
Q Consensus 172 g~~~~g~~~~v~ 183 (262)
+..+..+-+.+-
T Consensus 342 ~anm~hrYVElF 353 (510)
T KOG4211|consen 342 GANMGHRYVELF 353 (510)
T ss_pred CcccCcceeeec
Confidence 778887777653
No 98
>KOG4660|consensus
Probab=99.34 E-value=1.7e-12 Score=107.43 Aligned_cols=172 Identities=22% Similarity=0.223 Sum_probs=112.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe---eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL---KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
|...+|+|-|||..|++++|.++|+.||+|..|.. ..|.+||+|-|+.+|+.|+.+|++..|.|+.|......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~---- 148 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGA---- 148 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcc----
Confidence 45679999999999999999999999999999887 48999999999999999999999999999998811111
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC-CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEE
Q psy10320 78 SQERGRRGYGSYRAPPPRRGWGHDRD-DRYGPPTRS-DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVV 155 (262)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v 155 (262)
........ + ..+|..-.. ....++..- ...++ +.|++..+..-++.+++-+|.+.. ...+.....-|+
T Consensus 149 ~~~~~~~~--~------~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~ 218 (549)
T KOG4660|consen 149 RRAMGLQS--G------TSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RETPLLNHQRFV 218 (549)
T ss_pred cccchhcc--c------chhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-ccccchhhhhhh
Confidence 11100000 0 111111000 000111000 11222 228888888778888888887766 444433346788
Q ss_pred EecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 156 EFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 156 ~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
+|.+..++..++..+ |..+.+....+....+
T Consensus 219 ~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 219 EFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 888888886665533 5555666555555544
No 99
>KOG0111|consensus
Probab=99.31 E-value=2.3e-12 Score=94.48 Aligned_cols=77 Identities=31% Similarity=0.464 Sum_probs=72.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||++|..++++.-|...|-.||.|..+.+. .+.++++||+|...++|.+||+-||+.++.|+.|+|++++|
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP 89 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKP 89 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCC
Confidence 5699999999999999999999999999999886 56899999999999999999999999999999999999988
Q ss_pred CC
Q psy10320 188 RG 189 (262)
Q Consensus 188 ~~ 189 (262)
..
T Consensus 90 ~k 91 (298)
T KOG0111|consen 90 EK 91 (298)
T ss_pred cc
Confidence 64
No 100
>KOG0415|consensus
Probab=99.30 E-value=3.5e-12 Score=99.87 Aligned_cols=75 Identities=17% Similarity=0.411 Sum_probs=70.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||..|+|-+|.++|.-+|+.||+|..|.+. -.||||+|++.++|++|.-.|++..|+++.|.|.++..
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 4789999999999999999999999999999984 46999999999999999999999999999999999987
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
..+
T Consensus 319 Vsk 321 (479)
T KOG0415|consen 319 VSK 321 (479)
T ss_pred hhh
Confidence 655
No 101
>KOG2193|consensus
Probab=99.30 E-value=8e-13 Score=105.70 Aligned_cols=150 Identities=23% Similarity=0.395 Sum_probs=126.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc--CCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCc-ccCCceEEEEEccCCCccc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKG--YGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK-SLLGERVTVEIAKGIDRSQ 79 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~--~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~-~~~g~~l~v~~~~~~~~~~ 79 (262)
+++||++||.+.++..+|..+|.. .|--..+.+..|||||.+.+...|.+|++.++|. .+.|+.+.|..+.++...
T Consensus 1 mnklyignL~p~~~psdl~svfg~ak~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr- 79 (584)
T KOG2193|consen 1 MNKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR- 79 (584)
T ss_pred CCcccccccCCCCChHHHHHHhccccCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH-
Confidence 468999999999999999999974 4555667788999999999999999999999996 889999999988765333
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCC--CceEEEEe
Q psy10320 80 ERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRH--RNEGVVEF 157 (262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~~~~v~f 157 (262)
...+.|.|+|....++.+..++.+||.+..+...... .....|.|
T Consensus 80 ---------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty 126 (584)
T KOG2193|consen 80 ---------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTY 126 (584)
T ss_pred ---------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHH
Confidence 3357899999999999999999999999888665322 23445788
Q ss_pred cCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 158 ESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 158 ~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
...+.++.||.+|+|..+.+..+.+.+-.
T Consensus 127 ~~~~~~~~ai~kl~g~Q~en~~~k~~YiP 155 (584)
T KOG2193|consen 127 SAQQQHRQAIHKLNGPQLENQHLKVGYIP 155 (584)
T ss_pred HHHHHHHHHHHhhcchHhhhhhhhcccCc
Confidence 99999999999999999999888886543
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.28 E-value=2.6e-11 Score=72.47 Aligned_cols=56 Identities=30% Similarity=0.496 Sum_probs=50.9
Q ss_pred HHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 130 LKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 130 l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
|.++|++||.|..+.+.....++|||+|.+.++|..|+..|||..++|+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 57899999999999998766799999999999999999999999999999999764
No 103
>KOG4454|consensus
Probab=99.28 E-value=9e-13 Score=96.53 Aligned_cols=139 Identities=22% Similarity=0.259 Sum_probs=108.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
..||||+||...++|+-|.++|-.-|+|..|.|. ..||||.|+++-.+.-|++.|||..+.+..|.|.+-....
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~s 88 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNS 88 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCCC
Confidence 4699999999999999999999999999999994 2499999999999999999999999999999887554211
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCce
Q psy10320 77 RSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNE 152 (262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~ 152 (262)
.. -|...++++.+.+.|...|++..+.+. +.+..+
T Consensus 89 ha-----------------------------------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~ 127 (267)
T KOG4454|consen 89 HA-----------------------------------------PLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNF 127 (267)
T ss_pred cc-----------------------------------------hhhhhcchhhheeeecccCCCCCccccccccCCccCc
Confidence 10 134556667777778888877766554 446778
Q ss_pred EEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 153 GVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 153 ~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
+|+.+......-.++....+....-+++.+
T Consensus 128 ~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 128 GFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred cchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 888887777777777777776655554443
No 104
>KOG0131|consensus
Probab=99.25 E-value=2.3e-11 Score=86.79 Aligned_cols=76 Identities=30% Similarity=0.424 Sum_probs=70.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+||+..++++.|.++|-+.|+|..+++. ....||||++|.++++|.-|+..|+...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 346799999999999999999999999999999886 447899999999999999999999999999999999887
Q ss_pred C
Q psy10320 186 K 186 (262)
Q Consensus 186 ~ 186 (262)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 105
>smart00361 RRM_1 RNA recognition motif.
Probab=99.23 E-value=4.1e-11 Score=75.06 Aligned_cols=53 Identities=28% Similarity=0.529 Sum_probs=47.7
Q ss_pred HHHHHHHHh----cCCceeEEE-e----------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 17 ERDLEKFVK----GYGRIRDVI-L----------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 17 ~~~l~~~F~----~~G~v~~v~-i----------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
+++|+++|. .||.|..|. + ++|+|||+|.+.++|..|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999998 999999884 2 2789999999999999999999999999999876
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.23 E-value=1.1e-10 Score=73.74 Aligned_cols=69 Identities=33% Similarity=0.532 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCC----CceEEEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRH----RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
+|+|.|||..+++++|.++|+.+|.|..+.+.... .++|||+|.+.++|..|+..+++..+.|..+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 47899999999999999999999999998887443 7899999999999999999999999999998875
No 107
>KOG0146|consensus
Probab=99.22 E-value=1.4e-11 Score=93.06 Aligned_cols=74 Identities=26% Similarity=0.467 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+|+|||-.||.+.++.||.+.|-.||.|...++ +|.|+||.|.++.+|+.||..|||..|+=++|+|++..+
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 799999999999999999999999999988776 489999999999999999999999999999999998776
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
+.
T Consensus 365 kd 366 (371)
T KOG0146|consen 365 KD 366 (371)
T ss_pred cc
Confidence 53
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=9.5e-11 Score=73.36 Aligned_cols=65 Identities=31% Similarity=0.544 Sum_probs=58.8
Q ss_pred EcCCCCCCCHHHHHHHhhcCCceEEEecccC-----CCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 118 VENLSSRVSWQDLKDFMRQVGEVCYADAHKR-----HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 118 v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
|+|||..+++++|.++|+.||.|..+.+... ..++|||+|.+.++|..|+..+++..+.|..+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5789999999999999999999998887643 3689999999999999999999999999998876
No 109
>KOG0149|consensus
Probab=99.19 E-value=5.3e-11 Score=88.51 Aligned_cols=74 Identities=20% Similarity=0.297 Sum_probs=63.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
-..|||+||++++..++|+.+|++||+|..+.++ +.++||+||.|.+.+.|..|++- -.-.|+|++..++.+--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 3589999999999999999999999999988776 67899999999999999999963 34567888877766543
No 110
>KOG0153|consensus
Probab=99.18 E-value=7.3e-11 Score=92.40 Aligned_cols=72 Identities=29% Similarity=0.478 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHH-hcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYE-LNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~-l~~~~~~g~~l~v~~~~~ 74 (262)
-+||||+||...++|.+|++.|.+||+|..|.+. +++|||+|.+-+.|+.|.+. ++...|+|.+|.|.|..+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 4799999999999999999999999999999984 78999999999999998866 555688999999999987
No 111
>KOG0112|consensus
Probab=99.18 E-value=2.7e-11 Score=105.41 Aligned_cols=150 Identities=18% Similarity=0.309 Sum_probs=126.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
+.|||++||+..+++.+|+..|..+|.|..|.|. .-||||.|.+...+-.|...+.+..|..-.+.+.+...
T Consensus 372 trTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~- 450 (975)
T KOG0112|consen 372 TRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP- 450 (975)
T ss_pred hhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc-
Confidence 4699999999999999999999999999999984 35999999999999999989998877655555554432
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEE
Q psy10320 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVV 155 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v 155 (262)
.......+++++|+.-+....+..+|..||.|..|++-.. .-|+||
T Consensus 451 ---------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-q~yayi 496 (975)
T KOG0112|consen 451 ---------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-QPYAYI 496 (975)
T ss_pred ---------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-Ccceee
Confidence 1222457999999999999999999999999999887643 469999
Q ss_pred EecCHHHHHHHHHHhCCcccCC--ceEEEeecCC
Q psy10320 156 EFESSSDMKKALDKLDNAELNG--RRIRLIEDKP 187 (262)
Q Consensus 156 ~f~~~~~a~~a~~~l~g~~~~g--~~~~v~~~~~ 187 (262)
.|.+...++.|+..|-|..+++ +.+.|.++.+
T Consensus 497 ~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 497 QYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred ecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 9999999999999999999987 5577766654
No 112
>KOG0415|consensus
Probab=99.16 E-value=3.8e-11 Score=94.17 Aligned_cols=76 Identities=21% Similarity=0.307 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.+.+.|||.-|.+-+++++|..+|+.||.|..+.++ +....||||+|++.+++++|.-+|++.-|+++.|+|.+.
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 446799999999999999999999999999999887 556789999999999999999999999999999999654
Q ss_pred C
Q psy10320 186 K 186 (262)
Q Consensus 186 ~ 186 (262)
.
T Consensus 317 Q 317 (479)
T KOG0415|consen 317 Q 317 (479)
T ss_pred h
Confidence 3
No 113
>KOG0126|consensus
Probab=99.14 E-value=4.5e-12 Score=90.29 Aligned_cols=73 Identities=18% Similarity=0.249 Sum_probs=67.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
..-|||+|||+++|+.||--+|++||+|..|.++ +.++||||+.|++.....-|+.-|||..+.|+.|+|...
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4489999999999999999999999999999887 678999999999999999999999999999999998543
No 114
>KOG0108|consensus
Probab=99.09 E-value=3.4e-10 Score=94.10 Aligned_cols=76 Identities=25% Similarity=0.355 Sum_probs=70.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+.+||+|+|+++++++|.++|+..|.|..+.+. +..+||+|++|.+.++|..|++.|||.++.|+.|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 689999999999999999999999999998876 677999999999999999999999999999999999887654
Q ss_pred C
Q psy10320 189 G 189 (262)
Q Consensus 189 ~ 189 (262)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 115
>KOG4208|consensus
Probab=99.09 E-value=3.8e-10 Score=82.37 Aligned_cols=73 Identities=23% Similarity=0.408 Sum_probs=66.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC-CceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGY-GRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.+.+||..+|..+-+.+|..+|..| |.|..+.+ ++|||||+|++++.|.-|-+.||+..|.++.|.|.+..
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 4678999999999999999999988 78888888 38999999999999999999999999999999998876
Q ss_pred CC
Q psy10320 74 GI 75 (262)
Q Consensus 74 ~~ 75 (262)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 54
No 116
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.08 E-value=7.2e-10 Score=89.05 Aligned_cols=75 Identities=32% Similarity=0.542 Sum_probs=69.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||..+++++|.++|..||.|..+.+. +..+|+|||+|.+.++|..|+..++|..+.|+.|.|.....
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5799999999999999999999999999777665 56789999999999999999999999999999999998654
No 117
>KOG4206|consensus
Probab=99.06 E-value=9.1e-10 Score=81.73 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=70.9
Q ss_pred CceEEEcCCCCCCCHHHHHH----HhhcCCceEEEecc--cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSSRVSWQDLKD----FMRQVGEVCYADAH--KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~----~f~~~g~i~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..+|||.||+..+..++|.. +|++||.|..|... ...+|.|||.|.+.+.|..|+..|+|..+.|+.+++.++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~ 88 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAK 88 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheeccc
Confidence 44999999999999999887 99999999998876 4568999999999999999999999999999999999988
Q ss_pred CCCC
Q psy10320 187 PRGG 190 (262)
Q Consensus 187 ~~~~ 190 (262)
....
T Consensus 89 s~sd 92 (221)
T KOG4206|consen 89 SDSD 92 (221)
T ss_pred Cccc
Confidence 6653
No 118
>KOG0128|consensus
Probab=99.06 E-value=1.7e-11 Score=106.11 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=111.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
+++||.||++.+.+.+|...|..+|.+..+.+ .+|+|||+|..++++.+||.....+.+. +
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g-K---------- 736 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG-K---------- 736 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-h----------
Confidence 57899999999999999999999987666554 3899999999999999999555554443 1
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCc
Q psy10320 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRN 151 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~ 151 (262)
..++|.|+|+..|.++++.++..+|.+..+.++ +.++|
T Consensus 737 --------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg 778 (881)
T KOG0128|consen 737 --------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKG 778 (881)
T ss_pred --------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccccc
Confidence 168899999999999999999999998887654 67899
Q ss_pred eEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 152 EGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 152 ~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
.++|.|.+..++..++..+++..+....+.|..
T Consensus 779 ~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 779 KARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred ceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 999999999999999988887777766666554
No 119
>KOG0533|consensus
Probab=99.04 E-value=9.6e-10 Score=84.19 Aligned_cols=75 Identities=35% Similarity=0.558 Sum_probs=68.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
++|+|.|||+.|+++||+++|..||.++.+.+. .|.|-|.|...++|..||+.++|..++|..|.+.......
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 789999999999999999999999988888883 6999999999999999999999999999999998877654
Q ss_pred cc
Q psy10320 77 RS 78 (262)
Q Consensus 77 ~~ 78 (262)
..
T Consensus 164 ~~ 165 (243)
T KOG0533|consen 164 QS 165 (243)
T ss_pred cc
Confidence 43
No 120
>KOG4210|consensus
Probab=99.02 E-value=5.9e-10 Score=88.48 Aligned_cols=166 Identities=20% Similarity=0.266 Sum_probs=124.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.+++|++++..++.+.++..+|..+|.+....+ ++++++|.|+..+.+..|++........+..+...+...
T Consensus 88 ~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~ 167 (285)
T KOG4210|consen 88 SSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTR 167 (285)
T ss_pred cccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccc
Confidence 478999999999999999999999997766655 389999999999999999944433455555554444332
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE-EcCCCCCCCHHHHHHHhhcCCceEEEecc-----cC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLI-VENLSSRVSWQDLKDFMRQVGEVCYADAH-----KR 148 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~ 148 (262)
......... ......+..+++ |.+++..++.++|...|..+|.|..+.+. +.
T Consensus 168 ~~~~~~n~~----------------------~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~ 225 (285)
T KOG4210|consen 168 RGLRPKNKL----------------------SRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGD 225 (285)
T ss_pred ccccccchh----------------------cccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccc
Confidence 221000000 000111123455 99999999999999999999999988876 45
Q ss_pred CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCCC
Q psy10320 149 HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGGG 191 (262)
Q Consensus 149 ~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~~ 191 (262)
..+++||+|.+...+..++.. ....+.+..+.+.+..+....
T Consensus 226 ~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPKS 267 (285)
T ss_pred hhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCccc
Confidence 688999999999999999976 788899999999988776544
No 121
>KOG0116|consensus
Probab=99.01 E-value=2.2e-09 Score=88.77 Aligned_cols=73 Identities=27% Similarity=0.467 Sum_probs=63.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+++++++|+++|..||+|+...|. .+||||+|.+.++++.|| ..+-..++++.|.|+.-..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i-~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAI-EASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhh-hcCccccCCeeEEEEeccc
Confidence 4569999999999999999999999999887762 289999999999999999 5558899999999987765
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=99.01 E-value=1.5e-09 Score=67.93 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=48.0
Q ss_pred HHHHHHHhh----cCCceEEEe-c-c------cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 127 WQDLKDFMR----QVGEVCYAD-A-H------KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 127 ~~~l~~~f~----~~g~i~~~~-~-~------~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
+++|.++|. .||.|..+. + . +..+|++||+|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 467778887 999998874 2 2 345899999999999999999999999999999875
No 123
>KOG0106|consensus
Probab=99.00 E-value=2.5e-09 Score=80.10 Aligned_cols=71 Identities=30% Similarity=0.485 Sum_probs=65.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.+||++||+.+.+.+|+.+|..||.+..+.+. .+++||+|.+..+|..|+..|++..|.|-.+.|.+++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 68999999999999999999999999999884 588899999999999999999999999998888887753
No 124
>KOG4661|consensus
Probab=98.98 E-value=1.1e-09 Score=91.20 Aligned_cols=73 Identities=26% Similarity=0.496 Sum_probs=67.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+.+|||.+|...+-..+|+.||++||+|+..++. +.|+||.+.+.++|.++|+.|+...++|+.|.|+.++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 5689999999999999999999999999888772 68999999999999999999999999999999998875
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 485 E 485 (940)
T KOG4661|consen 485 E 485 (940)
T ss_pred C
Confidence 4
No 125
>KOG0151|consensus
Probab=98.96 E-value=2.7e-09 Score=91.03 Aligned_cols=74 Identities=27% Similarity=0.421 Sum_probs=69.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEE
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVE 70 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 70 (262)
+.|+|||+||++.++++.|...|..||+|..|+|+ ..|+||.|-+-.+|+.|+..|+|..+.+..+.+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 46899999999999999999999999999999994 6799999999999999999999999999999999
Q ss_pred EccCC
Q psy10320 71 IAKGI 75 (262)
Q Consensus 71 ~~~~~ 75 (262)
|++..
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 99654
No 126
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.96 E-value=6.4e-09 Score=68.25 Aligned_cols=71 Identities=23% Similarity=0.271 Sum_probs=59.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC--CceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccC----CceEEE
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGY--GRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLL----GERVTV 69 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~----g~~l~v 69 (262)
|||.|+|||...|.++|.+++... |...-+.++ .|||||-|.+++.|......++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 899999999999999999999753 555555552 799999999999999999999999775 466777
Q ss_pred EEccC
Q psy10320 70 EIAKG 74 (262)
Q Consensus 70 ~~~~~ 74 (262)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77764
No 127
>KOG4307|consensus
Probab=98.89 E-value=2.2e-08 Score=85.43 Aligned_cols=72 Identities=17% Similarity=0.056 Sum_probs=60.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeE-EEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRD-VILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+..|||..||..+++.++.++|...-.|++ |.|. .+.|||+|.+++++..|...-+...++.+.|.|.....
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 568999999999999999999998877877 6663 68999999999999999866666777778888876653
No 128
>KOG4307|consensus
Probab=98.88 E-value=1.2e-08 Score=87.02 Aligned_cols=178 Identities=14% Similarity=0.011 Sum_probs=121.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC-CceeEEEe-----e-CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGY-GRIRDVIL-----K-NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~-G~v~~v~i-----~-~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
+.+-+.+++.++.+.+++++|... -.-.++.+ . .|.++|+|..+.++++|+ .-|...+-.+.+.|.......
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~-~rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGRNAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAF-TRNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred heeeecccccccccchhhhhcCcccccccchhhhhcCCCcCCceEEEecCcchHHHHH-hcCchhhhhcceeecCCCccc
Confidence 456677899999999999999754 22233332 2 799999999999999998 667778888888887776554
Q ss_pred cccccCCCCCCC-----CCCCCCCCCCCCC--CCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEE-Eecc--
Q psy10320 77 RSQERGRRGYGS-----YRAPPPRRGWGHD--RDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCY-ADAH-- 146 (262)
Q Consensus 77 ~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~-- 146 (262)
............ ...+++....... ..+...-|......|||..||..+++.++.++|.....|++ |.+.
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~ 470 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL 470 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC
Confidence 433322211111 0001111100000 00112234455779999999999999999999998887776 5554
Q ss_pred --cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 147 --KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 147 --~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
....+.|||+|.+++++..|...-+.+.++.+.|+|
T Consensus 471 P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 471 PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 345779999999998888888766666677777877
No 129
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.87 E-value=1.4e-08 Score=63.31 Aligned_cols=70 Identities=17% Similarity=0.422 Sum_probs=49.9
Q ss_pred ceEEEcCCCCCCCHHHH----HHHHhcCC-ceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 4 TKVYIGGLPYGVRERDL----EKFVKGYG-RIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l----~~~F~~~G-~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
+.|||.|||.+.....| ++++..|| .|..| ..+.|+|.|.+++.|..|...|+|..+.|..|.|.+....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 57999999999888775 55667886 67666 6899999999999999999999999999999999988543
No 130
>KOG4205|consensus
Probab=98.80 E-value=8e-09 Score=82.41 Aligned_cols=74 Identities=30% Similarity=0.604 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
+|||++||.++++++|+++|++||.|.++.+ .++|+||.|.+++.+++++ .+.-..|.|+.+.|..+.++.
T Consensus 99 kiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~pk~ 177 (311)
T KOG4205|consen 99 KIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIPKE 177 (311)
T ss_pred EEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccchh
Confidence 8999999999999999999999999888877 3899999999999999998 777789999999999998775
Q ss_pred ccc
Q psy10320 77 RSQ 79 (262)
Q Consensus 77 ~~~ 79 (262)
...
T Consensus 178 ~~~ 180 (311)
T KOG4205|consen 178 VMQ 180 (311)
T ss_pred hcc
Confidence 544
No 131
>KOG0132|consensus
Probab=98.75 E-value=3.1e-08 Score=85.57 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=71.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGGG 191 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~~ 191 (262)
..||||++|+..+++.||..+|+.||.|..|.++. ++++|||.+....+|.+|+.+|....+.++.|+|.++...+-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 46899999999999999999999999999999886 5799999999999999999999999999999999888765543
No 132
>KOG1365|consensus
Probab=98.71 E-value=5e-07 Score=72.20 Aligned_cols=162 Identities=20% Similarity=0.248 Sum_probs=109.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC----ceeEEEe----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG----RIRDVIL----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G----~v~~v~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.+.|-..+||+..++.+|..||+..- -+.-|.. ..|.|.|.|.++|.-+.|+ .-+...+.++.|.|..+..
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlal-kRhkhh~g~ryievYka~g 138 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLAL-KRHKHHMGTRYIEVYKATG 138 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhh-HhhhhhccCCceeeeccCc
Confidence 35677889999999999999998652 2222222 3689999999999999999 6677788889999876654
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcC-----C--ceEEEec-c
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQV-----G--EVCYADA-H 146 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-----g--~i~~~~~-~ 146 (262)
...-.-. ++.+.. ...-++......|.+.+||+++++.++.++|..- | .|..+.. .
T Consensus 139 e~f~~ia-----gg~s~e-----------~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd 202 (508)
T KOG1365|consen 139 EEFLKIA-----GGTSNE-----------AAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD 202 (508)
T ss_pred hhheEec-----CCcccc-----------CCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC
Confidence 3222110 000000 0000111112367789999999999999999632 2 3344444 3
Q ss_pred cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 147 KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 147 ~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
+...|.|||.|+.+++|+.||. -|...++.+.|.+
T Consensus 203 grpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 203 GRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred CCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHH
Confidence 6789999999999999999996 3555555555543
No 133
>KOG4209|consensus
Probab=98.66 E-value=3e-08 Score=76.29 Aligned_cols=72 Identities=25% Similarity=0.510 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.+.|||+|+.+.+|.+++...|+.||.|..+.| .+|||||+|.+.+.++.|+. |++..|.|..+.|.+...
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 478999999999999999999999999987776 37899999999999999995 999999999999988875
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 180 ~ 180 (231)
T KOG4209|consen 180 N 180 (231)
T ss_pred e
Confidence 4
No 134
>KOG0153|consensus
Probab=98.64 E-value=1.7e-07 Score=73.95 Aligned_cols=76 Identities=26% Similarity=0.368 Sum_probs=65.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHh-CCcccCCceEEEeecCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKL-DNAELNGRRIRLIEDKP 187 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l-~g~~~~g~~~~v~~~~~ 187 (262)
..-.+|||++|...+++.+|.+.|.+||+|..+.+... .+.|||+|.+...|+.|.+.+ +...++|.+|.|..+.+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 34469999999999999999999999999999988753 469999999999999877665 45567999999998887
No 135
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.64 E-value=1.1e-07 Score=63.95 Aligned_cols=70 Identities=24% Similarity=0.414 Sum_probs=45.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCc--EEEEEeCChhhHHHHHHHhcCc-----ccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG--FGFVEFEDYRDADDAVYELNGK-----SLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g--~afV~f~~~~~a~~a~~~l~~~-----~~~g~~l~v~~~ 72 (262)
++.|+|.|++..++-++|+++|+.||.|..|.+.+| .|||-|.+++.|+.|++.+... .+.+..+.+...
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 578999999999999999999999999999999865 7999999999999999776543 556666665543
No 136
>KOG0116|consensus
Probab=98.63 E-value=4.5e-07 Score=75.33 Aligned_cols=77 Identities=23% Similarity=0.445 Sum_probs=65.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
..|||.|||.+++..+|+++|..||.|....|. +....||||+|.+..+++.||.+ +-..++++++.|++.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 469999999999999999999999999876654 22238999999999999999975 477899999999988775
Q ss_pred CCC
Q psy10320 189 GGG 191 (262)
Q Consensus 189 ~~~ 191 (262)
..+
T Consensus 368 ~~g 370 (419)
T KOG0116|consen 368 FRG 370 (419)
T ss_pred ccc
Confidence 443
No 137
>KOG4661|consensus
Probab=98.62 E-value=1e-07 Score=79.83 Aligned_cols=74 Identities=31% Similarity=0.428 Sum_probs=67.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
...|+|.+|...+...+|+.+|++||+|+-..++ ...+.|+||++.+..+|.+||..||..+|.|+.|.|..++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 3579999999999999999999999999988776 3357799999999999999999999999999999997665
No 138
>KOG0533|consensus
Probab=98.62 E-value=1.7e-07 Score=71.95 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=65.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
...|+|.|||+.+.++||+++|..||.+..+.+. +...|.|-|.|...++|..|++.++|..++|..+.+....+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 3689999999999999999999999977766554 56778999999999999999999999999999988755443
No 139
>KOG4208|consensus
Probab=98.60 E-value=2.6e-07 Score=67.82 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=65.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcC-CceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQV-GEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~-g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
.....+++..+|..+.+.++..+|.+| |.+..+.+. |+++|||||+|++.+.|.-|-+.||+.-|.++.|.+..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 334578999999999999999999988 666666663 78899999999999999999999999999999887654
Q ss_pred cCC
Q psy10320 185 DKP 187 (262)
Q Consensus 185 ~~~ 187 (262)
-.|
T Consensus 127 mpp 129 (214)
T KOG4208|consen 127 MPP 129 (214)
T ss_pred eCc
Confidence 443
No 140
>KOG1457|consensus
Probab=98.60 E-value=1.3e-06 Score=64.85 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc--cC----CCceEEEEecCHHHHHHHHHHhCCcccC---CceEE
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH--KR----HRNEGVVEFESSSDMKKALDKLDNAELN---GRRIR 181 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~----~~~~~~v~f~~~~~a~~a~~~l~g~~~~---g~~~~ 181 (262)
....+|||.+||.++...+|..+|..|-..+...+. .+ ++-+||+.|.+...|.+|+.+|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 346799999999999999999999998755544443 22 2468999999999999999999999886 67889
Q ss_pred EeecCCCCCC
Q psy10320 182 LIEDKPRGGG 191 (262)
Q Consensus 182 v~~~~~~~~~ 191 (262)
++.++.....
T Consensus 112 iElAKSNtK~ 121 (284)
T KOG1457|consen 112 IELAKSNTKR 121 (284)
T ss_pred eeehhcCccc
Confidence 9888765433
No 141
>KOG4660|consensus
Probab=98.58 E-value=8.6e-08 Score=80.06 Aligned_cols=71 Identities=30% Similarity=0.386 Sum_probs=66.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEE
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 181 (262)
.+..+|+|-|||..+++++|..+|+.||+|..+.......+.+||+|-|..+|+.|+++|++.++.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34568999999999999999999999999999888888899999999999999999999999999999887
No 142
>KOG0226|consensus
Probab=98.49 E-value=1.9e-07 Score=70.56 Aligned_cols=139 Identities=16% Similarity=0.193 Sum_probs=95.4
Q ss_pred HHHHhcCCceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccccCCCCCCCCCCCC
Q psy10320 21 EKFVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPP 93 (262)
Q Consensus 21 ~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
...|+.+-.+....+ ..+++|+.|.....-.++-..-++..+.-..|.+.-....+..
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP--------------- 181 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP--------------- 181 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCc---------------
Confidence 455655544333333 2689999998876666666555555555555443322211110
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEec-----ccCCCceEEEEecCHHHHHHHHH
Q psy10320 94 PRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA-----HKRHRNEGVVEFESSSDMKKALD 168 (262)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~-----~~~~~~~~~v~f~~~~~a~~a~~ 168 (262)
....-......||-+.|..+++++-|...|.+|-......+ .++.+||+||.|.+..++..|+.
T Consensus 182 -----------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmr 250 (290)
T KOG0226|consen 182 -----------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMR 250 (290)
T ss_pred -----------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHH
Confidence 01111222458999999999999999999999875544444 47789999999999999999999
Q ss_pred HhCCcccCCceEEEeec
Q psy10320 169 KLDNAELNGRRIRLIED 185 (262)
Q Consensus 169 ~l~g~~~~g~~~~v~~~ 185 (262)
.|+|..++.+.|.+...
T Consensus 251 em~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 251 EMNGKYVGSRPIKLRKS 267 (290)
T ss_pred hhcccccccchhHhhhh
Confidence 99999999999876443
No 143
>KOG4676|consensus
Probab=98.47 E-value=1.8e-08 Score=80.36 Aligned_cols=60 Identities=8% Similarity=0.001 Sum_probs=52.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee----CcEEEEEeCChhhHHHHHHHhcCcccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK----NGFGFVEFEDYRDADDAVYELNGKSLL 63 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~a~~a~~~l~~~~~~ 63 (262)
+.||+|++|+..+-..++.++|..+|+|....+. ..+|.|+|........|+ .++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~hal-r~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHAL-RSHGRERK 214 (479)
T ss_pred HhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHH-Hhcchhhh
Confidence 4689999999999999999999999999887773 568889999999999999 67776665
No 144
>KOG4454|consensus
Probab=98.39 E-value=2e-07 Score=68.94 Aligned_cols=70 Identities=21% Similarity=0.226 Sum_probs=62.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc---CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK---RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
..+|||+|+...++++.|.++|-+.|+|..+.|.. ....+|||.|.++....-|+..+||..+.+..+.+
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhc
Confidence 56999999999999999999999999999998872 22349999999999999999999999998887765
No 145
>KOG2202|consensus
Probab=98.36 E-value=1.1e-07 Score=72.00 Aligned_cols=61 Identities=25% Similarity=0.365 Sum_probs=52.2
Q ss_pred HHHHHHHh-cCCceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcc
Q psy10320 18 RDLEKFVK-GYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 18 ~~l~~~F~-~~G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 78 (262)
++|...|+ +||+|+.+.| ..|.+||.|..+++|++|++.||+.+|.|++|..+++......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~r 151 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFR 151 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchh
Confidence 45555556 8999999987 3799999999999999999999999999999999988765443
No 146
>KOG1548|consensus
Probab=98.35 E-value=2.6e-06 Score=67.35 Aligned_cols=77 Identities=16% Similarity=0.321 Sum_probs=66.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEE--------Eecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCce
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCY--------ADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRR 179 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~ 179 (262)
.+..|||.|||.++|.+++.++|..+|.|.. |.++ +..+|-|.+.|-..+++.-|+..|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 3457999999999999999999999997643 3333 556889999999999999999999999999999
Q ss_pred EEEeecCCC
Q psy10320 180 IRLIEDKPR 188 (262)
Q Consensus 180 ~~v~~~~~~ 188 (262)
|+|..++-.
T Consensus 213 ~rVerAkfq 221 (382)
T KOG1548|consen 213 LRVERAKFQ 221 (382)
T ss_pred EEEehhhhh
Confidence 999877644
No 147
>KOG0151|consensus
Probab=98.33 E-value=2.5e-06 Score=73.47 Aligned_cols=74 Identities=26% Similarity=0.300 Sum_probs=66.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc--------cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH--------KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--------~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
...|||+||++.++++.|...|..||+|..+.++ .....++||.|-+..+|+.|++.|+|..+.+..+++.+
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gW 253 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGW 253 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecc
Confidence 5589999999999999999999999999999886 23467899999999999999999999999999888866
Q ss_pred cC
Q psy10320 185 DK 186 (262)
Q Consensus 185 ~~ 186 (262)
++
T Consensus 254 gk 255 (877)
T KOG0151|consen 254 GK 255 (877)
T ss_pred cc
Confidence 63
No 148
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.32 E-value=1.5e-06 Score=50.62 Aligned_cols=51 Identities=22% Similarity=0.514 Sum_probs=44.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHH
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAV 54 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~ 54 (262)
.++|-|.|.++...+..| ..|..||+|..+.+. ...+||.|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 368999999988776554 588889999999997 789999999999999985
No 149
>KOG2416|consensus
Probab=98.25 E-value=2.4e-06 Score=72.13 Aligned_cols=77 Identities=9% Similarity=0.144 Sum_probs=67.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHh-cCCceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCccc---CCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVK-GYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSL---LGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~l~v~~~~~~ 75 (262)
+++.|||.||--..|.-+|++++. ..|.|.+.+| .+..|||.|.+.++|...+++|||..| +++.|.+.|....
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 357899999999999999999999 5778888877 589999999999999999999999977 6789999998765
Q ss_pred Ccc
Q psy10320 76 DRS 78 (262)
Q Consensus 76 ~~~ 78 (262)
...
T Consensus 523 eld 525 (718)
T KOG2416|consen 523 ELD 525 (718)
T ss_pred HHH
Confidence 444
No 150
>KOG0226|consensus
Probab=98.21 E-value=1.5e-06 Score=65.76 Aligned_cols=70 Identities=24% Similarity=0.435 Sum_probs=60.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
-+||.|.|...++++.|-..|.+|-.-...++ ++||+||.|.++.++..|+.+|+|..++.+.|.+..+.
T Consensus 191 fRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 191 FRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 47999999999999999999999864433333 48999999999999999999999999999988876443
No 151
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.19 E-value=4.1e-06 Score=66.03 Aligned_cols=71 Identities=20% Similarity=0.497 Sum_probs=61.0
Q ss_pred eEEEcCCCCCCCHHHH------HHHHhcCCceeEEEeeC---------cEE--EEEeCChhhHHHHHHHhcCcccCCceE
Q psy10320 5 KVYIGGLPYGVRERDL------EKFVKGYGRIRDVILKN---------GFG--FVEFEDYRDADDAVYELNGKSLLGERV 67 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l------~~~F~~~G~v~~v~i~~---------g~a--fV~f~~~~~a~~a~~~l~~~~~~g~~l 67 (262)
-|||-+||+.+..+++ .++|..||.|..|.+.+ +.+ ||.|.+.|+|..||.+.+|..++|+-|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4799999998888883 56899999999999942 223 999999999999999999999999999
Q ss_pred EEEEccCC
Q psy10320 68 TVEIAKGI 75 (262)
Q Consensus 68 ~v~~~~~~ 75 (262)
+..+...+
T Consensus 196 katYGTTK 203 (480)
T COG5175 196 KATYGTTK 203 (480)
T ss_pred eeecCchH
Confidence 99887643
No 152
>KOG4209|consensus
Probab=98.18 E-value=5.5e-06 Score=63.88 Aligned_cols=75 Identities=19% Similarity=0.247 Sum_probs=66.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
...+||+|+.+.++.++++..|+.||.|..+.+. +..++++||+|.+.+.+..|+. |+|..+.|..+.|...+.
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 4489999999999999999999999998766554 4578999999999999999998 999999999999877665
Q ss_pred C
Q psy10320 188 R 188 (262)
Q Consensus 188 ~ 188 (262)
.
T Consensus 180 ~ 180 (231)
T KOG4209|consen 180 N 180 (231)
T ss_pred e
Confidence 4
No 153
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.17 E-value=2.2e-05 Score=51.72 Aligned_cols=75 Identities=9% Similarity=0.151 Sum_probs=58.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcC--CceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccC----CceEEE
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQV--GEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELN----GRRIRL 182 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~----g~~~~v 182 (262)
.+|.|.|+|...+.++|.+++... |....+.+. ..+.|||||.|.+++.|..-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 489999999999999999888753 333333333 456899999999999999999999999886 345666
Q ss_pred eecCCC
Q psy10320 183 IEDKPR 188 (262)
Q Consensus 183 ~~~~~~ 188 (262)
.+|+-+
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 666543
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.10 E-value=5.6e-06 Score=51.88 Aligned_cols=69 Identities=16% Similarity=0.280 Sum_probs=47.5
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhhcCC-ceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 114 HRLIVENLSSRVSWQD----LKDFMRQVG-EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..|+|.|||.+..... |++++..+| .|..+. .+-|+|.|.+++.|..|.+.|+|..+.|..|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 3799999999988766 556666776 666552 47899999999999999999999999999999988743
No 155
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.07 E-value=1.5e-05 Score=53.69 Aligned_cols=68 Identities=34% Similarity=0.563 Sum_probs=43.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCc-----ccCCceEEE
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA-----ELNGRRIRL 182 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~-----~~~g~~~~v 182 (262)
+.|+|.+++..++.++|.+.|+.||.|.+|++... ...|||.|.+++.|+.|+..+.-. .+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT--SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 47899999999999999999999999999998753 358999999999999999877433 444544443
No 156
>KOG3152|consensus
Probab=98.05 E-value=2.8e-06 Score=64.44 Aligned_cols=63 Identities=27% Similarity=0.420 Sum_probs=57.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------------------C--cEEEEEeCChhhHHHHHHHhcCcccC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------------------N--GFGFVEFEDYRDADDAVYELNGKSLL 63 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------------------~--g~afV~f~~~~~a~~a~~~l~~~~~~ 63 (262)
..||+.+||+.+...-|+++|+.||.|-.|.+. . .-++|+|.+...|..+.+.|||..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 579999999999999999999999999999982 1 13789999999999999999999999
Q ss_pred Cce
Q psy10320 64 GER 66 (262)
Q Consensus 64 g~~ 66 (262)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 875
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.98 E-value=3.8e-05 Score=50.91 Aligned_cols=70 Identities=19% Similarity=0.302 Sum_probs=53.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEE-------------e--eCcEEEEEeCChhhHHHHHHHhcCcccCCc-e
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVI-------------L--KNGFGFVEFEDYRDADDAVYELNGKSLLGE-R 66 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~-------------i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~ 66 (262)
.+.|.|-+.|+. ....|.+.|+.||+|.+.. + ......|.|.++.+|++|| ..||..|.|. .
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 467899999988 6668889999999998875 2 2578899999999999999 8899999886 4
Q ss_pred EEEEEccC
Q psy10320 67 VTVEIAKG 74 (262)
Q Consensus 67 l~v~~~~~ 74 (262)
+-|.++++
T Consensus 84 vGV~~~~~ 91 (100)
T PF05172_consen 84 VGVKPCDP 91 (100)
T ss_dssp EEEEE-HH
T ss_pred EEEEEcHH
Confidence 55777743
No 158
>KOG0128|consensus
Probab=97.93 E-value=6.7e-07 Score=78.40 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=115.5
Q ss_pred ccceEEEcCCCCCCCHH-HHHHHHhcCCceeEEEeeC--------cEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 2 VGTKVYIGGLPYGVRER-DLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~-~l~~~F~~~G~v~~v~i~~--------g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
++...++.|+.+..... .+...|..+|.|+.|.+.+ .++++++....+++.|. ...+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCC
Confidence 34456778887766666 5677889999999999953 27889999999999888 77777888888887777
Q ss_pred cCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----c
Q psy10320 73 KGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----K 147 (262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~ 147 (262)
.+.......... .......+++||.||+..+.+.+|...|..+|.+..+.+. +
T Consensus 649 d~~~~~~~~kvs----------------------~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~ 706 (881)
T KOG0128|consen 649 DAEEKEENFKVS----------------------PNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEK 706 (881)
T ss_pred CchhhhhccCcC----------------------chHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhcc
Confidence 654422110000 0000123589999999999999999999999987766554 5
Q ss_pred CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 148 RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 148 ~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
+-+|+||++|..++++.+|+....+..++...+-+
T Consensus 707 ~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 707 RFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred ccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 66899999999999999999866665555444433
No 159
>KOG1995|consensus
Probab=97.93 E-value=8.1e-06 Score=65.07 Aligned_cols=73 Identities=26% Similarity=0.402 Sum_probs=63.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceE
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRD--------VIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERV 67 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 67 (262)
.||||-+||..+++++|.++|..+|.|.. |+| .|+-|.|.|.++..|+.|+.-+++..|.+..|
T Consensus 67 ~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~i 146 (351)
T KOG1995|consen 67 ETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTI 146 (351)
T ss_pred ccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCc
Confidence 58999999999999999999999998743 222 38999999999999999999999999999999
Q ss_pred EEEEccCCC
Q psy10320 68 TVEIAKGID 76 (262)
Q Consensus 68 ~v~~~~~~~ 76 (262)
+|.++....
T Consensus 147 kvs~a~~r~ 155 (351)
T KOG1995|consen 147 KVSLAERRT 155 (351)
T ss_pred hhhhhhhcc
Confidence 988776543
No 160
>KOG1855|consensus
Probab=97.86 E-value=1.3e-05 Score=65.23 Aligned_cols=60 Identities=22% Similarity=0.307 Sum_probs=53.3
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---------------------CcEEEEEeCChhhHHHHHHHhcC
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---------------------NGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---------------------~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
|.+.||.+.|||.+-..+.|.+||..||.|+.|.|- +-+|||+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 356799999999999999999999999999999981 35899999999999999988865
Q ss_pred c
Q psy10320 60 K 60 (262)
Q Consensus 60 ~ 60 (262)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 161
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.85 E-value=0.00011 Score=51.80 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=48.1
Q ss_pred HHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 19 DLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 19 ~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
+|.+.|..||+|.=|++..+.-+|.|.+-+.|.+|+ .|+|..+.|+.|.|.+-.+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCCeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccH
Confidence 677889999999989998999999999999999999 999999999999999877653
No 162
>KOG0112|consensus
Probab=97.83 E-value=8.8e-05 Score=65.94 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=70.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCC--ceEEEEEccCCCc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLG--ERVTVEIAKGIDR 77 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~~ 77 (262)
+.|.++|++|.+++....|...|..||.|..|.+- .-||||.|++...|+.|++.|-|..|++ +.|.|.++.....
T Consensus 454 ~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 454 PTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred cceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 46889999999999999999999999999999985 4599999999999999999999999976 6788888886654
Q ss_pred cccc
Q psy10320 78 SQER 81 (262)
Q Consensus 78 ~~~~ 81 (262)
....
T Consensus 534 ~Pqq 537 (975)
T KOG0112|consen 534 TPQQ 537 (975)
T ss_pred Chhh
Confidence 4433
No 163
>KOG4210|consensus
Probab=97.68 E-value=4.7e-05 Score=60.81 Aligned_cols=73 Identities=23% Similarity=0.444 Sum_probs=64.6
Q ss_pred eEE-EcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 5 KVY-IGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 5 ~l~-V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
++| |+||+.++++++|...|..+|.|..+.+. +|+|||.|.....+..++.. +...+.+..+.+....+.
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 555 99999999999999999999999999983 79999999999999999966 788999999999988765
Q ss_pred Ccc
Q psy10320 76 DRS 78 (262)
Q Consensus 76 ~~~ 78 (262)
...
T Consensus 265 ~~~ 267 (285)
T KOG4210|consen 265 PKS 267 (285)
T ss_pred ccc
Confidence 443
No 164
>KOG4849|consensus
Probab=97.66 E-value=4e-05 Score=60.86 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=58.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCc--eeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGR--IRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~--v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
-+|||||.+.+|++||.+.+...|. +.++++ ++|||+|...+...+++.|+.|....|+|+.-.|-...
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 5899999999999999999987773 455554 48999999999999999999999999999877665544
No 165
>KOG1996|consensus
Probab=97.65 E-value=0.00013 Score=56.65 Aligned_cols=57 Identities=32% Similarity=0.412 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCceeEEEee---------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 17 ERDLEKFVKGYGRIRDVILK---------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 17 ~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
++++.+.+++||.|..|.|. ---.||+|..+++|.+|+-.|||.+|+|+.+...|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45678889999999998883 2357999999999999999999999999998877654
No 166
>KOG2202|consensus
Probab=97.64 E-value=0.00028 Score=54.01 Aligned_cols=58 Identities=26% Similarity=0.305 Sum_probs=46.3
Q ss_pred HHHHHHhh-cCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 128 QDLKDFMR-QVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 128 ~~l~~~f~-~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
+++...|+ +||+|..+.+-. .-.|.+||.|...++|++|++.||+.++.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444555 899998876542 23678999999999999999999999999999977544
No 167
>KOG2314|consensus
Probab=97.64 E-value=8.1e-05 Score=62.86 Aligned_cols=71 Identities=34% Similarity=0.476 Sum_probs=55.5
Q ss_pred cceEEEcCCCCC--CCH----HHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccC-CceEE
Q psy10320 3 GTKVYIGGLPYG--VRE----RDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLL-GERVT 68 (262)
Q Consensus 3 ~~~l~V~nl~~~--~t~----~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~ 68 (262)
.+.|+|.|+|.- .-. ..|..+|+++|+|..+.++ +||+|++|++..+|+.|+..|||..|+ ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 367899999842 222 2356689999999998884 899999999999999999999998775 45666
Q ss_pred EEEcc
Q psy10320 69 VEIAK 73 (262)
Q Consensus 69 v~~~~ 73 (262)
|..-+
T Consensus 138 v~~f~ 142 (698)
T KOG2314|consen 138 VRLFK 142 (698)
T ss_pred eehhh
Confidence 65544
No 168
>KOG0115|consensus
Probab=97.62 E-value=0.00021 Score=54.52 Aligned_cols=85 Identities=28% Similarity=0.315 Sum_probs=72.1
Q ss_pred hhHHHHHHHhcCcccCCceEEEEEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCH
Q psy10320 48 RDADDAVYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSW 127 (262)
Q Consensus 48 ~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~ 127 (262)
.-|..|..+|++....|+.|.|.|+.. ..|+|.||...++.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~---------------------------------------a~l~V~nl~~~~sn 45 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH---------------------------------------AELYVVNLMQGASN 45 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc---------------------------------------ceEEEEecchhhhh
Confidence 346777778999999999999999863 38999999999999
Q ss_pred HHHHHHhhcCCceEEEe----cccCCCceEEEEecCHHHHHHHHHHhC
Q psy10320 128 QDLKDFMRQVGEVCYAD----AHKRHRNEGVVEFESSSDMKKALDKLD 171 (262)
Q Consensus 128 ~~l~~~f~~~g~i~~~~----~~~~~~~~~~v~f~~~~~a~~a~~~l~ 171 (262)
+.+.+.|..||+|.... ..+...+.++|+|+..-.+.+|+....
T Consensus 46 dll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 46 DLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred HHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 99999999999875443 336778899999999999999988763
No 169
>KOG0129|consensus
Probab=97.61 E-value=0.0002 Score=59.94 Aligned_cols=53 Identities=25% Similarity=0.431 Sum_probs=48.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHh-cCCceeEEEe--------eCcEEEEEeCChhhHHHHHHH
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVK-GYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~ 56 (262)
-|||||+||-.+|.++|..+|+ -||.|..+-| ++|-|=|.|.+..+-.+||+.
T Consensus 371 rTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 371 RTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 5999999999999999999999 7999988877 489999999999999999954
No 170
>KOG1995|consensus
Probab=97.60 E-value=0.00019 Score=57.47 Aligned_cols=77 Identities=18% Similarity=0.262 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEE--------ecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA--------DAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNG 177 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~--------~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g 177 (262)
....+|||.+||..+++.+|.++|.+++.|..- ++. ...++.|.|.|.++..|+.|+..++++.+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 335689999999999999999999999976321 221 4568899999999999999999999999999
Q ss_pred ceEEEeecCC
Q psy10320 178 RRIRLIEDKP 187 (262)
Q Consensus 178 ~~~~v~~~~~ 187 (262)
..|+|..+..
T Consensus 144 n~ikvs~a~~ 153 (351)
T KOG1995|consen 144 NTIKVSLAER 153 (351)
T ss_pred CCchhhhhhh
Confidence 9998866553
No 171
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.52 E-value=0.00081 Score=42.32 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=43.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~ 58 (262)
..||+ +|......||.++|..||.|.--.|...-|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWINDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEECTTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEcCCcEEEEeecHHHHHHHHHHhc
Confidence 45565 999999999999999999998888889999999999999999987765
No 172
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.51 E-value=0.00038 Score=40.49 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=41.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHH
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKAL 167 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~ 167 (262)
.|-|.|.+....+. +...|..||+|..+.+. ......+|.|.+..+|+.|+
T Consensus 3 wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~-~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEE-VLEHFASFGEIVDIYVP-ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHH-HHHHHHhcCCEEEEEcC-CCCcEEEEEECCHHHHHhhC
Confidence 57788888777754 55588889999998886 34678999999999999985
No 173
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=97.47 E-value=0.0013 Score=41.27 Aligned_cols=67 Identities=28% Similarity=0.471 Sum_probs=43.0
Q ss_pred ceEEEcCC--CCCCCHHHHHHHHhcCC-----ceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 4 TKVYIGGL--PYGVRERDLEKFVKGYG-----RIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 4 ~~l~V~nl--~~~~t~~~l~~~F~~~G-----~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
|++|| |+ -..++..+|..++...+ .|-.|.|...|+||+-.. +.|..++..|++..+.|+.|.|+.+
T Consensus 1 vrl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 1 VRLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp -EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CEEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 45566 33 34788999999998653 577899999999999987 5899999999999999999999864
No 174
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.45 E-value=0.00043 Score=54.94 Aligned_cols=74 Identities=14% Similarity=0.303 Sum_probs=60.4
Q ss_pred CceEEEcCCCCCCCHHH------HHHHhhcCCceEEEecccCC------Cc--eEEEEecCHHHHHHHHHHhCCcccCCc
Q psy10320 113 DHRLIVENLSSRVSWQD------LKDFMRQVGEVCYADAHKRH------RN--EGVVEFESSSDMKKALDKLDNAELNGR 178 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~------l~~~f~~~g~i~~~~~~~~~------~~--~~~v~f~~~~~a~~a~~~l~g~~~~g~ 178 (262)
.+.+||-+|++.+..++ -.++|.+||.|..+.+.... .+ -.||.|.+.++|..||.+.+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 45789999998887766 35899999999988776321 12 249999999999999999999999999
Q ss_pred eEEEeecC
Q psy10320 179 RIRLIEDK 186 (262)
Q Consensus 179 ~~~v~~~~ 186 (262)
.|+..+..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99886654
No 175
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.36 E-value=0.0015 Score=38.95 Aligned_cols=54 Identities=24% Similarity=0.324 Sum_probs=43.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC----CceeEEEeeCcEEEEEeCChhhHHHHHHHh
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGY----GRIRDVILKNGFGFVEFEDYRDADDAVYEL 57 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v~i~~g~afV~f~~~~~a~~a~~~l 57 (262)
..+|+|.|+. +++.++|+.+|..| ++..--.|--.-|=|.|.+.+.|.+||..|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCcEEEEECCHHHHHHHHHcC
Confidence 4689999985 68889999999998 544333445678999999999999999654
No 176
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.34 E-value=0.0014 Score=43.47 Aligned_cols=70 Identities=9% Similarity=0.069 Sum_probs=50.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEe------------cccCCCceEEEEecCHHHHHHHHHHhCCcccCCce-E
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYAD------------AHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRR-I 180 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~------------~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~-~ 180 (262)
.-|.|-+.|... ...|.+.|++||.|.... -......+..|.|+++.+|.+||. .||..+.|.. +
T Consensus 7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 467888888884 467889999999998775 223346788999999999999996 7999998854 4
Q ss_pred EEeec
Q psy10320 181 RLIED 185 (262)
Q Consensus 181 ~v~~~ 185 (262)
-|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 45544
No 177
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.33 E-value=0.0013 Score=45.76 Aligned_cols=70 Identities=17% Similarity=0.155 Sum_probs=54.3
Q ss_pred cceEEEcCCCC----CCCHHHHHHHHhcCCceeEEEee-CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPY----GVRERDLEKFVKGYGRIRDVILK-NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~----~~t~~~l~~~F~~~G~v~~v~i~-~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
|.||.|.=|.. .-+...|.+.++.||+|..|.+. +..|.|.|.+..+|-.|+.+++. ...|..+.+.|-.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq 160 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ 160 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence 56888865544 33444566677899999999985 78899999999999999987776 5667777777654
No 178
>KOG3152|consensus
Probab=97.30 E-value=0.00021 Score=54.49 Aligned_cols=66 Identities=24% Similarity=0.353 Sum_probs=56.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccC-------------CC----ceEEEEecCHHHHHHHHHHhCCcccC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR-------------HR----NEGVVEFESSSDMKKALDKLDNAELN 176 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-------------~~----~~~~v~f~~~~~a~~a~~~l~g~~~~ 176 (262)
-.||++++|+.+...-|+++|..||.|-.|.+... +. ..+.|+|.....|..+.+.||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 48999999999999999999999999998887521 11 24679999999999999999999999
Q ss_pred Cce
Q psy10320 177 GRR 179 (262)
Q Consensus 177 g~~ 179 (262)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 864
No 179
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=97.16 E-value=0.00037 Score=51.68 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=48.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc-CCce---eEEE--e--------eCcEEEEEeCChhhHHHHHHHhcCcccCCc---
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKG-YGRI---RDVI--L--------KNGFGFVEFEDYRDADDAVYELNGKSLLGE--- 65 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~-~G~v---~~v~--i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~--- 65 (262)
.++|.|++|||++|++++.+.+.. ++.. ..+. . .-.-|||.|.+.+++...+..++|..|.+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 579999999999999999997776 6654 3333 1 135799999999999999999999866432
Q ss_pred --eEEEEEcc
Q psy10320 66 --RVTVEIAK 73 (262)
Q Consensus 66 --~l~v~~~~ 73 (262)
...|+++-
T Consensus 87 ~~~~~VE~Ap 96 (176)
T PF03467_consen 87 EYPAVVEFAP 96 (176)
T ss_dssp EEEEEEEE-S
T ss_pred CcceeEEEcc
Confidence 34455554
No 180
>KOG2314|consensus
Probab=97.11 E-value=0.0014 Score=55.77 Aligned_cols=70 Identities=19% Similarity=0.220 Sum_probs=56.6
Q ss_pred CceEEEcCCCCCCCH------HHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCC-ceEE
Q psy10320 113 DHRLIVENLSSRVSW------QDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNG-RRIR 181 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~------~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g-~~~~ 181 (262)
...|+|.|+|.--.. .-|..+|+++|++....+. +..+|+.|++|++..+|+.|++.|||+.++- ....
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 458899999854332 3477899999999888776 5678999999999999999999999998864 3444
Q ss_pred E
Q psy10320 182 L 182 (262)
Q Consensus 182 v 182 (262)
|
T Consensus 138 v 138 (698)
T KOG2314|consen 138 V 138 (698)
T ss_pred e
Confidence 4
No 181
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.95 E-value=0.0059 Score=43.14 Aligned_cols=55 Identities=27% Similarity=0.382 Sum_probs=45.0
Q ss_pred HHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 129 DLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 129 ~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
+|-+.|..||.+.-+.+.+ +.-+|.|.+...|.+|+. ++|.+++|+.|.|....|
T Consensus 52 ~ll~~~~~~GevvLvRfv~---~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVG---DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEET---TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeC---CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 6778888999998887765 468999999999999996 999999999999876543
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.93 E-value=0.0088 Score=37.77 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=40.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhC
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLD 171 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~ 171 (262)
..+|+ +|.++...||.++|..||.|.-..+. -.-|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 45554 99999999999999999988766663 3679999999999999998775
No 183
>KOG2416|consensus
Probab=96.85 E-value=0.0018 Score=55.35 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=60.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcC-CceEEEecccCCCceEEEEecCHHHHHHHHHHhCCccc---CCceEEEeec
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQV-GEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL---NGRRIRLIED 185 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~---~g~~~~v~~~ 185 (262)
....+.|||.||-.-.|.-+|++++..- |.|... ++..-+..|||.|.+.++|.....+|||..+ +.+.|.+.|+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 4457899999999999999999999954 455555 4444567899999999999999999999876 3466766544
Q ss_pred C
Q psy10320 186 K 186 (262)
Q Consensus 186 ~ 186 (262)
.
T Consensus 520 ~ 520 (718)
T KOG2416|consen 520 R 520 (718)
T ss_pred c
Confidence 3
No 184
>KOG1855|consensus
Probab=96.75 E-value=0.0018 Score=53.14 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=53.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccC------------------CCceEEEEecCHHHHHHHHHHhCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR------------------HRNEGVVEFESSSDMKKALDKLDN 172 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------------------~~~~~~v~f~~~~~a~~a~~~l~g 172 (262)
.+..+|.+.|||.+-.-+.|.++|..+|.|..|.|..- .+..|+|+|++.+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 34679999999999999999999999999999987621 244689999999999999998864
Q ss_pred c
Q psy10320 173 A 173 (262)
Q Consensus 173 ~ 173 (262)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 185
>KOG1996|consensus
Probab=96.65 E-value=0.0053 Score=48.06 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=47.3
Q ss_pred HHHHHHHhhcCCceEEEecccCC------CceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 127 WQDLKDFMRQVGEVCYADAHKRH------RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 127 ~~~l~~~f~~~g~i~~~~~~~~~------~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
++++.+.+++||.|..|.|...+ .--.||+|...++|.+|+-.|||..|+|+.+...+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 35688999999999888776321 22469999999999999999999999999887543
No 186
>KOG0115|consensus
Probab=96.65 E-value=0.013 Score=45.16 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=55.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCc----ccCCceEEEEEc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGK----SLLGERVTVEIA 72 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~l~v~~~ 72 (262)
.-|||.||+..++-+.|.+.|..||+|....+ ..+-++|+|...-.|.+|+..+.-. +..+...-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 57999999999999999999999999876444 3678999999999999999887433 344555556554
Q ss_pred c
Q psy10320 73 K 73 (262)
Q Consensus 73 ~ 73 (262)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 4
No 187
>KOG2068|consensus
Probab=96.48 E-value=0.001 Score=53.06 Aligned_cols=71 Identities=20% Similarity=0.443 Sum_probs=57.6
Q ss_pred eEEEcCCCCCCCHHHHHH---HHhcCCceeEEEeeC-----------cEEEEEeCChhhHHHHHHHhcCcccCCceEEEE
Q psy10320 5 KVYIGGLPYGVRERDLEK---FVKGYGRIRDVILKN-----------GFGFVEFEDYRDADDAVYELNGKSLLGERVTVE 70 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~---~F~~~G~v~~v~i~~-----------g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 70 (262)
-+||-+|++.+..+.+.+ .|..||.|..|.+.+ .-+||.|...++|..||...+|..++|+.|+..
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 467788888777666654 788899999998842 248999999999999999999999999987776
Q ss_pred EccCC
Q psy10320 71 IAKGI 75 (262)
Q Consensus 71 ~~~~~ 75 (262)
+...+
T Consensus 159 ~gttk 163 (327)
T KOG2068|consen 159 LGTTK 163 (327)
T ss_pred hCCCc
Confidence 66544
No 188
>KOG2591|consensus
Probab=96.39 E-value=0.0076 Score=51.31 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=54.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhc--CCceeEEEe-eCcEEEEEeCChhhHHHHHHHhcC--cccCCceEE
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKG--YGRIRDVIL-KNGFGFVEFEDYRDADDAVYELNG--KSLLGERVT 68 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~--~G~v~~v~i-~~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~ 68 (262)
|.|+|.-||..+-+|+|+.||.. |-++.+|.+ ....=||.|++..||+.|...|.. ..|.|+.|.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDNWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 67899999999999999999974 778889888 366679999999999999877665 367777654
No 189
>KOG4285|consensus
Probab=96.36 E-value=0.018 Score=45.37 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=58.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCc-eEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGE-RVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~~~~~ 78 (262)
.+.|-|-++|+..+ .-|..+|+.||+|.+.... -.+-+|-|....+|++|| ..||+.|+|. .|-|..+.++...
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmiGVkpCtDksvi 273 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMIGVKPCTDKSVI 273 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhh-hhcCeeeccceEEeeeecCCHHHh
Confidence 35778888887654 3577889999999988874 457899999999999999 8899999886 4457777665433
No 190
>KOG0835|consensus
Probab=96.32 E-value=0.011 Score=47.07 Aligned_cols=12 Identities=0% Similarity=0.174 Sum_probs=6.6
Q ss_pred CCCHHHHHHHhh
Q psy10320 124 RVSWQDLKDFMR 135 (262)
Q Consensus 124 ~~~~~~l~~~f~ 135 (262)
.+++.+|.+++-
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 455666665543
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.26 E-value=0.016 Score=43.28 Aligned_cols=62 Identities=23% Similarity=0.163 Sum_probs=45.5
Q ss_pred CCHHHHHHHHhcCCceeEEEeeC--cEEEEEeCChhhHHHHHHHhc--CcccCCceEEEEEccCCC
Q psy10320 15 VRERDLEKFVKGYGRIRDVILKN--GFGFVEFEDYRDADDAVYELN--GKSLLGERVTVEIAKGID 76 (262)
Q Consensus 15 ~t~~~l~~~F~~~G~v~~v~i~~--g~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~~ 76 (262)
-..+.|+++|..|+.+..+..-+ +-..|.|.+.++|..|...|+ +..|.|..|.|.++....
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34578999999999888877754 458999999999999999999 899999999999986443
No 192
>KOG4849|consensus
Probab=96.13 E-value=0.0064 Score=48.75 Aligned_cols=70 Identities=14% Similarity=0.170 Sum_probs=58.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCc--eEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGE--VCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~--i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
...+||+||-+-+|++||.+.+...|- +..+++. ++.+|||.|........++.++.|-.+++.|..-.|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 458999999999999999999988873 3344433 678999999999999999999999999999876555
No 193
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.10 E-value=0.044 Score=37.14 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=43.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYG-RIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLG 64 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g 64 (262)
.+.+...|+.++.++|..+.+.+- .|..++|. +=.++++|.+.++|......+||..|.-
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444555666666766666664 46667773 2368999999999999999999987754
No 194
>KOG2253|consensus
Probab=95.96 E-value=0.0039 Score=54.09 Aligned_cols=68 Identities=18% Similarity=0.257 Sum_probs=62.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
-+|||+||...+..+-+..++..+|.|..+...+ |+|.+|..+..+..|+..++...++|+.+.+...
T Consensus 41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred ceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 5899999999999999999999999998887765 9999999999999999999999999998887654
No 195
>KOG2193|consensus
Probab=95.89 E-value=0.0077 Score=49.59 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=57.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCc-ccCCceEEEeecCCC
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA-ELNGRRIRLIEDKPR 188 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~-~~~g~~~~v~~~~~~ 188 (262)
.+|++||.+.++..+++.+|...-.-..-.++ -..||+||.+.+...|.+|++.++|+ ++.|..+.+...-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl-~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee-eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 68999999999999999999754211111111 14689999999999999999999987 688999988766654
No 196
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.81 E-value=0.07 Score=31.93 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=40.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcC----CceEEEecccCCCceEEEEecCHHHHHHHHHHh
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQV----GEVCYADAHKRHRNEGVVEFESSSDMKKALDKL 170 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~----g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l 170 (262)
..|+|.|+. +++.++|+.+|..| + ...+.++.+ .-|.|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdD--tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDD--TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecC--CcEEEEECCHHHHHHHHHcC
Confidence 479999986 47778999999988 4 334444433 45899999999999999764
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.75 E-value=0.082 Score=32.13 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 14 GVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 14 ~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
.++-++|+..+..|+ -..|...+.--||.|.+..+|+++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 688899999999996 4566665555699999999999999999999888877765
No 198
>KOG2591|consensus
Probab=95.66 E-value=0.043 Score=46.95 Aligned_cols=66 Identities=17% Similarity=0.301 Sum_probs=51.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc--CCceEEEecccCCCceEEEEecCHHHHHHHHHHhCC--cccCCceE
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQ--VGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDN--AELNGRRI 180 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g--~~~~g~~~ 180 (262)
.|.|.+..||..+..++++.+|.. +-+++.+.+..+ .-.||.|++..||+.|...|.. ++|.|+.|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--~nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--DNWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--CceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 568889999999999999999975 567777776532 4589999999999999977642 34555544
No 199
>KOG2135|consensus
Probab=95.53 E-value=0.009 Score=49.91 Aligned_cols=71 Identities=17% Similarity=0.258 Sum_probs=57.7
Q ss_pred eEEEcCCCCC-CCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 5 KVYIGGLPYG-VRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 5 ~l~V~nl~~~-~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.|-+.-+|+. -|-++|..-|..||+|..|.+. .-.|.|.|.+.-+|-.|. ..++..|+++.|+|.|.++..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 3344444443 3567889999999999999984 568999999999998888 788999999999999998643
No 200
>KOG0804|consensus
Probab=94.80 E-value=0.081 Score=44.23 Aligned_cols=62 Identities=27% Similarity=0.386 Sum_probs=53.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG-RIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLG 64 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g 64 (262)
++.|.|-.+|..+|..||..|...|- .|.+|.+. +=.++|.|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57899999999999999999998764 57788873 2358999999999999999999998864
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.75 E-value=0.49 Score=32.12 Aligned_cols=64 Identities=8% Similarity=0.026 Sum_probs=46.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCC-ceEEEecccCC---CceEEEEecCHHHHHHHHHHhCCcccCC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAHKRH---RNEGVVEFESSSDMKKALDKLDNAELNG 177 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~---~~~~~v~f~~~~~a~~a~~~l~g~~~~g 177 (262)
..+.+..+|..++.++|..+.+.+- .|..+.+.... +-.+.+.|.+..+|..-...+||+.++.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3455566666777777776666554 45566666433 3467899999999999999999998864
No 202
>KOG2135|consensus
Probab=94.26 E-value=0.08 Score=44.49 Aligned_cols=70 Identities=26% Similarity=0.331 Sum_probs=53.8
Q ss_pred EEEcCCCCCC-CHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 116 LIVENLSSRV-SWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 116 l~v~nl~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
|-+.-.|..+ +-.+|...|.+||.|..+.+--. ...|.|+|.+..+|-.|.. .++..|+++.|+|..-.+
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc-hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 3344444443 45789999999999998877532 5678999999999977774 799999999999866554
No 203
>KOG2253|consensus
Probab=93.85 E-value=0.18 Score=44.36 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=61.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
..+..++||+|+-..+..+-+..++..+|-|..+.... |+|++|..+.-+..|+..++-..++|..+.++.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34466999999999999999999999999888777653 999999999999999998988888888776543
No 204
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=93.85 E-value=0.063 Score=38.85 Aligned_cols=107 Identities=15% Similarity=0.058 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHhc----CCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccccCCCCCCCC
Q psy10320 14 GVRERDLEKFVKG----YGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSY 89 (262)
Q Consensus 14 ~~t~~~l~~~F~~----~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~ 89 (262)
.++...|.+.+.. .|.+.-..+..++..+.|.+++++..++ ......|.|..|.++...+.......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~~~fl~~F~~~~d~~~vl-~~~p~~~~~~~~~l~~W~~~~~~~~~-------- 98 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGDNLFLFQFESEEDRQRVL-KGGPWNFNGHFLILQRWSPDFNPSEV-------- 98 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCCCeEEEEEEeccceeEEE-ecccccccccchhhhhhccccccccc--------
Confidence 4566777776654 3556666667999999999999999998 44555777877777766532211100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCC-CCHHHHHHHhhcCCceEEEeccc
Q psy10320 90 RAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSR-VSWQDLKDFMRQVGEVCYADAHK 147 (262)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~ 147 (262)
.......=|.|.|||.. .+++-+..+.+.+|.+..++...
T Consensus 99 ------------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 99 ------------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ------------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 00011223667899987 56677889999999999998763
No 205
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.12 E-value=0.087 Score=39.18 Aligned_cols=65 Identities=9% Similarity=0.249 Sum_probs=44.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc-CCce---EEEe--cc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQ-VGEV---CYAD--AH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNG 177 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~-~g~i---~~~~--~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g 177 (262)
...|.|.+||+.++++++.+.+.. ++.. ..+. .. .....-|||.|.+.+++..-...++|..|.+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 458999999999999999987776 5544 2222 11 1123468999999999999999999976643
No 206
>KOG4285|consensus
Probab=92.96 E-value=0.45 Score=37.85 Aligned_cols=70 Identities=16% Similarity=0.180 Sum_probs=53.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCce-EEEeecCCC
Q psy10320 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRR-IRLIEDKPR 188 (262)
Q Consensus 116 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~-~~v~~~~~~ 188 (262)
|.|-++|.... ..|..+|++||.|...... .+..+-+|.|...-+|++||. .+|+.|+|.. |-|+.+..+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC-CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 45556665544 4678899999999877665 566789999999999999997 6899998865 456655433
No 207
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.95 E-value=0.18 Score=32.62 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=44.4
Q ss_pred EEEEeCChhhHHHHHHHhcC--cccCCceEEEEEccCC--CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy10320 40 GFVEFEDYRDADDAVYELNG--KSLLGERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115 (262)
Q Consensus 40 afV~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (262)
|+|.|.++.-|+..+ .+.. ..+++..+.|...... ........ ......+
T Consensus 1 AlITF~e~~VA~~i~-~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~-------------------------~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRIL-KKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVF-------------------------SGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHH-hCCEEEEEECCEEEEEEEEeEecCCceEEEEE-------------------------EcccCCE
Confidence 789999999999988 3333 3556666655544321 11111100 0112458
Q ss_pred EEEcCCCCCCCHHHHHHHhh
Q psy10320 116 LIVENLSSRVSWQDLKDFMR 135 (262)
Q Consensus 116 l~v~nl~~~~~~~~l~~~f~ 135 (262)
|.|.|+|..+.+++|++.++
T Consensus 55 Vlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEEeCCCCCCChhhheeeEE
Confidence 99999999999998888754
No 208
>KOG4574|consensus
Probab=92.91 E-value=0.072 Score=47.97 Aligned_cols=72 Identities=21% Similarity=0.289 Sum_probs=60.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeC--cEEEEEeCChhhHHHHHHHhcCccc--CCceEEEEEccCCC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--GFGFVEFEDYRDADDAVYELNGKSL--LGERVTVEIAKGID 76 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~--g~afV~f~~~~~a~~a~~~l~~~~~--~g~~l~v~~~~~~~ 76 (262)
+.++.|.+-+.|-.-|..+|..||.|.+++.-+ ..|.|+|...+.|..|+.+|+|..+ -|-+..|.+++...
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 445666777888999999999999999998854 5799999999999999999999744 67788888887543
No 209
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.63 E-value=0.46 Score=35.54 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=44.6
Q ss_pred CHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhC--CcccCCceEEEeecCCC
Q psy10320 126 SWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLD--NAELNGRRIRLIEDKPR 188 (262)
Q Consensus 126 ~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~--g~~~~g~~~~v~~~~~~ 188 (262)
....|+++|..++.+..+..+. +-+-..|.|.+.+.|..|...|+ +..+.|..+++.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcC-CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 4578999999999877766653 23557899999999999999999 89999999999887543
No 210
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.24 E-value=0.35 Score=34.04 Aligned_cols=64 Identities=16% Similarity=0.251 Sum_probs=46.8
Q ss_pred ceEEEc----CCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceE
Q psy10320 114 HRLIVE----NLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180 (262)
Q Consensus 114 ~~l~v~----nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~ 180 (262)
.+|.|. |+...-....+...++.||+|..+.+.| +.-|.|.|.+...|-.|+.+++. ...|..+
T Consensus 87 sTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 87 STIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred eeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 356664 4444444456777788999999999875 46799999999999999998775 3334433
No 211
>KOG2068|consensus
Probab=92.20 E-value=0.066 Score=43.08 Aligned_cols=74 Identities=15% Similarity=0.242 Sum_probs=55.9
Q ss_pred CceEEEcCCCCCCCHHHHH---HHhhcCCceEEEecccCC--------CceEEEEecCHHHHHHHHHHhCCcccCCceEE
Q psy10320 113 DHRLIVENLSSRVSWQDLK---DFMRQVGEVCYADAHKRH--------RNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~---~~f~~~g~i~~~~~~~~~--------~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 181 (262)
.+.+||-+|+..+.++.+. +.|.+||.|..+.+.... ..-++|.|...++|..||...+|..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 3568888888877666654 567788888887765322 22479999999999999999999999998865
Q ss_pred EeecC
Q psy10320 182 LIEDK 186 (262)
Q Consensus 182 v~~~~ 186 (262)
..++.
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 54433
No 212
>KOG2318|consensus
Probab=91.84 E-value=1 Score=39.22 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=56.9
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhcC----CceeEEEee----------------C------------------------
Q psy10320 3 GTKVYIGGLPY-GVRERDLEKFVKGY----GRIRDVILK----------------N------------------------ 37 (262)
Q Consensus 3 ~~~l~V~nl~~-~~t~~~l~~~F~~~----G~v~~v~i~----------------~------------------------ 37 (262)
+.+|-|-||.+ .+...+|.-+|..| |.|..|.|- .
T Consensus 174 T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~~ 253 (650)
T KOG2318|consen 174 TKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEEDV 253 (650)
T ss_pred cceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhhH
Confidence 45788999997 68999999999877 588888870 0
Q ss_pred ---------------cEEEEEeCChhhHHHHHHHhcCcccCCce--EEEEEcc
Q psy10320 38 ---------------GFGFVEFEDYRDADDAVYELNGKSLLGER--VTVEIAK 73 (262)
Q Consensus 38 ---------------g~afV~f~~~~~a~~a~~~l~~~~~~g~~--l~v~~~~ 73 (262)
=||.|+|.+++.|...++.|+|..|.... |.+.|..
T Consensus 254 ~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 254 DREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred HHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 17999999999999999999999887554 4444443
No 213
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.93 E-value=3.5 Score=25.63 Aligned_cols=60 Identities=17% Similarity=0.290 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHhhcCC-----ceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 122 SSRVSWQDLKDFMRQVG-----EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 122 ~~~~~~~~l~~~f~~~g-----~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
-..++..+|-.++...+ .|-.+.+. ..++||+.... .|..++..|++..+.|+.+.|+.+
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34567778888877654 45566664 46788887654 788889999999999999998764
No 214
>KOG4410|consensus
Probab=88.74 E-value=4.2 Score=32.27 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=36.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceE-EEecccCCCceEEEEecCH
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVC-YADAHKRHRNEGVVEFESS 160 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~~~~v~f~~~ 160 (262)
.-|+++||+.++...||+..+.+.+.+. .+.+ ..+.+-||++|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee-ecCCcceeEecCCc
Confidence 4699999999999999999999887543 3333 34678899999764
No 215
>KOG0804|consensus
Probab=87.27 E-value=1.9 Score=36.47 Aligned_cols=65 Identities=12% Similarity=0.232 Sum_probs=53.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCC-ceEEEecccC---CCceEEEEecCHHHHHHHHHHhCCcccCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAHKR---HRNEGVVEFESSSDMKKALDKLDNAELNG 177 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~---~~~~~~v~f~~~~~a~~a~~~l~g~~~~g 177 (262)
...|+|-.+|..++..||..|+..+- .|.++.++.+ ++-.+.|.|.+.++|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 56899999999999999999998665 4566766643 23457799999999999999999998875
No 216
>KOG2295|consensus
Probab=85.98 E-value=0.19 Score=43.26 Aligned_cols=63 Identities=17% Similarity=0.257 Sum_probs=52.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLG 64 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g 64 (262)
+.|+|+|.|++++++-.+|..++..+--+..+.+. ....+|.|.---....|+.+||+..+..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 35789999999999999999999998767777764 4578999998888888888888875543
No 217
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=85.22 E-value=6.2 Score=24.33 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=38.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCCh
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDY 47 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~ 47 (262)
|+..+|+|.|+.=.-=...+.+.+.....|..+.+ ..+.++|.|.+.
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~ 49 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSN 49 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCC
Confidence 78899999999777777889999998876777666 577899999983
No 218
>KOG4365|consensus
Probab=85.21 E-value=0.15 Score=42.57 Aligned_cols=74 Identities=5% Similarity=-0.107 Sum_probs=60.5
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
|.+++.++..||..++++++.-+|+.||.|.-+.++ .-.+||...+ .+|..+|..+-...++|..+.+.++
T Consensus 1 mgs~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 1 MGSMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred CcchhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 677889999999999999999999999999877774 3467777665 5778888888888888888887776
Q ss_pred cCC
Q psy10320 73 KGI 75 (262)
Q Consensus 73 ~~~ 75 (262)
...
T Consensus 80 ~~s 82 (572)
T KOG4365|consen 80 PSS 82 (572)
T ss_pred chh
Confidence 543
No 219
>KOG2891|consensus
Probab=84.74 E-value=0.53 Score=36.94 Aligned_cols=32 Identities=28% Similarity=0.521 Sum_probs=26.7
Q ss_pred ceEEEcCCCC------------CCCHHHHHHHHhcCCceeEEEe
Q psy10320 4 TKVYIGGLPY------------GVRERDLEKFVKGYGRIRDVIL 35 (262)
Q Consensus 4 ~~l~V~nl~~------------~~t~~~l~~~F~~~G~v~~v~i 35 (262)
-|||+.+||- --+++-|...|+.||.|..|.|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdi 193 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDI 193 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCC
Confidence 4888888874 2467889999999999988887
No 220
>KOG4574|consensus
Probab=84.32 E-value=0.82 Score=41.64 Aligned_cols=71 Identities=25% Similarity=0.257 Sum_probs=57.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCccc--CCceEEEeecCC
Q psy10320 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL--NGRRIRLIEDKP 187 (262)
Q Consensus 116 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~--~g~~~~v~~~~~ 187 (262)
.++.|.+-..+-..|..+|..||.|..++.+. .-..|.|+|...+.|..|+++|+|.++ .|.+.+|.+++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr-~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLR-DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecc-cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 34445566677778999999999999887753 246799999999999999999999875 577788877764
No 221
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=83.58 E-value=1.5 Score=30.10 Aligned_cols=51 Identities=20% Similarity=0.282 Sum_probs=27.0
Q ss_pred ceEEEcCCCCC---------CCHHHHHHHHhcCCceeEEEe-----eCcEEEEEeCChh-hHHHHH
Q psy10320 4 TKVYIGGLPYG---------VRERDLEKFVKGYGRIRDVIL-----KNGFGFVEFEDYR-DADDAV 54 (262)
Q Consensus 4 ~~l~V~nl~~~---------~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~-~a~~a~ 54 (262)
-+++|-|++.. ++.++|.+.|..|..++-..+ ..|++.|+|...- --..|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 36778888653 567889999999987654433 3689999999643 334455
No 222
>KOG1295|consensus
Probab=82.53 E-value=1.3 Score=36.54 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=46.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEe----------eCcEEEEEeCChhhHHHHHHHhcCccc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGR-IRDVIL----------KNGFGFVEFEDYRDADDAVYELNGKSL 62 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~v~i----------~~g~afV~f~~~~~a~~a~~~l~~~~~ 62 (262)
-+.|.|.+||+.+|+++|.+-...|-. |..... .-+.|||.|..+++.......++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 468899999999999999998877643 222222 146899999999999888888888754
No 223
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=82.20 E-value=24 Score=32.21 Aligned_cols=61 Identities=7% Similarity=0.129 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHhhcCCceE-----EEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 122 SSRVSWQDLKDFMRQVGEVC-----YADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 122 ~~~~~~~~l~~~f~~~g~i~-----~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
...++..+|-.++..-+.|. .+.+. ..+.||+... ..+...+..|++..+.|+.+.+..+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~---~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLF---ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEe---CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 45677777777776555443 33443 4577888754 44778888899999999999988764
No 224
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.44 E-value=9.7 Score=23.18 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 123 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
..++.++++..+..|+... +... +.--||.|.+..+|+++....+|..+.+..+.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~~---I~~d-~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWDR---IRDD-RTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcce---EEec-CCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4567789999999987432 2222 233589999999999999999999887776543
No 225
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=81.13 E-value=3.6 Score=24.53 Aligned_cols=18 Identities=17% Similarity=0.434 Sum_probs=15.6
Q ss_pred HHHHHHHhcCCceeEEEe
Q psy10320 18 RDLEKFVKGYGRIRDVIL 35 (262)
Q Consensus 18 ~~l~~~F~~~G~v~~v~i 35 (262)
.+|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999977766
No 226
>KOG4483|consensus
Probab=80.84 E-value=4.2 Score=33.93 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=43.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCce-eEEE-eeCcEEEEEeCChhhHHHHHHHh
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRI-RDVI-LKNGFGFVEFEDYRDADDAVYEL 57 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v-~~v~-i~~g~afV~f~~~~~a~~a~~~l 57 (262)
..|-|-|+|...-.+||...|+.|+.- -+|. |-...||..|.....|..|| .|
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdthalaVFss~~~AaeaL-t~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDTHALAVFSSVNRAAEAL-TL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecceeEEeecchHHHHHHh-hc
Confidence 578899999999999999999999742 2333 34789999999999999999 44
No 227
>KOG4246|consensus
Probab=78.57 E-value=1 Score=41.03 Aligned_cols=9 Identities=11% Similarity=0.191 Sum_probs=4.9
Q ss_pred ceEEEcCCC
Q psy10320 114 HRLIVENLS 122 (262)
Q Consensus 114 ~~l~v~nl~ 122 (262)
...|++++.
T Consensus 146 qR~f~gvvt 154 (1194)
T KOG4246|consen 146 QRRFAGVVT 154 (1194)
T ss_pred ceeeehhhh
Confidence 356666543
No 228
>KOG4019|consensus
Probab=75.72 E-value=4.4 Score=29.92 Aligned_cols=73 Identities=18% Similarity=0.159 Sum_probs=49.5
Q ss_pred cceEEEcCCCCCCC-HHH----HHHHHhcCCceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCc-eEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVR-ERD----LEKFVKGYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGE-RVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t-~~~----l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v~~~~~ 74 (262)
.+++++.+|+..+- ..+ ...+|..|-+..-..+ ..+..-|.|.+++.|..|.-.+++..|.|. .+...++..
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 35788888865332 222 2344554444333333 356677899999999999999999999888 788777765
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 90 ~ 90 (193)
T KOG4019|consen 90 G 90 (193)
T ss_pred C
Confidence 4
No 229
>KOG4410|consensus
Probab=73.37 E-value=8.1 Score=30.75 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=36.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCce-eEEEe--eCcEEEEEeCChhhH
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRI-RDVIL--KNGFGFVEFEDYRDA 50 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v-~~v~i--~~g~afV~f~~~~~a 50 (262)
|-|||+||+-++--.||+..+.+.|-+ ..+.. ..|-||+.|.+...|
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRKGV 380 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCccCC
Confidence 679999999999999999999887632 23333 478899999885443
No 230
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=72.02 E-value=7 Score=31.28 Aligned_cols=161 Identities=12% Similarity=0.020 Sum_probs=91.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---------------CcEEEEEeCChhhHHHHH----HHhcC--cc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---------------NGFGFVEFEDYRDADDAV----YELNG--KS 61 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---------------~g~afV~f~~~~~a~~a~----~~l~~--~~ 61 (262)
...|.+.|+...++-..+..-|.+||+|+.|.+. .....+.|-+.+.|.... +.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3457788999999999999999999999999994 246889999999888754 33333 24
Q ss_pred cCCceEEEEEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCceEEEcCCCCCC-CHHHHHHHhh---c
Q psy10320 62 LLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR-YGPPTRSDHRLIVENLSSRV-SWQDLKDFMR---Q 136 (262)
Q Consensus 62 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~---~ 136 (262)
+.-..|.|.+..-............. ..+... ...-. .-...++...|.|.=- ..+ .++-+.+.+. .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~-----~~~~~~--~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~ 166 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEA-----DFSDYL--VASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKN 166 (309)
T ss_pred cCCcceeEEEEEEecccccccccccc-----chhhHH--hhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhcc
Confidence 55667777766532221110000000 000000 00000 0001122334555322 233 3333333322 2
Q ss_pred CC----ceEEEeccc-------CCCceEEEEecCHHHHHHHHHHhC
Q psy10320 137 VG----EVCYADAHK-------RHRNEGVVEFESSSDMKKALDKLD 171 (262)
Q Consensus 137 ~g----~i~~~~~~~-------~~~~~~~v~f~~~~~a~~a~~~l~ 171 (262)
-+ .++.++++. =+..||.+.|-+...|...++.+.
T Consensus 167 ~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 167 SNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 22 345666651 246799999999999999888775
No 231
>KOG4246|consensus
Probab=71.56 E-value=4.5 Score=37.15 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=6.2
Q ss_pred CCCCCCCHHHHHHH
Q psy10320 120 NLSSRVSWQDLKDF 133 (262)
Q Consensus 120 nl~~~~~~~~l~~~ 133 (262)
++|+.|+...|+.+
T Consensus 194 smpfkwnaqriq~l 207 (1194)
T KOG4246|consen 194 SMPFKWNAQRIQHL 207 (1194)
T ss_pred CCCccccHHHHHhc
Confidence 34444444444433
No 232
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=71.54 E-value=24 Score=22.70 Aligned_cols=52 Identities=12% Similarity=0.181 Sum_probs=38.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-ceeEEEe---eC--cEEEEEeCChhhHHHHHHH
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKG-YG-RIRDVIL---KN--GFGFVEFEDYRDADDAVYE 56 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~i---~~--g~afV~f~~~~~a~~a~~~ 56 (262)
.-|+--++..++..+|++.++. || .|..|.. +. .-|||.+....+|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 3455567889999999999996 66 4666655 23 4699999999888876533
No 233
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=70.14 E-value=35 Score=23.91 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=52.3
Q ss_pred ceEEEcCCCCC---CCHHHHHHHHhcCC-ceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 4 TKVYIGGLPYG---VRERDLEKFVKGYG-RIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 4 ~~l~V~nl~~~---~t~~~l~~~F~~~G-~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
..|.|.+.... .+-..|.+.++.-| .++.+....+...|.|.+.++-..|.+.|....=++..|.+..+.
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 45677665333 56778888888877 578888889999999999999988888877665555556555443
No 234
>KOG4019|consensus
Probab=68.06 E-value=9.6 Score=28.24 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=51.4
Q ss_pred eEEEcCCCCCCCH-----HHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCc-eEEEeecCCC
Q psy10320 115 RLIVENLSSRVSW-----QDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGR-RIRLIEDKPR 188 (262)
Q Consensus 115 ~l~v~nl~~~~~~-----~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~-~~~v~~~~~~ 188 (262)
.+.+.+++..+.. .....+|.+|.+.....++. ..+...|.|.++..|..|...+++..|.|. .+..-++.+.
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~ 90 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPG 90 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCC
Confidence 5666677655432 34556666666555444442 345567899999999999999999999988 7777776654
No 235
>PF14893 PNMA: PNMA
Probab=66.50 E-value=8.3 Score=31.86 Aligned_cols=43 Identities=16% Similarity=0.331 Sum_probs=30.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CCceeEEEe---------eCcEEEEEeCCh
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKG-YGRIRDVIL---------KNGFGFVEFEDY 47 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v~i---------~~g~afV~f~~~ 47 (262)
.|.|.+||.++++++|.+.+.. +-+.-.+.+ ....|+|+|...
T Consensus 20 ~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 20 ALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 5789999999999999998753 222222232 245788888853
No 236
>KOG4008|consensus
Probab=64.76 E-value=4.2 Score=31.34 Aligned_cols=42 Identities=21% Similarity=0.540 Sum_probs=32.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFE 45 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~ 45 (262)
-+||+-|||..+|++.|..+...+|-+..+....-.+|++-.
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~~e~gl~es~ 82 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYNDEFGLHESD 82 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhheecccchhhhhCC
Confidence 379999999999999999999999976665555444444433
No 237
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=63.12 E-value=3.9 Score=26.47 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHh
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVK 25 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~ 25 (262)
...||-|.|||..+.+++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 356899999999999999998765
No 238
>KOG2891|consensus
Probab=62.38 E-value=1.2 Score=35.15 Aligned_cols=120 Identities=18% Similarity=0.273 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHhcC-Cc--eeEEEee-CcEEEEEeCCh----hhHHHHHHHhcCcccC--C--ceEEEEEccCCCcccc
Q psy10320 13 YGVRERDLEKFVKGY-GR--IRDVILK-NGFGFVEFEDY----RDADDAVYELNGKSLL--G--ERVTVEIAKGIDRSQE 80 (262)
Q Consensus 13 ~~~t~~~l~~~F~~~-G~--v~~v~i~-~g~afV~f~~~----~~a~~a~~~l~~~~~~--g--~~l~v~~~~~~~~~~~ 80 (262)
.+++.-+|.+-+... .+ ...|+|. ...-||.|+-. .-++..+..|+|..+. | -.|.|..+..+..-
T Consensus 47 ksisnwdlmerlk~aid~~q~dsckiresnid~iifeael~n~gimkk~l~~ldgfsiklsgfad~lkvka~eakidf-- 124 (445)
T KOG2891|consen 47 KSISNWDLMERLKGAIDNHQFDSCKIRESNIDFIIFEAELENKGIMKKFLACLDGFSIKLSGFADILKVKAAEAKIDF-- 124 (445)
T ss_pred cccchHHHHHHHHhhcccccccceeecccccceEEeeHhhhhhhHHHHHHHHhcCCeeeecccchHHhhhHHhhcCCC--
Confidence 367777777776532 22 3456664 56788988753 3445566666765432 2 22333222211100
Q ss_pred cCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCceEEEcCCCCC------------CCHHHHHHHhhcCCceEEEe
Q psy10320 81 RGRRGYGSYRAPPPRRGWG----HDRDDRYGPPTRSDHRLIVENLSSR------------VSWQDLKDFMRQVGEVCYAD 144 (262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~v~nl~~~------------~~~~~l~~~f~~~g~i~~~~ 144 (262)
|... .|. .........|.....+|++.++|-. .+++-|...|+.||.|..|+
T Consensus 125 -----------psrh-dwdd~fm~~kdmdemkpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vd 192 (445)
T KOG2891|consen 125 -----------PSRH-DWDDFFMDAKDMDEMKPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVD 192 (445)
T ss_pred -----------Cccc-chHHHHhhhhhhhccCCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecC
Confidence 0000 000 0000111112222346777666633 45677999999999999888
Q ss_pred cc
Q psy10320 145 AH 146 (262)
Q Consensus 145 ~~ 146 (262)
|.
T Consensus 193 ip 194 (445)
T KOG2891|consen 193 IP 194 (445)
T ss_pred Cc
Confidence 75
No 239
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=61.28 E-value=7.6 Score=20.34 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHhcCCc
Q psy10320 13 YGVRERDLEKFVKGYGR 29 (262)
Q Consensus 13 ~~~t~~~l~~~F~~~G~ 29 (262)
..+++++|+++|...+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 47899999999988653
No 240
>KOG3580|consensus
Probab=59.54 E-value=40 Score=30.22 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=21.2
Q ss_pred CceEEEcCCCCC-CCHHHHHHHhhcCCceEEEecc
Q psy10320 113 DHRLIVENLSSR-VSWQDLKDFMRQVGEVCYADAH 146 (262)
Q Consensus 113 ~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~ 146 (262)
...+.|-+++.+ +...-.-+.+.+.|++..+.+.
T Consensus 61 DrvvMVNGvsMenv~haFAvQqLrksgK~A~Itvk 95 (1027)
T KOG3580|consen 61 DRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVK 95 (1027)
T ss_pred CeEEEEcCcchhhhHHHHHHHHHHhhccceeEEec
Confidence 446777766643 4444445566778888777665
No 241
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=58.86 E-value=72 Score=29.23 Aligned_cols=61 Identities=13% Similarity=0.226 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHhcCC-----ceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 12 PYGVRERDLEKFVKGYG-----RIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 12 ~~~~t~~~l~~~F~~~G-----~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
-..++..+|..++..-+ .|-.|.|...|.||+... +.|...+..|++..+.|+.|.|+.+.
T Consensus 496 ~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (629)
T PRK11634 496 DDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLG 561 (629)
T ss_pred ccCCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcCh-hhHHHHHHHhccccccCCceEEEECC
Confidence 35788888888887654 356678889999999987 57888999999999999999999875
No 242
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=56.20 E-value=22 Score=22.71 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=22.9
Q ss_pred ceeEEEee---CcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 29 RIRDVILK---NGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 29 ~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
.|..+... +||-|||=.++.++..|+..+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 45565553 899999999999999999776653
No 243
>KOG2318|consensus
Probab=56.07 E-value=83 Score=28.11 Aligned_cols=70 Identities=21% Similarity=0.208 Sum_probs=53.6
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhcC----CceEEEeccc--------------CC----------------------
Q psy10320 111 RSDHRLIVENLSSR-VSWQDLKDFMRQV----GEVCYADAHK--------------RH---------------------- 149 (262)
Q Consensus 111 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~----g~i~~~~~~~--------------~~---------------------- 149 (262)
...+.|-|.||.+. +...+|.-+|..| |.|..|.|+. .+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 34668999999974 7788899888865 4777777640 01
Q ss_pred ----------------CceEEEEecCHHHHHHHHHHhCCcccCCceE
Q psy10320 150 ----------------RNEGVVEFESSSDMKKALDKLDNAELNGRRI 180 (262)
Q Consensus 150 ----------------~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~ 180 (262)
.-||.|+|++...|.......+|.+|.....
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~ 298 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSAN 298 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccc
Confidence 1268899999999999999999999876543
No 244
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=55.53 E-value=39 Score=19.60 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=35.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHH
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDAD 51 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~ 51 (262)
.+++|.+.....+.++|.+++..+|--..-.+....-+|.+.+.....
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~ 49 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPK 49 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCch
Confidence 578888887789999999999999864333444566677777665544
No 245
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=54.81 E-value=38 Score=20.94 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=29.4
Q ss_pred HHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCccc
Q psy10320 23 FVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSL 62 (262)
Q Consensus 23 ~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~ 62 (262)
-+.+||.|..+--...|+.+ |-+.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk~kYvvl-Yvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKKMKYVVL-YVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECCccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 46789999887766777755 5677899999888876543
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=52.85 E-value=29 Score=28.55 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=17.2
Q ss_pred EEEEeCChhhHHHHHHHhcC
Q psy10320 40 GFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 40 afV~f~~~~~a~~a~~~l~~ 59 (262)
|||.|.+..+|..|.+.+..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~ 20 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS 20 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc
Confidence 79999999999999975444
No 247
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=52.76 E-value=55 Score=20.40 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCceeEEEee----CcEEEEEeCChhhHHHHHHHhc
Q psy10320 18 RDLEKFVKGYGRIRDVILK----NGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 18 ~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~a~~a~~~l~ 58 (262)
.+|.+++..+| +....++ -++.|+.+.+.+.++.+.+.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45667778888 5556663 5688999989999888887664
No 248
>KOG4483|consensus
Probab=52.06 E-value=35 Score=28.78 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=41.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCc-eEEEecccCCCceEEEEecCHHHHHHHHH
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGE-VCYADAHKRHRNEGVVEFESSSDMKKALD 168 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 168 (262)
.+.|-|.++|.....+||-..|..|+. -..|.++. ...+|..|.....|..||-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEee--cceeEEeecchHHHHHHhh
Confidence 457889999999999999999998873 22333332 2568889999999999885
No 249
>PF14893 PNMA: PNMA
Probab=50.37 E-value=21 Score=29.58 Aligned_cols=49 Identities=10% Similarity=0.227 Sum_probs=32.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc-CCceEEEecc------cCCCceEEEEecCHH
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYADAH------KRHRNEGVVEFESSS 161 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~-~g~i~~~~~~------~~~~~~~~v~f~~~~ 161 (262)
...|.|.++|.++.+++|++.++. +-++-...+. ..+...++|+|...-
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 447889999999999999998875 2222222222 334556777776543
No 250
>KOG0862|consensus
Probab=50.18 E-value=11 Score=28.71 Aligned_cols=30 Identities=23% Similarity=0.483 Sum_probs=19.5
Q ss_pred HHHHHHHh-cCCceeEEEeeCcEEEEEeCCh
Q psy10320 18 RDLEKFVK-GYGRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 18 ~~l~~~F~-~~G~v~~v~i~~g~afV~f~~~ 47 (262)
++|.+.|. .||.-..-.+.+.||||+|.+-
T Consensus 89 edL~~EF~~~~~~~~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKNIIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhcccccCCccCCCeeEEehhHH
Confidence 45555564 4664333335689999999973
No 251
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.00 E-value=1.2e+02 Score=27.44 Aligned_cols=98 Identities=14% Similarity=0.109 Sum_probs=62.5
Q ss_pred CCCCHHHHHHHHhcCCceeEEEeeC-cEEEEEeCChhhHHHHHHHhc--Cccc------CCceEEEEEccCCCcccccCC
Q psy10320 13 YGVRERDLEKFVKGYGRIRDVILKN-GFGFVEFEDYRDADDAVYELN--GKSL------LGERVTVEIAKGIDRSQERGR 83 (262)
Q Consensus 13 ~~~t~~~l~~~F~~~G~v~~v~i~~-g~afV~f~~~~~a~~a~~~l~--~~~~------~g~~l~v~~~~~~~~~~~~~~ 83 (262)
|..-.++|.+.|..-+-|..|.+.. ||-++.+...--+...+..+. +..+ .|++|.|+++.+..
T Consensus 56 P~eiA~~i~~~l~~~~~~~~veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp------- 128 (577)
T COG0018 56 PREIAEEIAEKLDTDEIIEKVEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP------- 128 (577)
T ss_pred HHHHHHHHHHhccccCcEeEEEEcCCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC-------
Confidence 3334455555565545577777764 777666665444444444444 2222 47899999987532
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCC-ceEEEecc
Q psy10320 84 RGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAH 146 (262)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~ 146 (262)
..-++||++=..+--+.|..+++..| .|.....+
T Consensus 129 -----------------------------tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yv 163 (577)
T COG0018 129 -----------------------------TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYV 163 (577)
T ss_pred -----------------------------CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeE
Confidence 23588999888888899999999888 45444433
No 252
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=47.70 E-value=55 Score=19.01 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=37.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCCh----hhHHHHHH
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDY----RDADDAVY 55 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~----~~a~~a~~ 55 (262)
|+.|.||.=.--...|.+.+...-.|..+.+ ..+.+-|.|... ++...+|+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~ 57 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE 57 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH
Confidence 5778888766777888999998877777777 478899999865 34444553
No 253
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=47.36 E-value=32 Score=27.44 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=29.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHH
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAV 54 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~ 54 (262)
...|+|||+++|-.-|..++...-.+... |.+-..|-|++..
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~--------v~M~QkEva~Rl~ 138 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDM--------VLMVQKEVAERLV 138 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceE--------EEEeHHHHHHHHh
Confidence 56799999999999999999875444332 3333445666555
No 254
>PF15063 TC1: Thyroid cancer protein 1
Probab=47.27 E-value=13 Score=23.09 Aligned_cols=23 Identities=13% Similarity=0.154 Sum_probs=20.0
Q ss_pred EcCCCCCCCHHHHHHHHhcCCce
Q psy10320 8 IGGLPYGVRERDLEKFVKGYGRI 30 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~~~G~v 30 (262)
+.||=.+++.++|..+|..-|..
T Consensus 30 saNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 30 SANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhccCHHHHHHHHHHccch
Confidence 56888899999999999999864
No 255
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=47.00 E-value=57 Score=19.92 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=37.1
Q ss_pred HHHHHHhhcCC-ceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 128 QDLKDFMRQVG-EVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 128 ~~l~~~f~~~g-~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
++|.+.|...| +|..+.-. ..+....||+.+...+... .++=..+++..+.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 46778888777 56665443 2234567788776655333 35667788888888765443
No 256
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=46.48 E-value=93 Score=21.27 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=21.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK 36 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~ 36 (262)
-+|.| ||+.++. |-++|+.=|+|..|...
T Consensus 6 QtVqV--lPPYTnK--LSDYfeSPGKI~svItv 34 (145)
T TIGR02542 6 QTVQV--LPPYTNK--LSDYFESPGKIQSVITV 34 (145)
T ss_pred cceEe--cCCccch--hhHHhcCCCceEEEEEE
Confidence 34444 7777765 88999999999887554
No 257
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=45.57 E-value=68 Score=23.19 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=24.8
Q ss_pred eeEEEee---CcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 30 IRDVILK---NGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 30 v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
|.+|.++ +||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCCE
Confidence 6677774 899999999888888888776653
No 258
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=45.32 E-value=84 Score=20.41 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCC-ceeEEEeeCc----EEEEEeCChhhHHHHHHHhc
Q psy10320 17 ERDLEKFVKGYG-RIRDVILKNG----FGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 17 ~~~l~~~F~~~G-~v~~v~i~~g----~afV~f~~~~~a~~a~~~l~ 58 (262)
.+.+.++++.+| ++.++.+..| .+.+++++.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 345777888775 7888888644 67788998888777653433
No 259
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=45.18 E-value=11 Score=30.98 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCceeEEEe----eCcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 17 ERDLEKFVKGYGRIRDVIL----KNGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 17 ~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
...|.+++.+.|+|..-.| ..|.+||..-.+++++++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 4677888888888766554 5799999999999999999998874
No 260
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=43.98 E-value=55 Score=20.09 Aligned_cols=57 Identities=19% Similarity=0.336 Sum_probs=36.1
Q ss_pred HHHHHHhhcCC-ceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 128 QDLKDFMRQVG-EVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 128 ~~l~~~f~~~g-~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
.+|.+.|+..| ++..+..+ ..+-..-+|+.....+... .|+=+.+++..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46788888888 56666544 2233456677665543333 3566778899988876543
No 261
>KOG4213|consensus
Probab=43.91 E-value=29 Score=25.76 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=31.0
Q ss_pred CCHHHHHHHHhcC-CceeEEEee---------CcEEEEEeCChhhHHHHHHH
Q psy10320 15 VRERDLEKFVKGY-GRIRDVILK---------NGFGFVEFEDYRDADDAVYE 56 (262)
Q Consensus 15 ~t~~~l~~~F~~~-G~v~~v~i~---------~g~afV~f~~~~~a~~a~~~ 56 (262)
.|+++|..+..-- |.+..|.+. +|-.||.|.+.+.|...++.
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5666666655432 688888872 68899999999999987743
No 262
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=43.67 E-value=49 Score=21.09 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=24.9
Q ss_pred ceEEEecccCCCceEEEEecCHHHHHHHHHHhCCc
Q psy10320 139 EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA 173 (262)
Q Consensus 139 ~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~ 173 (262)
.|..+-....-+||.|||=.+..++..|+..+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 45566666678999999999999999999766543
No 263
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=41.94 E-value=59 Score=20.49 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=20.4
Q ss_pred eeEEEeeCcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 30 IRDVILKNGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 30 v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
|..+....+..+|.|+..++-+.|. .|.|.
T Consensus 47 v~~~~~~~~~~i~~~~gi~~r~~Ae-~l~g~ 76 (84)
T PF01782_consen 47 VESVRPHGKSLIVKFEGIDDREAAE-ALRGC 76 (84)
T ss_dssp EEEEEEETTEEEEEETT--SHHHHH-TTTT-
T ss_pred EEEEEEeCCEEEEEEcCCCCHHHHH-hhCCC
Confidence 4444456889999999999988887 55553
No 264
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.81 E-value=49 Score=19.96 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=21.2
Q ss_pred CHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHH
Q psy10320 16 RERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAV 54 (262)
Q Consensus 16 t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~ 54 (262)
|-=||.+++..||-| |.|.+.+.+...+
T Consensus 3 tfYDVqQlLK~~G~i-----------vyfg~r~~~iemm 30 (68)
T COG4483 3 TFYDVQQLLKKFGII-----------VYFGKRLYDIEMM 30 (68)
T ss_pred cHHHHHHHHHHCCee-----------eecCCHHHHHHHH
Confidence 345889999999965 7777777777665
No 265
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=40.84 E-value=26 Score=20.98 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=16.0
Q ss_pred CceeEEEeeCcEEEEEeCCh
Q psy10320 28 GRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~~ 47 (262)
|.|+.....+||+||.-.+.
T Consensus 3 G~V~~~~~~kgyGFI~~~~~ 22 (66)
T PF00313_consen 3 GTVKWFDDEKGYGFITSDDG 22 (66)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCceEEEEccc
Confidence 66777777799999998864
No 266
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=39.83 E-value=25 Score=27.97 Aligned_cols=42 Identities=26% Similarity=0.491 Sum_probs=30.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHh--cCCceeEEEeeCcEEEEEeCChhhHHHHH
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVK--GYGRIRDVILKNGFGFVEFEDYRDADDAV 54 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~--~~G~v~~v~i~~g~afV~f~~~~~a~~a~ 54 (262)
..++|+|||++++..-|.+++. .||.+.-+ -+-..|.|++.+
T Consensus 98 ~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~---------l~vq~e~a~rl~ 141 (262)
T PF00398_consen 98 PLLVVGNLPYNISSPILRKLLELYRFGRVRMV---------LMVQKEVAERLL 141 (262)
T ss_dssp EEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE---------EEEEHHHHHHHH
T ss_pred ceEEEEEecccchHHHHHHHhhcccccccceE---------EEEehhhhhhcc
Confidence 4689999999999999999987 45644322 233456777766
No 267
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=39.07 E-value=1.1e+02 Score=27.08 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=37.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHh----cCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVK----GYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~----~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~ 58 (262)
+.|.++.-..+.+--+|..+|. .+|.|+.+.+. ....++.|.+.++|..|+..+-
T Consensus 190 ~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 190 EALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3444443322333456777775 57888888873 4567889999999999987754
No 268
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.23 E-value=1.3e+02 Score=22.18 Aligned_cols=51 Identities=18% Similarity=0.170 Sum_probs=40.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~ 58 (262)
++-| +|+..+.++-|.++.+.+|.|-.. -...-.+.|-+.+..+.|+..+.
T Consensus 114 ~iRv-~l~~~i~~erl~ei~E~~gvI~Ef--ee~~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 114 TIRV-KLKKPIQEERLQEISEWHGVIFEF--EEDDKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred eEEE-ecCccchHHHHHHHHHHhceeEEe--cCCcEEEEeccHHHHHHHHHHHH
Confidence 4445 789999999999999999988666 33344677888999999997764
No 269
>PF13104 DUF3956: Protein of unknown function (DUF3956)
Probab=37.80 E-value=24 Score=18.81 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=9.9
Q ss_pred CccceEEEcCCCC
Q psy10320 1 MVGTKVYIGGLPY 13 (262)
Q Consensus 1 ~~~~~l~V~nl~~ 13 (262)
|.++++||.++|.
T Consensus 1 m~sc~~fvngqp~ 13 (45)
T PF13104_consen 1 MESCVVFVNGQPF 13 (45)
T ss_pred CceEEEEecCCee
Confidence 6778888887774
No 270
>KOG2146|consensus
Probab=36.73 E-value=1.5e+02 Score=23.91 Aligned_cols=11 Identities=27% Similarity=0.350 Sum_probs=4.8
Q ss_pred EEEeCChhhHH
Q psy10320 41 FVEFEDYRDAD 51 (262)
Q Consensus 41 fV~f~~~~~a~ 51 (262)
.+.|++...++
T Consensus 56 ilgfEDdVVie 66 (354)
T KOG2146|consen 56 ILGFEDDVVIE 66 (354)
T ss_pred hhccccchhHH
Confidence 44555533333
No 271
>PRK12450 foldase protein PrsA; Reviewed
Probab=35.07 E-value=93 Score=25.55 Aligned_cols=43 Identities=19% Similarity=0.373 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhc--Cccc
Q psy10320 14 GVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELN--GKSL 62 (262)
Q Consensus 14 ~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~--~~~~ 62 (262)
.+|+++|++++..|.+ .+.+ ..|.+.+.+.|+.++..+. |..|
T Consensus 132 ~Vtd~evk~~y~~~~~--~~~~----~~I~~~~~~~A~~i~~~l~~~G~dF 176 (309)
T PRK12450 132 TISKKDYRQAYDAYTP--TMTA----EIMQFEKEEDAKAALEAVKAEGADF 176 (309)
T ss_pred CCCHHHHHHHHHHhCc--ccee----EEEEeCCHHHHHHHHHHHHhcCCCH
Confidence 4899999999998743 2222 3478889999999998885 4444
No 272
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=35.05 E-value=1.2e+02 Score=19.67 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=32.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-ceeEEEee--------C----------cEEEEEeCChhh
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKG-YG-RIRDVILK--------N----------GFGFVEFEDYRD 49 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~i~--------~----------g~afV~f~~~~~ 49 (262)
..|+-.+++.+|..||++.++. || .|..|... . --|+|.+...+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 4556667899999999999986 66 46566541 1 268888887643
No 273
>PRK15464 cold shock-like protein CspH; Provisional
Probab=35.03 E-value=30 Score=21.28 Aligned_cols=20 Identities=30% Similarity=0.413 Sum_probs=15.6
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-..-.+||+||+=.+
T Consensus 6 ~G~Vk~fn~~KGfGFI~~~~ 25 (70)
T PRK15464 6 TGIVKTFDRKSGKGFIIPSD 25 (70)
T ss_pred eEEEEEEECCCCeEEEccCC
Confidence 37777777789999997665
No 274
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=34.91 E-value=27 Score=20.91 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=10.7
Q ss_pred CHHHHHHHHhcCCce
Q psy10320 16 RERDLEKFVKGYGRI 30 (262)
Q Consensus 16 t~~~l~~~F~~~G~v 30 (262)
|-=||.+++.+||.+
T Consensus 3 tlyDVqQLLK~fG~~ 17 (62)
T PF06014_consen 3 TLYDVQQLLKKFGII 17 (62)
T ss_dssp SHHHHHHHHHTTS--
T ss_pred cHHHHHHHHHHCCEE
Confidence 345899999999965
No 275
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=34.84 E-value=84 Score=21.45 Aligned_cols=11 Identities=0% Similarity=0.060 Sum_probs=5.3
Q ss_pred HHHHHHHhcCC
Q psy10320 18 RDLEKFVKGYG 28 (262)
Q Consensus 18 ~~l~~~F~~~G 28 (262)
..|.++++.|+
T Consensus 85 ~~~~~lY~~~k 95 (112)
T cd01611 85 ATMSQLYEEHK 95 (112)
T ss_pred hHHHHHHHHhC
Confidence 44455555544
No 276
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=34.82 E-value=1.1e+02 Score=25.61 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=17.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGY 27 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~ 27 (262)
+|+++ .|...+|.+||.++|..|
T Consensus 247 ~Ti~~-~l~~~~t~~~i~~~y~~~ 269 (349)
T COG0002 247 ATIYL-KLKDLVTLEELHAAYEEF 269 (349)
T ss_pred EEEEE-ecCCCCCHHHHHHHHHHH
Confidence 45555 355559999999999865
No 277
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.19 E-value=67 Score=26.37 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=23.3
Q ss_pred EEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 153 GVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 153 ~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
|||.|++..+|+.|++.+....- ..+.+..+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 79999999999999987665543 333555543
No 278
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=34.03 E-value=73 Score=19.56 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.4
Q ss_pred cEEEEEeCChhhHHHHHHHhcCcccC
Q psy10320 38 GFGFVEFEDYRDADDAVYELNGKSLL 63 (262)
Q Consensus 38 g~afV~f~~~~~a~~a~~~l~~~~~~ 63 (262)
.+.+|.|.+..+|.+|-..|....+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 47899999999999998887765553
No 279
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=33.98 E-value=1.1e+02 Score=24.86 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=42.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCC------------CceEEEEecCHHHHHH
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRH------------RNEGVVEFESSSDMKK 165 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~------------~~~~~v~f~~~~~a~~ 165 (262)
..|...|+..++.-..+...|.+||+|+.+.+.... .....+.|-+.+.|..
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 357788999999999999999999999999988433 3456788888777654
No 280
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=33.42 E-value=37 Score=20.67 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.2
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-....+||+||.=.+
T Consensus 3 ~G~Vk~f~~~kGfGFI~~~~ 22 (68)
T TIGR02381 3 IGIVKWFNNAKGFGFICPEG 22 (68)
T ss_pred CeEEEEEeCCCCeEEEecCC
Confidence 37777777789999998766
No 281
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=33.32 E-value=53 Score=25.95 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCC
Q psy10320 6 VYIGGLPYGVRERDLEKFVKGYG 28 (262)
Q Consensus 6 l~V~nl~~~~t~~~l~~~F~~~G 28 (262)
+.|+|||+.++.+.|.+++..+|
T Consensus 97 ~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 97 KVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred eEEEcCChhhHHHHHHHHhccCC
Confidence 78999999999999999997544
No 282
>KOG1295|consensus
Probab=33.19 E-value=47 Score=27.86 Aligned_cols=63 Identities=13% Similarity=0.264 Sum_probs=44.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCc-eEEEecc-------cCCCceEEEEecCHHHHHHHHHHhCCccc
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGE-VCYADAH-------KRHRNEGVVEFESSSDMKKALDKLDNAEL 175 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~-------~~~~~~~~v~f~~~~~a~~a~~~l~g~~~ 175 (262)
-+.+.|.+||..+++.++.+-...+-. +.+..+. ....+.+||.|..+++...-...++|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 347888999999999888877766542 2222222 22355789999999998887777787755
No 283
>PRK02302 hypothetical protein; Provisional
Probab=32.82 E-value=1.3e+02 Score=19.52 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=28.5
Q ss_pred HHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcc
Q psy10320 23 FVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKS 61 (262)
Q Consensus 23 ~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~ 61 (262)
-+.+||.|..+--...|+.+ |-+.++|+..++.|....
T Consensus 22 ~LrkfG~I~Y~Skk~kYvvl-Yvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 22 KLSKYGDIVYHSKRSRYLVL-YVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HHhhcCcEEEEeccccEEEE-EECHHHHHHHHHHHhcCC
Confidence 35689999877666677754 567789999988887654
No 284
>PHA01632 hypothetical protein
Probab=32.59 E-value=52 Score=19.04 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=16.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhc
Q psy10320 6 VYIGGLPYGVRERDLEKFVKG 26 (262)
Q Consensus 6 l~V~nl~~~~t~~~l~~~F~~ 26 (262)
|.|..+|..-|+++|+.++.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445678999999999987754
No 285
>smart00457 MACPF membrane-attack complex / perforin.
Probab=32.50 E-value=88 Score=23.56 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=21.8
Q ss_pred cCCCCCCCHHHHHHHHhcCCc--eeEEEe
Q psy10320 9 GGLPYGVRERDLEKFVKGYGR--IRDVIL 35 (262)
Q Consensus 9 ~nl~~~~t~~~l~~~F~~~G~--v~~v~i 35 (262)
.+||...+..+...||+.||. |..+.+
T Consensus 31 ~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~ 59 (194)
T smart00457 31 RDLPDQYNRGAYARFIDKYGTHYITSATL 59 (194)
T ss_pred HhCccccCHHHHHHHHHHhCCeEEEeeee
Confidence 478888889999999999996 555555
No 286
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=32.25 E-value=1.4e+02 Score=19.64 Aligned_cols=50 Identities=16% Similarity=0.351 Sum_probs=32.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcC--------CceeEEEe-------------eCc-EEEEEeCChhhHHHHHHH
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGY--------GRIRDVIL-------------KNG-FGFVEFEDYRDADDAVYE 56 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~--------G~v~~v~i-------------~~g-~afV~f~~~~~a~~a~~~ 56 (262)
++|| |.+.++++++.++.+.+ |.|..+.- ..| |.++.|.-..++...++.
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 4444 46788888887776544 46655553 134 678888877777666644
No 287
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=32.20 E-value=37 Score=20.75 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=15.3
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-..-.+||+||+=.+
T Consensus 5 ~G~Vk~f~~~kGyGFI~~~~ 24 (69)
T PRK09507 5 KGNVKWFNESKGFGFITPED 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 36777777789999997665
No 288
>PRK02886 hypothetical protein; Provisional
Probab=31.92 E-value=1.4e+02 Score=19.31 Aligned_cols=39 Identities=13% Similarity=0.351 Sum_probs=28.8
Q ss_pred HHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCccc
Q psy10320 23 FVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSL 62 (262)
Q Consensus 23 ~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~ 62 (262)
-+.+||.|..+--...|+.+ |-+.++|+..++.|....|
T Consensus 20 ~LrkyG~I~Y~Skr~kYvvl-Yvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 20 QLRKFGNVHYVSKRLKYAVL-YCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HHhhcCcEEEEeccccEEEE-EECHHHHHHHHHHHhcCCC
Confidence 35689999877666677654 5677899999888877543
No 289
>KOG2295|consensus
Probab=31.78 E-value=9.2 Score=33.49 Aligned_cols=68 Identities=15% Similarity=0.235 Sum_probs=50.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceE
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~ 180 (262)
.|.|++.|+++.++..+|..+|..+..+..+.+.. .-.....|.|+---....|+.+||+..+....+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 46799999999999999999999887666554431 123356788887777777888888877665544
No 290
>PRK10943 cold shock-like protein CspC; Provisional
Probab=31.46 E-value=39 Score=20.66 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.3
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-..-.+||+||+=.+
T Consensus 5 ~G~Vk~f~~~kGfGFI~~~~ 24 (69)
T PRK10943 5 KGQVKWFNESKGFGFITPAD 24 (69)
T ss_pred ceEEEEEeCCCCcEEEecCC
Confidence 36777777779999997654
No 291
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=31.32 E-value=1.4e+02 Score=18.82 Aligned_cols=50 Identities=10% Similarity=0.158 Sum_probs=37.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc-CC-ceeEEEe---eC--cEEEEEeCChhhHHHHH
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKG-YG-RIRDVIL---KN--GFGFVEFEDYRDADDAV 54 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~-~G-~v~~v~i---~~--g~afV~f~~~~~a~~a~ 54 (262)
.-|+-.++..+|..+|++.++. || .|..|.. +. .-|||.+...+.|...-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 4566678899999999999986 65 4555554 23 35999999888887754
No 292
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=31.30 E-value=43 Score=20.86 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=14.4
Q ss_pred CceeEEEeeCcEEEEEeCC
Q psy10320 28 GRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~ 46 (262)
|.|+-..-.+||+||.=.+
T Consensus 4 G~Vkwfn~~KGfGFI~~~~ 22 (74)
T PRK09937 4 GTVKWFNNAKGFGFICPEG 22 (74)
T ss_pred eEEEEEeCCCCeEEEeeCC
Confidence 6677777779999996553
No 293
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=31.25 E-value=1.6e+02 Score=20.88 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=22.9
Q ss_pred eeEEEee---CcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 30 IRDVILK---NGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 30 v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
+..+.++ +||-||++....+...++..+.|.
T Consensus 28 ~~~~~vp~~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 28 VYSILAPESLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred EEEEEccCCCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 4445553 899999999887777888676663
No 294
>PRK14998 cold shock-like protein CspD; Provisional
Probab=31.21 E-value=44 Score=20.75 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.1
Q ss_pred CceeEEEeeCcEEEEEeCC
Q psy10320 28 GRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~ 46 (262)
|.|+-....+||+||.=.+
T Consensus 4 G~Vkwfn~~kGfGFI~~~~ 22 (73)
T PRK14998 4 GTVKWFNNAKGFGFICPEG 22 (73)
T ss_pred eEEEEEeCCCceEEEecCC
Confidence 7777777789999997655
No 295
>PRK15463 cold shock-like protein CspF; Provisional
Probab=30.72 E-value=40 Score=20.71 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=15.6
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-..-.+||+||+=.+
T Consensus 6 ~G~Vk~fn~~kGfGFI~~~~ 25 (70)
T PRK15463 6 TGIVKTFDGKSGKGLITPSD 25 (70)
T ss_pred eEEEEEEeCCCceEEEecCC
Confidence 47777777789999997665
No 296
>KOG3671|consensus
Probab=30.27 E-value=2.7e+02 Score=24.63 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=35.5
Q ss_pred CCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCC
Q psy10320 124 RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDN 172 (262)
Q Consensus 124 ~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g 172 (262)
-+.+.+|..-|..+-.-..++-+....+++-+.|.++++|++..+.+..
T Consensus 89 liWdqELY~nf~y~q~r~ffhtFegddc~aGLnF~~E~EA~~F~k~V~~ 137 (569)
T KOG3671|consen 89 LIWDQELYQNFEYRQPRTFFHTFEGDDCQAGLNFASEEEAQKFRKKVQD 137 (569)
T ss_pred eeehHHhhhhceeccCccceeeeccccceeeecccCHHHHHHHHHHHHH
Confidence 5778888888876665555544444456788899999999988876653
No 297
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=29.85 E-value=47 Score=19.71 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=15.4
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+.....+||+||.-.+
T Consensus 2 ~G~Vk~~~~~kGfGFI~~~~ 21 (65)
T cd04458 2 TGTVKWFDDEKGFGFITPDD 21 (65)
T ss_pred cEEEEEEECCCCeEEEecCC
Confidence 36677666679999998776
No 298
>PF04993 TfoX_N: TfoX N-terminal domain; InterPro: IPR007076 This domain is found in a number of bacterial proteins including the TfoX gene product of Haemophilus influenzae. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes []. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found in association with the C-terminal domain in some, but not all members of this group, suggesting this is an autonomous and functionally unrelated domain.; PDB: 2OD0_A.
Probab=29.59 E-value=68 Score=20.97 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=16.7
Q ss_pred HHHHHhcCCceeEEEeeCcEEEE
Q psy10320 20 LEKFVKGYGRIRDVILKNGFGFV 42 (262)
Q Consensus 20 l~~~F~~~G~v~~v~i~~g~afV 42 (262)
|.++|+.+|.|..-.+--|+||-
T Consensus 1 v~~~l~~lg~v~~k~MFGg~g~~ 23 (97)
T PF04993_consen 1 VREQLAPLGEVTEKKMFGGYGIY 23 (97)
T ss_dssp -HHHHGGGS-EEEEEETTEEEEE
T ss_pred ChhHhcCcCCeeEeccCCeEEEE
Confidence 46889999999888887776663
No 299
>KOG2187|consensus
Probab=29.50 E-value=52 Score=29.00 Aligned_cols=68 Identities=21% Similarity=0.294 Sum_probs=46.3
Q ss_pred EcCCCCCCCHHHHHHHHhc-CCceeEE-Ee--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 8 IGGLPYGVRERDLEKFVKG-YGRIRDV-IL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~~-~G~v~~v-~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
+.++|+..-...+...+.. ++....- .+ ...+|++.|+++..+.+|+..++|..+.+..+.+......
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred eeccCchhhhhHHHhhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 3455555555555554443 2322221 12 3689999999999999999999999988887777666543
No 300
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=29.14 E-value=1.4e+02 Score=19.53 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCCCCCCHHHHHHHHhcCCce-eEEEee----CcEEEEEeCChhhHHHHHHHhcC
Q psy10320 10 GLPYGVRERDLEKFVKGYGRI-RDVILK----NGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 10 nl~~~~t~~~l~~~F~~~G~v-~~v~i~----~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
-+.+.++...|..-|..-|.- +-..+- +.+|-|.|.+.+.+..|.+.|-.
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lre 73 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLRE 73 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHH
Confidence 345678888888777666631 122221 57999999999999998876543
No 301
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=28.88 E-value=57 Score=19.64 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=16.8
Q ss_pred HHhcCCceeEEEeeCcEEEEEeCCh
Q psy10320 23 FVKGYGRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 23 ~F~~~G~v~~v~i~~g~afV~f~~~ 47 (262)
+|+.=|+|.+++ -.||+|.|.-+
T Consensus 31 ife~~GEvl~ik--gdYa~vr~~~P 53 (67)
T PF11910_consen 31 IFEGPGEVLDIK--GDYAQVRFRVP 53 (67)
T ss_pred eecCCCeEEEec--CCEEEEEecCC
Confidence 467778876664 67999999543
No 302
>KOG0156|consensus
Probab=28.61 E-value=1.3e+02 Score=26.61 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=40.7
Q ss_pred EEcCCCCCC---CHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceE
Q psy10320 7 YIGGLPYGV---RERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERV 67 (262)
Q Consensus 7 ~V~nl~~~~---t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 67 (262)
+||||+.-. ....+..+-++||+|-.+.+-. .-.|...+.+.|++|+ .-++..|.++..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~-~~~Vviss~~~akE~l-~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS-VPVVVISSYEAAKEVL-VKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC-ceEEEECCHHHHHHHH-HhCCccccCCCC
Confidence 466765422 3344555556899998666632 2357778889999999 667888888875
No 303
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=28.52 E-value=72 Score=25.58 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKG 26 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~ 26 (262)
.+.|+|+|+.++..-|..++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 4689999999999999888864
No 304
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=28.20 E-value=74 Score=25.96 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=30.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
.+.|.|||++++...|..++.....+.. +.+-| -.|-|++.+ +-.|.
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~-------~vlm~-QkEvA~Rl~-A~pg~ 149 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRC-------AVLMF-QKEFALRLL-AQPGD 149 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCce-------eeeee-hHHHHHHHh-cCCCC
Confidence 3678999999999999999865333322 22223 356777766 44443
No 305
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=27.98 E-value=1e+02 Score=18.61 Aligned_cols=27 Identities=30% Similarity=0.565 Sum_probs=19.1
Q ss_pred CHHHHHHHHhcCCceeEEEe------eCcEEEE
Q psy10320 16 RERDLEKFVKGYGRIRDVIL------KNGFGFV 42 (262)
Q Consensus 16 t~~~l~~~F~~~G~v~~v~i------~~g~afV 42 (262)
-+.+|...|-+--.|.++.| .+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 34556666777778888877 3788887
No 306
>PRK09890 cold shock protein CspG; Provisional
Probab=27.66 E-value=47 Score=20.35 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=15.5
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+...-.+||+||+=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK09890 6 TGLVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEECCCCcEEEecCC
Confidence 47777777789999997664
No 307
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=27.51 E-value=2.9e+02 Score=25.02 Aligned_cols=37 Identities=11% Similarity=0.105 Sum_probs=28.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH 146 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~ 146 (262)
.-....+|+.+|...+.++--.++....-.++.+.+.
T Consensus 298 Gl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~ 334 (621)
T COG0445 298 GLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEIL 334 (621)
T ss_pred CCCCceEecCcccccCCHHHHHHHHHhCcccccceee
Confidence 3345689999999999988888888777666666665
No 308
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=27.39 E-value=2.4e+02 Score=20.35 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=26.3
Q ss_pred eEEEecccCCCceEEEEecCHHHHHHHHHHhCC
Q psy10320 140 VCYADAHKRHRNEGVVEFESSSDMKKALDKLDN 172 (262)
Q Consensus 140 i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g 172 (262)
|..+.+...-+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 666666667799999999988888888876654
No 309
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=27.26 E-value=72 Score=21.30 Aligned_cols=21 Identities=29% Similarity=0.724 Sum_probs=15.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKG 26 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~ 26 (262)
++.++++.|| |.+|+.+|+..
T Consensus 64 g~~i~~g~lP---t~~eVe~Fl~~ 84 (105)
T PF09702_consen 64 GNYIIVGYLP---TDEEVEDFLDD 84 (105)
T ss_pred CCEEecCCCC---ChHHHHHHHHH
Confidence 4678899998 56677776653
No 310
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=26.95 E-value=49 Score=20.25 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=14.9
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-..-.+||+||.=.+
T Consensus 6 ~G~Vk~f~~~kGfGFI~~~~ 25 (70)
T PRK10354 6 TGIVKWFNADKGFGFITPDD 25 (70)
T ss_pred eEEEEEEeCCCCcEEEecCC
Confidence 46777666779999997553
No 311
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=26.67 E-value=1.6e+02 Score=25.39 Aligned_cols=45 Identities=27% Similarity=0.379 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHhc----CCceeEEEee-------CcEEEEEeCChhhHHHHHHHhc
Q psy10320 14 GVRERDLEKFVKG----YGRIRDVILK-------NGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 14 ~~t~~~l~~~F~~----~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~ 58 (262)
+.+--+|..+|.. +|.|+.+.+. ....++.|.+.++|..|+..+.
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~ 198 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDII 198 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHH
Confidence 4444467778753 7888888873 4567889999999999886554
No 312
>KOG3702|consensus
Probab=26.62 E-value=1.7e+02 Score=26.69 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=47.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
++||+.|--...+..-+...+..+++++...+. -+-||++|..+..+..|. .|.+..|....+.+
T Consensus 512 p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~-s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 512 PTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAK-SLPNKKFASKCLKS 584 (681)
T ss_pred CceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhh-ccccccccccceec
Confidence 367777776667777777777777777666552 357999999999887776 77777776665554
No 313
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=26.13 E-value=1.9e+02 Score=18.67 Aligned_cols=13 Identities=8% Similarity=0.031 Sum_probs=5.6
Q ss_pred CCCCCHHHHHHHH
Q psy10320 12 PYGVRERDLEKFV 24 (262)
Q Consensus 12 ~~~~t~~~l~~~F 24 (262)
|.+.|-.++..+.
T Consensus 23 ~~~~tv~~~~~~l 35 (87)
T cd01612 23 SATQSFQAVIDFL 35 (87)
T ss_pred CCCCCHHHHHHHH
Confidence 3444444444444
No 314
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=25.44 E-value=1.6e+02 Score=18.77 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=23.4
Q ss_pred EEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCCh----hhHHHHHHHhcCcccCCceEEEE
Q psy10320 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDY----RDADDAVYELNGKSLLGERVTVE 70 (262)
Q Consensus 6 l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~----~~a~~a~~~l~~~~~~g~~l~v~ 70 (262)
|.+++|.+.-.- +++--+++-..|-.+.|. -..|||.|... +....+++.+....+..+.|.|+
T Consensus 3 lkfg~It~eeA~-~~QYeLsk~~~vyRvFiNgYar~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTve 72 (88)
T PF11491_consen 3 LKFGNITPEEAM-VKQYELSKNEAVYRVFINGYARNGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVE 72 (88)
T ss_dssp EE--S-TTTTTH-HHHHTTTTTTTB------TTSS--EEE--B-S-SHHHH---HHHTTT-SS-------S
T ss_pred cccCCCCHHHHH-HHHHHhhcccceeeeeecccccceEEEECcccCCHHHHHHHHHhcChhheeeccccHH
Confidence 455777554322 233335555667777775 46789999853 66667788888888887777764
No 315
>COG3444 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]
Probab=25.32 E-value=2.8e+02 Score=20.36 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=18.5
Q ss_pred CcEEEEEeCChhhHHHHHHHhc
Q psy10320 37 NGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 37 ~g~afV~f~~~~~a~~a~~~l~ 58 (262)
...+|+.|.++.+|..+++.-.
T Consensus 76 ~~~v~ll~~~p~d~~~lve~gv 97 (159)
T COG3444 76 GQKVFLLFENPQDVLRLVEGGV 97 (159)
T ss_pred CeEEEEEECCHHHHHHHHhcCC
Confidence 4579999999999999997644
No 316
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=24.69 E-value=68 Score=17.93 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=15.9
Q ss_pred EcCCCCCCCHHHHHHHHhcC
Q psy10320 8 IGGLPYGVRERDLEKFVKGY 27 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~~~ 27 (262)
|-+|+..++.++|+..|...
T Consensus 5 vLgl~~~~~~~~ik~~y~~l 24 (55)
T cd06257 5 ILGVPPDASDEEIKKAYRKL 24 (55)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 45788899999998888654
No 317
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=24.48 E-value=76 Score=23.94 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=16.7
Q ss_pred EcCCCCCCCHHH---HHHHHhcCCceeE
Q psy10320 8 IGGLPYGVRERD---LEKFVKGYGRIRD 32 (262)
Q Consensus 8 V~nl~~~~t~~~---l~~~F~~~G~v~~ 32 (262)
|.+||...+..+ ..+||..||...-
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH~v 80 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTHYV 80 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SEEE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcEEE
Confidence 457888888888 7889999997433
No 318
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=24.45 E-value=1.1e+02 Score=22.19 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGY 27 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~ 27 (262)
-+.|+|+|++++.+.|..++...
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~ 101 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEP 101 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcC
Confidence 46789999999988888888753
No 319
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=23.95 E-value=1.9e+02 Score=18.68 Aligned_cols=42 Identities=31% Similarity=0.441 Sum_probs=24.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCc--eeEEEe---eCcEEEEEe
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGR--IRDVIL---KNGFGFVEF 44 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~--v~~v~i---~~g~afV~f 44 (262)
.+-|||+|++..+-|.-...+.+..+. +.-+.- ..||+|-.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 467999999888777655555554432 221111 256666655
No 320
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=23.33 E-value=1.4e+02 Score=19.63 Aligned_cols=24 Identities=25% Similarity=0.237 Sum_probs=18.4
Q ss_pred CcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 37 NGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 37 ~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
.||.||++.-.+++..++..+.|.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 599999998767777777666663
No 321
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=23.31 E-value=81 Score=16.49 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=13.9
Q ss_pred CCCHHHHHHHHhcCCce
Q psy10320 14 GVRERDLEKFVKGYGRI 30 (262)
Q Consensus 14 ~~t~~~l~~~F~~~G~v 30 (262)
..++++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 46889999999998854
No 322
>PHA03008 hypothetical protein; Provisional
Probab=23.19 E-value=1.4e+02 Score=22.71 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=34.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~ 46 (262)
-+||.|+.+--...-|..+|.+|-.+..|....|--=|.|.+
T Consensus 23 ~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg~~dilfd~ 64 (234)
T PHA03008 23 IAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPGDIDILFDD 64 (234)
T ss_pred EEEEecccccccccHHHHHHhhccccceEEEccCCcceEecC
Confidence 578999998888899999999999998888766655555655
No 323
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=22.81 E-value=2.2e+02 Score=25.74 Aligned_cols=44 Identities=25% Similarity=0.363 Sum_probs=33.2
Q ss_pred CCHHHHHHHHh----cCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhc
Q psy10320 15 VRERDLEKFVK----GYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 15 ~t~~~l~~~F~----~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~ 58 (262)
.+--+|..+|- .+|.|+++.+. ...+++.|.+.++|..|+..+.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 34457888872 47889988883 4678899999999998886643
No 324
>PLN02707 Soluble inorganic pyrophosphatase
Probab=22.66 E-value=42 Score=26.86 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCCceeEEEeeCcEEEE-EeCChhhHHHHHHHhcC
Q psy10320 17 ERDLEKFVKGYGRIRDVILKNGFGFV-EFEDYRDADDAVYELNG 59 (262)
Q Consensus 17 ~~~l~~~F~~~G~v~~v~i~~g~afV-~f~~~~~a~~a~~~l~~ 59 (262)
-++|..+|..|- +.+-+-.+-+||+ +|.+.+.|.+.|+..+.
T Consensus 207 l~~I~~fF~~YK-~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 207 LTAIRDWFRDYK-IPDGKPANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred HHHHHHHHHHhc-CCCCCceeeccccCCcCCHHHHHHHHHHHHH
Confidence 578899999883 2221222335554 78899999988876554
No 325
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=22.14 E-value=2e+02 Score=18.56 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHhcCCc-eeEEEeeCcEEEEEeCChhhHHHHHHHhcCcc
Q psy10320 14 GVRERDLEKFVKGYGR-IRDVILKNGFGFVEFEDYRDADDAVYELNGKS 61 (262)
Q Consensus 14 ~~t~~~l~~~F~~~G~-v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~ 61 (262)
.+|.+||..+-..||. | +.+.|+..+..|.|..
T Consensus 14 ~iT~~eLlkyskqy~i~i---------------t~~QA~~I~~~lr~k~ 47 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISI---------------TKKQAEQIANILRGKN 47 (85)
T ss_pred cCCHHHHHHHHHHhCCCC---------------CHHHHHHHHHHHhcCC
Confidence 6799999999999983 3 5678888887777653
No 326
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=22.14 E-value=2.1e+02 Score=17.91 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHh-cCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEE
Q psy10320 10 GLPYGVRERDLEKFVK-GYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVE 70 (262)
Q Consensus 10 nl~~~~t~~~l~~~F~-~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 70 (262)
-+|-.+.-+||.+-.. .||.-.++.....--.|-..+.++-++|++.++. .-+-+.|.|-
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRil 75 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNNELLIPLKNQEDLDRAIELLDR-SPHMKSLRIL 75 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecccEEEeccCHHHHHHHHHHHcc-CccccceeEe
Confidence 4566778888877665 6998888888777788999999999999988876 3344445443
No 327
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=21.84 E-value=82 Score=18.02 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.1
Q ss_pred EcCCCCCCCHHHHHHHHhcC
Q psy10320 8 IGGLPYGVRERDLEKFVKGY 27 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~~~ 27 (262)
|-+|++.++.++|+..|...
T Consensus 6 vLgl~~~~~~~~ik~ay~~l 25 (60)
T smart00271 6 ILGVPRDASLDEIKKAYRKL 25 (60)
T ss_pred HcCCCCCCCHHHHHHHHHHH
Confidence 45788899999998888654
No 328
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=21.50 E-value=43 Score=19.94 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHHhcCCcee
Q psy10320 10 GLPYGVRERDLEKFVKGYGRIR 31 (262)
Q Consensus 10 nl~~~~t~~~l~~~F~~~G~v~ 31 (262)
.|...+|+++|.++....+.+.
T Consensus 5 Dls~~lTeEEl~~~i~~L~~~~ 26 (61)
T TIGR01639 5 DLSKKLSKEELNELINSLDEIP 26 (61)
T ss_pred HHhHHccHHHHHHHHHhhcCCC
Confidence 4667889999999988887653
No 329
>KOG3449|consensus
Probab=21.45 E-value=2.1e+02 Score=19.42 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHhcCCc-eeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccC
Q psy10320 13 YGVRERDLEKFVKGYGR-IRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63 (262)
Q Consensus 13 ~~~t~~~l~~~F~~~G~-v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~ 63 (262)
.+.+..+|+.+|...|. | +.+.+...|..|+|..|.
T Consensus 16 ~~psa~DikkIl~sVG~E~---------------d~e~i~~visel~GK~i~ 52 (112)
T KOG3449|consen 16 ASPSASDIKKILESVGAEI---------------DDERINLVLSELKGKDIE 52 (112)
T ss_pred CCCCHHHHHHHHHHhCccc---------------CHHHHHHHHHHhcCCCHH
Confidence 46788999999999983 3 567888889899998764
No 330
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=21.44 E-value=1.9e+02 Score=20.10 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 14 GVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 14 ~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
.++++||.-+.++.|. +.++|.+||+..+|-
T Consensus 82 ~i~eeDIkLV~eQa~V----------------sreeA~kAL~e~~GD 112 (122)
T COG1308 82 DISEEDIKLVMEQAGV----------------SREEAIKALEEAGGD 112 (122)
T ss_pred CCCHHHHHHHHHHhCC----------------CHHHHHHHHHHcCCc
Confidence 4788888888887763 678999999887763
No 331
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=20.85 E-value=1.6e+02 Score=16.07 Aligned_cols=22 Identities=18% Similarity=0.457 Sum_probs=18.6
Q ss_pred EcCCCCCCCHHHHHHHHhcCCc
Q psy10320 8 IGGLPYGVRERDLEKFVKGYGR 29 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~~~G~ 29 (262)
++++.+.++.++|.+.....|.
T Consensus 1 L~~~dyPa~k~~Lv~~A~~~gA 22 (44)
T PF11387_consen 1 LKGVDYPADKDELVRHARRNGA 22 (44)
T ss_pred CCCCCCCCCHHHHHHHHHHcCC
Confidence 4688899999999999988774
No 332
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=20.75 E-value=67 Score=21.72 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=16.0
Q ss_pred cCCCCCCCHHHHHHHHhcCCc
Q psy10320 9 GGLPYGVRERDLEKFVKGYGR 29 (262)
Q Consensus 9 ~nl~~~~t~~~l~~~F~~~G~ 29 (262)
|.|...+|+++|.+++.....
T Consensus 75 G~l~~kI~d~~L~~iL~~i~~ 95 (107)
T PF01984_consen 75 GQLRGKIDDEQLKEILEQISE 95 (107)
T ss_dssp TSSSS-B-HHHHHHHHHHHCC
T ss_pred CCCCCCcCHHHHHHHHHHHhh
Confidence 678889999999999987653
No 333
>PRK13828 rimM 16S rRNA-processing protein RimM; Provisional
Probab=20.61 E-value=2.1e+02 Score=20.88 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=26.0
Q ss_pred eeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 30 IRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 30 v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
|..++..++..+|.|+...+...|- .|.| ..|.|...
T Consensus 34 v~~~r~~~~~~lv~f~gi~dr~~Ae-~L~g-----~~l~i~~~ 70 (161)
T PRK13828 34 VALARPAKDGLVARLKGVATREAAE-ALRG-----LELYVPRD 70 (161)
T ss_pred EEEEEEECCEEEEEECCCCCHHHHH-HhcC-----CEEEEEHH
Confidence 4555556888899999999988887 5554 44555533
No 334
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=20.44 E-value=79 Score=18.49 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=16.1
Q ss_pred EcCCCCCCCHHHHHHHHhcC
Q psy10320 8 IGGLPYGVRERDLEKFVKGY 27 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~~~ 27 (262)
|-||++.++.++|+..|...
T Consensus 5 iLgl~~~~~~~eik~~y~~l 24 (64)
T PF00226_consen 5 ILGLPPDASDEEIKKAYRRL 24 (64)
T ss_dssp HCTSTTTSSHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHhh
Confidence 45889999999999888643
No 335
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=20.44 E-value=2.7e+02 Score=18.47 Aligned_cols=47 Identities=30% Similarity=0.358 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHhcCCceeEEEee-Cc----EEEEEeCChhhHHHHHHHhcC
Q psy10320 13 YGVRERDLEKFVKGYGRIRDVILK-NG----FGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 13 ~~~t~~~l~~~F~~~G~v~~v~i~-~g----~afV~f~~~~~a~~a~~~l~~ 59 (262)
..-++++|..+...=|.|.+|.+. .. .|.+...+.++++.+++.|+.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 344567777777755789999983 44 456788899999999988775
No 336
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=20.39 E-value=5.9e+02 Score=22.35 Aligned_cols=51 Identities=25% Similarity=0.341 Sum_probs=32.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC---C---ceeEEEe---eCcEEEEE-eCChhhHHHHH
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGY---G---RIRDVIL---KNGFGFVE-FEDYRDADDAV 54 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~---G---~v~~v~i---~~g~afV~-f~~~~~a~~a~ 54 (262)
++|.|.-||+.++.+.+.+.+... + .|.++.- ..+..||. +.....++..+
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~ 286 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVL 286 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCCceEEEEEECCCccHHHHH
Confidence 689999999999999998876432 2 3444443 24676654 44444444444
No 337
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=20.34 E-value=65 Score=20.24 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=16.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGY 27 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~ 27 (262)
+.|.|... ..++.++..+|+..|
T Consensus 3 v~i~~~~~-~~v~k~ea~~fL~~F 25 (76)
T PF08203_consen 3 VVIHVRGS-QHVSKDEAEQFLTEF 25 (76)
T ss_dssp -EEEESS--EE--HHHHHHHHHHH
T ss_pred eEEEecCc-ccCCHHHHHHHHHHH
Confidence 57788777 888999999888887
No 338
>PF15440 THRAP3_BCLAF1: THRAP3/BCLAF1 family
Probab=20.07 E-value=2.5e+02 Score=25.99 Aligned_cols=59 Identities=36% Similarity=0.422 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q psy10320 202 SRSKSRSRSRSSKSRSPRSRSKSGSPRKSKSKAKSVSRSPSPSKTRKRSRSRSDSRARKV 261 (262)
Q Consensus 202 ~r~~~r~rsr~~~r~~~r~rs~s~~~~rsr~r~rs~~rs~s~~~~r~rsrsrs~sr~r~r 261 (262)
.|+|+|++-++...=++|++++. +...+..++++.+++.+......|..+.-......+
T Consensus 1 gRSRSRSPKrRS~SPrsRS~Sr~-SdRsSs~rs~~ssss~Ss~~~~~R~~~~K~~q~k~~ 59 (646)
T PF15440_consen 1 GRSRSRSPKRRSPSPRSRSRSRN-SDRSSSDRSRSSSSSDSSRSSHWRMSSEKHGQNKER 59 (646)
T ss_pred CCccCCCccccCCCCCCCChhhc-ccccCCCCCCccccCCCCCCccccccccccccccCC
No 339
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=20.07 E-value=1.8e+02 Score=18.81 Aligned_cols=44 Identities=18% Similarity=0.423 Sum_probs=31.4
Q ss_pred CCHHHHHHHHhcCCceeEEE--------e--------eCcEEEEEeCChhhHHHHHHHhc
Q psy10320 15 VRERDLEKFVKGYGRIRDVI--------L--------KNGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 15 ~t~~~l~~~F~~~G~v~~v~--------i--------~~g~afV~f~~~~~a~~a~~~l~ 58 (262)
+..-+|+.+++.||.-..+. + -+|+.=|+|-.+++-+..++.+.
T Consensus 31 Ld~~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri~ 90 (91)
T PF13037_consen 31 LDHTTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERIK 90 (91)
T ss_pred cCceehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHhc
Confidence 44557889999999633222 1 27888899999999888886553
Done!