Query psy10320
Match_columns 262
No_of_seqs 242 out of 2144
Neff 10.7
Searched_HMMs 29240
Date Fri Aug 16 23:27:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 2E-35 6.8E-40 227.0 17.4 156 3-188 15-181 (213)
2 1qm9_A Polypyrimidine tract-bi 100.0 1.3E-34 4.4E-39 220.3 20.0 187 1-188 1-197 (198)
3 2adc_A Polypyrimidine tract-bi 100.0 8.8E-34 3E-38 220.2 21.5 185 3-188 34-228 (229)
4 1b7f_A Protein (SXL-lethal pro 100.0 8.4E-34 2.9E-38 210.2 20.1 152 2-185 2-168 (168)
5 3md3_A Nuclear and cytoplasmic 100.0 5.4E-34 1.8E-38 210.8 18.1 154 4-187 1-166 (166)
6 1fxl_A Paraneoplastic encephal 100.0 1.3E-33 4.6E-38 208.8 19.6 151 3-185 2-167 (167)
7 3tyt_A Heterogeneous nuclear r 100.0 9.3E-34 3.2E-38 215.5 17.9 182 2-184 3-203 (205)
8 1l3k_A Heterogeneous nuclear r 100.0 1E-33 3.6E-38 214.9 18.0 162 3-192 13-187 (196)
9 2qfj_A FBP-interacting repress 100.0 4.1E-33 1.4E-37 214.8 19.7 166 3-189 28-206 (216)
10 2yh0_A Splicing factor U2AF 65 100.0 8E-33 2.7E-37 210.4 21.0 175 2-189 3-195 (198)
11 3pgw_A U1-A; protein-RNA compl 100.0 1.8E-32 6.2E-37 219.6 23.3 184 3-186 9-281 (282)
12 2g4b_A Splicing factor U2AF 65 100.0 5.6E-33 1.9E-37 206.6 17.4 150 3-185 4-171 (172)
13 1fje_B Nucleolin RBD12, protei 100.0 1.2E-33 4.1E-38 210.8 13.5 155 3-188 13-174 (175)
14 3nmr_A Cugbp ELAV-like family 100.0 1.9E-32 6.5E-37 204.2 18.6 152 3-185 3-174 (175)
15 2cjk_A Nuclear polyadenylated 100.0 3.4E-33 1.1E-37 206.8 14.3 151 3-188 3-166 (167)
16 3sde_A Paraspeckle component 1 100.0 1.1E-31 3.8E-36 212.3 16.6 149 3-189 22-180 (261)
17 3smz_A Protein raver-1, ribonu 100.0 7.8E-31 2.7E-35 210.3 18.8 147 3-188 22-175 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 7.2E-31 2.5E-35 211.3 18.6 160 3-188 117-291 (292)
19 3smz_A Protein raver-1, ribonu 100.0 7.8E-31 2.7E-35 210.3 18.1 159 3-190 95-266 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.1E-30 7.1E-35 208.6 17.0 147 3-189 41-198 (292)
21 4f25_A Polyadenylate-binding p 99.9 2.5E-25 8.5E-30 153.6 10.1 104 2-129 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 5.8E-23 2E-27 172.5 12.4 77 112-188 101-182 (437)
23 2i2y_A Fusion protein consists 99.9 1.4E-22 4.9E-27 146.6 12.4 136 37-189 13-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 8.7E-23 3E-27 136.7 9.6 72 3-74 19-98 (99)
25 3pgw_S U1-70K; protein-RNA com 99.9 9E-22 3.1E-26 165.2 17.9 75 3-77 102-184 (437)
26 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-21 3.7E-26 143.3 14.3 136 36-190 12-152 (158)
27 2wbr_A GW182, gawky, LD47780P; 99.9 4.1E-22 1.4E-26 126.9 8.6 72 2-73 6-79 (89)
28 2dgu_A Heterogeneous nuclear r 99.9 2E-21 7E-26 131.4 11.9 77 3-79 11-87 (103)
29 2hvz_A Splicing factor, argini 99.9 7.7E-22 2.6E-26 133.1 9.0 73 4-76 1-76 (101)
30 1sjq_A Polypyrimidine tract-bi 99.9 1.4E-21 4.7E-26 130.5 8.5 77 2-78 15-95 (105)
31 2dnq_A RNA-binding protein 4B; 99.9 5.4E-21 1.8E-25 126.1 10.9 76 2-77 7-82 (90)
32 3r27_A HnRNP L, heterogeneous 99.9 4.7E-21 1.6E-25 126.7 10.1 74 2-75 20-97 (100)
33 2dgt_A RNA-binding protein 30; 99.9 7.3E-21 2.5E-25 126.0 11.2 76 2-77 9-84 (92)
34 2xnq_A Nuclear polyadenylated 99.8 6.5E-21 2.2E-25 127.2 10.5 74 2-75 21-95 (97)
35 4a8x_A RNA-binding protein wit 99.8 1E-20 3.6E-25 124.2 10.7 75 1-75 2-85 (88)
36 2lkz_A RNA-binding protein 5; 99.8 2.7E-21 9.1E-26 128.0 7.7 73 2-74 8-94 (95)
37 1x4d_A Matrin 3; structural ge 99.8 4.2E-21 1.4E-25 128.3 8.1 75 2-76 14-93 (102)
38 3lqv_A PRE-mRNA branch site pr 99.8 2.6E-21 9E-26 133.6 7.4 98 2-139 7-109 (115)
39 2dnp_A RNA-binding protein 14; 99.8 9E-21 3.1E-25 125.0 9.5 74 2-75 8-81 (90)
40 2kvi_A Nuclear polyadenylated 99.8 7.2E-21 2.5E-25 126.9 9.0 76 2-77 9-85 (96)
41 2ad9_A Polypyrimidine tract-bi 99.8 1.3E-20 4.5E-25 129.0 10.4 77 3-79 31-111 (119)
42 2lxi_A RNA-binding protein 10; 99.8 2.2E-21 7.5E-26 127.9 6.4 75 3-77 1-85 (91)
43 2cq1_A PTB-like protein L; RRM 99.8 1.9E-20 6.4E-25 125.2 10.7 77 3-79 15-95 (101)
44 1wex_A Hypothetical protein (r 99.8 2.4E-20 8.2E-25 125.5 10.9 76 3-78 15-94 (104)
45 1wf1_A RNA-binding protein RAL 99.8 1.7E-20 5.8E-25 128.4 10.1 74 3-76 27-101 (110)
46 2cpd_A Apobec-1 stimulating pr 99.8 3.1E-20 1.1E-24 124.6 11.2 74 3-76 15-90 (99)
47 3md1_A Nuclear and cytoplasmic 99.8 2E-20 7E-25 121.4 10.0 73 3-75 1-81 (83)
48 3s8s_A Histone-lysine N-methyl 99.8 1.7E-20 5.8E-25 127.9 9.9 75 2-76 5-87 (110)
49 2jvo_A Nucleolar protein 3; nu 99.8 1.5E-20 5.2E-25 127.9 9.6 74 2-75 30-103 (108)
50 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-20 6.4E-25 124.9 9.8 73 3-75 9-90 (96)
51 1x4c_A Splicing factor, argini 99.8 4.7E-20 1.6E-24 125.7 11.8 75 3-77 15-95 (108)
52 2cq3_A RNA-binding protein 9; 99.8 4.8E-20 1.7E-24 124.7 11.5 76 3-78 15-96 (103)
53 2dgo_A Cytotoxic granule-assoc 99.8 5.9E-20 2E-24 126.8 12.1 76 3-78 15-98 (115)
54 2d9p_A Polyadenylate-binding p 99.8 3.1E-20 1.1E-24 125.6 10.0 76 2-77 14-95 (103)
55 1whw_A Hypothetical protein ri 99.8 7.2E-20 2.5E-24 122.9 11.5 76 2-77 7-90 (99)
56 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.9E-20 1.4E-24 120.6 9.9 71 3-73 7-85 (85)
57 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.8E-20 2E-24 124.2 11.1 75 3-77 15-95 (103)
58 2do0_A HnRNP M, heterogeneous 99.8 9.4E-20 3.2E-24 125.6 12.2 74 3-76 15-95 (114)
59 1x4f_A Matrin 3; structural ge 99.8 1.2E-20 4.3E-25 127.7 7.4 77 2-78 24-105 (112)
60 2jvr_A Nucleolar protein 3; RN 99.8 1.9E-20 6.5E-25 127.2 8.3 73 3-75 28-105 (111)
61 2dnm_A SRP46 splicing factor; 99.8 5.3E-20 1.8E-24 124.5 10.4 75 3-77 13-95 (103)
62 2dnz_A Probable RNA-binding pr 99.8 9.2E-20 3.2E-24 121.4 11.1 75 2-76 4-86 (95)
63 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.3E-20 1.5E-24 121.0 9.3 73 3-75 6-86 (87)
64 1why_A Hypothetical protein ri 99.8 6.4E-20 2.2E-24 122.6 10.2 74 2-75 16-93 (97)
65 1x4a_A Splicing factor, argini 99.8 8.1E-20 2.8E-24 124.8 10.9 74 3-76 22-100 (109)
66 1whx_A Hypothetical protein ri 99.8 4.3E-20 1.5E-24 126.4 9.3 73 3-75 10-84 (111)
67 2do4_A Squamous cell carcinoma 99.8 8E-20 2.7E-24 122.9 10.4 75 2-76 16-97 (100)
68 2fy1_A RNA-binding motif prote 99.8 1.1E-19 3.7E-24 125.3 11.3 75 3-77 7-88 (116)
69 2x1f_A MRNA 3'-END-processing 99.8 8.5E-20 2.9E-24 121.8 10.4 76 3-78 2-85 (96)
70 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.6E-20 1.6E-24 124.6 9.1 75 3-77 12-94 (102)
71 2cqh_A IGF-II mRNA-binding pro 99.8 4.2E-20 1.4E-24 122.5 8.6 75 2-76 7-84 (93)
72 1x5u_A Splicing factor 3B subu 99.8 1E-19 3.5E-24 123.5 10.6 75 3-77 15-97 (105)
73 2cpf_A RNA binding motif prote 99.8 9.2E-20 3.1E-24 122.1 10.1 76 2-77 4-90 (98)
74 1x5t_A Splicing factor 3B subu 99.8 5.6E-20 1.9E-24 122.7 9.0 76 2-77 4-88 (96)
75 2cqd_A RNA-binding region cont 99.8 1.5E-19 5E-24 125.0 11.4 73 3-76 17-97 (116)
76 2dgs_A DAZ-associated protein 99.8 1.5E-19 5E-24 121.4 11.0 74 3-77 10-91 (99)
77 1x5s_A Cold-inducible RNA-bind 99.8 7.3E-20 2.5E-24 123.5 9.6 75 3-77 12-94 (102)
78 2cpj_A Non-POU domain-containi 99.8 1E-19 3.5E-24 122.1 10.1 74 3-76 15-90 (99)
79 3beg_B Splicing factor, argini 99.8 8.3E-20 2.9E-24 125.8 9.5 75 111-187 14-93 (115)
80 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-19 4.3E-24 123.1 10.1 75 3-77 15-99 (105)
81 1x4g_A Nucleolysin TIAR; struc 99.8 1.4E-19 5E-24 123.5 10.4 74 3-76 25-100 (109)
82 2e5h_A Zinc finger CCHC-type a 99.8 9E-20 3.1E-24 121.2 9.1 71 3-73 16-94 (94)
83 1p27_B RNA-binding protein 8A; 99.8 1E-19 3.5E-24 123.7 9.6 73 3-75 23-103 (106)
84 2cpz_A CUG triplet repeat RNA- 99.8 9.5E-20 3.3E-24 125.7 9.4 75 3-77 25-107 (115)
85 2cq0_A Eukaryotic translation 99.8 7.3E-20 2.5E-24 123.8 8.6 74 3-76 15-96 (103)
86 2err_A Ataxin-2-binding protei 99.8 8.5E-20 2.9E-24 124.5 8.9 73 3-75 29-107 (109)
87 3ex7_B RNA-binding protein 8A; 99.8 1.1E-19 3.8E-24 127.5 9.7 76 3-78 22-105 (126)
88 3ns6_A Eukaryotic translation 99.8 4.3E-20 1.5E-24 124.0 7.3 73 3-75 6-93 (100)
89 2cqc_A Arginine/serine-rich sp 99.8 1.2E-19 4.1E-24 120.9 9.3 72 3-74 15-94 (95)
90 3ulh_A THO complex subunit 4; 99.8 1.4E-19 4.7E-24 123.3 9.6 71 3-73 29-106 (107)
91 2ywk_A Putative RNA-binding pr 99.8 1.4E-19 5E-24 120.5 9.4 71 3-73 16-93 (95)
92 1x4c_A Splicing factor, argini 99.8 1E-18 3.5E-23 119.0 13.8 77 110-188 12-93 (108)
93 1s79_A Lupus LA protein; RRM, 99.8 8.9E-20 3E-24 122.7 8.3 73 2-75 10-89 (103)
94 2la4_A Nuclear and cytoplasmic 99.8 6.3E-20 2.1E-24 123.6 7.5 72 3-74 27-100 (101)
95 1oo0_B CG8781-PA, drosophila Y 99.8 1.8E-19 6.2E-24 123.3 9.8 73 3-75 26-106 (110)
96 2nlw_A Eukaryotic translation 99.8 1.3E-19 4.5E-24 122.8 9.0 73 3-75 15-100 (105)
97 2ytc_A PRE-mRNA-splicing facto 99.8 1.4E-19 4.8E-24 117.9 8.8 71 3-73 12-85 (85)
98 1x4h_A RNA-binding protein 28; 99.8 2.9E-19 1E-23 122.5 10.8 75 3-77 15-103 (111)
99 2dgv_A HnRNP M, heterogeneous 99.8 1.8E-19 6E-24 119.3 9.2 74 3-76 8-87 (92)
100 2e5j_A Methenyltetrahydrofolat 99.8 1.3E-19 4.5E-24 121.1 8.7 72 3-75 19-94 (97)
101 3p5t_L Cleavage and polyadenyl 99.8 2.8E-20 9.6E-25 122.5 5.3 72 4-75 2-83 (90)
102 2jrs_A RNA-binding protein 39; 99.8 1.6E-19 5.6E-24 122.8 9.2 73 3-75 26-106 (108)
103 2a3j_A U1 small nuclear ribonu 99.8 1.5E-19 5.1E-24 126.0 9.0 75 3-77 29-112 (127)
104 2la6_A RNA-binding protein FUS 99.8 1.8E-19 6.3E-24 120.9 9.0 71 3-73 13-99 (99)
105 3ucg_A Polyadenylate-binding p 99.8 2.7E-19 9.2E-24 117.7 9.4 72 3-75 6-85 (89)
106 2div_A TRNA selenocysteine ass 99.8 1.3E-19 4.4E-24 121.7 8.0 74 2-75 8-94 (99)
107 2cpi_A CCR4-NOT transcription 99.8 1.4E-19 4.9E-24 123.9 8.1 75 2-76 14-102 (111)
108 1nu4_A U1A RNA binding domain; 99.8 3.6E-19 1.2E-23 119.0 9.9 75 3-77 8-91 (97)
109 3beg_B Splicing factor, argini 99.8 2.3E-19 8E-24 123.5 9.2 72 3-74 16-93 (115)
110 2dgp_A Bruno-like 4, RNA bindi 99.8 3.1E-19 1.1E-23 121.3 9.7 75 3-77 13-98 (106)
111 2dhg_A TRNA selenocysteine ass 99.8 2.4E-19 8.1E-24 121.5 8.9 75 3-77 9-92 (104)
112 2cq2_A Hypothetical protein LO 99.8 1.7E-19 5.9E-24 122.1 8.0 76 3-78 25-109 (114)
113 2kxn_B Transformer-2 protein h 99.8 1.5E-19 5.2E-24 126.8 7.9 73 3-75 46-126 (129)
114 1p1t_A Cleavage stimulation fa 99.8 2.2E-19 7.4E-24 121.7 8.3 76 3-78 8-91 (104)
115 2cpe_A RNA-binding protein EWS 99.8 3.4E-19 1.2E-23 122.5 9.4 75 3-77 15-105 (113)
116 2diu_A KIAA0430 protein; struc 99.8 5.4E-19 1.9E-23 113.5 9.6 73 4-78 10-87 (96)
117 2cph_A RNA binding motif prote 99.8 7E-19 2.4E-23 119.8 10.8 75 3-77 15-99 (107)
118 1u6f_A Tcubp1, RNA-binding pro 99.8 7E-19 2.4E-23 125.6 11.1 76 3-78 42-125 (139)
119 2dis_A Unnamed protein product 99.8 6.4E-19 2.2E-23 120.4 10.5 76 2-77 7-94 (109)
120 3zzy_A Polypyrimidine tract-bi 99.8 5.3E-19 1.8E-23 122.4 10.0 73 4-76 29-107 (130)
121 2khc_A Testis-specific RNP-typ 99.8 2.5E-19 8.5E-24 124.2 8.1 71 3-73 40-118 (118)
122 2krb_A Eukaryotic translation 99.8 1.3E-19 4.6E-24 116.8 6.3 67 3-69 1-80 (81)
123 1wi8_A EIF-4B, eukaryotic tran 99.8 6.5E-19 2.2E-23 119.3 9.9 73 3-77 15-96 (104)
124 2dng_A Eukaryotic translation 99.8 7E-19 2.4E-23 118.9 9.6 73 3-77 15-95 (103)
125 2cq4_A RNA binding motif prote 99.8 5.9E-19 2E-23 121.5 9.3 73 3-76 25-105 (114)
126 2kt5_A RNA and export factor-b 99.8 1.1E-18 3.9E-23 121.9 10.8 73 3-75 35-114 (124)
127 3n9u_C Cleavage and polyadenyl 99.8 5E-19 1.7E-23 128.1 9.2 73 3-75 55-137 (156)
128 1sjr_A Polypyrimidine tract-bi 99.8 9.6E-19 3.3E-23 125.7 10.5 73 4-76 47-125 (164)
129 2cqp_A RNA-binding protein 12; 99.8 1.8E-19 6.3E-24 120.7 6.4 73 3-75 15-95 (98)
130 2lea_A Serine/arginine-rich sp 99.8 3.6E-19 1.2E-23 126.0 8.1 120 38-190 5-129 (135)
131 2dh8_A DAZ-associated protein 99.8 4E-19 1.4E-23 120.5 8.0 74 3-77 16-97 (105)
132 2ek1_A RNA-binding protein 12; 99.8 1.8E-19 6.2E-24 120.0 6.1 71 3-73 15-93 (95)
133 1uaw_A Mouse-musashi-1; RNP-ty 99.8 2.6E-19 8.8E-24 114.4 6.5 68 4-72 1-76 (77)
134 3s7r_A Heterogeneous nuclear r 99.8 9.8E-19 3.3E-23 114.4 9.3 69 3-72 11-87 (87)
135 1h2v_Z 20 kDa nuclear CAP bind 99.8 8.6E-19 2.9E-23 127.6 10.0 75 3-77 39-121 (156)
136 2fc9_A NCL protein; structure 99.8 6.2E-19 2.1E-23 118.7 8.6 74 3-76 15-92 (101)
137 2mss_A Protein (musashi1); RNA 99.8 2.6E-19 9E-24 113.7 6.4 67 5-72 1-75 (75)
138 1x5p_A Negative elongation fac 99.8 1.8E-18 6.1E-23 115.5 10.7 73 2-76 14-88 (97)
139 2e5i_A Heterogeneous nuclear r 99.8 1.5E-18 5.2E-23 119.7 10.3 72 5-76 27-103 (124)
140 1wg1_A KIAA1579 protein, homol 99.8 5.7E-19 2E-23 115.7 7.7 73 2-75 4-78 (88)
141 4fxv_A ELAV-like protein 1; RN 99.8 1.3E-18 4.3E-23 116.4 9.3 75 113-187 19-98 (99)
142 1wg5_A Heterogeneous nuclear r 99.8 1.3E-18 4.5E-23 117.6 9.5 73 3-76 15-95 (104)
143 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8.7E-19 3E-23 128.6 9.2 137 42-190 11-154 (165)
144 2cpx_A Hypothetical protein FL 99.8 8.2E-19 2.8E-23 121.0 8.4 75 3-77 25-107 (115)
145 2db1_A Heterogeneous nuclear r 99.8 2.2E-19 7.5E-24 124.2 5.5 73 3-76 17-99 (118)
146 2ki2_A SS-DNA binding protein 99.8 1.4E-19 4.6E-24 119.3 4.1 73 3-76 1-81 (90)
147 2rs2_A Musashi-1, RNA-binding 99.8 1.6E-18 5.6E-23 118.1 9.4 73 3-76 25-105 (109)
148 1x4e_A RNA binding motif, sing 99.8 1.5E-19 5.2E-24 117.8 4.1 71 2-72 4-82 (85)
149 2lea_A Serine/arginine-rich sp 99.8 5.5E-19 1.9E-23 125.1 7.1 74 3-76 47-128 (135)
150 2i2y_A Fusion protein consists 99.8 1.3E-18 4.3E-23 125.8 9.1 73 3-75 73-148 (150)
151 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.3E-19 1.8E-23 118.7 6.7 71 3-75 19-98 (100)
152 1fjc_A Nucleolin RBD2, protein 99.8 9.4E-19 3.2E-23 116.7 7.9 74 3-76 16-92 (96)
153 2dgw_A Probable RNA-binding pr 99.8 1.8E-18 6.1E-23 114.1 8.9 71 3-75 10-87 (91)
154 1x4b_A Heterogeneous nuclear r 99.8 1.8E-18 6.2E-23 119.4 9.3 74 3-77 27-108 (116)
155 2e5g_A U6 snRNA-specific termi 99.8 1.7E-18 5.7E-23 115.0 8.7 72 3-75 8-82 (94)
156 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.6E-18 5.4E-23 127.2 9.3 75 3-77 72-154 (165)
157 2e44_A Insulin-like growth fac 99.8 1.5E-18 5.3E-23 115.7 8.5 73 3-75 15-92 (96)
158 2jwn_A Embryonic polyadenylate 99.8 1.3E-18 4.4E-23 121.7 8.4 72 3-75 36-115 (124)
159 2cpy_A RNA-binding protein 12; 99.8 4E-19 1.4E-23 122.2 5.5 74 3-77 15-96 (114)
160 3ex7_B RNA-binding protein 8A; 99.8 4.2E-18 1.4E-22 119.4 10.8 81 111-191 20-105 (126)
161 2kn4_A Immunoglobulin G-bindin 99.8 2.6E-18 8.9E-23 125.3 10.0 74 3-76 70-151 (158)
162 2m2b_A RNA-binding protein 10; 99.8 1.2E-18 4.2E-23 122.8 7.9 74 3-77 23-110 (131)
163 1wez_A HnRNP H', FTP-3, hetero 99.8 1.1E-18 3.7E-23 117.4 7.3 73 2-76 14-93 (102)
164 2cqg_A TDP-43, TAR DNA-binding 99.8 4.8E-18 1.6E-22 114.8 10.2 73 3-77 15-95 (103)
165 1x5o_A RNA binding motif, sing 99.8 2.8E-18 9.7E-23 118.1 8.9 72 3-74 25-111 (114)
166 1x4a_A Splicing factor, argini 99.8 4.3E-17 1.5E-21 111.2 14.6 81 110-190 19-101 (109)
167 2fc8_A NCL protein; structure 99.8 3.6E-18 1.2E-22 115.2 8.9 74 3-76 15-93 (102)
168 2fy1_A RNA-binding motif prote 99.8 1.9E-17 6.5E-22 114.1 12.7 78 113-190 7-88 (116)
169 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.9E-18 9.9E-23 122.5 8.8 70 3-72 63-140 (140)
170 3q2s_C Cleavage and polyadenyl 99.8 1.9E-18 6.7E-23 133.1 8.4 73 3-75 68-150 (229)
171 1fj7_A Nucleolin RBD1, protein 99.8 5.3E-19 1.8E-23 119.0 4.6 73 3-76 17-96 (101)
172 3d2w_A TAR DNA-binding protein 99.8 5.5E-18 1.9E-22 111.0 9.1 70 2-75 10-84 (89)
173 2dnn_A RNA-binding protein 12; 99.7 3.5E-18 1.2E-22 115.8 8.3 71 3-75 16-93 (109)
174 1iqt_A AUF1, heterogeneous nuc 99.7 1.2E-18 4.2E-23 110.6 5.7 67 5-72 1-75 (75)
175 2hgl_A HNRPF protein, heteroge 99.7 1.3E-18 4.6E-23 122.5 6.3 72 3-75 44-125 (136)
176 1wel_A RNA-binding protein 12; 99.7 9.6E-19 3.3E-23 122.2 5.5 72 3-75 25-104 (124)
177 2f3j_A RNA and export factor b 99.7 3.6E-18 1.2E-22 126.3 8.7 73 3-75 88-167 (177)
178 2hzc_A Splicing factor U2AF 65 99.7 5.1E-18 1.8E-22 111.0 8.3 68 3-71 6-86 (87)
179 2dnm_A SRP46 splicing factor; 99.7 3.7E-17 1.3E-21 110.4 12.3 82 110-191 10-96 (103)
180 1whw_A Hypothetical protein ri 99.7 6.1E-17 2.1E-21 108.5 13.0 80 112-191 7-91 (99)
181 3egn_A RNA-binding protein 40; 99.7 3.4E-18 1.2E-22 122.5 7.3 74 3-76 45-131 (143)
182 2dnz_A Probable RNA-binding pr 99.7 5.3E-17 1.8E-21 107.9 12.5 80 113-192 5-89 (95)
183 2cpz_A CUG triplet repeat RNA- 99.7 4.1E-17 1.4E-21 112.4 12.3 81 111-191 23-108 (115)
184 2bz2_A Negative elongation fac 99.7 9.7E-18 3.3E-22 116.2 9.0 72 2-75 38-111 (121)
185 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-17 3.7E-22 113.6 8.9 78 111-188 26-105 (111)
186 1x5u_A Splicing factor 3B subu 99.7 9.7E-17 3.3E-21 108.7 13.7 81 111-191 13-98 (105)
187 2lmi_A GRSF-1, G-rich sequence 99.7 2E-18 6.8E-23 117.4 4.8 72 3-75 11-92 (107)
188 2dnq_A RNA-binding protein 4B; 99.7 5.9E-17 2E-21 106.5 11.8 77 112-191 7-83 (90)
189 1sjq_A Polypyrimidine tract-bi 99.7 2.4E-17 8.3E-22 110.0 10.0 77 113-190 16-94 (105)
190 2dgs_A DAZ-associated protein 99.7 9.7E-17 3.3E-21 107.5 13.0 80 111-191 8-92 (99)
191 2cph_A RNA binding motif prote 99.7 1.3E-16 4.4E-21 108.5 13.8 82 110-191 12-100 (107)
192 1wf0_A TDP-43, TAR DNA-binding 99.7 4.5E-18 1.5E-22 111.5 6.2 74 1-76 3-79 (88)
193 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.2E-16 4.1E-21 107.8 13.3 80 111-190 13-95 (103)
194 2wbr_A GW182, gawky, LD47780P; 99.7 1.4E-17 4.7E-22 106.1 8.0 72 113-185 7-78 (89)
195 2cq0_A Eukaryotic translation 99.7 5.1E-17 1.8E-21 109.7 11.3 81 111-191 13-98 (103)
196 2cq3_A RNA-binding protein 9; 99.7 1.7E-16 5.7E-21 107.1 13.7 81 111-191 13-96 (103)
197 3r27_A HnRNP L, heterogeneous 99.7 3.6E-17 1.2E-21 108.0 10.0 76 112-188 20-97 (100)
198 2dgu_A Heterogeneous nuclear r 99.7 1.4E-16 4.9E-21 107.4 13.3 77 112-191 10-86 (103)
199 2d9p_A Polyadenylate-binding p 99.7 9E-17 3.1E-21 108.5 12.3 81 112-192 14-97 (103)
200 3s8s_A Histone-lysine N-methyl 99.7 2.8E-17 9.5E-22 111.9 9.8 76 113-188 6-86 (110)
201 2hgn_A Heterogeneous nuclear r 99.7 2.3E-18 7.9E-23 121.7 4.5 73 3-77 46-125 (139)
202 1why_A Hypothetical protein ri 99.7 1.4E-16 4.8E-21 106.2 13.0 78 112-190 16-95 (97)
203 2xs2_A Deleted in azoospermia- 99.7 9.1E-18 3.1E-22 113.2 7.2 73 2-76 8-87 (102)
204 2dgo_A Cytotoxic granule-assoc 99.7 2E-16 7E-21 108.9 14.0 81 111-191 13-98 (115)
205 1wi8_A EIF-4B, eukaryotic tran 99.7 1.2E-16 4.1E-21 108.0 12.6 79 111-191 13-97 (104)
206 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.7E-17 1.9E-21 109.2 10.8 81 112-192 11-96 (102)
207 1x4d_A Matrin 3; structural ge 99.7 5.4E-17 1.8E-21 108.3 10.5 77 112-189 14-93 (102)
208 1x5s_A Cold-inducible RNA-bind 99.7 5.9E-17 2E-21 109.2 10.8 81 111-191 10-95 (102)
209 2dnh_A Bruno-like 5, RNA bindi 99.7 1.3E-16 4.3E-21 108.1 12.4 80 112-191 14-100 (105)
210 2j8a_A Histone-lysine N-methyl 99.7 1.2E-17 4.2E-22 113.4 7.2 73 2-74 1-95 (136)
211 4f25_A Polyadenylate-binding p 99.7 3E-17 1E-21 113.0 9.3 77 113-189 5-84 (115)
212 1x4h_A RNA-binding protein 28; 99.7 2.7E-16 9.1E-21 107.6 14.0 81 111-191 13-104 (111)
213 2do4_A Squamous cell carcinoma 99.7 1.4E-16 4.9E-21 106.8 12.3 79 112-190 16-98 (100)
214 1x5t_A Splicing factor 3B subu 99.7 4.5E-17 1.6E-21 108.5 9.7 80 113-192 5-90 (96)
215 2e5j_A Methenyltetrahydrofolat 99.7 1E-16 3.5E-21 106.9 11.3 79 111-189 17-95 (97)
216 2dha_A FLJ20171 protein; RRM d 99.7 5.8E-18 2E-22 117.1 5.4 72 3-75 23-105 (123)
217 2cq1_A PTB-like protein L; RRM 99.7 2.5E-16 8.5E-21 105.1 13.1 78 112-190 14-93 (101)
218 2lxi_A RNA-binding protein 10; 99.7 1.5E-17 5.3E-22 109.4 7.1 77 114-190 2-85 (91)
219 2cpd_A Apobec-1 stimulating pr 99.7 3.4E-16 1.2E-20 104.7 13.6 77 111-190 13-91 (99)
220 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.4E-17 2.5E-21 104.9 9.9 76 111-186 5-85 (85)
221 2dgx_A KIAA0430 protein; RRM d 99.7 1.5E-16 5E-21 105.9 11.6 79 112-190 8-92 (96)
222 2hgm_A HNRPF protein, heteroge 99.7 1.8E-17 6E-22 114.9 7.3 70 3-74 42-120 (126)
223 1wf1_A RNA-binding protein RAL 99.7 2.4E-16 8.2E-21 107.6 12.9 77 111-190 25-102 (110)
224 2dnp_A RNA-binding protein 14; 99.7 1.8E-16 6E-21 104.2 11.7 76 112-190 8-83 (90)
225 1u6f_A Tcubp1, RNA-binding pro 99.7 2.2E-16 7.6E-21 112.5 13.1 84 108-191 37-125 (139)
226 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.7E-17 1.6E-21 106.3 8.9 77 112-188 5-86 (87)
227 2e5h_A Zinc finger CCHC-type a 99.7 2E-16 6.9E-21 104.9 12.0 76 111-186 14-94 (94)
228 4f02_A Polyadenylate-binding p 99.7 3.8E-17 1.3E-21 125.0 9.6 74 3-76 103-182 (213)
229 2do0_A HnRNP M, heterogeneous 99.7 4.2E-16 1.4E-20 107.1 13.9 79 111-189 13-95 (114)
230 2lcw_A RNA-binding protein FUS 99.5 7.5E-19 2.6E-23 121.4 0.0 75 3-77 7-97 (116)
231 2dgv_A HnRNP M, heterogeneous 99.7 9.3E-17 3.2E-21 106.1 10.1 80 111-190 6-88 (92)
232 2dgp_A Bruno-like 4, RNA bindi 99.7 2E-16 6.8E-21 107.3 12.0 80 111-190 11-98 (106)
233 2hvz_A Splicing factor, argini 99.7 6.2E-17 2.1E-21 108.8 9.3 77 114-190 1-77 (101)
234 3u1l_A PRE-mRNA-splicing facto 99.7 2.7E-17 9.1E-22 126.1 7.9 73 3-75 134-229 (240)
235 2cpf_A RNA binding motif prote 99.7 1.2E-16 4E-21 106.9 10.1 79 113-191 5-91 (98)
236 2x1f_A MRNA 3'-END-processing 99.7 1.5E-16 5.2E-21 105.9 10.6 77 113-189 2-83 (96)
237 2cqc_A Arginine/serine-rich sp 99.7 1.5E-16 5.1E-21 105.7 10.5 77 111-187 13-94 (95)
238 2dng_A Eukaryotic translation 99.7 2.6E-16 9.1E-21 106.1 11.8 80 110-191 12-96 (103)
239 2kxn_B Transformer-2 protein h 99.7 1.2E-16 4.1E-21 112.0 10.4 79 111-189 44-127 (129)
240 2jrs_A RNA-binding protein 39; 99.7 1.3E-16 4.6E-21 108.3 10.4 81 109-189 22-107 (108)
241 2dgt_A RNA-binding protein 30; 99.7 3.1E-16 1E-20 103.5 11.7 78 111-191 8-85 (92)
242 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 4E-21 103.5 9.5 75 114-188 2-81 (83)
243 2ad9_A Polypyrimidine tract-bi 99.7 1E-16 3.5E-21 109.6 9.3 79 112-191 30-110 (119)
244 1wex_A Hypothetical protein (r 99.7 4.4E-16 1.5E-20 104.6 12.3 78 112-190 14-93 (104)
245 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-16 9E-21 107.2 11.3 78 112-190 24-101 (109)
246 2la6_A RNA-binding protein FUS 99.7 1.8E-16 6E-21 106.2 10.1 78 109-186 9-99 (99)
247 2e5i_A Heterogeneous nuclear r 99.7 7.6E-16 2.6E-20 106.2 13.4 76 113-189 25-103 (124)
248 1oo0_B CG8781-PA, drosophila Y 99.7 1.7E-16 5.9E-21 108.4 10.0 80 111-190 24-108 (110)
249 2err_A Ataxin-2-binding protei 99.7 1.2E-16 4.2E-21 108.8 9.2 78 111-188 27-107 (109)
250 2khc_A Testis-specific RNP-typ 99.7 5.1E-16 1.8E-20 107.4 12.5 78 109-186 36-118 (118)
251 2xnq_A Nuclear polyadenylated 99.7 3E-16 1E-20 104.5 10.8 76 110-188 19-95 (97)
252 2lkz_A RNA-binding protein 5; 99.7 7.7E-17 2.6E-21 106.5 7.9 75 113-187 9-94 (95)
253 1x4f_A Matrin 3; structural ge 99.7 2.2E-16 7.4E-21 106.8 10.2 80 110-190 22-104 (112)
254 2a3j_A U1 small nuclear ribonu 99.7 2.5E-16 8.7E-21 109.6 10.9 79 111-189 27-111 (127)
255 2dhg_A TRNA selenocysteine ass 99.7 2.5E-16 8.6E-21 106.4 10.7 80 111-190 7-92 (104)
256 2cpe_A RNA-binding protein EWS 99.7 4.1E-16 1.4E-20 107.0 11.8 80 112-191 14-106 (113)
257 4a8x_A RNA-binding protein wit 99.7 2.4E-16 8.2E-21 103.2 10.1 77 113-189 4-86 (88)
258 2cpx_A Hypothetical protein FL 99.7 6.3E-16 2.1E-20 106.5 12.5 81 111-191 23-108 (115)
259 2jvo_A Nucleolar protein 3; nu 99.7 1.6E-16 5.6E-21 107.8 9.3 77 110-189 28-104 (108)
260 2fc9_A NCL protein; structure 99.7 5.2E-16 1.8E-20 104.3 11.6 79 112-190 14-93 (101)
261 3md3_A Nuclear and cytoplasmic 99.7 1.4E-16 4.9E-21 116.9 9.6 71 3-73 87-165 (166)
262 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-16 5.2E-21 109.2 9.1 68 3-73 8-86 (114)
263 2cpj_A Non-POU domain-containi 99.7 6.6E-16 2.2E-20 103.4 12.0 78 112-190 14-91 (99)
264 1p27_B RNA-binding protein 8A; 99.7 2E-16 6.7E-21 107.4 9.3 78 112-189 22-104 (106)
265 2cq4_A RNA binding motif prote 99.7 2E-16 6.9E-21 108.8 9.5 76 112-188 24-104 (114)
266 1h2v_Z 20 kDa nuclear CAP bind 99.7 3E-16 1E-20 114.0 10.9 79 112-190 38-121 (156)
267 2cqh_A IGF-II mRNA-binding pro 99.7 1.4E-16 4.6E-21 105.5 8.1 77 112-190 7-85 (93)
268 3zzy_A Polypyrimidine tract-bi 99.7 2.2E-16 7.6E-21 109.3 9.4 79 111-189 26-107 (130)
269 2qfj_A FBP-interacting repress 99.7 2.2E-16 7.5E-21 121.0 10.5 73 3-75 125-205 (216)
270 2div_A TRNA selenocysteine ass 99.7 2.1E-16 7.2E-21 105.8 9.1 79 112-190 8-96 (99)
271 2g4b_A Splicing factor U2AF 65 99.7 1.6E-16 5.4E-21 117.4 9.3 70 3-72 94-171 (172)
272 2kvi_A Nuclear polyadenylated 99.7 1.5E-16 5.2E-21 105.8 8.1 76 112-190 9-85 (96)
273 2cpi_A CCR4-NOT transcription 99.7 4.4E-16 1.5E-20 106.4 10.6 78 112-189 14-102 (111)
274 2fc8_A NCL protein; structure 99.7 6.3E-16 2.2E-20 104.1 11.2 81 111-191 13-95 (102)
275 2cqd_A RNA-binding region cont 99.7 2.1E-15 7.2E-20 103.9 14.1 78 111-189 15-97 (116)
276 2ywk_A Putative RNA-binding pr 99.7 2.6E-16 9E-21 104.5 9.1 77 111-187 14-94 (95)
277 1fjc_A Nucleolin RBD2, protein 99.7 1.3E-16 4.6E-21 106.2 7.6 81 111-191 14-94 (96)
278 3ns6_A Eukaryotic translation 99.7 8.1E-17 2.8E-21 107.9 6.5 75 113-187 6-92 (100)
279 1nu4_A U1A RNA binding domain; 99.7 3.2E-16 1.1E-20 104.5 9.3 79 111-189 6-90 (97)
280 3ulh_A THO complex subunit 4; 99.7 3.8E-16 1.3E-20 106.1 9.8 78 109-186 25-106 (107)
281 2la4_A Nuclear and cytoplasmic 99.7 2.2E-16 7.7E-21 106.1 8.6 76 112-188 26-101 (101)
282 2ytc_A PRE-mRNA-splicing facto 99.7 4.8E-16 1.6E-20 101.0 9.6 75 111-186 10-85 (85)
283 2cqp_A RNA-binding protein 12; 99.7 2.5E-16 8.4E-21 105.3 8.3 77 112-188 14-95 (98)
284 3p5t_L Cleavage and polyadenyl 99.7 5.9E-17 2E-21 106.5 5.1 76 114-189 2-84 (90)
285 2kt5_A RNA and export factor-b 99.7 2.5E-15 8.7E-20 104.8 13.7 81 109-189 31-115 (124)
286 2dh8_A DAZ-associated protein 99.7 5.5E-16 1.9E-20 104.9 9.9 80 111-191 14-98 (105)
287 3lqv_A PRE-mRNA branch site pr 99.7 6.1E-16 2.1E-20 106.5 10.3 78 111-188 6-85 (115)
288 1sjr_A Polypyrimidine tract-bi 99.7 5.5E-16 1.9E-20 111.4 10.3 79 111-189 44-125 (164)
289 2yh0_A Splicing factor U2AF 65 99.7 3.7E-16 1.3E-20 118.1 9.8 73 3-75 114-194 (198)
290 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.7E-16 9.3E-21 105.4 7.9 77 110-188 16-98 (100)
291 2cjk_A Nuclear polyadenylated 99.7 1.5E-16 5.1E-21 117.0 7.3 72 3-75 87-166 (167)
292 1x5p_A Negative elongation fac 99.7 3E-15 1E-19 99.7 13.0 76 112-190 14-89 (97)
293 3ucg_A Polyadenylate-binding p 99.7 7.3E-16 2.5E-20 101.1 9.6 75 113-188 6-85 (89)
294 2nlw_A Eukaryotic translation 99.7 9.7E-16 3.3E-20 103.6 10.5 76 113-188 15-100 (105)
295 1x4b_A Heterogeneous nuclear r 99.7 6.9E-16 2.3E-20 106.4 9.8 78 113-191 27-109 (116)
296 2dgw_A Probable RNA-binding pr 99.7 8E-16 2.7E-20 101.3 9.7 78 110-189 7-88 (91)
297 1whx_A Hypothetical protein ri 99.7 6.1E-16 2.1E-20 105.6 9.4 75 113-188 10-84 (111)
298 2voo_A Lupus LA protein; RNA-b 99.7 3.4E-16 1.2E-20 117.4 8.9 73 3-76 109-188 (193)
299 1wez_A HnRNP H', FTP-3, hetero 99.7 9E-16 3.1E-20 103.0 10.1 79 111-191 13-95 (102)
300 2pe8_A Splicing factor 45; RRM 99.7 6.8E-16 2.3E-20 103.8 9.4 73 2-74 7-93 (105)
301 2m2b_A RNA-binding protein 10; 99.7 8E-16 2.7E-20 108.3 10.2 78 111-189 21-109 (131)
302 1x5o_A RNA binding motif, sing 99.6 3.3E-15 1.1E-19 102.6 12.7 79 111-189 23-113 (114)
303 2diu_A KIAA0430 protein; struc 99.6 1.4E-15 4.9E-20 97.7 10.0 73 113-190 8-86 (96)
304 1fje_B Nucleolin RBD12, protei 99.6 3.9E-16 1.3E-20 115.7 8.6 73 3-75 99-174 (175)
305 1wg5_A Heterogeneous nuclear r 99.6 1.9E-15 6.5E-20 102.0 11.2 77 111-188 13-94 (104)
306 2krb_A Eukaryotic translation 99.6 3.2E-16 1.1E-20 100.8 7.0 69 114-182 2-80 (81)
307 3nmr_A Cugbp ELAV-like family 99.6 6.3E-16 2.2E-20 114.5 9.4 71 3-73 95-175 (175)
308 2cq2_A Hypothetical protein LO 99.6 1.3E-15 4.4E-20 103.1 10.0 77 112-189 24-107 (114)
309 1l3k_A Heterogeneous nuclear r 99.6 5E-16 1.7E-20 117.2 8.9 75 3-78 104-186 (196)
310 2dis_A Unnamed protein product 99.6 2.7E-15 9.3E-20 102.2 11.7 79 112-190 7-94 (109)
311 2dit_A HIV TAT specific factor 99.6 1.2E-15 4.1E-20 104.4 9.9 73 3-75 15-102 (112)
312 2adc_A Polypyrimidine tract-bi 99.6 7.9E-16 2.7E-20 119.0 10.1 73 3-75 151-228 (229)
313 1s79_A Lupus LA protein; RRM, 99.6 7.2E-16 2.5E-20 103.5 8.5 73 113-186 11-87 (103)
314 1b7f_A Protein (SXL-lethal pro 99.6 7.3E-16 2.5E-20 113.3 9.3 70 3-72 89-168 (168)
315 2e44_A Insulin-like growth fac 99.6 2.1E-15 7.3E-20 100.3 10.7 79 110-188 12-92 (96)
316 1wel_A RNA-binding protein 12; 99.6 4.7E-16 1.6E-20 108.5 7.7 78 109-187 21-103 (124)
317 3pgw_A U1-A; protein-RNA compl 99.6 6.9E-16 2.4E-20 123.2 9.7 71 3-73 207-281 (282)
318 2rs2_A Musashi-1, RNA-binding 99.6 1.6E-15 5.6E-20 103.1 10.2 79 111-190 23-106 (109)
319 2cqg_A TDP-43, TAR DNA-binding 99.6 4.4E-15 1.5E-19 100.1 12.2 78 111-190 13-95 (103)
320 1x4e_A RNA binding motif, sing 99.6 2.8E-16 9.7E-21 102.1 6.0 74 112-185 4-82 (85)
321 2jwn_A Embryonic polyadenylate 99.6 1.2E-15 4.2E-20 106.4 9.5 77 113-190 36-117 (124)
322 3n9u_C Cleavage and polyadenyl 99.6 7.8E-16 2.7E-20 111.3 8.4 77 112-188 54-137 (156)
323 1fj7_A Nucleolin RBD1, protein 99.6 7E-16 2.4E-20 103.6 7.6 79 112-191 16-98 (101)
324 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.2E-15 2.1E-19 105.1 13.0 75 111-185 61-140 (140)
325 1qm9_A Polypyrimidine tract-bi 99.6 6.8E-16 2.3E-20 116.7 8.2 73 3-75 120-197 (198)
326 2ek1_A RNA-binding protein 12; 99.6 3.7E-16 1.3E-20 103.8 5.8 74 113-186 15-93 (95)
327 2e5g_A U6 snRNA-specific termi 99.6 5.1E-15 1.7E-19 98.0 11.2 76 113-189 8-83 (94)
328 1fxl_A Paraneoplastic encephal 99.6 1.5E-15 5.1E-20 111.5 9.2 70 3-72 88-167 (167)
329 3s7r_A Heterogeneous nuclear r 99.6 2.5E-15 8.6E-20 98.0 9.3 74 111-185 9-87 (87)
330 2hgn_A Heterogeneous nuclear r 99.6 3.4E-16 1.2E-20 110.5 5.4 77 112-190 45-125 (139)
331 1p1t_A Cleavage stimulation fa 99.6 1.2E-15 4E-20 103.1 7.9 77 113-189 8-89 (104)
332 2mss_A Protein (musashi1); RNA 99.6 1E-15 3.5E-20 97.0 7.0 70 115-185 1-75 (75)
333 3egn_A RNA-binding protein 40; 99.6 2.1E-15 7.1E-20 107.9 9.3 80 111-190 43-132 (143)
334 3d2w_A TAR DNA-binding protein 99.6 3.3E-15 1.1E-19 97.7 9.4 76 110-189 8-85 (89)
335 2db1_A Heterogeneous nuclear r 99.6 1.3E-15 4.3E-20 105.2 7.6 77 110-187 14-97 (118)
336 2dnn_A RNA-binding protein 12; 99.6 2.4E-15 8.3E-20 101.8 8.7 73 113-187 16-92 (109)
337 1wg1_A KIAA1579 protein, homol 99.6 1.9E-15 6.6E-20 98.7 7.5 74 113-188 5-78 (88)
338 2hgl_A HNRPF protein, heteroge 99.6 1.2E-15 4E-20 107.4 6.8 79 108-187 39-124 (136)
339 3tyt_A Heterogeneous nuclear r 99.6 5.2E-15 1.8E-19 112.1 10.6 76 113-188 4-80 (205)
340 2cpy_A RNA-binding protein 12; 99.6 2.5E-15 8.7E-20 103.1 7.9 76 112-188 14-94 (114)
341 2lmi_A GRSF-1, G-rich sequence 99.6 1.5E-15 5E-20 103.1 6.0 77 110-187 8-91 (107)
342 1wf0_A TDP-43, TAR DNA-binding 99.6 3.8E-15 1.3E-19 97.3 7.5 77 113-191 5-81 (88)
343 1uaw_A Mouse-musashi-1; RNP-ty 99.6 2E-15 7E-20 96.1 5.8 70 115-185 2-76 (77)
344 2ki2_A SS-DNA binding protein 99.6 8.7E-16 3E-20 100.9 4.1 75 114-189 2-81 (90)
345 3tht_A Alkylated DNA repair pr 99.6 7.3E-15 2.5E-19 118.5 10.3 71 3-73 18-97 (345)
346 2bz2_A Negative elongation fac 99.6 7.5E-15 2.6E-19 101.6 9.0 77 111-190 37-113 (121)
347 2f3j_A RNA and export factor b 99.6 7.5E-15 2.6E-19 108.5 9.4 79 109-187 84-166 (177)
348 2hzc_A Splicing factor U2AF 65 99.6 9.7E-15 3.3E-19 95.2 8.1 71 112-184 5-86 (87)
349 3q2s_C Cleavage and polyadenyl 99.6 4.4E-15 1.5E-19 114.3 7.3 76 112-187 67-149 (229)
350 3v4m_A Splicing factor U2AF 65 99.6 1E-14 3.6E-19 98.1 8.3 73 2-74 4-96 (105)
351 1iqt_A AUF1, heterogeneous nuc 99.6 4.8E-15 1.7E-19 93.8 5.5 70 115-185 1-75 (75)
352 2lcw_A RNA-binding protein FUS 99.3 3.6E-16 1.2E-20 107.8 0.0 78 113-190 7-97 (116)
353 2d9o_A DNAJ (HSP40) homolog, s 99.5 4.6E-14 1.6E-18 93.7 10.0 71 4-76 11-91 (100)
354 2hgm_A HNRPF protein, heteroge 99.5 2.4E-14 8.1E-19 99.2 8.2 74 112-187 41-120 (126)
355 1jmt_A Splicing factor U2AF 35 99.5 2.8E-15 9.4E-20 100.8 2.8 63 10-72 22-103 (104)
356 3ue2_A Poly(U)-binding-splicin 99.5 4.4E-14 1.5E-18 96.8 8.9 72 3-74 20-108 (118)
357 2dha_A FLJ20171 protein; RRM d 99.5 7.2E-15 2.5E-19 101.6 4.5 75 112-187 22-104 (123)
358 3s6e_A RNA-binding protein 39; 99.5 6.4E-14 2.2E-18 95.3 8.8 73 2-74 6-92 (114)
359 3sde_A Paraspeckle component 1 99.5 4.6E-14 1.6E-18 111.2 9.2 73 3-75 96-179 (261)
360 2xs2_A Deleted in azoospermia- 99.5 1.3E-14 4.5E-19 97.5 4.5 75 113-189 9-87 (102)
361 2dnl_A Cytoplasmic polyadenyla 99.5 2.9E-13 9.8E-18 92.8 11.0 69 113-184 8-84 (114)
362 2pe8_A Splicing factor 45; RRM 99.5 3.3E-13 1.1E-17 90.6 9.8 75 113-187 8-93 (105)
363 3u1l_A PRE-mRNA-splicing facto 99.5 1.2E-13 4.2E-18 105.8 8.5 78 111-189 132-230 (240)
364 2dit_A HIV TAT specific factor 99.5 9.4E-13 3.2E-17 89.9 12.0 78 112-189 14-103 (112)
365 2j8a_A Histone-lysine N-methyl 99.5 8.5E-14 2.9E-18 94.6 6.2 74 114-187 3-95 (136)
366 2voo_A Lupus LA protein; RNA-b 99.4 1.6E-12 5.4E-17 97.4 11.8 74 113-187 109-186 (193)
367 1owx_A Lupus LA protein, SS-B, 99.4 7.6E-13 2.6E-17 90.0 8.9 73 2-74 17-95 (121)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 3E-12 1E-16 84.9 9.7 66 123-190 27-92 (100)
369 3v4m_A Splicing factor U2AF 65 99.4 3.3E-12 1.1E-16 85.8 8.7 74 113-186 5-95 (105)
370 2dnr_A Synaptojanin-1; RRM dom 99.4 3.3E-12 1.1E-16 81.3 7.9 72 3-75 7-86 (91)
371 3tht_A Alkylated DNA repair pr 99.3 9.1E-12 3.1E-16 100.5 10.2 75 110-185 15-96 (345)
372 3s6e_A RNA-binding protein 39; 99.3 1.2E-11 4.3E-16 84.0 9.3 76 111-186 5-91 (114)
373 3ue2_A Poly(U)-binding-splicin 99.3 8.3E-12 2.8E-16 85.4 7.8 74 113-186 20-107 (118)
374 1jmt_A Splicing factor U2AF 35 99.3 1.6E-12 5.4E-17 87.2 3.2 68 118-185 20-103 (104)
375 1ufw_A Synaptojanin 2; RNP dom 99.2 3.7E-11 1.3E-15 76.8 6.0 70 3-73 15-93 (95)
376 1owx_A Lupus LA protein, SS-B, 99.2 2.3E-10 7.9E-15 77.8 9.9 73 110-183 15-91 (121)
377 2dnr_A Synaptojanin-1; RRM dom 99.2 1.7E-10 6E-15 73.4 8.4 72 113-188 7-86 (91)
378 3dxb_A Thioredoxin N-terminall 99.0 2.3E-09 7.9E-14 82.2 9.1 61 14-74 140-212 (222)
379 1ufw_A Synaptojanin 2; RNP dom 99.0 9.1E-10 3.1E-14 70.4 5.3 70 113-186 15-93 (95)
380 2dhx_A Poly (ADP-ribose) polym 98.8 4.3E-08 1.5E-12 63.4 10.0 71 3-74 8-83 (104)
381 2l9w_A U4/U6 snRNA-associated- 98.8 5E-08 1.7E-12 63.6 8.4 71 3-73 21-98 (117)
382 3dxb_A Thioredoxin N-terminall 98.6 8E-08 2.7E-12 73.5 7.1 62 125-186 141-211 (222)
383 2l9w_A U4/U6 snRNA-associated- 98.6 3.6E-07 1.2E-11 59.6 8.0 70 113-183 21-95 (117)
384 1wey_A Calcipressin 1; structu 98.5 8.4E-07 2.9E-11 57.7 8.2 74 2-75 4-84 (104)
385 1uw4_A UPF3X; nonsense mediate 98.4 1.7E-06 5.7E-11 55.4 7.2 62 3-64 1-72 (91)
386 1whv_A Poly(A)-specific ribonu 98.1 1.2E-05 4.1E-10 51.4 6.7 53 5-58 18-70 (100)
387 1wwh_A Nucleoporin 35, nucleop 98.1 3E-05 1E-09 51.9 8.5 70 3-74 24-96 (119)
388 3ctr_A Poly(A)-specific ribonu 98.0 1.1E-05 3.9E-10 51.7 5.7 53 5-58 8-60 (101)
389 2dhx_A Poly (ADP-ribose) polym 98.0 0.00013 4.3E-09 47.3 10.2 74 113-190 8-86 (104)
390 1wey_A Calcipressin 1; structu 97.9 4.6E-05 1.6E-09 49.6 6.4 75 113-188 5-84 (104)
391 2l08_A Regulator of nonsense t 97.8 3.1E-05 1.1E-09 49.8 4.9 61 4-64 10-80 (97)
392 1whv_A Poly(A)-specific ribonu 97.6 0.00043 1.5E-08 44.3 8.1 55 112-170 15-69 (100)
393 3p3d_A Nucleoporin 53; structu 97.4 0.00033 1.1E-08 47.5 5.6 71 3-75 7-99 (132)
394 1uw4_A UPF3X; nonsense mediate 97.3 0.0012 4.3E-08 42.1 7.0 63 115-177 3-72 (91)
395 1wwh_A Nucleoporin 35, nucleop 97.3 0.0019 6.6E-08 43.2 8.0 70 113-185 24-94 (119)
396 3ctr_A Poly(A)-specific ribonu 97.2 0.00053 1.8E-08 44.0 4.5 54 114-171 7-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 96.9 0.00053 1.8E-08 57.4 3.3 50 4-54 54-106 (464)
398 3p3d_A Nucleoporin 53; structu 96.8 0.0017 5.7E-08 44.1 4.7 72 113-186 7-97 (132)
399 2l08_A Regulator of nonsense t 96.3 0.0074 2.5E-07 38.8 5.0 65 113-177 9-80 (97)
400 3pq1_A Poly(A) RNA polymerase; 95.9 0.0038 1.3E-07 52.3 2.8 54 114-168 54-107 (464)
401 3d45_A Poly(A)-specific ribonu 95.8 0.027 9.2E-07 48.1 7.5 55 4-59 441-495 (507)
402 2g0c_A ATP-dependent RNA helic 95.1 0.14 4.6E-06 31.3 7.3 69 4-73 1-75 (76)
403 4eyt_A Telomerase associated p 93.9 0.66 2.3E-05 28.8 8.6 66 3-70 12-77 (129)
404 3d45_A Poly(A)-specific ribonu 90.5 1.3 4.5E-05 37.8 8.7 55 113-171 440-494 (507)
405 3fry_A Probable copper-exporti 76.7 6 0.00021 23.1 5.0 55 1-56 4-60 (73)
406 4e8u_A Putative uncharacterize 75.9 6.3 0.00022 28.1 5.4 51 4-54 13-80 (172)
407 3ts2_A Protein LIN-28 homolog 73.6 0.56 1.9E-05 32.8 -0.4 29 17-45 1-29 (148)
408 2e5p_A Protein PHF1, PHD finge 71.2 2.6 8.8E-05 24.5 2.0 20 28-47 28-47 (68)
409 4eyt_A Telomerase associated p 70.1 17 0.00057 22.6 8.3 58 112-172 11-68 (129)
410 2m0o_A PHD finger protein 1; t 68.6 3.1 0.00011 25.0 2.0 20 28-47 45-64 (79)
411 3dxs_X Copper-transporting ATP 67.6 15 0.00052 21.2 6.3 56 1-56 1-62 (74)
412 2eqj_A Metal-response element- 65.2 4 0.00014 23.8 2.0 20 28-47 32-51 (66)
413 3lpe_A Putative transcription 62.4 21 0.00073 22.3 5.3 31 29-59 39-72 (92)
414 2e5q_A PHD finger protein 19; 61.0 1.7 5.9E-05 24.9 -0.0 20 28-47 26-45 (63)
415 4hcz_A PHD finger protein 1; p 58.4 6.5 0.00022 22.2 2.0 21 28-48 22-42 (58)
416 2od0_A Hypothetical protein VP 52.0 14 0.00048 23.7 3.3 27 15-41 4-30 (105)
417 2cu1_A Mitogen-activated prote 46.7 21 0.00071 22.7 3.2 63 10-73 23-86 (103)
418 2f06_A Conserved hypothetical 46.6 64 0.0022 21.7 12.2 48 127-175 86-135 (144)
419 1y3j_A Copper-transporting ATP 46.5 40 0.0014 19.3 5.1 57 1-57 2-64 (77)
420 2rf4_B DNA-directed RNA polyme 46.2 12 0.0004 23.1 1.9 25 3-27 19-43 (87)
421 4e8u_A Putative uncharacterize 45.6 34 0.0012 24.3 4.5 45 115-159 14-71 (172)
422 3fut_A Dimethyladenosine trans 45.1 18 0.0006 28.0 3.4 46 5-60 112-157 (271)
423 4bby_A Alkyldihydroxyacetoneph 45.0 20 0.00069 31.7 4.1 50 10-59 350-410 (658)
424 1mwy_A ZNTA; open-faced beta-s 44.8 41 0.0014 18.9 7.7 46 1-46 2-49 (73)
425 2xk0_A Polycomb protein PCL; t 43.0 13 0.00046 21.7 1.8 19 28-48 34-52 (69)
426 2qif_A Copper chaperone COPZ; 42.5 41 0.0014 18.2 6.3 46 1-46 1-48 (69)
427 2l3m_A Copper-ION-binding prot 42.1 44 0.0015 18.5 5.4 45 2-46 5-51 (71)
428 3h7h_B Transcription elongatio 41.7 25 0.00087 22.7 3.2 32 29-60 40-74 (106)
429 3uzu_A Ribosomal RNA small sub 41.1 8.5 0.00029 29.9 1.0 43 4-54 115-157 (279)
430 1i4w_A Mitochondrial replicati 39.6 21 0.00072 28.8 3.1 22 5-26 144-165 (353)
431 2jrh_A Mitogen-activated prote 38.3 71 0.0024 19.8 4.6 63 10-73 19-82 (94)
432 2d8m_A DNA-repair protein XRCC 37.8 41 0.0014 22.4 3.9 45 2-47 24-68 (129)
433 2npt_B Mitogen-activated prote 36.6 79 0.0027 19.9 4.7 50 10-59 35-85 (100)
434 1jww_A Potential copper-transp 35.8 62 0.0021 18.4 4.9 46 1-46 2-49 (80)
435 1qyr_A KSGA, high level kasuga 35.7 30 0.001 26.3 3.3 26 5-30 92-117 (252)
436 2c60_A Human mitogen-activated 34.8 75 0.0026 20.3 4.3 49 11-59 47-96 (111)
437 1ytr_A Bacteriocin plantaricin 34.2 25 0.00087 15.4 1.5 13 16-28 13-25 (26)
438 1yg0_A COP associated protein; 34.2 57 0.002 17.5 6.1 54 3-56 2-60 (66)
439 2k5n_A Putative cold-shock pro 33.8 25 0.00084 21.1 2.0 20 27-46 4-23 (74)
440 3ftd_A Dimethyladenosine trans 33.3 27 0.00091 26.5 2.7 26 5-30 97-122 (249)
441 2ofg_X Zinc-transporting ATPas 32.9 94 0.0032 19.6 7.0 45 2-46 8-54 (111)
442 3tqs_A Ribosomal RNA small sub 32.8 13 0.00045 28.4 0.9 28 5-32 98-125 (255)
443 3a0j_A Cold shock protein; OB- 32.0 22 0.00074 21.2 1.6 20 27-46 3-22 (73)
444 1g6p_A Cold shock protein TMCS 31.8 22 0.00076 20.6 1.6 19 28-46 3-21 (66)
445 2kcm_A Cold shock domain famil 31.0 29 0.001 20.7 2.0 20 28-47 3-22 (74)
446 3swz_A Steroid 17-alpha-hydrox 30.3 63 0.0022 26.8 4.8 58 6-65 17-78 (494)
447 4a4j_A Pacszia, cation-transpo 30.2 74 0.0025 17.6 5.8 46 4-49 4-51 (69)
448 2hiq_A Hypothetical protein YD 30.0 1.1E+02 0.0039 19.9 4.8 54 1-54 6-73 (113)
449 2cs4_A Protein C12ORF2; GTP bi 29.1 30 0.001 21.8 1.9 25 8-32 21-46 (95)
450 1c9o_A CSPB, cold-shock protei 28.9 34 0.0012 19.8 2.0 20 27-46 3-22 (66)
451 3aqq_A Calcium-regulated heat 28.2 31 0.0011 23.8 2.0 20 27-46 64-83 (147)
452 1eij_A Hypothetical protein MT 28.2 39 0.0013 20.6 2.2 20 9-28 50-69 (80)
453 3cam_A Cold-shock domain famil 28.1 36 0.0012 19.8 2.0 19 28-46 4-22 (67)
454 2exu_A Transcription initiatio 27.9 40 0.0014 24.7 2.6 31 30-60 139-172 (200)
455 1h95_A CSD, Y-box binding prot 27.6 28 0.00097 21.0 1.6 19 28-46 11-29 (79)
456 2kt2_A Mercuric reductase; nme 27.5 81 0.0028 17.2 6.1 44 4-47 2-47 (69)
457 1ik9_C DNA ligase IV; DNA END 27.5 48 0.0016 16.7 2.2 15 13-27 20-34 (37)
458 1wvf_A 4-cresol dehydrogenase 25.7 64 0.0022 27.4 4.0 37 19-55 217-262 (520)
459 2gqc_A Rhomboid intramembrane 25.4 1.1E+02 0.0037 17.9 4.8 53 7-59 5-57 (70)
460 3iwl_A Copper transport protei 25.3 95 0.0033 17.3 5.2 53 1-55 1-56 (68)
461 2kyz_A Heavy metal binding pro 25.2 72 0.0025 17.5 3.1 43 4-47 3-47 (67)
462 4hhu_A OR280; engineered prote 24.9 1.5E+02 0.0051 19.4 5.2 58 114-171 43-105 (170)
463 3l3e_A DNA topoisomerase 2-bin 24.9 64 0.0022 20.5 3.1 42 2-44 17-58 (107)
464 1fme_A FSD-EY peptide; beta-BE 24.7 45 0.0015 14.9 1.5 12 16-27 14-25 (28)
465 2gu3_A YPMB protein; APC1927, 24.6 81 0.0028 21.3 3.6 40 8-47 68-128 (136)
466 3tbg_A Cytochrome P450 2D6; mo 24.5 42 0.0014 27.6 2.7 47 7-54 20-69 (479)
467 2lsl_A Telomerase associated p 30.1 16 0.00055 22.9 0.0 23 37-59 77-99 (137)
468 3i2z_B RNA chaperone, negative 24.0 46 0.0016 19.5 2.0 20 27-46 7-26 (71)
469 2kpo_A Rossmann 2X2 fold prote 23.9 85 0.0029 18.8 3.1 48 14-66 32-80 (110)
470 2nn4_A Hypothetical protein YQ 23.9 32 0.0011 20.5 1.2 15 16-30 4-18 (72)
471 3pc6_A DNA repair protein XRCC 23.5 72 0.0025 20.4 3.0 28 2-29 9-36 (104)
472 1cqm_A Ribosomal protein S6; a 23.0 1.5E+02 0.0051 18.7 4.6 55 12-68 11-87 (101)
473 1opz_A Potential copper-transp 22.8 1.1E+02 0.0036 16.9 7.6 45 2-46 6-52 (76)
474 2fh0_A Hypothetical 16.0 kDa p 22.8 51 0.0017 20.1 2.0 19 9-27 48-66 (81)
475 3pm9_A Putative oxidoreductase 22.1 1.2E+02 0.004 25.6 4.8 48 11-58 194-252 (476)
476 2kkh_A Putative heavy metal tr 21.7 1.4E+02 0.0048 17.9 8.2 46 1-46 15-62 (95)
477 4id3_A DNA repair protein REV1 21.7 1E+02 0.0035 18.5 3.5 45 2-47 9-55 (92)
478 2yh5_A DAPX protein, BAMC; lip 21.5 61 0.0021 21.7 2.4 52 4-57 14-66 (127)
479 2g9o_A Copper-transporting ATP 21.1 1.4E+02 0.0049 17.7 5.1 54 4-57 5-64 (90)
480 3ulj_A LIN28B, DNA-binding pro 20.7 46 0.0016 20.8 1.6 17 28-44 11-27 (90)
481 2w7a_A LINE-1 ORF1P; RNA-bindi 20.6 1.7E+02 0.0059 18.6 4.6 67 4-70 4-98 (100)
482 2uwq_A Apoptosis-stimulating o 20.4 57 0.0019 20.2 1.9 20 10-29 24-43 (86)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=2e-35 Score=227.00 Aligned_cols=156 Identities=21% Similarity=0.318 Sum_probs=140.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
++||||+|||+++|+++|+++|+.||+|..|.|. +|||||+|.+.++|+.||+.|++..+.|+.|.+.++..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~ 94 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 94 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccc
Confidence 5799999999999999999999999999999983 68999999999999999999999999999999998865
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc---cCCCc
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH---KRHRN 151 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~---~~~~~ 151 (262)
...... ....+|||+|||..+++++|.++|+.||.|..+.+. +..+|
T Consensus 95 ~~~~~~------------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g 144 (213)
T 4f02_A 95 DPSLRK------------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKG 144 (213)
T ss_dssp CTHHHH------------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEE
T ss_pred cccccc------------------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCce
Confidence 432221 113489999999999999999999999999999886 33578
Q ss_pred eEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 152 EGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 152 ~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+|||+|.+.++|.+|++.|||..|+|+.|.|.++.++
T Consensus 145 ~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 145 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 9999999999999999999999999999999998765
No 2
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.3e-34 Score=220.26 Aligned_cols=187 Identities=21% Similarity=0.256 Sum_probs=148.7
Q ss_pred CccceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 1 MVGTKVYIGGLPY-GVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 1 ~~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
|.+++|||+|||+ .+|+++|+++|+.||.|..|.+. +|||||+|.++++|+.|+..|+|..|.|+.|.|.++....
T Consensus 1 m~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 1 MGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 6789999999999 99999999999999999999995 7999999999999999999999999999999999998653
Q ss_pred cccccCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCC-ceEEEecccCCCc
Q psy10320 77 RSQERGRRGY----GSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAHKRHRN 151 (262)
Q Consensus 77 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~ 151 (262)
.......... ......+..... ............+..+|||+|||..+++++|.++|+.|| .|..+.+....+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFK-KPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSS-SCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSS
T ss_pred cCCCCcCCccccccccccCCchhhcc-CccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCc
Confidence 2221111000 000000000100 000111111223467999999999999999999999999 9999999777789
Q ss_pred eEEEEecCHHHHHHHHHHhCCcccC-CceEEEeecCCC
Q psy10320 152 EGVVEFESSSDMKKALDKLDNAELN-GRRIRLIEDKPR 188 (262)
Q Consensus 152 ~~~v~f~~~~~a~~a~~~l~g~~~~-g~~~~v~~~~~~ 188 (262)
+|||+|.+.++|..|+..|+|..++ |+.|.|.++++.
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999999999999999999999999 999999998753
No 3
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=8.8e-34 Score=220.20 Aligned_cols=185 Identities=21% Similarity=0.255 Sum_probs=146.1
Q ss_pred cceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLPY-GVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 78 (262)
+++|||+|||+ .+|+++|+++|+.||.|..|.|. +|||||+|.++++|+.|++.|+|..|.|+.|.|.++......
T Consensus 34 ~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 113 (229)
T 2adc_A 34 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQ 113 (229)
T ss_dssp CSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCC
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcccc
Confidence 57999999999 99999999999999999999996 799999999999999999999999999999999999765322
Q ss_pred cccCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCC-ceEEEecccCCCceE
Q psy10320 79 QERGRRG----YGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAHKRHRNEG 153 (262)
Q Consensus 79 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~~~ 153 (262)
....... .......+....... ..........+..+|||+|||..+++++|+++|+.|| .|..+.+....+++|
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~a 192 (229)
T 2adc_A 114 LPREGQEDQGLTKDYGNSPLHRFKKP-GSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMA 192 (229)
T ss_dssp CCCSSSSTTTTEEECTTCSSCCCCST-TSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCE
T ss_pred CccccccccccccccccCcccccCCc-cccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEE
Confidence 1110000 000000000000000 0000111123467999999999999999999999999 999999977778999
Q ss_pred EEEecCHHHHHHHHHHhCCcccC-CceEEEeecCCC
Q psy10320 154 VVEFESSSDMKKALDKLDNAELN-GRRIRLIEDKPR 188 (262)
Q Consensus 154 ~v~f~~~~~a~~a~~~l~g~~~~-g~~~~v~~~~~~ 188 (262)
||+|.+.++|.+|+..|+|..+. |+.|.|.++++.
T Consensus 193 fV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 193 LIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp EEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 99999999999999999999999 999999998753
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=8.4e-34 Score=210.19 Aligned_cols=152 Identities=22% Similarity=0.382 Sum_probs=136.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
..++|||+|||+.+|+++|+++|+.||+|..|.+. +|||||+|.++++|+.|++.|+|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999983 5899999999999999999999999999999999987
Q ss_pred CCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----C
Q psy10320 74 GIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----R 148 (262)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~ 148 (262)
+... .....+|||+|||..+++++|.++|+.||.|..+.+.. .
T Consensus 82 ~~~~--------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 129 (168)
T 1b7f_A 82 PGGE--------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR 129 (168)
T ss_dssp CCSS--------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCC
T ss_pred CCcc--------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCC
Confidence 5321 11256999999999999999999999999999988763 3
Q ss_pred CCceEEEEecCHHHHHHHHHHhCCcccCC--ceEEEeec
Q psy10320 149 HRNEGVVEFESSSDMKKALDKLDNAELNG--RRIRLIED 185 (262)
Q Consensus 149 ~~~~~~v~f~~~~~a~~a~~~l~g~~~~g--~~~~v~~~ 185 (262)
++|+|||+|.+.++|.+|+..|+|..+.| +.|.|.++
T Consensus 130 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 130 PRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 46899999999999999999999999988 88998764
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-34 Score=210.76 Aligned_cols=154 Identities=25% Similarity=0.396 Sum_probs=138.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.+|||+|||+++|+++|+++|+.||+|..|.+. +|||||+|.+.++|..|++.|+|..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 489999999999999999999999999999983 6899999999999999999999999999999999986532
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCc
Q psy10320 77 RSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRN 151 (262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~ 151 (262)
.. ......+|||+|||..+++++|.++|+.||.|..+.+. +.++|
T Consensus 81 ~~------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 130 (166)
T 3md3_A 81 QS------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRG 130 (166)
T ss_dssp CC------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEE
T ss_pred CC------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcce
Confidence 11 12235699999999999999999999999999999886 34578
Q ss_pred eEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 152 EGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 152 ~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
+|||+|.+.++|.+|+..|||..++|+.|.|.++.+
T Consensus 131 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 131 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999999998753
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.3e-33 Score=208.82 Aligned_cols=151 Identities=23% Similarity=0.395 Sum_probs=135.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.++++|+.|++.|+|..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5899999999999999999999999999999983 38999999999999999999999999999999999875
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~ 149 (262)
.... ....+|||+|||..+++++|.++|+.||.|..+.+.. .+
T Consensus 82 ~~~~--------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 129 (167)
T 1fxl_A 82 SSAS--------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 129 (167)
T ss_dssp CCGG--------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred Cccc--------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCc
Confidence 4221 1245899999999999999999999999999998863 34
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCCce--EEEeec
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNGRR--IRLIED 185 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~--~~v~~~ 185 (262)
+|+|||+|.+.++|.+|+..|||..+.|+. |.|.++
T Consensus 130 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 130 RGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred cceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 789999999999999999999999999975 777654
No 7
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=9.3e-34 Score=215.53 Aligned_cols=182 Identities=17% Similarity=0.193 Sum_probs=136.7
Q ss_pred ccceEEEcCCC-CCCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 2 VGTKVYIGGLP-YGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 2 ~~~~l~V~nl~-~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
.+++|||+||| +.+|+++|+++|+.||.|.+|.|. +|||||+|.++++|+.||+.|||..|.|+.|.|.+++....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 46899999999 799999999999999999999984 69999999999999999999999999999999999975432
Q ss_pred ccccC-CCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCce--EEEeccc--
Q psy10320 78 SQERG-RRGYGS-----YRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEV--CYADAHK-- 147 (262)
Q Consensus 78 ~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i--~~~~~~~-- 147 (262)
..... ....+. ....+...+... ..........+..+|||+|||..+++++|+++|++||.| ..+.+..
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTP-EQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSH-HHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred CCCcccccccCCccccccCCCccccccCc-ccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 11000 000000 000000000000 000000112336789999999999999999999999998 7777663
Q ss_pred -CCCceEEEEecCHHHHHHHHHHhCCcccCCc----eEEEee
Q psy10320 148 -RHRNEGVVEFESSSDMKKALDKLDNAELNGR----RIRLIE 184 (262)
Q Consensus 148 -~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~----~~~v~~ 184 (262)
..+|+|||+|.+.++|..||..|||..+.|. ++.|+.
T Consensus 162 ~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 162 SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 3468999999999999999999999999886 455554
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1e-33 Score=214.92 Aligned_cols=162 Identities=19% Similarity=0.355 Sum_probs=133.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.++++|+.||. +++..|.|+.|.|.++..
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~~~ 91 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAVS 91 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecccC
Confidence 5799999999999999999999999999999883 5799999999999999995 499999999999999875
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~ 149 (262)
...... ........+|||+|||..+++++|.++|+.||.|..+.+. +.+
T Consensus 92 ~~~~~~--------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~ 145 (196)
T 1l3k_A 92 REDSQR--------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145 (196)
T ss_dssp -------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE
T ss_pred cccccc--------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCc
Confidence 432210 0011234699999999999999999999999999999886 335
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCCCC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGGGR 192 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~~~ 192 (262)
+|+|||+|.+.++|.+|+.. +|..++|+.|.|..+.++....
T Consensus 146 ~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 146 RGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred cceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 78999999999999999985 8999999999999998775543
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.1e-33 Score=214.83 Aligned_cols=166 Identities=22% Similarity=0.397 Sum_probs=140.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.| .+|||||+|.+.++|+.|++.|++..|.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 579999999999999999999999999999998 379999999999999999999999999999999988765
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~ 149 (262)
......... ..........+|||+|||..+++++|.++|+.||.|..+.+.. .+
T Consensus 108 ~~~~~~~~~---------------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 108 IGQAQPIID---------------------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH 166 (216)
T ss_dssp CGGGHHHHH---------------------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE
T ss_pred ccccchhhh---------------------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 432111000 0000012246999999999999999999999999999998873 34
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
+|+|||+|.+.++|.+|+..|||..++|+.|.|.++.+..
T Consensus 167 ~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred CceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 7899999999999999999999999999999999988764
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=8e-33 Score=210.37 Aligned_cols=175 Identities=15% Similarity=0.306 Sum_probs=142.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcC----C-------ceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEE
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGY----G-------RIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVT 68 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G-------~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 68 (262)
++++|||+|||+.+|+++|+++|+.| | .|..+.+ .+|||||+|.++++|+.|+ .|||..|.|+.|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEE
Confidence 46899999999999999999999999 5 6777777 4899999999999999999 9999999999999
Q ss_pred EEEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccC
Q psy10320 69 VEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR 148 (262)
Q Consensus 69 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~ 148 (262)
|.++.............. .. ..............+|||+|||..+++++|.++|+.||.|..+.+...
T Consensus 82 v~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~ 149 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPS---------VY---VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKD 149 (198)
T ss_dssp EECCCCCCCCCCSSSCSS---------CC---CTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEEC
T ss_pred EeCCCCCCCCCCCcCCCc---------CC---CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeec
Confidence 998876533221100000 00 000011112244679999999999999999999999999999988643
Q ss_pred -----CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 149 -----HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 149 -----~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
++|+|||+|.+.++|..|+..|+|..++|+.|.|.++.++.
T Consensus 150 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 150 SATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 37899999999999999999999999999999999998764
No 11
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.8e-32 Score=219.56 Aligned_cols=184 Identities=18% Similarity=0.258 Sum_probs=142.3
Q ss_pred cceEEEcCCCCCCCHHHHH----HHHhcCCceeEEEee-----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLE----KFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~v~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+ ++|+.||.|..|.+. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++.
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 5799999999999999976 899999999999984 5999999999999999999999999999999999997
Q ss_pred CCCcccccCCCC-------------------------C--------C---CC---------------------C-CCCCC
Q psy10320 74 GIDRSQERGRRG-------------------------Y--------G---SY---------------------R-APPPR 95 (262)
Q Consensus 74 ~~~~~~~~~~~~-------------------------~--------~---~~---------------------~-~~~~~ 95 (262)
............ . . +. . .+++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~ 168 (282)
T 3pgw_A 89 TDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG 168 (282)
T ss_pred cCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCC
Confidence 644210000000 0 0 00 0 00000
Q ss_pred CCCCCCCC----------------C-----CCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEE
Q psy10320 96 RGWGHDRD----------------D-----RYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGV 154 (262)
Q Consensus 96 ~~~~~~~~----------------~-----~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~ 154 (262)
........ . .......+..+|||+|||..+++++|+++|+.||.|..+.+....+|+||
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~af 248 (282)
T 3pgw_A 169 MIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAF 248 (282)
T ss_pred CCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEE
Confidence 00000000 0 00012234578999999999999999999999999999999877779999
Q ss_pred EEecCHHHHHHHHHHhCCcccC-CceEEEeecC
Q psy10320 155 VEFESSSDMKKALDKLDNAELN-GRRIRLIEDK 186 (262)
Q Consensus 155 v~f~~~~~a~~a~~~l~g~~~~-g~~~~v~~~~ 186 (262)
|+|.+.++|..|+..|||..+. |+.|.|.+++
T Consensus 249 V~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 249 VEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 9999999999999999999999 9999999875
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=5.6e-33 Score=206.55 Aligned_cols=150 Identities=17% Similarity=0.408 Sum_probs=134.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC----C-------ceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGY----G-------RIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~----G-------~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
.++|||+|||+.+|+++|+++|+.| | .|..+.+ .+|||||+|.++++|+.|+ .|+|..|.|+.|.|
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v 82 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeee
Confidence 5899999999999999999999999 6 7788877 4899999999999999999 99999999999999
Q ss_pred EEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc--
Q psy10320 70 EIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-- 147 (262)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-- 147 (262)
.++..... .....+|||+|||..+++++|.++|++||.|..+.+..
T Consensus 83 ~~~~~~~~--------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 130 (172)
T 2g4b_A 83 RRPHDYQP--------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 130 (172)
T ss_dssp ECCSSCCC--------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred cCCcccCC--------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC
Confidence 97654211 11256899999999999999999999999999998863
Q ss_pred ---CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 148 ---RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 148 ---~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.++|+|||+|.+.++|.+|+..|||..++|+.|.|.++
T Consensus 131 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 131 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999876
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=1.2e-33 Score=210.77 Aligned_cols=155 Identities=25% Similarity=0.443 Sum_probs=136.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|..||.|..+.+ .+|||||+|.++++|+.|+ .|+|..|.|+.|.|.++...
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCc
Confidence 579999999999999999999999986544222 3799999999999999999 69999999999999998754
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEE
Q psy10320 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVV 155 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v 155 (262)
... ......+|||+|||..+++++|+++|+.||.|..+...+.++|+|||
T Consensus 92 ~~~------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV 141 (175)
T 1fje_B 92 DSK------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYI 141 (175)
T ss_dssp SCS------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEE
T ss_pred ccc------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEE
Confidence 221 11235699999999999999999999999999888444678899999
Q ss_pred EecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 156 EFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 156 ~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+|.+.++|.+|+..|+|..++|+.|.|.++.++
T Consensus 142 ~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 142 EFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp ECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred EECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 999999999999999999999999999998775
No 14
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.9e-32 Score=204.21 Aligned_cols=152 Identities=18% Similarity=0.315 Sum_probs=132.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee----------CcEEEEEeCChhhHHHHHHHhcCcccC---CceEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK----------NGFGFVEFEDYRDADDAVYELNGKSLL---GERVTV 69 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~----------~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~v 69 (262)
.++|||+|||+.+|+++|+++|+.||+|..|.+. +|||||+|.++++|+.|++.|++..+. +..+.+
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~ 82 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQM 82 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEE
Confidence 5899999999999999999999999999999873 579999999999999999999998775 577788
Q ss_pred EEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc--
Q psy10320 70 EIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-- 147 (262)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-- 147 (262)
.++...... .....+|||+|||..+++++|+++|+.||.|..+.+..
T Consensus 83 ~~~~~~~~~-------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~ 131 (175)
T 3nmr_A 83 KPADSEKNN-------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP 131 (175)
T ss_dssp EECGGGCCS-------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT
T ss_pred ccccccccc-------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC
Confidence 776643221 11256899999999999999999999999999998873
Q ss_pred --CCCceEEEEecCHHHHHHHHHHhCCcccC---CceEEEeec
Q psy10320 148 --RHRNEGVVEFESSSDMKKALDKLDNAELN---GRRIRLIED 185 (262)
Q Consensus 148 --~~~~~~~v~f~~~~~a~~a~~~l~g~~~~---g~~~~v~~~ 185 (262)
.++|+|||+|.+.++|.+|+..|||..+. ++.|.|.++
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 132 DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 35789999999999999999999998776 389999876
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.4e-33 Score=206.76 Aligned_cols=151 Identities=24% Similarity=0.467 Sum_probs=134.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.++++|+.|+.. +..+.|+.|.|.++..
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence 6899999999999999999999999999999983 58999999999999999974 5789999999988764
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~ 149 (262)
..... ...+|||+|||..+++++|.++|+.||.|..+.+. +.+
T Consensus 81 ~~~~~--------------------------------~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~ 128 (167)
T 2cjk_A 81 RDEQD--------------------------------KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQS 128 (167)
T ss_dssp HHHHH--------------------------------HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTT
T ss_pred hhhcc--------------------------------CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCcc
Confidence 32211 14589999999999999999999999999999876 345
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+|+|||+|.+.++|.+|++ ++|..++|+.|.|.++.++
T Consensus 129 ~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 129 RGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 7899999999999999998 8999999999999999875
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.98 E-value=1.1e-31 Score=212.33 Aligned_cols=149 Identities=29% Similarity=0.425 Sum_probs=135.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQE 80 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 80 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~------ 95 (261)
T 3sde_A 22 RCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH------ 95 (261)
T ss_dssp GGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC------
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc------
Confidence 4799999999999999999999999999999995 89999999999999999999999999999999998863
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEE
Q psy10320 81 RGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVE 156 (262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~ 156 (262)
..+|||+|||..+++++|.++|..||.|..+.+. +.++|+|||+
T Consensus 96 --------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~ 143 (261)
T 3sde_A 96 --------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVE 143 (261)
T ss_dssp --------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEE
T ss_pred --------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEE
Confidence 3489999999999999999999999999999876 3467899999
Q ss_pred ecCHHHHHHHHHHhCC-cccC---CceEEEeecCCCC
Q psy10320 157 FESSSDMKKALDKLDN-AELN---GRRIRLIEDKPRG 189 (262)
Q Consensus 157 f~~~~~a~~a~~~l~g-~~~~---g~~~~v~~~~~~~ 189 (262)
|.+.++|..|+..|++ ..+. ++.|.|..+.+..
T Consensus 144 f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 144 FAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp ESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred eCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 9999999999999954 4444 8999998887653
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=7.8e-31 Score=210.27 Aligned_cols=147 Identities=19% Similarity=0.312 Sum_probs=135.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQE 80 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 80 (262)
.++|||+|||+.+|+++|.++|+.|| |..|.+ .+|||||+|.++++|..|+..|+|..|.|+.|.|.++..
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~------ 94 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPT------ 94 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC------
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCC------
Confidence 58999999999999999999999999 999988 479999999999999999999999999999999997532
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEE
Q psy10320 81 RGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVV 155 (262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v 155 (262)
..+|||+|||..+++++|.++|..||.|..+.+. +.++|+|||
T Consensus 95 --------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV 142 (284)
T 3smz_A 95 --------------------------------DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFA 142 (284)
T ss_dssp --------------------------------SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEE
T ss_pred --------------------------------CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEE
Confidence 3589999999999999999999999999998776 335789999
Q ss_pred EecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 156 EFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 156 ~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
+|.+.++|..|+..|+|..++|+.|.|..+.+.
T Consensus 143 ~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 143 EYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred EECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 999999999999999999999999999988664
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=7.2e-31 Score=211.31 Aligned_cols=160 Identities=16% Similarity=0.317 Sum_probs=139.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG-RIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|.++|..|| .|..|.+ .+|||||+|.+.++|..|+..|+|..|.|+.|.|.++.+
T Consensus 117 ~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 196 (292)
T 2ghp_A 117 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNP 196 (292)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 57999999999999999999999999 9999998 379999999999999999999999999999999999875
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCC-CCHHHHHHHhhcCCceEEEecc------c
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSR-VSWQDLKDFMRQVGEVCYADAH------K 147 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~------~ 147 (262)
....... ........+|||+|||.. +++++|.++|+.||.|..+.+. +
T Consensus 197 ~~~~~~~-------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 197 LEKSKRT-------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHS 251 (292)
T ss_dssp C----------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---
T ss_pred Ccccccc-------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCC
Confidence 4332210 012233569999999999 9999999999999999999886 3
Q ss_pred CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 148 RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 148 ~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.++|+|||+|.+.++|..|+ .|||..++|+.|.|.++.++
T Consensus 252 ~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 252 FNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 45789999999999999999 99999999999999998875
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=7.8e-31 Score=210.27 Aligned_cols=159 Identities=19% Similarity=0.299 Sum_probs=140.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|.++|+.||.|..|.+. +|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~ 174 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDA 174 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCG
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 4799999999999999999999999999999873 68999999999999999999999999999999999875
Q ss_pred CCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCC-CHHHHHHHhhcCCceEEEeccc----CC
Q psy10320 75 IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRV-SWQDLKDFMRQVGEVCYADAHK----RH 149 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~i~~~~~~~----~~ 149 (262)
..... ......+|||+|||..+ ++++|.++|+.||.|..+.+.. .+
T Consensus 175 ~~~~~-----------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~ 225 (284)
T 3smz_A 175 GQLTP-----------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQL 225 (284)
T ss_dssp GGCCT-----------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCE
T ss_pred CCCCc-----------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCc
Confidence 42211 11235689999999995 9999999999999998888763 45
Q ss_pred CceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 150 RNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 150 ~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
+|+|||+|.+.++|..|+..|+|..++|+.|.|.++.++..
T Consensus 226 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 226 KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 78999999999999999999999999999999999977643
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.1e-30 Score=208.60 Aligned_cols=147 Identities=18% Similarity=0.276 Sum_probs=134.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|.++|+.||+|..|.|. +|||||+|.++++|+.|+ .|+|..|.|+.|.|.++.
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~--- 116 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLT--- 116 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECC---
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECC---
Confidence 5899999999999999999999999999999983 699999999999999999 699999999999999863
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCC-ceEEEecc----cCCCc
Q psy10320 77 RSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAH----KRHRN 151 (262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~----~~~~~ 151 (262)
..+|||+|||..+++++|.++|..|| .|..+.+. +..+|
T Consensus 117 ------------------------------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g 160 (292)
T 2ghp_A 117 ------------------------------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRR 160 (292)
T ss_dssp ------------------------------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CC
T ss_pred ------------------------------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcce
Confidence 45999999999999999999999999 99999886 34689
Q ss_pred eEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 152 EGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 152 ~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
+|||+|.+.++|..|+..|+|..+.|+.|.|..+.+..
T Consensus 161 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 198 (292)
T 2ghp_A 161 FAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLE 198 (292)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC-
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCc
Confidence 99999999999999999999999999999999987654
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=2.5e-25 Score=153.64 Aligned_cols=104 Identities=20% Similarity=0.333 Sum_probs=69.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.||+.|+|..|+|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 46899999999999999999999999999999983 789999999999999999999999999999999998754
Q ss_pred CcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHH
Q psy10320 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQD 129 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 129 (262)
....... .........|||+|||+.+|++.
T Consensus 84 ~~~~~~~------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAEL------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------------------------
T ss_pred ccccccc------------------------ccccCCCCceEeCCCCCCccccc
Confidence 3221110 00111234799999999998753
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=5.8e-23 Score=172.46 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
+.++|||+|||..+++++|.++|.+||.|..|.|+ +..+|||||+|.+.++|.+||..|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 35699999999999999999999999999999886 3468999999999999999999999999999999999887
Q ss_pred CC
Q psy10320 187 PR 188 (262)
Q Consensus 187 ~~ 188 (262)
+.
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 54
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.89 E-value=1.4e-22 Score=146.63 Aligned_cols=136 Identities=20% Similarity=0.173 Sum_probs=111.4
Q ss_pred CcEEEEEeCChhhHHHHHHHh-cCcccCCceEEEEEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy10320 37 NGFGFVEFEDYRDADDAVYEL-NGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115 (262)
Q Consensus 37 ~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (262)
+|+++|+|.+.++|++|++.| ||..++| .+.+.++............ ..............+
T Consensus 13 ~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 75 (150)
T 2i2y_A 13 KGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH----------------HHHHMHRDSCPLDCK 75 (150)
T ss_dssp CEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS----------------CCCCSCSSSSTTSCE
T ss_pred cccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc----------------ccccccccCCCCCCE
Confidence 799999999999999999999 9999999 9999877643222111000 000011122334679
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 116 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
|||+|||..+++++|+++|++||.|..+.+...++|+|||+|.+.++|..|+..|||..++|+.|.|.++.++.
T Consensus 76 l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 76 VYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp EEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred EEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999999999999988789999999999999999999999999999999999987753
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=8.7e-23 Score=136.70 Aligned_cols=72 Identities=28% Similarity=0.523 Sum_probs=68.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+|+|||+|||+++|+++|+++|+.||+|..|.|. +|||||+|.++++|+.|++.|||..|+|+.|.|.++++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 6899999999999999999999999999999983 68999999999999999999999999999999999864
No 25
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=9e-22 Score=165.24 Aligned_cols=75 Identities=27% Similarity=0.532 Sum_probs=70.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.||+++|.++|..||.|..|.|. +|||||+|.++++|+.||..|||..|.|+.|.|.++..
T Consensus 102 ~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 102 FKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERG 181 (437)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence 4799999999999999999999999999999883 78999999999999999999999999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 182 ~~~ 184 (437)
T 3pgw_S 182 RTV 184 (437)
T ss_pred CCC
Confidence 544
No 26
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=1.1e-21 Score=143.33 Aligned_cols=136 Identities=21% Similarity=0.197 Sum_probs=101.2
Q ss_pred eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCce
Q psy10320 36 KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115 (262)
Q Consensus 36 ~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (262)
.+|||||+|.++++|++|+..+++....+..+.+............ ..............+
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~ 72 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-------------------SHHHHHHMDVEGMTS 72 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-------------------CCCSSCCCCCCBCCE
T ss_pred ccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-------------------ccccccccCCCCCCE
Confidence 3799999999999999999888875333333333211111000000 000001112233569
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 116 l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
|||+|||..+++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|..|+..|||..+.|+.|.|.++.+...
T Consensus 73 l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 73 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp EEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999999999886 44689999999999999999999999999999999999987644
No 27
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.87 E-value=4.1e-22 Score=126.91 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=68.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
+++.|||+||++.+|+++|+++|.+||+|..+.+ ++|||||+|.++++|+.|+..||+..+.|+.|.|.++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4678999999999999999999999999999998 59999999999999999999999999999999999884
No 28
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.87 E-value=2e-21 Score=131.40 Aligned_cols=77 Identities=29% Similarity=0.465 Sum_probs=72.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCccc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQ 79 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 79 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+.++||||+|.+.++|+.|++.||+..|.|+.|.|.++.......
T Consensus 11 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 87 (103)
T 2dgu_A 11 VKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKR 87 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999998765544
No 29
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=7.7e-22 Score=133.08 Aligned_cols=73 Identities=48% Similarity=0.796 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
|+|||+|||+.+|+++|+++|+.||+|..|.+. +|||||+|.+.++|+.|++.|+|..|.|+.|.|.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 699999999999999999999999999999994 7899999999999999999999999999999999998754
No 30
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.4e-21 Score=130.55 Aligned_cols=77 Identities=16% Similarity=0.298 Sum_probs=70.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcC--cccCCceEEEEEccCCCc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNG--KSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~~~ 77 (262)
..++|||+|||+.+|+++|+++|++||.|.+|.|. +|||||+|++.++|+.|++.|++ ..|.|+.|.|.++.....
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 36899999999999999999999999999999996 79999999999999999998864 789999999999986544
Q ss_pred c
Q psy10320 78 S 78 (262)
Q Consensus 78 ~ 78 (262)
.
T Consensus 95 ~ 95 (105)
T 1sjq_A 95 K 95 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 31
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=126.05 Aligned_cols=76 Identities=29% Similarity=0.542 Sum_probs=72.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
..++|||+|||+++|+++|+++|+.||.|..|.+.++||||+|.+.++|+.|+..||+..|.|+.|.|.++.....
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999986543
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=126.67 Aligned_cols=74 Identities=30% Similarity=0.346 Sum_probs=68.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcc--cCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKS--LLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~ 75 (262)
.+.+|||+|||+.+|+++|.++|++||.|.+|.+. +|+|||+|++.++|..|+..|++.. |.|+.|.|++++.+
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 35799999999999999999999999999999985 8999999999999999999999875 78999999999865
No 33
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.3e-21 Score=125.96 Aligned_cols=76 Identities=22% Similarity=0.415 Sum_probs=72.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.+.++||||+|.+.++|+.|+..||+..|.|+.|.|.++.....
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999986543
No 34
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.85 E-value=6.5e-21 Score=127.25 Aligned_cols=74 Identities=27% Similarity=0.605 Sum_probs=70.7
Q ss_pred ccceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPY-GVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.+++|||+|||+ .+|+++|+++|+.||.|..|.+++|||||+|.+.++|+.|+..|||..|+|+.|.|+++...
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEECSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 368999999998 99999999999999999999999999999999999999999999999999999999998753
No 35
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=124.20 Aligned_cols=75 Identities=28% Similarity=0.507 Sum_probs=70.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe---------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEE
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL---------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEI 71 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i---------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 71 (262)
|..++|||+|||+++|+++|+++|+.||.|..|.+ .+|||||+|.+.++|+.|++.|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 45789999999999999999999999999999998 578999999999999999999999999999999999
Q ss_pred ccCC
Q psy10320 72 AKGI 75 (262)
Q Consensus 72 ~~~~ 75 (262)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8754
No 36
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=127.96 Aligned_cols=73 Identities=18% Similarity=0.307 Sum_probs=66.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCc--eeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCc----ccCCceE
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGR--IRDVIL--------KNGFGFVEFEDYRDADDAVYELNGK----SLLGERV 67 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~--v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~l 67 (262)
.+.||||+|||+.+|+++|+++|++||. |.+|.+ ++|||||+|.++++|+.|++.|||. .|+|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3689999999999999999999999995 667877 3789999999999999999999997 4899999
Q ss_pred EEEEccC
Q psy10320 68 TVEIAKG 74 (262)
Q Consensus 68 ~v~~~~~ 74 (262)
.|.+++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 37
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.2e-21 Score=128.25 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=68.9
Q ss_pred ccceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCc--ccCCceEEEEEccCCC
Q psy10320 2 VGTKVYIGGLPY-GVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGK--SLLGERVTVEIAKGID 76 (262)
Q Consensus 2 ~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~~~ 76 (262)
.+++|||+|||+ .+|+++|+++|++||.|.+|.|. ++||||+|++.++|+.|++.|++. .|.|+.|.|.++....
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 93 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 93 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCT
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCC
Confidence 357999999999 99999999999999999999995 589999999999999999999864 5999999999998643
No 38
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.84 E-value=2.6e-21 Score=133.62 Aligned_cols=98 Identities=24% Similarity=0.391 Sum_probs=87.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|..|+..|||..|.|+.|.|.++....
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANR 86 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCh
Confidence 46899999999999999999999999999999983 6899999999999999999999999999999999987532
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEcCCCCCCCHHHHHHHhhcCCc
Q psy10320 77 RSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGE 139 (262)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 139 (262)
.. .+++...++++|.++|++||.
T Consensus 87 ~~----------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 87 AF----------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HT----------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred hh----------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 21 355677888999999999984
No 39
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9e-21 Score=124.98 Aligned_cols=74 Identities=26% Similarity=0.480 Sum_probs=71.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.+.++||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999865
No 40
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.2e-21 Score=126.95 Aligned_cols=76 Identities=28% Similarity=0.578 Sum_probs=71.8
Q ss_pred ccceEEEcCCCC-CCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCc
Q psy10320 2 VGTKVYIGGLPY-GVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77 (262)
Q Consensus 2 ~~~~l~V~nl~~-~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~ 77 (262)
.+++|||+|||+ .+|+++|+++|+.||.|..|.|++|||||+|.+.++|+.|+..|||..+.|+.|.|.++.....
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 368999999998 9999999999999999999999999999999999999999999999999999999999986543
No 41
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=128.99 Aligned_cols=77 Identities=16% Similarity=0.305 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcC--cccCCceEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNG--KSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~~~~ 78 (262)
+++|||+|||+.+|+++|+++|+.||.|.+|.|. +|||||+|.+.++|+.|++.|++ ..|.|+.|.|.++......
T Consensus 31 s~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 31 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 5799999999999999999999999999999986 79999999999999999998874 6899999999999866544
Q ss_pred c
Q psy10320 79 Q 79 (262)
Q Consensus 79 ~ 79 (262)
.
T Consensus 111 ~ 111 (119)
T 2ad9_A 111 T 111 (119)
T ss_dssp C
T ss_pred c
Confidence 3
No 42
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=127.89 Aligned_cols=75 Identities=27% Similarity=0.438 Sum_probs=67.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEee--------CcEEEEEeCChhhHHHHHHHhc-CcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG-RIRDVILK--------NGFGFVEFEDYRDADDAVYELN-GKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~-~~~~~g~~l~v~~~ 72 (262)
+++|||+|||+.+|+++|+++|+.|| +|.+|.|. +|||||+|.++++|+.||+.|+ +..|+|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47999999999999999999999999 89999872 7999999999999999998875 56899999999999
Q ss_pred cCCCc
Q psy10320 73 KGIDR 77 (262)
Q Consensus 73 ~~~~~ 77 (262)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 86544
No 43
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.9e-20 Score=125.25 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhc--CcccCCceEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELN--GKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v~~~~~~~~~ 78 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|+ +..|.|+.|.|.++......
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 15 SRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 5799999999999999999999999999999986 6999999999999999998775 67899999999999876544
Q ss_pred c
Q psy10320 79 Q 79 (262)
Q Consensus 79 ~ 79 (262)
.
T Consensus 95 ~ 95 (101)
T 2cq1_A 95 T 95 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 44
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=125.48 Aligned_cols=76 Identities=22% Similarity=0.277 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCc--ccCCceEEEEEccCCCcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGK--SLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~--~~~g~~l~v~~~~~~~~~ 78 (262)
.++|||+|||+.+|+++|+++|++||.|..|.|. +|||||+|.+.++|+.|++.|++. .|.|+.|.|.++......
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 5799999999999999999999999999999985 799999999999999999988764 599999999999865443
No 45
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.84 E-value=1.7e-20 Score=128.42 Aligned_cols=74 Identities=30% Similarity=0.605 Sum_probs=70.8
Q ss_pred cceEEEcCCCCC-CCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYG-VRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+. +|+++|+++|+.||.|..|.|.+|||||+|.+.++|+.|+..|++..|.|+.|.|.++....
T Consensus 27 ~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 27 NSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp SSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEeCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 479999999999 99999999999999999999999999999999999999999999999999999999997543
No 46
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=124.64 Aligned_cols=74 Identities=31% Similarity=0.448 Sum_probs=70.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC--CceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGY--GRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~--G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.| |.|..|.+.+|||||+|.+.++|+.|+..|||..|.|+.|.|.++....
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 5799999999999999999999999 9999999999999999999999999999999999999999999998654
No 47
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=2e-20 Score=121.40 Aligned_cols=73 Identities=23% Similarity=0.448 Sum_probs=69.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|+..|||..|+|+.|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 4799999999999999999999999999999884 68999999999999999999999999999999999986
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=127.89 Aligned_cols=75 Identities=24% Similarity=0.319 Sum_probs=69.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
..++|||+|||+.+|+++|+++|++||.|.+|.|. +|||||+|.+.++|+.|++.|||..|+|+.|.|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 35799999999999999999999999999999983 6899999999999999999999999999999999997
Q ss_pred CCC
Q psy10320 74 GID 76 (262)
Q Consensus 74 ~~~ 76 (262)
...
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 553
No 49
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.84 E-value=1.5e-20 Score=127.90 Aligned_cols=74 Identities=31% Similarity=0.575 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.+.+|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEETTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEECCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999764
No 50
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=124.89 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=69.9
Q ss_pred cceEEEcCCCCCCCHHHHH----HHHhcCCceeEEEee-----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLE----KFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~v~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
+++|||+|||+.+|+++|+ ++|+.||.|..|.|. ++||||+|.+.++|+.|++.|||..|.|+.|.|.++.
T Consensus 9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 9 GADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp CEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 6899999999999999999 999999999999996 8999999999999999999999999999999999997
Q ss_pred CC
Q psy10320 74 GI 75 (262)
Q Consensus 74 ~~ 75 (262)
..
T Consensus 89 ~~ 90 (96)
T 2dgx_A 89 GA 90 (96)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 51
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=125.69 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=70.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeC-cEEEEEeCChhhHHHHHHHhcCcccCC-----ceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-GFGFVEFEDYRDADDAVYELNGKSLLG-----ERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~-g~afV~f~~~~~a~~a~~~l~~~~~~g-----~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|..||+|..|.|.. |||||+|.+.++|+.||+.||+..|.| +.|.|.++....
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETTTEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecCCEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCC
Confidence 57999999999999999999999999999999976 999999999999999999999999999 999999998754
Q ss_pred c
Q psy10320 77 R 77 (262)
Q Consensus 77 ~ 77 (262)
.
T Consensus 95 ~ 95 (108)
T 1x4c_A 95 P 95 (108)
T ss_dssp C
T ss_pred C
Confidence 3
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.8e-20 Score=124.65 Aligned_cols=76 Identities=32% Similarity=0.579 Sum_probs=71.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..||+..|.|+.|.|.++....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 15 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 5899999999999999999999999999999995 7899999999999999999999999999999999998764
Q ss_pred cc
Q psy10320 77 RS 78 (262)
Q Consensus 77 ~~ 78 (262)
..
T Consensus 95 ~~ 96 (103)
T 2cq3_A 95 MT 96 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 53
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.83 E-value=5.9e-20 Score=126.78 Aligned_cols=76 Identities=26% Similarity=0.490 Sum_probs=70.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|+.||+.|||..|.|+.|.|.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (115)
T 2dgo_A 15 HFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 94 (115)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 5799999999999999999999999999999984 58999999999999999999999999999999999987
Q ss_pred CCcc
Q psy10320 75 IDRS 78 (262)
Q Consensus 75 ~~~~ 78 (262)
....
T Consensus 95 ~~~~ 98 (115)
T 2dgo_A 95 KPPA 98 (115)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 54
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=125.62 Aligned_cols=76 Identities=28% Similarity=0.480 Sum_probs=71.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 36899999999999999999999999999999985 689999999999999999999999999999999999875
Q ss_pred Cc
Q psy10320 76 DR 77 (262)
Q Consensus 76 ~~ 77 (262)
..
T Consensus 94 ~~ 95 (103)
T 2d9p_A 94 EE 95 (103)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 55
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-20 Score=122.89 Aligned_cols=76 Identities=26% Similarity=0.422 Sum_probs=71.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 36899999999999999999999999999999983 5899999999999999999999999999999999998
Q ss_pred CCCc
Q psy10320 74 GIDR 77 (262)
Q Consensus 74 ~~~~ 77 (262)
....
T Consensus 87 ~~~~ 90 (99)
T 1whw_A 87 IKKE 90 (99)
T ss_dssp CCST
T ss_pred CCcc
Confidence 7644
No 56
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=3.9e-20 Score=120.59 Aligned_cols=71 Identities=35% Similarity=0.609 Sum_probs=67.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+ .+|||||+|.+.++|+.|++.|||..|.|+.|.|.+++
T Consensus 7 ~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 7 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp SSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 589999999999999999999999999999998 37899999999999999999999999999999999874
No 57
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.8e-20 Score=124.24 Aligned_cols=75 Identities=28% Similarity=0.453 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..||+..|.|+.|.|.++....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 15 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred CCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 5899999999999999999999999999999994 5899999999999999999999999999999999998754
Q ss_pred c
Q psy10320 77 R 77 (262)
Q Consensus 77 ~ 77 (262)
.
T Consensus 95 ~ 95 (103)
T 2cqi_A 95 S 95 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=9.4e-20 Score=125.59 Aligned_cols=74 Identities=24% Similarity=0.379 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|+.|++.||+..|.|+.|.|.++...
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 5799999999999999999999999999999984 589999999999999999999999999999999998754
Q ss_pred C
Q psy10320 76 D 76 (262)
Q Consensus 76 ~ 76 (262)
.
T Consensus 95 ~ 95 (114)
T 2do0_A 95 L 95 (114)
T ss_dssp C
T ss_pred C
Confidence 3
No 59
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=127.68 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=69.4
Q ss_pred ccceEEEcCCCCC-CCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcC--cccCCceEEEEEccCCC
Q psy10320 2 VGTKVYIGGLPYG-VRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNG--KSLLGERVTVEIAKGID 76 (262)
Q Consensus 2 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~--~~~~g~~l~v~~~~~~~ 76 (262)
.+++|||+|||++ +|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|++ ..|.|+.|.|.++....
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 3679999999998 9999999999999999999995 79999999999999999998864 56999999999998654
Q ss_pred cc
Q psy10320 77 RS 78 (262)
Q Consensus 77 ~~ 78 (262)
..
T Consensus 104 ~~ 105 (112)
T 1x4f_A 104 KL 105 (112)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 60
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.83 E-value=1.9e-20 Score=127.23 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=68.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEee----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG-RIRDVILK----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~i~----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.|| +|..+.|. +|||||+|.+.++|+.||+.|||..|.|+.|.|.++...
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 47999999999999999999999999 89999984 899999999999999999999999999999999998743
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=124.47 Aligned_cols=75 Identities=33% Similarity=0.573 Sum_probs=70.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARY 92 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCc
Confidence 5899999999999999999999999999999983 68999999999999999999999999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 93 ~~~ 95 (103)
T 2dnm_A 93 GRR 95 (103)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 62
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=9.2e-20 Score=121.41 Aligned_cols=75 Identities=28% Similarity=0.526 Sum_probs=70.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.+++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 36899999999999999999999999999999983 5799999999999999999999999999999999997
Q ss_pred CCC
Q psy10320 74 GID 76 (262)
Q Consensus 74 ~~~ 76 (262)
...
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=120.97 Aligned_cols=73 Identities=26% Similarity=0.480 Sum_probs=67.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++..
T Consensus 6 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 6 HFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 5799999999999999999999999999999983 58999999999999999999999999999999999875
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
+
T Consensus 86 k 86 (87)
T 3bs9_A 86 K 86 (87)
T ss_dssp -
T ss_pred C
Confidence 3
No 64
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.4e-20 Score=122.63 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=69.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccC--CceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLL--GERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~~ 75 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|++.||+..|. |+.|.|.++.+.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 35899999999999999999999999999999996 679999999999999999999999999 999999999864
No 65
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.1e-20 Score=124.84 Aligned_cols=74 Identities=45% Similarity=0.746 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. ++||||+|.+.++|+.||+.||+..|.|+.|.|.++....
T Consensus 22 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 22 DCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 5799999999999999999999999999999984 6899999999999999999999999999999999998653
No 66
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-20 Score=126.36 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=69.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.| .++||||+|.+.++|+.|+..|||..|.|+.|.|+|+...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 579999999999999999999999999999999 4899999999999999999999999999999999999754
No 67
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8e-20 Score=122.88 Aligned_cols=75 Identities=28% Similarity=0.570 Sum_probs=70.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++.+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 35899999999999999999999999999999984 48999999999999999999999999999999999986
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 96 ~~ 97 (100)
T 2do4_A 96 GP 97 (100)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 68
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=125.33 Aligned_cols=75 Identities=39% Similarity=0.585 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++...
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 5899999999999999999999999999999995 499999999999999999999999999999999999865
Q ss_pred Cc
Q psy10320 76 DR 77 (262)
Q Consensus 76 ~~ 77 (262)
..
T Consensus 87 ~~ 88 (116)
T 2fy1_A 87 SF 88 (116)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 69
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=8.5e-20 Score=121.77 Aligned_cols=76 Identities=26% Similarity=0.496 Sum_probs=71.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|+|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 6899999999999999999999999999999983 68999999999999999999999999999999999987
Q ss_pred CCcc
Q psy10320 75 IDRS 78 (262)
Q Consensus 75 ~~~~ 78 (262)
....
T Consensus 82 ~~~~ 85 (96)
T 2x1f_A 82 SDIS 85 (96)
T ss_dssp SSGG
T ss_pred CCCC
Confidence 6543
No 70
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=124.56 Aligned_cols=75 Identities=33% Similarity=0.569 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.| .+|||||+|.+.++|+.|++.||+..|.|+.|.|.++..
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 91 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKP 91 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCC
Confidence 579999999999999999999999999999998 378999999999999999999999999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 92 ~~~ 94 (102)
T 2cqb_A 92 MRI 94 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 71
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.2e-20 Score=122.53 Aligned_cols=75 Identities=28% Similarity=0.412 Sum_probs=68.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEe-eCcEEEEEeCChhhHHHHHHHhcC-cccCCceEEEEEccCCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGR-IRDVIL-KNGFGFVEFEDYRDADDAVYELNG-KSLLGERVTVEIAKGID 76 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~v~i-~~g~afV~f~~~~~a~~a~~~l~~-~~~~g~~l~v~~~~~~~ 76 (262)
..++|||+|||+++|+++|+++|+.||. |..+.+ .+|||||+|.+.++|+.|++.||| ..|.|+.|.|.++....
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 3589999999999999999999999999 666655 599999999999999999999999 99999999999998653
No 72
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=123.51 Aligned_cols=75 Identities=31% Similarity=0.457 Sum_probs=70.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..||+..|.|+.|.|.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 94 (105)
T 1x5u_A 15 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASA 94 (105)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 5799999999999999999999999999999983 58999999999999999999999999999999999987
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 95 ~~~ 97 (105)
T 1x5u_A 95 HNK 97 (105)
T ss_dssp TSC
T ss_pred CCc
Confidence 544
No 73
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.2e-20 Score=122.13 Aligned_cols=76 Identities=25% Similarity=0.510 Sum_probs=70.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEE
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVE 70 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 70 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 36899999999999999999999999999999884 3799999999999999999999999999999999
Q ss_pred EccCCCc
Q psy10320 71 IAKGIDR 77 (262)
Q Consensus 71 ~~~~~~~ 77 (262)
++.....
T Consensus 84 ~a~~~~~ 90 (98)
T 2cpf_A 84 ISERATK 90 (98)
T ss_dssp CSSCSSC
T ss_pred EccCCCC
Confidence 9986543
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.6e-20 Score=122.72 Aligned_cols=76 Identities=25% Similarity=0.447 Sum_probs=70.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEE-Eee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.+++|||+|||+.+|+++|+++|+.||.|..| .|. +|||||+|.++++|+.|+..|||..|.|+.|.|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 46899999999999999999999999999988 773 689999999999999999999999999999999999
Q ss_pred cCCCc
Q psy10320 73 KGIDR 77 (262)
Q Consensus 73 ~~~~~ 77 (262)
.....
T Consensus 84 ~~~~~ 88 (96)
T 1x5t_A 84 FKKDS 88 (96)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 86543
No 75
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=124.96 Aligned_cols=73 Identities=32% Similarity=0.608 Sum_probs=68.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.||..|++ .|.|+.|.|.++..
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~ 95 (116)
T 2cqd_A 17 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL 95 (116)
T ss_dssp SSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence 5899999999999999999999999999999983 57999999999999999999998 89999999999976
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 96 ~~ 97 (116)
T 2cqd_A 96 GA 97 (116)
T ss_dssp TC
T ss_pred CC
Confidence 53
No 76
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-19 Score=121.36 Aligned_cols=74 Identities=32% Similarity=0.714 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++ |++..|.|+.|.|.++..
T Consensus 10 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~ 88 (99)
T 2dgs_A 10 SNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEP 88 (99)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCC
Confidence 5899999999999999999999999999999983 6899999999999999997 999999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 89 ~~~ 91 (99)
T 2dgs_A 89 RDS 91 (99)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 77
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.3e-20 Score=123.55 Aligned_cols=75 Identities=39% Similarity=0.740 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.++++|+.|++.||+..|.|+.|.|.++..
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 91 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 91 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEEC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5799999999999999999999999999999993 57999999999999999999999999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 92 ~~~ 94 (102)
T 1x5s_A 92 SSD 94 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 78
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=122.10 Aligned_cols=74 Identities=28% Similarity=0.575 Sum_probs=70.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|++.|+|..|.|+.|.|.++....
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 4799999999999999999999999999999996 6999999999999999999999999999999999998653
No 79
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=8.3e-20 Score=125.77 Aligned_cols=75 Identities=48% Similarity=0.817 Sum_probs=66.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCce-----EEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRR-----IRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~-----~~v~~~ 185 (262)
...++|||+|||..+++++|+++|++||.|..+.+... ++|||+|++.++|.+||+.|||..|+|+. |.|..+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 44679999999999999999999999999999998765 99999999999999999999999999988 777766
Q ss_pred CC
Q psy10320 186 KP 187 (262)
Q Consensus 186 ~~ 187 (262)
.+
T Consensus 92 ~~ 93 (115)
T 3beg_B 92 GP 93 (115)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 80
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=1.3e-19 Score=123.05 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=70.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCC---ceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLG---ERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g---~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.| +.|.|.++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a 94 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFA 94 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEES
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEEC
Confidence 5899999999999999999999999999999984 6899999999999999999999999988 99999999
Q ss_pred cCCCc
Q psy10320 73 KGIDR 77 (262)
Q Consensus 73 ~~~~~ 77 (262)
.....
T Consensus 95 ~~~~~ 99 (105)
T 2dnh_A 95 DTDKE 99 (105)
T ss_dssp CSSCC
T ss_pred ccCcc
Confidence 87543
No 81
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-19 Score=123.54 Aligned_cols=74 Identities=24% Similarity=0.480 Sum_probs=70.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|+|..|.|+.|.|.++....
T Consensus 25 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 25 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp CCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 5799999999999999999999999999999996 7999999999999999999999999999999999998654
No 82
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=9e-20 Score=121.21 Aligned_cols=71 Identities=28% Similarity=0.578 Sum_probs=67.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.||+|..|.+. +|||||+|.+.++|+.|++.||+..|.|+.|.|.+++
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp TTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 5799999999999999999999999999999983 5899999999999999999999999999999999874
No 83
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=123.71 Aligned_cols=73 Identities=29% Similarity=0.584 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 23 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 23 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp BEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence 5789999999999999999999999999999984 68999999999999999999999999999999999976
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 103 ~ 103 (106)
T 1p27_B 103 R 103 (106)
T ss_dssp S
T ss_pred C
Confidence 4
No 84
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=9.5e-20 Score=125.71 Aligned_cols=75 Identities=23% Similarity=0.449 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.||+.||+..|.|+.|.|.++..
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 104 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRS 104 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCC
Confidence 4799999999999999999999999999999883 47999999999999999999999999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 105 ~~~ 107 (115)
T 2cpz_A 105 KND 107 (115)
T ss_dssp SCC
T ss_pred CCc
Confidence 543
No 85
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.3e-20 Score=123.77 Aligned_cols=74 Identities=27% Similarity=0.433 Sum_probs=69.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 94 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCC
Confidence 5799999999999999999999999999999984 57999999999999999999999999999999999986
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 95 ~~ 96 (103)
T 2cq0_A 95 ST 96 (103)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 86
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.5e-20 Score=124.55 Aligned_cols=73 Identities=33% Similarity=0.617 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|+..|||..|+|+.|.|.++..+
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 5799999999999999999999999999999994 799999999999999999999999999999999998754
No 87
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=1.1e-19 Score=127.50 Aligned_cols=76 Identities=28% Similarity=0.559 Sum_probs=71.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++..
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 101 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV 101 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecC
Confidence 5799999999999999999999999999999984 78999999999999999999999999999999999986
Q ss_pred CCcc
Q psy10320 75 IDRS 78 (262)
Q Consensus 75 ~~~~ 78 (262)
....
T Consensus 102 ~~~~ 105 (126)
T 3ex7_B 102 RGPP 105 (126)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 5443
No 88
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=4.3e-20 Score=123.98 Aligned_cols=73 Identities=23% Similarity=0.381 Sum_probs=69.0
Q ss_pred cceEEEcCCCC------CCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCC-ceE
Q psy10320 3 GTKVYIGGLPY------GVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLG-ERV 67 (262)
Q Consensus 3 ~~~l~V~nl~~------~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~l 67 (262)
.++|||+|||+ .+++++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 68999999999 99999999999999999999983 7999999999999999999999999999 999
Q ss_pred EEEEccCC
Q psy10320 68 TVEIAKGI 75 (262)
Q Consensus 68 ~v~~~~~~ 75 (262)
.|.++.+.
T Consensus 86 ~V~~a~~~ 93 (100)
T 3ns6_A 86 FLYTMKDV 93 (100)
T ss_dssp EEEESHHH
T ss_pred EEEECchh
Confidence 99998754
No 89
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=120.89 Aligned_cols=72 Identities=36% Similarity=0.493 Sum_probs=67.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|++.|||..|.|+.|.|.+++.
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 5799999999999999999999999999999983 57999999999999999999999999999999998863
No 90
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=1.4e-19 Score=123.31 Aligned_cols=71 Identities=25% Similarity=0.500 Sum_probs=67.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++.
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5799999999999999999999999999999985 7899999999999999999999999999999999875
No 91
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=120.46 Aligned_cols=71 Identities=30% Similarity=0.425 Sum_probs=67.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.++++|+.|++.||+..|.|+.|.|.++.
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 5799999999999999999999999999999984 5899999999999999999999999999999999875
No 92
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-18 Score=119.00 Aligned_cols=77 Identities=48% Similarity=0.800 Sum_probs=71.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCC-----ceEEEee
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNG-----RRIRLIE 184 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g-----~~~~v~~ 184 (262)
....++|||+|||..+++++|+++|.+||.|..+.+... ++|||+|.+.++|++||+.|||..|.| +.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~ 89 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 89 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEe
Confidence 345679999999999999999999999999999999865 999999999999999999999999999 9999999
Q ss_pred cCCC
Q psy10320 185 DKPR 188 (262)
Q Consensus 185 ~~~~ 188 (262)
+.++
T Consensus 90 a~~~ 93 (108)
T 1x4c_A 90 DGPR 93 (108)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8773
No 93
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=8.9e-20 Score=122.72 Aligned_cols=73 Identities=19% Similarity=0.372 Sum_probs=68.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..++|||+|||+.+|+++|.++|+.||+|..|.|. +|||||+|.++++|+.|+. +++..|.|+.|.|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 35899999999999999999999999999999984 6999999999999999996 999999999999998876
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 89 ~ 89 (103)
T 1s79_A 89 Y 89 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.3e-20 Score=123.64 Aligned_cols=72 Identities=24% Similarity=0.361 Sum_probs=68.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 5799999999999999999999999999999984 89999999999999999999999999999999998864
No 95
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=1.8e-19 Score=123.32 Aligned_cols=73 Identities=23% Similarity=0.460 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 5799999999999999999999999999999983 68999999999999999999999999999999999976
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 106 ~ 106 (110)
T 1oo0_B 106 K 106 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 96
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=122.78 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=68.8
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCc-eEEE
Q psy10320 3 GTKVYIGGLPYGV------RERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGE-RVTV 69 (262)
Q Consensus 3 ~~~l~V~nl~~~~------t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v 69 (262)
+++|||+|||+.+ |+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+ .|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 5899999999999 789999999999999999985 69999999999999999999999999998 9999
Q ss_pred EEccCC
Q psy10320 70 EIAKGI 75 (262)
Q Consensus 70 ~~~~~~ 75 (262)
.++...
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 998754
No 97
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=117.93 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=67.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHh-cCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYEL-NGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|+..| ++..|.|+.|.|.+++
T Consensus 12 ~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 12 ITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 5799999999999999999999999999999995 699999999999999999988 9999999999999874
No 98
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=122.50 Aligned_cols=75 Identities=24% Similarity=0.457 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhc------CcccCCceEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELN------GKSLLGERVT 68 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~------~~~~~g~~l~ 68 (262)
.++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|+.||..|| +..|.|+.|.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~ 94 (111)
T 1x4h_A 15 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLK 94 (111)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEE
Confidence 5799999999999999999999999999999984 7899999999999999999999 9999999999
Q ss_pred EEEccCCCc
Q psy10320 69 VEIAKGIDR 77 (262)
Q Consensus 69 v~~~~~~~~ 77 (262)
|.++.....
T Consensus 95 v~~a~~~~~ 103 (111)
T 1x4h_A 95 VDLAVTRDE 103 (111)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCcc
Confidence 999986533
No 99
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=1.8e-19 Score=119.31 Aligned_cols=74 Identities=24% Similarity=0.430 Sum_probs=69.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.||+..|.|+.|.|.++....
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 5899999999999999999999999999999984 6999999999999999999999999999999999998653
No 100
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=121.07 Aligned_cols=72 Identities=28% Similarity=0.456 Sum_probs=66.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.||.|. +.+ .+|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 68999999999999999999999999986 444 3899999999999999999999999999999999999764
No 101
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=2.8e-20 Score=122.52 Aligned_cols=72 Identities=22% Similarity=0.374 Sum_probs=63.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYG--RIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.+|||+|||+.+|+++|+++|+.|| .|..|.+. +|||||+|.+.++|+.|++.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 99999873 6899999999999999999999999999999999987
Q ss_pred CC
Q psy10320 74 GI 75 (262)
Q Consensus 74 ~~ 75 (262)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 64
No 102
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=122.80 Aligned_cols=73 Identities=30% Similarity=0.563 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|+|..|.|+.|.|.++..
T Consensus 26 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 105 (108)
T 2jrs_A 26 PMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTE 105 (108)
T ss_dssp CEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEccc
Confidence 5799999999999999999999999999999984 58999999999999999999999999999999999875
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
+
T Consensus 106 k 106 (108)
T 2jrs_A 106 R 106 (108)
T ss_dssp S
T ss_pred C
Confidence 4
No 103
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=125.98 Aligned_cols=75 Identities=17% Similarity=0.329 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHHHHH----HHHhcCCceeEEEee-----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLE----KFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~v~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+++++|+ ++|+.||.|.+|.+. +|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~ 108 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSE 108 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEcc
Confidence 5799999999999999876 699999999999883 7999999999999999999999999999999999998
Q ss_pred CCCc
Q psy10320 74 GIDR 77 (262)
Q Consensus 74 ~~~~ 77 (262)
....
T Consensus 109 ~~~~ 112 (127)
T 2a3j_A 109 TPQS 112 (127)
T ss_dssp CCCH
T ss_pred Ccch
Confidence 6543
No 104
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=120.85 Aligned_cols=71 Identities=25% Similarity=0.423 Sum_probs=66.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCce
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRD--------VILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGER 66 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 66 (262)
.++|||+|||+.+|+++|+++|+.||.|.. |.|. +|||||+|.+.++|+.|++.|||..|.|+.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 589999999999999999999999999998 8773 689999999999999999999999999999
Q ss_pred EEEEEcc
Q psy10320 67 VTVEIAK 73 (262)
Q Consensus 67 l~v~~~~ 73 (262)
|.|.+++
T Consensus 93 l~V~~A~ 99 (99)
T 2la6_A 93 IKVSFAT 99 (99)
T ss_dssp CEEEECC
T ss_pred EEEEecC
Confidence 9999874
No 105
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.7e-19 Score=117.66 Aligned_cols=72 Identities=24% Similarity=0.548 Sum_probs=67.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|+ .|||..|.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 5799999999999999999999999999999883 689999999999999999 9999999999999999875
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 106
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=121.66 Aligned_cols=74 Identities=24% Similarity=0.402 Sum_probs=68.9
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCcee-EEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCce----EE
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIR-DVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGER----VT 68 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~-~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~----l~ 68 (262)
.+++|||+|||+.+|+++|+++|+.||.|. .|.|. +|||||+|.+.++|+.|++.|||..|.|+. |.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 468999999999999999999999999999 99883 489999999999999999999999999999 99
Q ss_pred EEEccCC
Q psy10320 69 VEIAKGI 75 (262)
Q Consensus 69 v~~~~~~ 75 (262)
|.++...
T Consensus 88 v~~a~~~ 94 (99)
T 2div_A 88 LNYATYS 94 (99)
T ss_dssp EEETTCC
T ss_pred EeecCCC
Confidence 9998754
No 107
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=123.89 Aligned_cols=75 Identities=16% Similarity=0.313 Sum_probs=69.8
Q ss_pred ccceEEEcCCCCCCCHHHHH---HHHhcCCceeEEEee-----------CcEEEEEeCChhhHHHHHHHhcCcccCCceE
Q psy10320 2 VGTKVYIGGLPYGVRERDLE---KFVKGYGRIRDVILK-----------NGFGFVEFEDYRDADDAVYELNGKSLLGERV 67 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~---~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 67 (262)
..++|||+|||+.+|+++|+ ++|..||+|..|.|. +|||||+|.+.++|+.||+.|||..|+|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35799999999999999999 999999999999984 2799999999999999999999999999999
Q ss_pred EEEEccCCC
Q psy10320 68 TVEIAKGID 76 (262)
Q Consensus 68 ~v~~~~~~~ 76 (262)
.|.++..+.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998764
No 108
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.80 E-value=3.6e-19 Score=118.98 Aligned_cols=75 Identities=21% Similarity=0.458 Sum_probs=70.7
Q ss_pred cceEEEcCCCCCCCHHHHH----HHHhcCCceeEEEee-----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLE----KFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~v~i~-----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
+++|||+|||+.+|+++|+ ++|+.||.|..|.+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 87 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEcc
Confidence 5899999999999999999 999999999999985 7999999999999999999999999999999999998
Q ss_pred CCCc
Q psy10320 74 GIDR 77 (262)
Q Consensus 74 ~~~~ 77 (262)
....
T Consensus 88 ~~~~ 91 (97)
T 1nu4_A 88 TDSD 91 (97)
T ss_dssp SCCT
T ss_pred CCCc
Confidence 7543
No 109
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.80 E-value=2.3e-19 Score=123.52 Aligned_cols=72 Identities=24% Similarity=0.338 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeC-cEEEEEeCChhhHHHHHHHhcCcccCCce-----EEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-GFGFVEFEDYRDADDAVYELNGKSLLGER-----VTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~-g~afV~f~~~~~a~~a~~~l~~~~~~g~~-----l~v~~~~~ 74 (262)
.++|||+|||+++|+++|+++|+.||+|..|.|.. |||||+|.+.++|+.||+.|||..|+|+. |.|.....
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTTSEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecCCEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 57999999999999999999999999999999976 99999999999999999999999999998 66666554
No 110
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=3.1e-19 Score=121.30 Aligned_cols=75 Identities=23% Similarity=0.464 Sum_probs=69.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCccc---CCceEEEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSL---LGERVTVEI 71 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~---~g~~l~v~~ 71 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..||+..+ .|+.|.|.+
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 5799999999999999999999999999999983 58999999999999999999999887 889999999
Q ss_pred ccCCCc
Q psy10320 72 AKGIDR 77 (262)
Q Consensus 72 ~~~~~~ 77 (262)
+.....
T Consensus 93 a~~~~~ 98 (106)
T 2dgp_A 93 ADSESR 98 (106)
T ss_dssp CCCCSC
T ss_pred CCcccc
Confidence 986543
No 111
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=121.48 Aligned_cols=75 Identities=25% Similarity=0.371 Sum_probs=69.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc-CCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcc-cCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKG-YGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKS-LLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~-~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|.. ||.|..|.|. +|||||+|.+.++|+.|+..|++.. |.|+.|.|.++.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~ 88 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI 88 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEcc
Confidence 589999999999999999999999 9999999983 7899999999999999999999999 999999999997
Q ss_pred CCCc
Q psy10320 74 GIDR 77 (262)
Q Consensus 74 ~~~~ 77 (262)
....
T Consensus 89 ~~~~ 92 (104)
T 2dhg_A 89 PKAS 92 (104)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 6543
No 112
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.7e-19 Score=122.11 Aligned_cols=76 Identities=18% Similarity=0.382 Sum_probs=69.1
Q ss_pred cceEEE--cCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCccc-----CCceEEEEEcc
Q psy10320 3 GTKVYI--GGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSL-----LGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V--~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~-----~g~~l~v~~~~ 73 (262)
+.+||| +||++.+|+++|+++|++||+|..|.|. +|||||+|.+.++|++|++.|||..| .|..|.|.++.
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 468999 7799999999999999999999999985 78999999999999999999999987 68899999998
Q ss_pred CCCcc
Q psy10320 74 GIDRS 78 (262)
Q Consensus 74 ~~~~~ 78 (262)
.....
T Consensus 105 ~~p~~ 109 (114)
T 2cq2_A 105 KVQWS 109 (114)
T ss_dssp CCCCS
T ss_pred cCccc
Confidence 65443
No 113
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.79 E-value=1.5e-19 Score=126.82 Aligned_cols=73 Identities=36% Similarity=0.500 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.|.++..
T Consensus 46 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 5799999999999999999999999999999983 68999999999999999999999999999999999876
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
+
T Consensus 126 ~ 126 (129)
T 2kxn_B 126 K 126 (129)
T ss_dssp S
T ss_pred C
Confidence 4
No 114
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=121.69 Aligned_cols=76 Identities=28% Similarity=0.525 Sum_probs=70.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++..
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4799999999999999999999999999999984 68999999999999999999999999999999999987
Q ss_pred CCcc
Q psy10320 75 IDRS 78 (262)
Q Consensus 75 ~~~~ 78 (262)
....
T Consensus 88 ~~~~ 91 (104)
T 1p1t_A 88 EKNK 91 (104)
T ss_dssp TTHH
T ss_pred ccch
Confidence 6544
No 115
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=122.54 Aligned_cols=75 Identities=28% Similarity=0.434 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCcee--------EEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCce
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIR--------DVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGER 66 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--------~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 66 (262)
.++|||+|||+.+|+++|+++|+.||.|. .|.|. +|||||+|.+.++|+.||..|||..|.|+.
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 15 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 57999999999999999999999999998 57773 689999999999999999999999999999
Q ss_pred EEEEEccCCCc
Q psy10320 67 VTVEIAKGIDR 77 (262)
Q Consensus 67 l~v~~~~~~~~ 77 (262)
|.|.++.....
T Consensus 95 l~V~~a~~~~~ 105 (113)
T 2cpe_A 95 LKVSLARKKPP 105 (113)
T ss_dssp CEEECSSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999986543
No 116
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=113.51 Aligned_cols=73 Identities=16% Similarity=0.333 Sum_probs=65.9
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhcC-CceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcc
Q psy10320 4 TKVYIGGLPYGVRERD----LEKFVKGY-GRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRS 78 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~----l~~~F~~~-G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 78 (262)
|.|||+|||..+++++ |.++|+.| |+|.+|. .|+|||.|.+.++|..|++.|+|..+.|+.|.|.+++.....
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 4599999999999998 55899999 5999983 499999999999999999999999999999999999876443
No 117
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=119.79 Aligned_cols=75 Identities=28% Similarity=0.584 Sum_probs=70.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---------CcEEEEEeCChhhHHHHHHHh-cCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---------NGFGFVEFEDYRDADDAVYEL-NGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~a~~a~~~l-~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..| |+..|.|+.|.|.++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a 94 (107)
T 2cph_A 15 TSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 94 (107)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEEC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeC
Confidence 5899999999999999999999999999999983 589999999999999999999 999999999999999
Q ss_pred cCCCc
Q psy10320 73 KGIDR 77 (262)
Q Consensus 73 ~~~~~ 77 (262)
.....
T Consensus 95 ~~~~~ 99 (107)
T 2cph_A 95 DSEVT 99 (107)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 118
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.79 E-value=7e-19 Score=125.57 Aligned_cols=76 Identities=29% Similarity=0.503 Sum_probs=70.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 121 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAAS 121 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5799999999999999999999999999999983 68999999999999999999999999999999999987
Q ss_pred CCcc
Q psy10320 75 IDRS 78 (262)
Q Consensus 75 ~~~~ 78 (262)
....
T Consensus 122 ~~~~ 125 (139)
T 1u6f_A 122 GHQR 125 (139)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 119
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-19 Score=120.37 Aligned_cols=76 Identities=28% Similarity=0.418 Sum_probs=69.5
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCc-eeEEEee---------CcEEEEEeCChhhHHHHHHHhc--CcccCCceEEE
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGR-IRDVILK---------NGFGFVEFEDYRDADDAVYELN--GKSLLGERVTV 69 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~-v~~v~i~---------~g~afV~f~~~~~a~~a~~~l~--~~~~~g~~l~v 69 (262)
..++|||+|||+.+|+++|+++|..||. |..|.+. +|||||+|.+.++|+.|+..|+ +..|.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3689999999999999999999999998 9999884 6899999999999999999996 58999999999
Q ss_pred EEccCCCc
Q psy10320 70 EIAKGIDR 77 (262)
Q Consensus 70 ~~~~~~~~ 77 (262)
.++.+...
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99986543
No 120
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=5.3e-19 Score=122.45 Aligned_cols=73 Identities=19% Similarity=0.369 Sum_probs=67.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---CcE-EEEEeCChhhHHHHHHHhcCcccCC--ceEEEEEccCCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGF-GFVEFEDYRDADDAVYELNGKSLLG--ERVTVEIAKGID 76 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 76 (262)
..|||+||++.+|+++|.++|++||.|.+|.|. +|+ |||+|.++++|+.|++.|||..|.| +.|.|++++...
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCc
Confidence 368899999999999999999999999999884 577 9999999999999999999999988 899999998753
No 121
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=2.5e-19 Score=124.21 Aligned_cols=71 Identities=27% Similarity=0.458 Sum_probs=66.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+++|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|+|+.|.|++++
T Consensus 40 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 40 GCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp SEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 4799999999999999999999999999999983 6899999999999999999999999999999999874
No 122
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-19 Score=116.84 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=62.8
Q ss_pred cceEEEcCCCCCC------CHHHHHHHHhcCCceeEEEee------CcEEEEEeCChhhHHHHHHHhcCcccCCc-eEEE
Q psy10320 3 GTKVYIGGLPYGV------RERDLEKFVKGYGRIRDVILK------NGFGFVEFEDYRDADDAVYELNGKSLLGE-RVTV 69 (262)
Q Consensus 3 ~~~l~V~nl~~~~------t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~a~~a~~~l~~~~~~g~-~l~v 69 (262)
+++|||+|||+.+ |+++|+++|+.||+|..|.|. +|||||+|.+.++|+.|+..|||..|.|+ .|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999984 69999999999999999999999999999 8865
No 123
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-19 Score=119.26 Aligned_cols=73 Identities=36% Similarity=0.657 Sum_probs=68.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.|| |..|.|. +|||||+|.+.++|+.|| .||+..|.|+.|.|.++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 15 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp CEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECC
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEcc
Confidence 57999999999999999999999999 9999983 679999999999999999 999999999999999998
Q ss_pred CCCc
Q psy10320 74 GIDR 77 (262)
Q Consensus 74 ~~~~ 77 (262)
....
T Consensus 93 ~~~~ 96 (104)
T 1wi8_A 93 QAQD 96 (104)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 124
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=7e-19 Score=118.86 Aligned_cols=73 Identities=30% Similarity=0.582 Sum_probs=67.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.|| |..|.|. +|||||+|.+.++|+.|+ .||+..|.|+.|.|.++..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2dng_A 15 PYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEG 92 (103)
T ss_dssp CEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecC
Confidence 57999999999999999999999997 9999883 689999999999999999 9999999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 93 ~~~ 95 (103)
T 2dng_A 93 RKQ 95 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 125
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.9e-19 Score=121.52 Aligned_cols=73 Identities=32% Similarity=0.550 Sum_probs=68.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|| .|||..|.|+.|.|.++..
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 4799999999999999999999999999999983 689999999999999999 9999999999999999976
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 104 ~~ 105 (114)
T 2cq4_A 104 EK 105 (114)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 126
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1.1e-18 Score=121.93 Aligned_cols=73 Identities=23% Similarity=0.470 Sum_probs=69.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 35 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 35 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 5799999999999999999999999999999983 689999999999999999999999999999999999864
No 127
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.78 E-value=5e-19 Score=128.14 Aligned_cols=73 Identities=22% Similarity=0.381 Sum_probs=68.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG--RIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.|| .|..|.|. +|||||+|.+.++|+.||..|||..|+|+.|.|.++
T Consensus 55 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 55 RAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp -CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 37999999999999999999999999 89999983 689999999999999999999999999999999999
Q ss_pred cCC
Q psy10320 73 KGI 75 (262)
Q Consensus 73 ~~~ 75 (262)
...
T Consensus 135 ~~~ 137 (156)
T 3n9u_C 135 TRQ 137 (156)
T ss_dssp CHH
T ss_pred CCC
Confidence 753
No 128
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=9.6e-19 Score=125.68 Aligned_cols=73 Identities=16% Similarity=0.292 Sum_probs=67.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee----CcEEEEEeCChhhHHHHHHHhcCcccCC--ceEEEEEccCCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK----NGFGFVEFEDYRDADDAVYELNGKSLLG--ERVTVEIAKGID 76 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 76 (262)
.+|||+||++.+|+++|+++|++||+|..|.|. +|||||+|.+.++|+.|++.|||..|.| +.|.|++++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 479999999999999999999999999999983 5799999999999999999999999966 999999998764
No 129
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-19 Score=120.66 Aligned_cols=73 Identities=25% Similarity=0.429 Sum_probs=66.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|..||.|..+.+ .+|||||+|.+.++|+.|++.|||..|.|+.|.|+++..
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 15 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp SEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 479999999999999999999999999875544 269999999999999999999999999999999999875
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 95 ~ 95 (98)
T 2cqp_A 95 P 95 (98)
T ss_dssp S
T ss_pred C
Confidence 3
No 130
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=3.6e-19 Score=126.02 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=73.8
Q ss_pred cEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEE
Q psy10320 38 GFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLI 117 (262)
Q Consensus 38 g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (262)
.++|++|++...+..|+..++|....|..- +.+. ...+......+||
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~--------------------------------~~~~~~~~~~~l~ 51 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG--------------------------------RPPPDVEGMTSLK 51 (135)
T ss_dssp -------------------------------CCSC--------------------------------CSCSSGGGCCCEE
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcC--------------------------------CCCCCCCCCCEEE
Confidence 467889999999999998888865444320 0000 0112223356899
Q ss_pred EcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 118 VENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 118 v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
|+|||..+++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|..|+..|+|..+.|+.|.|..+++...
T Consensus 52 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 52 VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp EECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999999999999886 34678999999999999999999999999999999999987544
No 131
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=4e-19 Score=120.52 Aligned_cols=74 Identities=23% Similarity=0.481 Sum_probs=68.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|+.||.. ++..|.|+.|.|.++..
T Consensus 16 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~ 94 (105)
T 2dh8_A 16 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTP 94 (105)
T ss_dssp SSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccC
Confidence 5799999999999999999999999999999984 47999999999999999977 99999999999999886
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 95 ~~~ 97 (105)
T 2dh8_A 95 RGM 97 (105)
T ss_dssp SSC
T ss_pred CCC
Confidence 543
No 132
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.8e-19 Score=119.98 Aligned_cols=71 Identities=24% Similarity=0.399 Sum_probs=65.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.||.|..+.+ .+|||||+|.++++|+.|++.||+..|.|+.|.|.++.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 479999999999999999999999999876555 26899999999999999999999999999999999875
No 133
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-19 Score=114.41 Aligned_cols=68 Identities=25% Similarity=0.599 Sum_probs=64.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
|+|||+|||+.+|+++|+++|+.||+|..|.+. +|||||+|.+.++|+.|+..++ ..++|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 689999999999999999999999999999883 6899999999999999999999 9999999999986
No 134
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=9.8e-19 Score=114.41 Aligned_cols=69 Identities=26% Similarity=0.622 Sum_probs=64.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|+ .+++..|+|+.|.|+++
T Consensus 11 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 11 AGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 5799999999999999999999999999999983 689999999999999999 56888999999999875
No 135
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=8.6e-19 Score=127.55 Aligned_cols=75 Identities=25% Similarity=0.496 Sum_probs=70.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||+|..|.|. +|||||+|.+.++|+.||+.||+..|.|+.|.|.++..
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 118 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAG 118 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5899999999999999999999999999999983 58999999999999999999999999999999999987
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 119 ~~~ 121 (156)
T 1h2v_Z 119 FKE 121 (156)
T ss_dssp CCT
T ss_pred CCC
Confidence 544
No 136
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=6.2e-19 Score=118.71 Aligned_cols=74 Identities=20% Similarity=0.401 Sum_probs=66.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|..||.|.-+.. .+|||||+|.+.++|+.|+..||+..|.|+.|.|.++....
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 15 SKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 589999999999999999999999998843332 37999999999999999999999999999999999998753
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.6e-19 Score=113.73 Aligned_cols=67 Identities=25% Similarity=0.550 Sum_probs=63.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
+|||+|||+.+|+++|+++|+.||+|..|.+. +|||||+|.++++|+.|++ |++..|+|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 69999999999999999999999999999983 5899999999999999995 9999999999999874
No 138
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=115.51 Aligned_cols=73 Identities=29% Similarity=0.444 Sum_probs=68.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
..++|||+|| .+|+++|+++|+.||+|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.|.++....
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3589999996 99999999999999999999985 8999999999999999999999999999999999997653
No 139
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=119.73 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=66.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcE-EEEEeCChhhHHHHHHHhcCcccCC--ceEEEEEccCCC
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGF-GFVEFEDYRDADDAVYELNGKSLLG--ERVTVEIAKGID 76 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~-afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~~~~~ 76 (262)
.|||+||++.+|+++|.++|+.||.|..|.|. .|+ |||+|.+.++|..|++.|||..|.| +.|.|.+++...
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 47899999999999999999999999999884 485 9999999999999999999999988 689999998654
No 140
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.78 E-value=5.7e-19 Score=115.70 Aligned_cols=73 Identities=15% Similarity=0.288 Sum_probs=68.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
..++|||+|||+.+|+++|+++|+.| .|..|.+ .+|||||+|.++++|+.|++.|||..|.|+.|.|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 35899999999999999999999999 9999887 4899999999999999999999999999999999998653
No 141
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=116.37 Aligned_cols=75 Identities=23% Similarity=0.430 Sum_probs=69.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||..+++++|+++|++||.|..+.+. +.++|+|||+|.+.++|.+|++.|||..+.|+.|.|.+++|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 4589999999999999999999999999999876 44678999999999999999999999999999999999875
No 142
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=117.60 Aligned_cols=73 Identities=19% Similarity=0.374 Sum_probs=66.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeE-EEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRD-VIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|..||.|.. |.| .+|||||+|.++++|+.||.. ++..|+|+.|.|.++..
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 579999999999999999999999999987 777 379999999999999999966 99999999999998875
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 94 ~~ 95 (104)
T 1wg5_A 94 AE 95 (104)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 143
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=8.7e-19 Score=128.63 Aligned_cols=137 Identities=18% Similarity=0.188 Sum_probs=72.6
Q ss_pred EEeCChhhHHHHHHHhcCcccC--CceEEEEEccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEc
Q psy10320 42 VEFEDYRDADDAVYELNGKSLL--GERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVE 119 (262)
Q Consensus 42 V~f~~~~~a~~a~~~l~~~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 119 (262)
.+|++.++|+.|+..|++.... |+.+.+.+......... . +.... .............+.++|||+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~--~---------~~~~s-~~~~~~~~~~~~~~~~~l~V~ 78 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSY--E---------RVRNE-DDDELEPGPQRSVEGWILFVT 78 (165)
T ss_dssp -------------------------------------------------------------------CCCCC-CEEEEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCc--c---------ccccC-CCCCCCCCCCCCCCCCEEEEe
Confidence 7899999999999999986554 55544443221100000 0 00000 000000011122346799999
Q ss_pred CCCCCCCHHHHHHHhhcCCceEEEecccC-----CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 120 NLSSRVSWQDLKDFMRQVGEVCYADAHKR-----HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 120 nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-----~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
|||..+++++|.++|.+||.|..+.+... .+|||||+|.+.++|..||..|||..|.|+.|.|.++.++..
T Consensus 79 nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 79 SIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred CCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 99999999999999999999999988733 579999999999999999999999999999999999877644
No 144
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.2e-19 Score=121.03 Aligned_cols=75 Identities=24% Similarity=0.349 Sum_probs=68.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCce----eEEEee----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRI----RDVILK----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v----~~v~i~----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|..||.| ..+.+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 5799999999999999999999999998 455553 79999999999999999999999999999999999987
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 105 ~~~ 107 (115)
T 2cpx_A 105 KKQ 107 (115)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 145
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=2.2e-19 Score=124.20 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=67.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGR---IRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+++|+++|+++|+.||. |..|.|. +|||||+|.+.++|++||+ ||+..|.|+.|.|.++
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 95 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKS 95 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEEC
Confidence 478999999999999999999999998 8888873 7899999999999999997 9999999999999998
Q ss_pred cCCC
Q psy10320 73 KGID 76 (262)
Q Consensus 73 ~~~~ 76 (262)
....
T Consensus 96 ~~~~ 99 (118)
T 2db1_A 96 HRTE 99 (118)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7544
No 146
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.4e-19 Score=119.32 Aligned_cols=73 Identities=25% Similarity=0.563 Sum_probs=66.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|+.||+|..|.+. +|||||+|.+.+ |..|+..|||..|+|+.|.|.++..
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 4799999999999999999999999999999983 689999999999 9999999999999999999999986
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 147
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.6e-18 Score=118.09 Aligned_cols=73 Identities=25% Similarity=0.547 Sum_probs=66.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..+ +..|+|+.|.|.++..
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~ 103 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFP 103 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccC
Confidence 5799999999999999999999999999999983 689999999999999999765 5999999999999986
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 104 ~~ 105 (109)
T 2rs2_A 104 RR 105 (109)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 148
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-19 Score=117.75 Aligned_cols=71 Identities=28% Similarity=0.479 Sum_probs=65.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.+.+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 36899999999999999999999999999999983 689999999999999999999999999998877654
No 149
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.77 E-value=5.5e-19 Score=125.05 Aligned_cols=74 Identities=34% Similarity=0.583 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4799999999999999999999999999999983 67999999999999999999999999999999999986
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 127 ~~ 128 (135)
T 2lea_A 127 GR 128 (135)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.3e-18 Score=125.84 Aligned_cols=73 Identities=48% Similarity=0.747 Sum_probs=69.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 73 ~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 73 DCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp SCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999999999999999994 899999999999999999999999999999999998764
No 151
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.77 E-value=5.3e-19 Score=118.72 Aligned_cols=71 Identities=37% Similarity=0.669 Sum_probs=66.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.|| |..|.|. +|||||+|.+.++|+.|+ .|+|..|.|+.|.|.++.
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~ 96 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVAD 96 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEecc
Confidence 58999999999999999999999999 9999983 689999999999999999 999999999999999987
Q ss_pred CC
Q psy10320 74 GI 75 (262)
Q Consensus 74 ~~ 75 (262)
..
T Consensus 97 ~~ 98 (100)
T 2j76_E 97 QA 98 (100)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 152
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.77 E-value=9.4e-19 Score=116.70 Aligned_cols=74 Identities=20% Similarity=0.341 Sum_probs=68.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe---eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL---KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.||.|..+.. .+|||||+|.+.++|+.|+..|+|..|.|+.|.|.++....
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 579999999999999999999999999888732 47999999999999999999999999999999999997653
No 153
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=114.13 Aligned_cols=71 Identities=21% Similarity=0.359 Sum_probs=66.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.| .|..|.|. +|||||+|.+.++|+.|+. ||+..|.|+.|.|.++...
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 5799999999999999999999999 89999883 6899999999999999998 9999999999999999765
No 154
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.8e-18 Score=119.44 Aligned_cols=74 Identities=28% Similarity=0.553 Sum_probs=68.2
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|+.||.. ++..|+|+.|.|.++..
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 4799999999999999999999999999999983 58999999999999999976 99999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 106 ~~~ 108 (116)
T 1x4b_A 106 REE 108 (116)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 155
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=114.95 Aligned_cols=72 Identities=25% Similarity=0.488 Sum_probs=64.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeC--c-EEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G-FGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~--g-~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|..||.|..|.+.+ + ||||+|.+.++|+.|+. |||..|+|+.|.|.++...
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 46999999999999999999999999999984421 2 99999999999999998 9999999999999977654
No 156
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.6e-18 Score=127.25 Aligned_cols=75 Identities=23% Similarity=0.445 Sum_probs=69.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
+++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|+.||..|||..|.|+.|.|.++..
T Consensus 72 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 151 (165)
T 1rk8_A 72 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 151 (165)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4689999999999999999999999999999984 68999999999999999999999999999999999986
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 152 ~~~ 154 (165)
T 1rk8_A 152 KGP 154 (165)
T ss_dssp CC-
T ss_pred CCC
Confidence 543
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=115.66 Aligned_cols=73 Identities=19% Similarity=0.215 Sum_probs=67.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEE-Eee----CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILK----NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~i~----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|..||.|..| .|. .+.|||+|.+.++|+.|+..|||..|.|+.|.|.++.+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 5799999999999999999999999999999 463 456999999999999999999999999999999999865
No 158
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.77 E-value=1.3e-18 Score=121.71 Aligned_cols=72 Identities=25% Similarity=0.532 Sum_probs=67.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+ .|||..|.|+.|.|.++..
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4799999999999999999999999999999983 689999999999999999 8999999999999999875
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 115 ~ 115 (124)
T 2jwn_A 115 N 115 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 159
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-19 Score=122.22 Aligned_cols=74 Identities=22% Similarity=0.280 Sum_probs=67.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCce-eEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v-~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.| ..|.| .+|||||+|.+.++|+.||+. |+..|.|+.|.|.++..
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 15 KVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred ccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 5799999999999999999999999999 77877 379999999999999999965 99999999999999976
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 94 ~~~ 96 (114)
T 2cpy_A 94 EDM 96 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 160
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=4.2e-18 Score=119.39 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|.++|..||.|..+.+. +..+++|||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 346799999999999999999999999999999886 334899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 776544
No 161
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.76 E-value=2.6e-18 Score=125.33 Aligned_cols=74 Identities=34% Similarity=0.583 Sum_probs=69.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++..
T Consensus 70 ~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 149 (158)
T 2kn4_A 70 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 149 (158)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5799999999999999999999999999999983 68999999999999999999999999999999999986
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 150 ~~ 151 (158)
T 2kn4_A 150 GR 151 (158)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 162
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=122.83 Aligned_cols=74 Identities=20% Similarity=0.352 Sum_probs=68.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeE--EEe--------eCcEEEEEeCChhhHHHHHHHhcCc----ccCCceEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRD--VIL--------KNGFGFVEFEDYRDADDAVYELNGK----SLLGERVT 68 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--v~i--------~~g~afV~f~~~~~a~~a~~~l~~~----~~~g~~l~ 68 (262)
.++|||+|||+.+|+++|+++|+.||.|.. |.| .+|||||+|.+. +|..|+..|||. .|+|+.|.
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~ 101 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTIN 101 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEE
Confidence 579999999999999999999999999966 777 279999999999 999999999999 99999999
Q ss_pred EEEccCCCc
Q psy10320 69 VEIAKGIDR 77 (262)
Q Consensus 69 v~~~~~~~~ 77 (262)
|.++.....
T Consensus 102 V~~a~~~~~ 110 (131)
T 2m2b_A 102 VEFAKGSKR 110 (131)
T ss_dssp CEECCCSCC
T ss_pred EEECCCCCC
Confidence 999987543
No 163
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.1e-18 Score=117.35 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=65.7
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..++|||+|||+.+|+++|+++|+.||.| .|.|. +|||||+|.++++|++|| .+|+..|.|+.|.|.++..
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCC
Confidence 35799999999999999999999999955 88773 789999999999999999 6899999999999998875
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 92 ~~ 93 (102)
T 1wez_A 92 AG 93 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 164
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.8e-18 Score=114.76 Aligned_cols=73 Identities=23% Similarity=0.515 Sum_probs=66.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|+.||. ++..|+|+.|.|.++..
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~ 92 (103)
T 2cqg_A 15 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNS 92 (103)
T ss_dssp CCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCC
Confidence 5799999999999999999999999999999983 5799999999999999997 47799999999999987
Q ss_pred CCc
Q psy10320 75 IDR 77 (262)
Q Consensus 75 ~~~ 77 (262)
...
T Consensus 93 ~~~ 95 (103)
T 2cqg_A 93 KQS 95 (103)
T ss_dssp TCC
T ss_pred CCc
Confidence 543
No 165
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=118.09 Aligned_cols=72 Identities=25% Similarity=0.499 Sum_probs=67.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCccc--------CCceE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSL--------LGERV 67 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~--------~g~~l 67 (262)
.++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|+.|+..|||..| .++.|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l 104 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL 104 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence 5899999999999999999999999999999983 58999999999999999999999999 57889
Q ss_pred EEEEccC
Q psy10320 68 TVEIAKG 74 (262)
Q Consensus 68 ~v~~~~~ 74 (262)
.|.++.+
T Consensus 105 ~v~~a~p 111 (114)
T 1x5o_A 105 LCKFSGP 111 (114)
T ss_dssp EEEECCC
T ss_pred eEEccCC
Confidence 9998874
No 166
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-17 Score=111.20 Aligned_cols=81 Identities=25% Similarity=0.364 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc--cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH--KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
....++|||+|||..+++++|+++|++||.|..+.+. ...+++|||+|.+.++|..|++.||+..+.|+.|.|.++.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 3446799999999999999999999999999998886 34578999999999999999999999999999999999877
Q ss_pred CCC
Q psy10320 188 RGG 190 (262)
Q Consensus 188 ~~~ 190 (262)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 167
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=115.21 Aligned_cols=74 Identities=30% Similarity=0.447 Sum_probs=66.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.|+.|.-+.. .+|||||+|.+.++|+.||..||+..|.|+.|.|.++....
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 15 SKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp CSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 589999999999999999999999976655543 26899999999999999999999999999999999998653
No 168
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-17 Score=114.06 Aligned_cols=78 Identities=19% Similarity=0.295 Sum_probs=71.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
..+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|.+|++.|+|..+.|+.|.|..+.+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 5699999999999999999999999999988886 345799999999999999999999999999999999999865
Q ss_pred CC
Q psy10320 189 GG 190 (262)
Q Consensus 189 ~~ 190 (262)
..
T Consensus 87 ~~ 88 (116)
T 2fy1_A 87 SF 88 (116)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 169
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.75 E-value=2.9e-18 Score=122.54 Aligned_cols=70 Identities=34% Similarity=0.597 Sum_probs=66.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5799999999999999999999999999999983 789999999999999999999999999999999875
No 170
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.75 E-value=1.9e-18 Score=133.08 Aligned_cols=73 Identities=22% Similarity=0.339 Sum_probs=68.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC--ceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG--RIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G--~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.|| .|..|.|. +|||||+|.+.++|++||+.||+..|.|+.|.|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 47899999999999999999999999 99999983 689999999999999999999999999999999998
Q ss_pred cCC
Q psy10320 73 KGI 75 (262)
Q Consensus 73 ~~~ 75 (262)
...
T Consensus 148 ~~~ 150 (229)
T 3q2s_C 148 NKQ 150 (229)
T ss_dssp CHH
T ss_pred CCC
Confidence 754
No 171
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=5.3e-19 Score=119.03 Aligned_cols=73 Identities=26% Similarity=0.453 Sum_probs=65.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.||.|..+.+ ++|||||+|.+.++|+.||+ |||..|.|+.|.|.++...
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 579999999999999999999999998766222 37999999999999999997 9999999999999999764
Q ss_pred C
Q psy10320 76 D 76 (262)
Q Consensus 76 ~ 76 (262)
.
T Consensus 96 ~ 96 (101)
T 1fj7_A 96 D 96 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 172
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=5.5e-18 Score=110.98 Aligned_cols=70 Identities=30% Similarity=0.544 Sum_probs=60.3
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcc--cCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKS--LLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~--~~g~~l~v~~~~~~ 75 (262)
..++|||+|||+++|+++|+++|++||.|.+|.|. +|||||+|.+.++|+. |++.. +.|+.|.|.++.++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC--
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCC
Confidence 36899999999999999999999999999999995 7999999999999983 45654 56999999998764
No 173
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-18 Score=115.79 Aligned_cols=71 Identities=30% Similarity=0.438 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.| .|..|.|. +|||||+|.++++|++|| .||+..|+|+.|.|..+...
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 3689999999999999999999999 89999883 799999999999999999 89999999999999888654
No 174
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.75 E-value=1.2e-18 Score=110.59 Aligned_cols=67 Identities=19% Similarity=0.491 Sum_probs=62.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
||||+|||+.+|+++|+++|+.||+|..|.+. +|||||+|.++++|+.|++ +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 69999999999999999999999999999883 6899999999999999995 5899999999999874
No 175
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.3e-18 Score=122.53 Aligned_cols=72 Identities=22% Similarity=0.281 Sum_probs=66.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGR---IRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+++|+++|+++|+.||. |..|.|. +|||||+|.+.++|++||+ ||+..|.|+.|.|.++
T Consensus 44 ~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a 122 (136)
T 2hgl_A 44 GFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKS 122 (136)
T ss_dssp TCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEEC
Confidence 479999999999999999999999999 7888873 6899999999999999997 9999999999999998
Q ss_pred cCC
Q psy10320 73 KGI 75 (262)
Q Consensus 73 ~~~ 75 (262)
...
T Consensus 123 ~~~ 125 (136)
T 2hgl_A 123 HRT 125 (136)
T ss_dssp CHH
T ss_pred ChH
Confidence 654
No 176
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.6e-19 Score=122.23 Aligned_cols=72 Identities=25% Similarity=0.424 Sum_probs=65.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeE-EEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRD-VIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|..||.|.. +.+ .+|||||+|.+.++|+.||. ||+..|+|+.|.|.++..
T Consensus 25 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 25 GFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp CCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 479999999999999999999999999876 333 37999999999999999997 999999999999999875
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 104 ~ 104 (124)
T 1wel_A 104 K 104 (124)
T ss_dssp H
T ss_pred H
Confidence 4
No 177
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.75 E-value=3.6e-18 Score=126.34 Aligned_cols=73 Identities=23% Similarity=0.470 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
+++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.|+++...
T Consensus 88 ~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 88 GAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp CEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 5899999999999999999999999999999993 699999999999999999999999999999999999764
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.75 E-value=5.1e-18 Score=110.97 Aligned_cols=68 Identities=22% Similarity=0.613 Sum_probs=64.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC----C-------ceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGY----G-------RIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~----G-------~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
.++|||+|||+.+|+++|+++|+.| | .|..+.+. +|||||+|.++++|+.|+ .|||..|.|+.|.|
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 84 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 84 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEE
Confidence 5799999999999999999999999 8 89999985 899999999999999999 99999999999998
Q ss_pred EE
Q psy10320 70 EI 71 (262)
Q Consensus 70 ~~ 71 (262)
+.
T Consensus 85 ~r 86 (87)
T 2hzc_A 85 RR 86 (87)
T ss_dssp EC
T ss_pred eC
Confidence 73
No 179
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.7e-17 Score=110.37 Aligned_cols=82 Identities=27% Similarity=0.312 Sum_probs=73.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
..+..+|||+|||..+++++|.++|++||.|..+.+. +..+++|||+|.+.++|.+|+..|||..+.|+.|.|..
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3446799999999999999999999999999999887 34579999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy10320 185 DKPRGGG 191 (262)
Q Consensus 185 ~~~~~~~ 191 (262)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9865443
No 180
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.1e-17 Score=108.47 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=73.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
...+|||+|||..+++++|+++|+.||.|..+.+. +..+++|||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPST 86 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 36799999999999999999999999999999886 4467999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy10320 187 PRGGG 191 (262)
Q Consensus 187 ~~~~~ 191 (262)
++...
T Consensus 87 ~~~~~ 91 (99)
T 1whw_A 87 IKKEA 91 (99)
T ss_dssp CCSTT
T ss_pred CCccc
Confidence 76543
No 181
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=122.50 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=67.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEe-----eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRD--------VIL-----KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTV 69 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v~i-----~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v 69 (262)
+++|||+|||+.+|+++|+++|..||.|.. |.+ .+|||||+|.+.++|..|+..|||..|.|+.|.|
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V 124 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVV 124 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 579999999999999999999999998865 433 3789999999999999999999999999999999
Q ss_pred EEccCCC
Q psy10320 70 EIAKGID 76 (262)
Q Consensus 70 ~~~~~~~ 76 (262)
.++....
T Consensus 125 ~~a~~~~ 131 (143)
T 3egn_A 125 QFARSAR 131 (143)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9997643
No 182
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.3e-17 Score=107.93 Aligned_cols=80 Identities=25% Similarity=0.356 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||..+++++|+++|++||.|..+.+.. ..+++|||+|.+.++|..|+..|||..+.|+.|.|.++.+
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 84 (95)
T 2dnz_A 5 SSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTE 84 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccc
Confidence 56999999999999999999999999999998863 3578999999999999999999999999999999999987
Q ss_pred CCCCC
Q psy10320 188 RGGGR 192 (262)
Q Consensus 188 ~~~~~ 192 (262)
+....
T Consensus 85 ~~~~~ 89 (95)
T 2dnz_A 85 RLDGG 89 (95)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 75543
No 183
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=4.1e-17 Score=112.43 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|+.||.|..+.+.. ..+++|||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 3457999999999999999999999999999888763 34689999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 876543
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=9.7e-18 Score=116.20 Aligned_cols=72 Identities=29% Similarity=0.454 Sum_probs=67.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
..++|||+|| ++|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|++.|||..|.|+.|.|.++...
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 3589999996 79999999999999999999985 899999999999999999999999999999999999865
No 185
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=1.1e-17 Score=113.61 Aligned_cols=78 Identities=31% Similarity=0.543 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCC-ceEEEecc-cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAH-KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
...++|||+|||+.+++++|+++|++|| .|..+.+. ..++|+|||+|.+.++|.+|++.|||..+.|+.|.|..+...
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 3467999999999999999999999999 89999885 567899999999999999999999999999999999998643
No 186
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.7e-17 Score=108.70 Aligned_cols=81 Identities=28% Similarity=0.371 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|++||.|..+.+.. ..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 3467999999999999999999999999999998863 45789999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.+....
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 876543
No 187
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=117.36 Aligned_cols=72 Identities=17% Similarity=0.154 Sum_probs=66.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCc---eeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGR---IRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~---v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|..||. |..|.|. +|||||+|.+.++|+.||. |++..|+|+.|.|.++
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a 89 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEI 89 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEEC
Confidence 579999999999999999999999998 8888883 7899999999999999997 9999999999999998
Q ss_pred cCC
Q psy10320 73 KGI 75 (262)
Q Consensus 73 ~~~ 75 (262)
...
T Consensus 90 ~~~ 92 (107)
T 2lmi_A 90 NNE 92 (107)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 188
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=5.9e-17 Score=106.52 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGGG 191 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~~ 191 (262)
+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|..|+..|+|..+.|+.|.|.++.++...
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 46799999999999999999999999999999987 789999999999999999999999999999999999876543
No 189
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.4e-17 Score=109.95 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=70.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCC--cccCCceEEEeecCCCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDN--AELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g--~~~~g~~~~v~~~~~~~~ 190 (262)
..+|||+|||+.+++++|+++|++||.|..+.+... +|+|||+|++.++|..|++.|++ ..+.|+.|.|.++.++.-
T Consensus 16 ~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~ 94 (105)
T 1sjq_A 16 SRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKEL 94 (105)
T ss_dssp CCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCC
Confidence 569999999999999999999999999999998864 79999999999999999998864 789999999999876543
No 190
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.7e-17 Score=107.48 Aligned_cols=80 Identities=16% Similarity=0.425 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.+.++|||+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++ |++..+.|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 346799999999999999999999999999999886 3468999999999999999998 9999999999999999
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.++...
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876543
No 191
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-16 Score=108.46 Aligned_cols=82 Identities=24% Similarity=0.425 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccC------CCceEEEEecCHHHHHHHHHHh-CCcccCCceEEE
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR------HRNEGVVEFESSSDMKKALDKL-DNAELNGRRIRL 182 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~------~~~~~~v~f~~~~~a~~a~~~l-~g~~~~g~~~~v 182 (262)
.....+|||+|||..+++++|+++|..||.|..+.+... .+++|||+|.+.++|..|+..| +|..+.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 344679999999999999999999999999999998644 4899999999999999999999 999999999999
Q ss_pred eecCCCCCC
Q psy10320 183 IEDKPRGGG 191 (262)
Q Consensus 183 ~~~~~~~~~ 191 (262)
.++.+....
T Consensus 92 ~~a~~~~~~ 100 (107)
T 2cph_A 92 EWADSEVTV 100 (107)
T ss_dssp EECCCCCCC
T ss_pred EeCCCCCCC
Confidence 999876543
No 192
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.5e-18 Score=111.46 Aligned_cols=74 Identities=26% Similarity=0.388 Sum_probs=63.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
+..++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|++|+.. ...+.|..|.|.++.+..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 357899999999999999999999999999999995 79999999999999765321 345689999999887653
No 193
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-16 Score=107.83 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc---CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK---RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
....+|||+|||..+++++|+++|++||.|..+.+.. ..+++|||+|.+.++|..|+..|+|..+.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 3467999999999999999999999999999998873 3578999999999999999999999999999999999987
Q ss_pred CCC
Q psy10320 188 RGG 190 (262)
Q Consensus 188 ~~~ 190 (262)
...
T Consensus 93 ~~~ 95 (103)
T 2cqi_A 93 PSS 95 (103)
T ss_dssp TTC
T ss_pred Ccc
Confidence 644
No 194
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.4e-17 Score=106.06 Aligned_cols=72 Identities=17% Similarity=0.230 Sum_probs=68.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
..-|+|+||++.+++++|+++|.+||+|..+++.. ++|||||+|.+.++|..|++.||+..+.|+.|.|+.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 34799999999999999999999999999998865 7999999999999999999999999999999999887
No 195
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5.1e-17 Score=109.66 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|++||.|..+.+.. ..+++|||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 3467999999999999999999999999999998863 34789999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.++...
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876544
No 196
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-16 Score=107.12 Aligned_cols=81 Identities=27% Similarity=0.382 Sum_probs=73.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc---CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK---RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
....+|||+|||..+++++|+++|+.||.|..+.+.. ..+++|||+|.+.++|..|+..|+|..+.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 3467999999999999999999999999999998873 3589999999999999999999999999999999999987
Q ss_pred CCCC
Q psy10320 188 RGGG 191 (262)
Q Consensus 188 ~~~~ 191 (262)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cq3_A 93 RVMT 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 6543
No 197
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=3.6e-17 Score=108.01 Aligned_cols=76 Identities=16% Similarity=0.254 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcc--cCCceEEEeecCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE--LNGRRIRLIEDKPR 188 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~--~~g~~~~v~~~~~~ 188 (262)
+..+|||+|||..+++++|.++|++||.|..+.+.. .+|+|||+|++.++|..|++.|++.. +.|+.|.|.+++++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 467999999999999999999999999999998874 57999999999999999999999876 78999999998764
No 198
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=1.4e-16 Score=107.42 Aligned_cols=77 Identities=21% Similarity=0.364 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGGG 191 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~~ 191 (262)
+..+|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|+..|+|..+.|+.|.|.++.+....
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 35699999999999999999999999999999886 679999999999999999999999999999999999876543
No 199
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=9e-17 Score=108.45 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc---CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK---RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
..++|||+|||..+++++|+++|+.||.|..+.+.. ..+++|||+|.+.++|..|+..|+|..+.|+.|.|.++.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 93 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccc
Confidence 467999999999999999999999999999998873 46789999999999999999999999999999999999876
Q ss_pred CCCC
Q psy10320 189 GGGR 192 (262)
Q Consensus 189 ~~~~ 192 (262)
....
T Consensus 94 ~~~~ 97 (103)
T 2d9p_A 94 EERQ 97 (103)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 5433
No 200
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=2.8e-17 Score=111.91 Aligned_cols=76 Identities=24% Similarity=0.239 Sum_probs=70.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||..+++++|+++|++||.|..+.+. +.++|+|||+|.+.++|.+|++.|||..+.|+.|.|..+..
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 5699999999999999999999999999999886 45679999999999999999999999999999999999864
Q ss_pred C
Q psy10320 188 R 188 (262)
Q Consensus 188 ~ 188 (262)
.
T Consensus 86 ~ 86 (110)
T 3s8s_A 86 G 86 (110)
T ss_dssp T
T ss_pred C
Confidence 3
No 201
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.3e-18 Score=121.69 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=66.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+++|+++|+++|+.|| |..|.|. +|||||+|.++++|++|| .+|+..|.|+.|.|.++...
T Consensus 46 ~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 46 GHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCC
Confidence 46999999999999999999999999 6688883 789999999999999999 89999999999999988765
Q ss_pred Cc
Q psy10320 76 DR 77 (262)
Q Consensus 76 ~~ 77 (262)
..
T Consensus 124 ~~ 125 (139)
T 2hgn_A 124 GA 125 (139)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 202
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-16 Score=106.23 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccC--CceEEEeecCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELN--GRRIRLIEDKPRG 189 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~--g~~~~v~~~~~~~ 189 (262)
+.++|||+|||..+++++|+++|++||.|..+.+... +++|||+|.+.++|.+|++.|||..+. |+.|.|.++.++.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 3579999999999999999999999999999988754 789999999999999999999999999 9999999998764
Q ss_pred C
Q psy10320 190 G 190 (262)
Q Consensus 190 ~ 190 (262)
.
T Consensus 95 ~ 95 (97)
T 1why_A 95 S 95 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 203
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=9.1e-18 Score=113.16 Aligned_cols=73 Identities=23% Similarity=0.511 Sum_probs=67.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+. ++..++|+.|.|.++..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 35899999999999999999999999999999984 5999999999999999996 99999999999999876
Q ss_pred CC
Q psy10320 75 ID 76 (262)
Q Consensus 75 ~~ 76 (262)
..
T Consensus 86 ~~ 87 (102)
T 2xs2_A 86 KQ 87 (102)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 204
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=2e-16 Score=108.92 Aligned_cols=81 Identities=22% Similarity=0.337 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|..||.|..+.+.. ..+++|||+|.+.++|..|++.|+|..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 3467999999999999999999999999999998863 34789999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.++...
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 876543
No 205
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-16 Score=107.99 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=71.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc------cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH------KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~------~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
.+.++|||+|||..+++++|+++|+.|| |..+.+. +..+|+|||+|.+.++|.+|| .|++..+.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3467999999999999999999999999 9999887 345789999999999999999 9999999999999999
Q ss_pred cCCCCCC
Q psy10320 185 DKPRGGG 191 (262)
Q Consensus 185 ~~~~~~~ 191 (262)
+.++...
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876543
No 206
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.7e-17 Score=109.25 Aligned_cols=81 Identities=28% Similarity=0.375 Sum_probs=73.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
+..+|||+|||..+++++|+++|+.||.|..+.+. +..+++|||+|.+.++|..|++.|+|..+.|+.|.|.++.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 90 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 90 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCC
Confidence 46799999999999999999999999999999886 3468999999999999999999999999999999999998
Q ss_pred CCCCCC
Q psy10320 187 PRGGGR 192 (262)
Q Consensus 187 ~~~~~~ 192 (262)
+.....
T Consensus 91 ~~~~~~ 96 (102)
T 2cqb_A 91 PMRIKE 96 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 765443
No 207
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=5.4e-17 Score=108.28 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCc--ccCCceEEEeecCCC
Q psy10320 112 SDHRLIVENLSS-RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA--ELNGRRIRLIEDKPR 188 (262)
Q Consensus 112 ~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~--~~~g~~~~v~~~~~~ 188 (262)
+..+|||+|||+ .+++++|+++|++||.|..+.++. .+++|||+|++.++|..|++.|++. .+.|+.|.|.++.+.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 467999999999 999999999999999999999875 3689999999999999999999865 599999999999754
Q ss_pred C
Q psy10320 189 G 189 (262)
Q Consensus 189 ~ 189 (262)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 208
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.9e-17 Score=109.16 Aligned_cols=81 Identities=26% Similarity=0.392 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|++||.|..+.+.. ..+++|||+|.+.++|..|++.|||..+.|+.|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3467999999999999999999999999999998863 35789999999999999999999999999999999998
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.+....
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 776543
No 209
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.72 E-value=1.3e-16 Score=108.13 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCC---ceEEEee
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNG---RRIRLIE 184 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g---~~~~v~~ 184 (262)
...+|||+|||..+++++|+++|+.||.|..+.+.. ..+++|||+|.+.++|..|+..|+|..+.| +.|.|.+
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 367999999999999999999999999999998873 347899999999999999999999999998 9999999
Q ss_pred cCCCCCC
Q psy10320 185 DKPRGGG 191 (262)
Q Consensus 185 ~~~~~~~ 191 (262)
+.+....
T Consensus 94 a~~~~~~ 100 (105)
T 2dnh_A 94 ADTDKES 100 (105)
T ss_dssp SCSSCCC
T ss_pred CccCccc
Confidence 9876543
No 210
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.2e-17 Score=113.41 Aligned_cols=73 Identities=18% Similarity=0.282 Sum_probs=64.5
Q ss_pred ccceEEEcCC----CCCCCHHHHHHHHhcCCceeEEEe--------eCcEEEEEeCC----hhh----HHHHHH--HhcC
Q psy10320 2 VGTKVYIGGL----PYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFED----YRD----ADDAVY--ELNG 59 (262)
Q Consensus 2 ~~~~l~V~nl----~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~----~~~----a~~a~~--~l~~ 59 (262)
|+++|||+|| |+.+++++|+++|+.||+|..|.+ ++|||||+|.+ +++ |..|+. .|+|
T Consensus 1 mp~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng 80 (136)
T 2j8a_A 1 MSCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSG 80 (136)
T ss_dssp -CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTC
T ss_pred CCcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcC
Confidence 5789999999 999999999999999999999998 48999999996 444 788988 7899
Q ss_pred cccCCceEEEEEccC
Q psy10320 60 KSLLGERVTVEIAKG 74 (262)
Q Consensus 60 ~~~~g~~l~v~~~~~ 74 (262)
..|+|+.|.|.+...
T Consensus 81 ~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 81 CFIMGFKFEVILNKH 95 (136)
T ss_dssp EEETTEEEEEEECCT
T ss_pred CeecCcEEEEEECcc
Confidence 999999999998764
No 211
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.72 E-value=3e-17 Score=112.96 Aligned_cols=77 Identities=21% Similarity=0.347 Sum_probs=70.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc---CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK---RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
..+|||+|||..+++++|+++|++||.|..+.+.. .++|||||+|.+.++|..|++.|+|..++|+.|.|..+.++.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 34899999999999999999999999999998873 347899999999999999999999999999999999987653
No 212
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-16 Score=107.64 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhC------CcccCCce
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLD------NAELNGRR 179 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~------g~~~~g~~ 179 (262)
.+..+|||+|||..+++++|+++|..||.|..+.+. +..+++|||+|.+.++|..|+..|+ +..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 346799999999999999999999999999999887 3468999999999999999999999 99999999
Q ss_pred EEEeecCCCCCC
Q psy10320 180 IRLIEDKPRGGG 191 (262)
Q Consensus 180 ~~v~~~~~~~~~ 191 (262)
|.|.++.++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999876443
No 213
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-16 Score=106.83 Aligned_cols=79 Identities=18% Similarity=0.292 Sum_probs=72.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
...+|||+|||..+++++|.++|+.||.|..+.+.. ..+++|||+|.+.++|..|++.|+|..+.|+.|.|.++.+
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNS 95 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence 356999999999999999999999999999998873 4468999999999999999999999999999999999987
Q ss_pred CCC
Q psy10320 188 RGG 190 (262)
Q Consensus 188 ~~~ 190 (262)
+..
T Consensus 96 ~~~ 98 (100)
T 2do4_A 96 GPS 98 (100)
T ss_dssp CSC
T ss_pred CCC
Confidence 643
No 214
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.5e-17 Score=108.47 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=71.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEE-ecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYA-DAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~-~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
.++|||+|||..+++++|.++|+.||.|..+ .+. +..+++|||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAF 84 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence 5699999999999999999999999999877 665 3458999999999999999999999999999999999998
Q ss_pred CCCCCC
Q psy10320 187 PRGGGR 192 (262)
Q Consensus 187 ~~~~~~ 192 (262)
++....
T Consensus 85 ~~~~~~ 90 (96)
T 1x5t_A 85 KKDSKG 90 (96)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 765443
No 215
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=106.89 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
....+|||+|||..+++++|+++|.+||.|....+.+..+++|||+|.+.++|..|+..|||..+.|+.|.|..+.++.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3467999999999999999999999999986223336778999999999999999999999999999999999987754
No 216
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.8e-18 Score=117.13 Aligned_cols=72 Identities=18% Similarity=0.233 Sum_probs=64.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCce----eEEEe-------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRI----RDVIL-------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEI 71 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v----~~v~i-------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 71 (262)
.++|||+|||+++|+++|+++|+.||.| ..|.| ++|||||+|.+.++|++||+. |+..|.|+.|.|..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFR 101 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEE
Confidence 4799999999999999999999999975 56776 379999999999999999964 99999999999988
Q ss_pred ccCC
Q psy10320 72 AKGI 75 (262)
Q Consensus 72 ~~~~ 75 (262)
+...
T Consensus 102 a~~~ 105 (123)
T 2dha_A 102 STAA 105 (123)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8644
No 217
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-16 Score=105.14 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=70.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHh--CCcccCCceEEEeecCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKL--DNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l--~g~~~~g~~~~v~~~~~~~ 189 (262)
+..+|||+|||..+++++|+++|++||.|..+.+... +|+|||+|++.++|..|++.| ++..+.|+.|.|.++.++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 4679999999999999999999999999999987754 899999999999999999977 4678999999999998654
Q ss_pred C
Q psy10320 190 G 190 (262)
Q Consensus 190 ~ 190 (262)
-
T Consensus 93 ~ 93 (101)
T 2cq1_A 93 L 93 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 218
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-17 Score=109.36 Aligned_cols=77 Identities=13% Similarity=0.249 Sum_probs=68.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCC-ceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhC-CcccCCceEEEeecC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLD-NAELNGRRIRLIEDK 186 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g-~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~-g~~~~g~~~~v~~~~ 186 (262)
++|||+|||..+++++|+++|++|| .|..+.+. +.++|+|||+|.+.++|.+|++.++ +..++|+.|.|.++.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 5899999999999999999999999 78888776 4578999999999999999999874 568999999999998
Q ss_pred CCCC
Q psy10320 187 PRGG 190 (262)
Q Consensus 187 ~~~~ 190 (262)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 219
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.4e-16 Score=104.74 Aligned_cols=77 Identities=25% Similarity=0.289 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcC--CceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQV--GEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.+.++|||+|||..+++++|+++|++| |.|..+.+. +++|||+|.+.++|..|+..|+|..+.|+.|.|.++.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 346799999999999999999999999 899988874 689999999999999999999999999999999999876
Q ss_pred CC
Q psy10320 189 GG 190 (262)
Q Consensus 189 ~~ 190 (262)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 220
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.71 E-value=7.4e-17 Score=104.91 Aligned_cols=76 Identities=29% Similarity=0.400 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.+..+|||+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|..|++.|||..+.|+.|.|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346799999999999999999999999999999885 336899999999999999999999999999999999886
Q ss_pred C
Q psy10320 186 K 186 (262)
Q Consensus 186 ~ 186 (262)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 221
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-16 Score=105.88 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHH----HHhhcCCceEEEecccC--CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 112 SDHRLIVENLSSRVSWQDLK----DFMRQVGEVCYADAHKR--HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~~~--~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
..++|||+|||..+++++|+ ++|++||.|..+.+... .+++|||+|.+.++|.+|++.|||..+.|+.|.|..+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a 87 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA 87 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 35799999999999999999 99999999999998732 2789999999999999999999999999999999999
Q ss_pred CCCCC
Q psy10320 186 KPRGG 190 (262)
Q Consensus 186 ~~~~~ 190 (262)
.+...
T Consensus 88 ~~~~~ 92 (96)
T 2dgx_A 88 TGASG 92 (96)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 76543
No 222
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.71 E-value=1.8e-17 Score=114.93 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=63.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCcee--EEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIR--DVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~--~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+++|+++|+++|+.| .|. .|.|. +|||||+|.++++|++||+ +++..|.|+.|.|.++.
T Consensus 42 ~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 42 DGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSS 119 (126)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECC
Confidence 4799999999999999999999999 566 78873 7999999999999999995 58899999999998875
Q ss_pred C
Q psy10320 74 G 74 (262)
Q Consensus 74 ~ 74 (262)
.
T Consensus 120 ~ 120 (126)
T 2hgm_A 120 Q 120 (126)
T ss_dssp H
T ss_pred H
Confidence 4
No 223
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.71 E-value=2.4e-16 Score=107.62 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 111 RSDHRLIVENLSSR-VSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 111 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
....+|||+|||.. +++++|+++|++||.|..+.+ .+++|||+|.+.++|..|+..|+|..++|+.|.|.++.+..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 34579999999999 999999999999999999988 68999999999999999999999999999999999987543
Q ss_pred C
Q psy10320 190 G 190 (262)
Q Consensus 190 ~ 190 (262)
.
T Consensus 102 ~ 102 (110)
T 1wf1_A 102 P 102 (110)
T ss_dssp S
T ss_pred C
Confidence 3
No 224
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=104.23 Aligned_cols=76 Identities=24% Similarity=0.405 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
...+|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|..|+..|+|..+.|+.|.|..+.+...
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV---KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 36699999999999999999999999999999986 56999999999999999999999999999999999987643
No 225
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=2.2e-16 Score=112.52 Aligned_cols=84 Identities=18% Similarity=0.317 Sum_probs=74.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 108 PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 108 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
+......+|||+|||..+++++|.++|+.||.|..+.+. +..+|+|||+|.+.++|.+|++.|+|..+.|+.|.|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344556799999999999999999999999999999886 234789999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy10320 183 IEDKPRGGG 191 (262)
Q Consensus 183 ~~~~~~~~~ 191 (262)
..+.+....
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876443
No 226
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.71 E-value=4.7e-17 Score=106.34 Aligned_cols=77 Identities=22% Similarity=0.327 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
+..+|||+|||..+++++|+++|++||.|..+.+.. ..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 367999999999999999999999999999998863 357899999999999999999999999999999999987
Q ss_pred CC
Q psy10320 187 PR 188 (262)
Q Consensus 187 ~~ 188 (262)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 227
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2e-16 Score=104.88 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=69.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.+..+|||+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|..|++.|+|..+.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 346799999999999999999999999999999886 345789999999999999999999999999999999886
Q ss_pred C
Q psy10320 186 K 186 (262)
Q Consensus 186 ~ 186 (262)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 228
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.71 E-value=3.8e-17 Score=125.01 Aligned_cols=74 Identities=26% Similarity=0.417 Sum_probs=69.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe------eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL------KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGID 76 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~~ 76 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.| .+|||||+|.+.++|++||+.|||..|+|+.|.|.++....
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 368999999999999999999999999999998 37999999999999999999999999999999999997653
No 229
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-16 Score=107.15 Aligned_cols=79 Identities=28% Similarity=0.420 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
...++|||+|||..+++++|+++|.+||.|..+.+.. ..+++|||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 3367999999999999999999999999999988873 346899999999999999999999999999999999987
Q ss_pred CCC
Q psy10320 187 PRG 189 (262)
Q Consensus 187 ~~~ 189 (262)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
No 230
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=7.5e-19 Score=121.35 Aligned_cols=75 Identities=24% Similarity=0.383 Sum_probs=68.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeE--------EEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCce
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRD--------VILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGER 66 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~--------v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 66 (262)
.++|||+|||+.+|+++|+++|+.||.|.. |.|. +|||||+|.+.++|+.|+..|||..|.|+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 579999999999999999999999999988 6662 689999999999999999999999999999
Q ss_pred EEEEEccCCCc
Q psy10320 67 VTVEIAKGIDR 77 (262)
Q Consensus 67 l~v~~~~~~~~ 77 (262)
|.|.++.....
T Consensus 87 l~V~~a~~~~~ 97 (116)
T 2lcw_A 87 IKVSFATRRAD 97 (116)
Confidence 99999986543
No 231
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=9.3e-17 Score=106.07 Aligned_cols=80 Identities=31% Similarity=0.532 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc---CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK---RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~---~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
.+..+|||+|||..+++++|+++|++||.|..+.+.. ..+++|||+|.+.++|..|+..|+|..+.|+.|.|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3467999999999999999999999999999998873 4578999999999999999999999999999999999877
Q ss_pred CCC
Q psy10320 188 RGG 190 (262)
Q Consensus 188 ~~~ 190 (262)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 644
No 232
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.71 E-value=2e-16 Score=107.33 Aligned_cols=80 Identities=15% Similarity=0.251 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCccc---CCceEEE
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAEL---NGRRIRL 182 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~---~g~~~~v 182 (262)
....+|||+|||..+++++|+++|++||.|..+.+.. ..+++|||+|.+.++|..|+..|+|..+ .|+.|.|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 3467999999999999999999999999999998873 3579999999999999999999999988 8999999
Q ss_pred eecCCCCC
Q psy10320 183 IEDKPRGG 190 (262)
Q Consensus 183 ~~~~~~~~ 190 (262)
.++.+...
T Consensus 91 ~~a~~~~~ 98 (106)
T 2dgp_A 91 KPADSESR 98 (106)
T ss_dssp EECCCCSC
T ss_pred EECCcccc
Confidence 99987644
No 233
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=6.2e-17 Score=108.82 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=71.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
++|||+|||..+++++|+++|++||.|..+.+....+++|||+|.+.++|.+|++.|+|..+.|+.|.|..+.+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 37999999999999999999999999999988866789999999999999999999999999999999999987653
No 234
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=2.7e-17 Score=126.06 Aligned_cols=73 Identities=22% Similarity=0.338 Sum_probs=67.7
Q ss_pred cceEEEcCCCCCC---------CHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCccc---------
Q psy10320 3 GTKVYIGGLPYGV---------RERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSL--------- 62 (262)
Q Consensus 3 ~~~l~V~nl~~~~---------t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~--------- 62 (262)
.+||||+||+..+ |+++|+++|+.||+|.+|.|. +|||||+|.+.++|+.|++.|+|..|
T Consensus 134 ~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~ 213 (240)
T 3u1l_A 134 NKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWD 213 (240)
T ss_dssp CCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGG
T ss_pred CceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEecccccccc
Confidence 4799999999998 799999999999999999984 89999999999999999999999999
Q ss_pred ---CCceEEEEEccCC
Q psy10320 63 ---LGERVTVEIAKGI 75 (262)
Q Consensus 63 ---~g~~l~v~~~~~~ 75 (262)
.|+.|.|.|+...
T Consensus 214 ~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 214 DRREGTGLLVKWANED 229 (240)
T ss_dssp GGGGSCCCEEEECC--
T ss_pred ccCCCCEEEEEEccCC
Confidence 8999999999864
No 235
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=106.87 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=71.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc--------CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK--------RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~--------~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
.++|||+|||..+++++|+++|+.||.|..+.+.. ..+++|||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 56999999999999999999999999999998862 3468999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy10320 185 DKPRGGG 191 (262)
Q Consensus 185 ~~~~~~~ 191 (262)
+.+....
T Consensus 85 a~~~~~~ 91 (98)
T 2cpf_A 85 SERATKP 91 (98)
T ss_dssp SSCSSCC
T ss_pred ccCCCCC
Confidence 9776443
No 236
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.70 E-value=1.5e-16 Score=105.88 Aligned_cols=77 Identities=14% Similarity=0.199 Sum_probs=71.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||..+++++|.++|++||.|..+.+. +..+|+|||+|.+.++|..|++.|+|..++|+.|.|.++.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5699999999999999999999999999999887 34589999999999999999999999999999999999877
Q ss_pred CC
Q psy10320 188 RG 189 (262)
Q Consensus 188 ~~ 189 (262)
..
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 237
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=105.72 Aligned_cols=77 Identities=29% Similarity=0.386 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.+..+|||+|||..+++++|+++|+.||.|..+.+. +..+++|||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 346799999999999999999999999999999886 345789999999999999999999999999999999987
Q ss_pred CC
Q psy10320 186 KP 187 (262)
Q Consensus 186 ~~ 187 (262)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 238
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.70 E-value=2.6e-16 Score=106.11 Aligned_cols=80 Identities=21% Similarity=0.260 Sum_probs=71.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
..+.++|||+|||..+++++|+++|+.|| |..+.+. +..+|+|||+|.+.++|..|+ .|+|..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 34467999999999999999999999997 9888886 335789999999999999999 8999999999999999
Q ss_pred cCCCCCC
Q psy10320 185 DKPRGGG 191 (262)
Q Consensus 185 ~~~~~~~ 191 (262)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2dng_A 90 AEGRKQD 96 (103)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9876543
No 239
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=1.2e-16 Score=112.01 Aligned_cols=79 Identities=28% Similarity=0.357 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.+..+|||+|||..+++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|.+|+..|+|..|.|+.|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 446799999999999999999999999999999886 356899999999999999999999999999999999998
Q ss_pred CCCC
Q psy10320 186 KPRG 189 (262)
Q Consensus 186 ~~~~ 189 (262)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 7654
No 240
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-16 Score=108.33 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 109 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
+.....+|||+|||..+++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|..|++.|+|..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34446799999999999999999999999999999886 3347899999999999999999999999999999999
Q ss_pred ecCCCC
Q psy10320 184 EDKPRG 189 (262)
Q Consensus 184 ~~~~~~ 189 (262)
.+.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 987753
No 241
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-16 Score=103.52 Aligned_cols=78 Identities=26% Similarity=0.387 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
...++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|.+|+..|||..+.|+.|.|.++.++..
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV---KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC---SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE---CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 346799999999999999999999999999999886 56999999999999999999999999999999999987654
Q ss_pred C
Q psy10320 191 G 191 (262)
Q Consensus 191 ~ 191 (262)
.
T Consensus 85 ~ 85 (92)
T 2dgt_A 85 T 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 242
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.70 E-value=1.2e-16 Score=103.45 Aligned_cols=75 Identities=24% Similarity=0.366 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.+|||+|||..+++++|.++|+.||.|..+.+. +..+|+|||+|.+.++|..|+..|+|..+.|+.|.|..+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 489999999999999999999999999999876 344789999999999999999999999999999999998875
No 243
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1e-16 Score=109.65 Aligned_cols=79 Identities=13% Similarity=0.157 Sum_probs=71.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCC--cccCCceEEEeecCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDN--AELNGRRIRLIEDKPRG 189 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g--~~~~g~~~~v~~~~~~~ 189 (262)
+..+|||+|||+.+++++|+++|++||.|..+.+... +|+|||+|++.++|.+|++.|++ ..+.|+.|.|.++.++.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 4679999999999999999999999999999988754 79999999999999999998874 68999999999997664
Q ss_pred CC
Q psy10320 190 GG 191 (262)
Q Consensus 190 ~~ 191 (262)
-.
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 244
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.4e-16 Score=104.58 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=69.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCc--ccCCceEEEeecCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA--ELNGRRIRLIEDKPRG 189 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~--~~~g~~~~v~~~~~~~ 189 (262)
+..+|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|++.++|.+|++.|++. .+.|+.|.|.++.++.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 367999999999999999999999999999998875 4799999999999999999988764 5999999999987654
Q ss_pred C
Q psy10320 190 G 190 (262)
Q Consensus 190 ~ 190 (262)
.
T Consensus 93 ~ 93 (104)
T 1wex_A 93 I 93 (104)
T ss_dssp C
T ss_pred c
Confidence 3
No 245
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-16 Score=107.24 Aligned_cols=78 Identities=10% Similarity=0.196 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
..++|||+|||..+++++|+++|+.||.|..+.+... +++|||+|.+.++|..|+..|+|..+.|+.|.|.++.+...
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 3679999999999999999999999999999998865 89999999999999999999999999999999999987654
No 246
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=106.18 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=69.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEE--------Eecc-----cCCCceEEEEecCHHHHHHHHHHhCCccc
Q psy10320 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCY--------ADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAEL 175 (262)
Q Consensus 109 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~ 175 (262)
+..+.++|||+|||..+++++|+++|++||.|.. +.+. +..+|+|||+|.+.++|..|++.|+|..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3445679999999999999999999999999988 7665 34578999999999999999999999999
Q ss_pred CCceEEEeecC
Q psy10320 176 NGRRIRLIEDK 186 (262)
Q Consensus 176 ~g~~~~v~~~~ 186 (262)
.|+.|.|..++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999998863
No 247
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=7.6e-16 Score=106.22 Aligned_cols=76 Identities=24% Similarity=0.228 Sum_probs=68.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCce-EEEEecCHHHHHHHHHHhCCcccCC--ceEEEeecCCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-GVVEFESSSDMKKALDKLDNAELNG--RRIRLIEDKPRG 189 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~-~~v~f~~~~~a~~a~~~l~g~~~~g--~~~~v~~~~~~~ 189 (262)
...|||+||++.+++++|.++|++||.|..+.+... .|+ |||+|++.++|..|++.|||..|.| +.|+|.+++++.
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 345789999999999999999999999999988754 485 9999999999999999999999987 689999998764
No 248
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.69 E-value=1.7e-16 Score=108.36 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
...++|||+|||..+++++|.++|+.||.|..+.+. +..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 346799999999999999999999999999999886 345799999999999999999999999999999999998
Q ss_pred CCCCC
Q psy10320 186 KPRGG 190 (262)
Q Consensus 186 ~~~~~ 190 (262)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 76543
No 249
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-16 Score=108.77 Aligned_cols=78 Identities=28% Similarity=0.451 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc---cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH---KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
....+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|.+|+..|+|..++|+.|.|..+.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 346799999999999999999999999999988886 33589999999999999999999999999999999999876
Q ss_pred C
Q psy10320 188 R 188 (262)
Q Consensus 188 ~ 188 (262)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 250
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=5.1e-16 Score=107.39 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=70.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 109 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
.....++|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|..|++.|||..++|+.|.|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456799999999999999999999999999999886 3458999999999999999999999999999999998
Q ss_pred ecC
Q psy10320 184 EDK 186 (262)
Q Consensus 184 ~~~ 186 (262)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 763
No 251
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.69 E-value=3e-16 Score=104.50 Aligned_cols=76 Identities=18% Similarity=0.321 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 110 TRSDHRLIVENLSS-RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 110 ~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
....++|||+|||. .+++++|+++|+.||.|..+.+ .+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.+.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI---KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE---CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 34467999999998 9999999999999999999988 4799999999999999999999999999999999998764
No 252
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=106.45 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=66.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCc--eEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCc----ccCCceEE
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGE--VCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNA----ELNGRRIR 181 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~--i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~----~~~g~~~~ 181 (262)
-.+|||+|||+.+++++|.++|++||. +..+.+. +.++|||||+|.+.++|.+|++.|||. .++|+.|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 459999999999999999999999995 4566654 456899999999999999999999997 48999999
Q ss_pred EeecCC
Q psy10320 182 LIEDKP 187 (262)
Q Consensus 182 v~~~~~ 187 (262)
|.+++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999863
No 253
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=106.84 Aligned_cols=80 Identities=13% Similarity=0.127 Sum_probs=70.7
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhC--CcccCCceEEEeecC
Q psy10320 110 TRSDHRLIVENLSSR-VSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLD--NAELNGRRIRLIEDK 186 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~--g~~~~g~~~~v~~~~ 186 (262)
..+..+|||+|||++ +++++|+++|++||.|..+.+.. .+++|||+|++.++|..|++.|+ +..+.|+.|.|.++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 100 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSE 100 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECc
Confidence 334779999999998 99999999999999999998864 57999999999999999999886 456999999999987
Q ss_pred CCCC
Q psy10320 187 PRGG 190 (262)
Q Consensus 187 ~~~~ 190 (262)
++..
T Consensus 101 ~~~~ 104 (112)
T 1x4f_A 101 KYKK 104 (112)
T ss_dssp SCSS
T ss_pred cccc
Confidence 6543
No 254
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=109.58 Aligned_cols=79 Identities=8% Similarity=0.222 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhcCCceEEEecc--cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 111 RSDHRLIVENLSSRVSWQDLK----DFMRQVGEVCYADAH--KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
.+.++|||+|||..+++++|+ ++|++||.|..+.+. +..+|+|||+|.+.++|..|+..|||..+.|+.|.|.+
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346799999999999999866 799999999988776 46789999999999999999999999999999999999
Q ss_pred cCCCC
Q psy10320 185 DKPRG 189 (262)
Q Consensus 185 ~~~~~ 189 (262)
+.++.
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 87653
No 255
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.5e-16 Score=106.44 Aligned_cols=80 Identities=21% Similarity=0.272 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-CCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcc-cCCceEEEee
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAE-LNGRRIRLIE 184 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~-~~g~~~~v~~ 184 (262)
.+.++|||+|||..+++++|+++|.. ||.|..+.+.. ..+++|||+|.+.++|..|+..|+|.. +.|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 34679999999999999999999999 99999998863 467899999999999999999999999 9999999999
Q ss_pred cCCCCC
Q psy10320 185 DKPRGG 190 (262)
Q Consensus 185 ~~~~~~ 190 (262)
+.++..
T Consensus 87 a~~~~~ 92 (104)
T 2dhg_A 87 AIPKAS 92 (104)
T ss_dssp CCCCCS
T ss_pred ccCCCc
Confidence 876644
No 256
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-16 Score=107.02 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=71.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceE--------EEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCc
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVC--------YADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGR 178 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--------~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~ 178 (262)
..++|||+|||..+++++|+++|++||.|. .+.+. +..+++|||+|.+.++|..|+..|+|..+.|+
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGS 93 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCC
Confidence 467999999999999999999999999998 46665 34578999999999999999999999999999
Q ss_pred eEEEeecCCCCCC
Q psy10320 179 RIRLIEDKPRGGG 191 (262)
Q Consensus 179 ~~~v~~~~~~~~~ 191 (262)
.|.|..+.++...
T Consensus 94 ~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 94 KLKVSLARKKPPM 106 (113)
T ss_dssp ECEEECSSCCCCS
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 257
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.69 E-value=2.4e-16 Score=103.18 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=70.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----C-CCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----R-HRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~-~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..+|||+|||..+++++|.++|++||.|..+.+.. . .+|+|||+|.+.++|..|+..|||..++|+.|.|..+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999998862 2 68999999999999999999999999999999999987
Q ss_pred CCC
Q psy10320 187 PRG 189 (262)
Q Consensus 187 ~~~ 189 (262)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 258
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.3e-16 Score=106.46 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCce----EEEecc-cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEV----CYADAH-KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i----~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.+.++|||+|||..+++++|.++|..||.| ..+.+. +..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 102 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFG 102 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEc
Confidence 346799999999999999999999999987 445443 667899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.++...
T Consensus 103 ~~~~~~ 108 (115)
T 2cpx_A 103 KNKKQR 108 (115)
T ss_dssp CCCSCC
T ss_pred cCCCCC
Confidence 876543
No 259
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=1.6e-16 Score=107.85 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
....++|||+|||..+++++|+++|++||.|..+.+. +|+|||+|.+.++|..|+..|+|..++|+.|.|.++.+..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 3446799999999999999999999999999999887 7999999999999999999999999999999999987653
No 260
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.2e-16 Score=104.27 Aligned_cols=79 Identities=27% Similarity=0.437 Sum_probs=69.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEec-ccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA-HKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~-~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
...+|||+|||..+++++|+++|.+||.|..+.. .+..+++|||+|.+.++|.+|+..|+|..+.|+.|.|.++.++..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 4679999999999999999999999998843222 245789999999999999999999999999999999999987644
No 261
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.4e-16 Score=116.87 Aligned_cols=71 Identities=24% Similarity=0.452 Sum_probs=67.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++|||+|||+.+|+++|+++|+.||.|..+.+. +|+|||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 87 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 87 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence 5789999999999999999999999999999883 6799999999999999999999999999999999985
No 262
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=109.24 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=58.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-----------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEI 71 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-----------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~ 71 (262)
.++|||+|||+.+|+++|+++|+.||+|. +.+. +|||||+|.++++|+.||+.|++ ++|+.|.+..
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~ 84 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVS 84 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEecc
Confidence 58999999999999999999999999998 6552 68999999999999999998843 6677666654
Q ss_pred cc
Q psy10320 72 AK 73 (262)
Q Consensus 72 ~~ 73 (262)
+.
T Consensus 85 ~~ 86 (114)
T 2dnl_A 85 SP 86 (114)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 263
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.6e-16 Score=103.37 Aligned_cols=78 Identities=22% Similarity=0.342 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
+..+|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|.+|++.|+|..+.|+.|.|.++.+...
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 356999999999999999999999999999998874 479999999999999999999999999999999999987543
No 264
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=107.37 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
...+|||+|||..+++++|.++|+.||.|..+.+. +..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 35789999999999999999999999999999886 3457999999999999999999999999999999999987
Q ss_pred CCC
Q psy10320 187 PRG 189 (262)
Q Consensus 187 ~~~ 189 (262)
++.
T Consensus 102 ~~~ 104 (106)
T 1p27_B 102 VRG 104 (106)
T ss_dssp ESS
T ss_pred CCC
Confidence 653
No 265
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=108.76 Aligned_cols=76 Identities=24% Similarity=0.331 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..++|||+|||..+++++|+++|..||.|..+.+. +..+|+|||+|.+.++|.+|+ .|+|..|.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 35699999999999999999999999999999887 456899999999999999999 999999999999999876
Q ss_pred CC
Q psy10320 187 PR 188 (262)
Q Consensus 187 ~~ 188 (262)
++
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 266
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=3e-16 Score=114.02 Aligned_cols=79 Identities=22% Similarity=0.197 Sum_probs=72.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..++|||+|||..+++++|+++|+.||.|..|.+. +..+++|||+|.+.++|.+||..|++..|.|+.|.|.++.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 117 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDA 117 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 46799999999999999999999999999999886 3357899999999999999999999999999999999998
Q ss_pred CCCC
Q psy10320 187 PRGG 190 (262)
Q Consensus 187 ~~~~ 190 (262)
+...
T Consensus 118 ~~~~ 121 (156)
T 1h2v_Z 118 GFKE 121 (156)
T ss_dssp CCCT
T ss_pred CCCC
Confidence 7544
No 267
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=105.47 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=68.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCc-eEEEecccCCCceEEEEecCHHHHHHHHHHhCC-cccCCceEEEeecCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGE-VCYADAHKRHRNEGVVEFESSSDMKKALDKLDN-AELNGRRIRLIEDKPRG 189 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g-~~~~g~~~~v~~~~~~~ 189 (262)
..++|||+|||..+++++|+++|++||. |..+.+. .+++|||+|.+.++|..|+..||| ..++|+.|.|.++.++.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 3569999999999999999999999998 5555443 579999999999999999999999 99999999999998764
Q ss_pred C
Q psy10320 190 G 190 (262)
Q Consensus 190 ~ 190 (262)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 4
No 268
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=2.2e-16 Score=109.30 Aligned_cols=79 Identities=19% Similarity=0.228 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCce-EEEEecCHHHHHHHHHHhCCcccCC--ceEEEeecCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-GVVEFESSSDMKKALDKLDNAELNG--RRIRLIEDKP 187 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~-~~v~f~~~~~a~~a~~~l~g~~~~g--~~~~v~~~~~ 187 (262)
.....|||+||++.+++++|.++|++||.|..+.+....+++ |||+|.+.++|..|++.|||..+.| +.|+|.++++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 334578899999999999999999999999999888766787 9999999999999999999999998 8999999987
Q ss_pred CC
Q psy10320 188 RG 189 (262)
Q Consensus 188 ~~ 189 (262)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 269
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.68 E-value=2.2e-16 Score=121.02 Aligned_cols=73 Identities=25% Similarity=0.497 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.++..
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~ 204 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVT 204 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSS
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecC
Confidence 4799999999999999999999999999999983 68999999999999999999999999999999999986
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 205 ~ 205 (216)
T 2qfj_A 205 P 205 (216)
T ss_dssp C
T ss_pred C
Confidence 5
No 270
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=105.82 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=71.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceE-EEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCce----EE
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVC-YADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRR----IR 181 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~-~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~----~~ 181 (262)
+..+|||+|||..+++++|+++|++||.|. .+.+.. ..+++|||+|.+.++|..|++.|||..+.|+. |.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~ 87 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFK 87 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEE
Confidence 467999999999999999999999999998 888763 35689999999999999999999999999999 99
Q ss_pred EeecCCCCC
Q psy10320 182 LIEDKPRGG 190 (262)
Q Consensus 182 v~~~~~~~~ 190 (262)
|.++.+...
T Consensus 88 v~~a~~~~~ 96 (99)
T 2div_A 88 LNYATYSGP 96 (99)
T ss_dssp EEETTCCSS
T ss_pred EeecCCCCC
Confidence 999876543
No 271
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.6e-16 Score=117.44 Aligned_cols=70 Identities=29% Similarity=0.584 Sum_probs=66.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|+|||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4799999999999999999999999999999983 589999999999999999999999999999999987
No 272
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.5e-16 Score=105.83 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=70.3
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 112 SDHRLIVENLSS-RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 112 ~~~~l~v~nl~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
+.++|||+|||. .+++++|+++|++||.|..+.+. +++|||+|.+.++|..|+..|+|..+.|+.|.|..+.+...
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 467999999998 99999999999999999999884 79999999999999999999999999999999999876543
No 273
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-16 Score=106.42 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=71.4
Q ss_pred CCceEEEcCCCCCCCHHHHH---HHhhcCCceEEEeccc--------CCCceEEEEecCHHHHHHHHHHhCCcccCCceE
Q psy10320 112 SDHRLIVENLSSRVSWQDLK---DFMRQVGEVCYADAHK--------RHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~---~~f~~~g~i~~~~~~~--------~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~ 180 (262)
..++|||+|||..+++++|. ++|.+||.|..+.+.. .++|+|||+|.+.++|.+|++.|||..++|+.|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 35699999999999999999 9999999999998873 234899999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy10320 181 RLIEDKPRG 189 (262)
Q Consensus 181 ~v~~~~~~~ 189 (262)
.|.++.++.
T Consensus 94 ~V~~a~~k~ 102 (111)
T 2cpi_A 94 KASLGTTKY 102 (111)
T ss_dssp EEESCCCCS
T ss_pred EEEeccccc
Confidence 999998775
No 274
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6.3e-16 Score=104.07 Aligned_cols=81 Identities=25% Similarity=0.413 Sum_probs=70.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc--cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH--KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.+.++|||+|||..+++++|+++|+.|+.|..+... +..+++|||+|.+.++|..|+..|+|..|.|+.|.|.++.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 346799999999999999999999998765554432 455789999999999999999999999999999999999876
Q ss_pred CCC
Q psy10320 189 GGG 191 (262)
Q Consensus 189 ~~~ 191 (262)
...
T Consensus 93 ~~~ 95 (102)
T 2fc8_A 93 GEG 95 (102)
T ss_dssp CSS
T ss_pred CCC
Confidence 553
No 275
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-15 Score=103.93 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|++||.|..+.+.. ..+++|||+|.+.++|.+|++.+++ .+.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 3467999999999999999999999999999998873 3578999999999999999999998 899999999998
Q ss_pred CCCC
Q psy10320 186 KPRG 189 (262)
Q Consensus 186 ~~~~ 189 (262)
.+..
T Consensus 94 ~~~~ 97 (116)
T 2cqd_A 94 YLGA 97 (116)
T ss_dssp TTTC
T ss_pred ccCC
Confidence 7643
No 276
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=104.52 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
....+|||+|||..+++++|+++|++||.|..+.+.. ..+++|||+|.+.++|.+|+..|+|..+.|+.|.|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 3467999999999999999999999999999998873 347899999999999999999999999999999998875
Q ss_pred C
Q psy10320 187 P 187 (262)
Q Consensus 187 ~ 187 (262)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 277
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=106.16 Aligned_cols=81 Identities=26% Similarity=0.466 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
....+|||+|||..+++++|+++|..||.|..+...+..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.++..
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 34679999999999999999999999998877744466789999999999999999999999999999999999987654
Q ss_pred C
Q psy10320 191 G 191 (262)
Q Consensus 191 ~ 191 (262)
.
T Consensus 94 ~ 94 (96)
T 1fjc_A 94 T 94 (96)
T ss_dssp C
T ss_pred C
Confidence 3
No 278
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=8.1e-17 Score=107.92 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=69.9
Q ss_pred CceEEEcCCCC------CCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCC-ceE
Q psy10320 113 DHRLIVENLSS------RVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNG-RRI 180 (262)
Q Consensus 113 ~~~l~v~nl~~------~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g-~~~ 180 (262)
.++|||+|||. .+++++|.++|++||.|..+.+. +.++|+|||+|.+.++|.+|+..|||..+.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 56999999999 99999999999999999999887 4568999999999999999999999999999 999
Q ss_pred EEeecCC
Q psy10320 181 RLIEDKP 187 (262)
Q Consensus 181 ~v~~~~~ 187 (262)
.|..+.+
T Consensus 86 ~V~~a~~ 92 (100)
T 3ns6_A 86 FLYTMKD 92 (100)
T ss_dssp EEEESHH
T ss_pred EEEECch
Confidence 9988764
No 279
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=3.2e-16 Score=104.52 Aligned_cols=79 Identities=19% Similarity=0.353 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHhhcCCceEEEecc--cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 111 RSDHRLIVENLSSRVSWQDLK----DFMRQVGEVCYADAH--KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~i~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
.+..+|||+|||..+++++|+ ++|++||.|..+.+. +..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.+
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 85 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 85 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346799999999999999999 999999999999886 35679999999999999999999999999999999999
Q ss_pred cCCCC
Q psy10320 185 DKPRG 189 (262)
Q Consensus 185 ~~~~~ 189 (262)
+.+..
T Consensus 86 a~~~~ 90 (97)
T 1nu4_A 86 AKTDS 90 (97)
T ss_dssp CSSCC
T ss_pred ccCCC
Confidence 87754
No 280
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.67 E-value=3.8e-16 Score=106.14 Aligned_cols=78 Identities=26% Similarity=0.380 Sum_probs=70.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 109 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
+..+..+|||+|||..+++++|+++|..||.|..+.+. +..+++|||+|.+.++|.+|+..|+|..+.|+.|.|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34457799999999999999999999999999998887 34578999999999999999999999999999999988
Q ss_pred cC
Q psy10320 185 DK 186 (262)
Q Consensus 185 ~~ 186 (262)
+.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 64
No 281
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.2e-16 Score=106.08 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=70.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
..++|||+|||..+++++|+++|+.||.|..+.+. ..+++|||+|.+.++|..|+..|+|..++|+.|.|.+++++
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 35799999999999999999999999999999887 46899999999999999999999999999999999988753
No 282
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-16 Score=101.03 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=69.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHh-CCcccCCceEEEeecC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKL-DNAELNGRRIRLIEDK 186 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l-~g~~~~g~~~~v~~~~ 186 (262)
....+|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|..|+..| +|..+.|+.|.|.+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 3457999999999999999999999999999998875 4799999999999999999999 9999999999998864
No 283
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.5e-16 Score=105.29 Aligned_cols=77 Identities=19% Similarity=0.267 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..++|||+|||..+++++|+++|..||.|..+.+. +..+++|||+|.+.++|.+|++.|+|..+.|+.|.|..+.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 35799999999999999999999999988644333 3467999999999999999999999999999999999986
Q ss_pred CC
Q psy10320 187 PR 188 (262)
Q Consensus 187 ~~ 188 (262)
..
T Consensus 94 ~~ 95 (98)
T 2cqp_A 94 GP 95 (98)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 284
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.66 E-value=5.9e-17 Score=106.48 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCC--ceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVG--EVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
.+|||+|||..+++++|+++|+.|| .|..+.+. +.++|+|||+|.+.++|.+|++.|||..+.|+.|.|..+.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 3799999999999999999999999 88888775 3567899999999999999999999999999999999887
Q ss_pred CCC
Q psy10320 187 PRG 189 (262)
Q Consensus 187 ~~~ 189 (262)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 285
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.66 E-value=2.5e-15 Score=104.78 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=73.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 109 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
...+.++|||+|||..+++++|+++|+.||.|..+.+.. ..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 445578999999999999999999999999999888863 4689999999999999999999999999999999999
Q ss_pred cCCCC
Q psy10320 185 DKPRG 189 (262)
Q Consensus 185 ~~~~~ 189 (262)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 87643
No 286
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=104.92 Aligned_cols=80 Identities=26% Similarity=0.345 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|.+||.|..+.+.. ..+++|||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 3467999999999999999999999999999998863 3468999999999999999998 999999999999998
Q ss_pred CCCCCC
Q psy10320 186 KPRGGG 191 (262)
Q Consensus 186 ~~~~~~ 191 (262)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 876543
No 287
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.66 E-value=6.1e-16 Score=106.49 Aligned_cols=78 Identities=18% Similarity=0.299 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc--cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH--KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.+..+|||+|||..+++++|.++|+.||.|..+.+. +..+|+|||+|.+.++|..|+..|||..+.|+.|.|.++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 346799999999999999999999999999999886 456899999999999999999999999999999999998754
No 288
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.66 E-value=5.5e-16 Score=111.36 Aligned_cols=79 Identities=19% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccC-CCceEEEEecCHHHHHHHHHHhCCcccCC--ceEEEeecCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR-HRNEGVVEFESSSDMKKALDKLDNAELNG--RRIRLIEDKP 187 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~v~f~~~~~a~~a~~~l~g~~~~g--~~~~v~~~~~ 187 (262)
.....|||+||++.+++++|+++|++||.|..+.+... .+++|||+|.+.++|..|++.|||..|.| +.|+|.++++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 33567999999999999999999999999999998743 46799999999999999999999999966 9999999987
Q ss_pred CC
Q psy10320 188 RG 189 (262)
Q Consensus 188 ~~ 189 (262)
+.
T Consensus 124 ~~ 125 (164)
T 1sjr_A 124 TS 125 (164)
T ss_dssp SS
T ss_pred Cc
Confidence 63
No 289
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=3.7e-16 Score=118.15 Aligned_cols=73 Identities=27% Similarity=0.525 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|..|+..|||..|+|+.|.|.++.+
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4799999999999999999999999999999983 68999999999999999999999999999999999986
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 194 ~ 194 (198)
T 2yh0_A 194 G 194 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 290
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.66 E-value=2.7e-16 Score=105.39 Aligned_cols=77 Identities=25% Similarity=0.371 Sum_probs=68.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc------CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK------RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~------~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
....++|||+|||..+++++|+++|+.|| |..+.+.. ..+|+|||+|.+.++|..|+ .|+|..++|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 44467999999999999999999999999 99998863 34899999999999999999 899999999999999
Q ss_pred ecCCC
Q psy10320 184 EDKPR 188 (262)
Q Consensus 184 ~~~~~ 188 (262)
.+.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98765
No 291
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=1.5e-16 Score=116.99 Aligned_cols=72 Identities=25% Similarity=0.487 Sum_probs=67.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|.+|++ +++..|.|+.|.|.++.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 4689999999999999999999999999999983 5799999999999999996 899999999999999976
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 292
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3e-15 Score=99.72 Aligned_cols=76 Identities=13% Similarity=0.184 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
..++|||+|+ .+++++|+++|++||.|..+.+. ..+++|||+|.+.++|.+|+..|+|..+.|+.|.|.++.++..
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 4679999996 89999999999999999999884 5789999999999999999999999999999999999977644
No 293
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.66 E-value=7.3e-16 Score=101.05 Aligned_cols=75 Identities=19% Similarity=0.358 Sum_probs=69.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
.++|||+|||..+++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|.+|+ .|+|..+.|+.|.|..+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 4589999999999999999999999999999876 345889999999999999999 9999999999999999876
Q ss_pred C
Q psy10320 188 R 188 (262)
Q Consensus 188 ~ 188 (262)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 294
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=9.7e-16 Score=103.60 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=69.5
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhhcCCceEEEecc---cCCCceEEEEecCHHHHHHHHHHhCCcccCCc-eEEE
Q psy10320 113 DHRLIVENLSSRV------SWQDLKDFMRQVGEVCYADAH---KRHRNEGVVEFESSSDMKKALDKLDNAELNGR-RIRL 182 (262)
Q Consensus 113 ~~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~-~~~v 182 (262)
.++|||+|||..+ ++++|.++|++||.|..+.+. +.++|+|||+|.+.++|..|+..|||..+.|+ .|.|
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V 94 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 94 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEE
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEE
Confidence 5699999999999 789999999999999999887 34689999999999999999999999999998 9999
Q ss_pred eecCCC
Q psy10320 183 IEDKPR 188 (262)
Q Consensus 183 ~~~~~~ 188 (262)
..+...
T Consensus 95 ~~a~~~ 100 (105)
T 2nlw_A 95 NLFTDF 100 (105)
T ss_dssp ECSCCC
T ss_pred EEcchH
Confidence 887643
No 295
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=6.9e-16 Score=106.40 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=70.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
.++|||+|||..+++++|+++|..||.|..+.+. +..+|+|||+|.+.++|..||.. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 4799999999999999999999999999988876 34578999999999999999987 99999999999999987
Q ss_pred CCCC
Q psy10320 188 RGGG 191 (262)
Q Consensus 188 ~~~~ 191 (262)
+...
T Consensus 106 ~~~~ 109 (116)
T 1x4b_A 106 REES 109 (116)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7543
No 296
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8e-16 Score=101.30 Aligned_cols=78 Identities=15% Similarity=0.254 Sum_probs=69.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.....+|||+|||..+++++|+++|+.| .|..+.+. +..+|+|||+|.+.++|..|+. |+|..++|+.|.|..+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 3446799999999999999999999999 88888776 3457899999999999999999 9999999999999998
Q ss_pred CCCC
Q psy10320 186 KPRG 189 (262)
Q Consensus 186 ~~~~ 189 (262)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7663
No 297
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=6.1e-16 Score=105.61 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=69.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.++|||+|||..+++++|+++|++||.|..+.+.. .+++|||+|.+.++|..|+..|||..+.|+.|.|.++...
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 56999999999999999999999999999998874 6799999999999999999999999999999999988653
No 298
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.65 E-value=3.4e-16 Score=117.38 Aligned_cols=73 Identities=19% Similarity=0.358 Sum_probs=65.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.|. +|||||+|.+.++|+.|+..+ +..|.|+.|.|.+....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 4799999999999999999999999999999884 699999999999999999655 56999999999988765
Q ss_pred C
Q psy10320 76 D 76 (262)
Q Consensus 76 ~ 76 (262)
.
T Consensus 188 ~ 188 (193)
T 2voo_A 188 F 188 (193)
T ss_dssp -
T ss_pred H
Confidence 3
No 299
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=9e-16 Score=103.01 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=68.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
....+|||+|||+.+++++|+++|+.||.+ .+.+. +.++|+|||+|.+.++|.+||+ +++..++|+.|.|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 345799999999999999999999999965 77665 4457899999999999999994 79999999999999887
Q ss_pred CCCCC
Q psy10320 187 PRGGG 191 (262)
Q Consensus 187 ~~~~~ 191 (262)
+....
T Consensus 91 ~~~~~ 95 (102)
T 1wez_A 91 TAGTS 95 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 66543
No 300
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.65 E-value=6.8e-16 Score=103.84 Aligned_cols=73 Identities=22% Similarity=0.218 Sum_probs=65.4
Q ss_pred ccceEEEcCCCC-----CCCHHHHHHHHhcCCceeEEEee---------CcEEEEEeCChhhHHHHHHHhcCcccCCceE
Q psy10320 2 VGTKVYIGGLPY-----GVRERDLEKFVKGYGRIRDVILK---------NGFGFVEFEDYRDADDAVYELNGKSLLGERV 67 (262)
Q Consensus 2 ~~~~l~V~nl~~-----~~t~~~l~~~F~~~G~v~~v~i~---------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 67 (262)
.+.+|+|.||.. ..++++|+++|++||.|..|.|. +|+|||+|.++++|.+|+..|||..|+|+.|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i 86 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVV 86 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 467999999963 34799999999999999999883 5899999999999999999999999999999
Q ss_pred EEEEccC
Q psy10320 68 TVEIAKG 74 (262)
Q Consensus 68 ~v~~~~~ 74 (262)
.|.++..
T Consensus 87 ~v~~a~~ 93 (105)
T 2pe8_A 87 KACFYNL 93 (105)
T ss_dssp EEEECCH
T ss_pred EEEEcCH
Confidence 9999864
No 301
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.65 E-value=8e-16 Score=108.35 Aligned_cols=78 Identities=12% Similarity=0.214 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEE--Eecc-----cCCCceEEEEecCHHHHHHHHHHhCCc----ccCCce
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCY--ADAH-----KRHRNEGVVEFESSSDMKKALDKLDNA----ELNGRR 179 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~----~~~g~~ 179 (262)
....+|||+|||..+++++|+++|.+||.|.. +.+. +.++|||||+|.+. +|.+|+..|+|. .+.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 34569999999999999999999999999965 6665 45689999999999 999999999999 999999
Q ss_pred EEEeecCCCC
Q psy10320 180 IRLIEDKPRG 189 (262)
Q Consensus 180 ~~v~~~~~~~ 189 (262)
|.|.++.+..
T Consensus 100 l~V~~a~~~~ 109 (131)
T 2m2b_A 100 INVEFAKGSK 109 (131)
T ss_dssp CCCEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997753
No 302
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.3e-15 Score=102.63 Aligned_cols=79 Identities=15% Similarity=0.273 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCccc--------CCc
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAEL--------NGR 178 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~--------~g~ 178 (262)
...++|||+|||..+++++|+++|..||.|..+.+.. ..+++|||+|.+.++|..|+..|||..+ .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 3457999999999999999999999999999998863 3578999999999999999999999999 577
Q ss_pred eEEEeecCCCC
Q psy10320 179 RIRLIEDKPRG 189 (262)
Q Consensus 179 ~~~v~~~~~~~ 189 (262)
.|.|.++.+..
T Consensus 103 ~l~v~~a~p~~ 113 (114)
T 1x5o_A 103 PLLCKFSGPSS 113 (114)
T ss_dssp CBEEEECCCSC
T ss_pred ceeEEccCCCC
Confidence 89999987653
No 303
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=97.65 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=65.5
Q ss_pred Cce-EEEcCCCCCCCHHH----HHHHhhcCC-ceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHR-LIVENLSSRVSWQD----LKDFMRQVG-EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~-l~v~nl~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..+ |||+|||..+++++ |.++|.+|| +|..+. .|+|||.|.+.++|..|++.|+|..+.|+.|+|.+++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 445 99999999999887 558999995 998883 2999999999999999999999999999999999998
Q ss_pred CCCC
Q psy10320 187 PRGG 190 (262)
Q Consensus 187 ~~~~ 190 (262)
.+..
T Consensus 83 ~~sd 86 (96)
T 2diu_A 83 KNRE 86 (96)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7754
No 304
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.65 E-value=3.9e-16 Score=115.67 Aligned_cols=73 Identities=21% Similarity=0.345 Sum_probs=67.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe---eCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL---KNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.||.|..+.. .+|||||+|.+.++|..|+..|||..|.|+.|.|.++.++
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 479999999999999999999999999988822 3799999999999999999999999999999999999754
No 305
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-15 Score=101.96 Aligned_cols=77 Identities=21% Similarity=0.248 Sum_probs=68.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEE-Eecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCY-ADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||+.+++++|+++|..||.|.. +.+. +.++|+|||+|.+.++|.+||.. ++..++|+.|.|..+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 44679999999999999999999999999987 7664 45689999999999999999987 999999999999887
Q ss_pred CCC
Q psy10320 186 KPR 188 (262)
Q Consensus 186 ~~~ 188 (262)
.+.
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 306
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=3.2e-16 Score=100.84 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=63.5
Q ss_pred ceEEEcCCCCCC------CHHHHHHHhhcCCceEEEecc---cCCCceEEEEecCHHHHHHHHHHhCCcccCCc-eEEE
Q psy10320 114 HRLIVENLSSRV------SWQDLKDFMRQVGEVCYADAH---KRHRNEGVVEFESSSDMKKALDKLDNAELNGR-RIRL 182 (262)
Q Consensus 114 ~~l~v~nl~~~~------~~~~l~~~f~~~g~i~~~~~~---~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~-~~~v 182 (262)
++|||+|||..+ ++++|+++|++||.|..+.+. +.++|+|||+|.+.++|..|+..|||..+.|+ .|.|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 489999999999 779999999999999999886 34689999999999999999999999999999 8876
No 307
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=6.3e-16 Score=114.45 Aligned_cols=71 Identities=21% Similarity=0.410 Sum_probs=65.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccC---CceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLL---GERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~---g~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|..|+..|||..+. ++.|.|.|+
T Consensus 95 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 95 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp GSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEEC
T ss_pred CCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEec
Confidence 5799999999999999999999999999999983 689999999999999999999998766 499999987
Q ss_pred c
Q psy10320 73 K 73 (262)
Q Consensus 73 ~ 73 (262)
.
T Consensus 175 d 175 (175)
T 3nmr_A 175 D 175 (175)
T ss_dssp C
T ss_pred C
Confidence 3
No 308
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.3e-15 Score=103.06 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCceEEE--cCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCccc-----CCceEEEee
Q psy10320 112 SDHRLIV--ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL-----NGRRIRLIE 184 (262)
Q Consensus 112 ~~~~l~v--~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~-----~g~~~~v~~ 184 (262)
+..+||| +||+..+++++|+++|++||.|..+.+.. .+|||||+|++.++|.+|++.|||.++ .|..|.|.+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 3668999 77999999999999999999999998864 479999999999999999999999988 678899988
Q ss_pred cCCCC
Q psy10320 185 DKPRG 189 (262)
Q Consensus 185 ~~~~~ 189 (262)
+....
T Consensus 103 a~~~p 107 (114)
T 2cq2_A 103 VEKVQ 107 (114)
T ss_dssp ESCCC
T ss_pred cccCc
Confidence 86543
No 309
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.64 E-value=5e-16 Score=117.19 Aligned_cols=75 Identities=25% Similarity=0.494 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.++|||+|||+.+|+++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+.. ++..|+|+.|.|.++.+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALS 182 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCC
Confidence 4799999999999999999999999999999883 68999999999999999965 89999999999999987
Q ss_pred CCcc
Q psy10320 75 IDRS 78 (262)
Q Consensus 75 ~~~~ 78 (262)
+...
T Consensus 183 k~~~ 186 (196)
T 1l3k_A 183 KQEM 186 (196)
T ss_dssp ----
T ss_pred hhHh
Confidence 6544
No 310
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.7e-15 Score=102.21 Aligned_cols=79 Identities=22% Similarity=0.228 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCc-eEEEecc------cCCCceEEEEecCHHHHHHHHHHhC--CcccCCceEEE
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGE-VCYADAH------KRHRNEGVVEFESSSDMKKALDKLD--NAELNGRRIRL 182 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~-i~~~~~~------~~~~~~~~v~f~~~~~a~~a~~~l~--g~~~~g~~~~v 182 (262)
+.++|||+|||..+++++|.++|..||. |..+.+. +..+|+|||+|.+.++|..|+..|+ +..+.|+.|.|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 3679999999999999999999999998 9999886 2568999999999999999999996 58999999999
Q ss_pred eecCCCCC
Q psy10320 183 IEDKPRGG 190 (262)
Q Consensus 183 ~~~~~~~~ 190 (262)
.++.++..
T Consensus 87 ~~a~~~~~ 94 (109)
T 2dis_A 87 DWAEPEID 94 (109)
T ss_dssp EESCSSCS
T ss_pred EEcCCCCC
Confidence 99987644
No 311
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.2e-15 Score=104.37 Aligned_cols=73 Identities=26% Similarity=0.398 Sum_probs=65.6
Q ss_pred cceEEEcCCCCCCC-----------HHHHHHHHhcCCceeEEEee----CcEEEEEeCChhhHHHHHHHhcCcccCCceE
Q psy10320 3 GTKVYIGGLPYGVR-----------ERDLEKFVKGYGRIRDVILK----NGFGFVEFEDYRDADDAVYELNGKSLLGERV 67 (262)
Q Consensus 3 ~~~l~V~nl~~~~t-----------~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 67 (262)
..+|+|.||..... +++|+++|++||.|..|.|. +|||||+|.+.++|+.|+..|||..|+|+.|
T Consensus 15 s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 94 (112)
T 2dit_A 15 ERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 94 (112)
T ss_dssp CCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEEC
T ss_pred ceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 57899999954432 68999999999999999874 7999999999999999999999999999999
Q ss_pred EEEEccCC
Q psy10320 68 TVEIAKGI 75 (262)
Q Consensus 68 ~v~~~~~~ 75 (262)
.|.++.+.
T Consensus 95 ~v~~a~~~ 102 (112)
T 2dit_A 95 TAQAWDGT 102 (112)
T ss_dssp EEEECCSC
T ss_pred EEEEeCCC
Confidence 99998764
No 312
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=7.9e-16 Score=119.00 Aligned_cols=73 Identities=16% Similarity=0.347 Sum_probs=69.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEe---eCcEEEEEeCChhhHHHHHHHhcCcccC-CceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG-RIRDVIL---KNGFGFVEFEDYRDADDAVYELNGKSLL-GERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.|| .|..|.+ .+|+|||+|.+.++|..|+..|||..|. |+.|.|.|+.+.
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 57899999999999999999999999 9999999 5799999999999999999999999999 999999998753
No 313
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=7.2e-16 Score=103.53 Aligned_cols=73 Identities=14% Similarity=0.302 Sum_probs=67.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..+|||+|||..+++++|.++|++||.|..+.+. +.++|+|||+|.+.++|..|+. ++|..++|+.|.|..+.
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 5699999999999999999999999999999887 4568999999999999999998 99999999999997543
No 314
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.64 E-value=7.3e-16 Score=113.35 Aligned_cols=70 Identities=26% Similarity=0.498 Sum_probs=65.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCC--ceEEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLG--ERVTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g--~~l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.||.|..+.+. +|+|||+|.+.++|..|+..|||..|.| +.|.|.++
T Consensus 89 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 89 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 5799999999999999999999999999999883 4899999999999999999999999988 99999875
No 315
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=100.28 Aligned_cols=79 Identities=19% Similarity=0.323 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEe-cc-cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYAD-AH-KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~-~~-~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
....++|||+|||..+++++|+++|..||.|..+. +. ....+.|||+|.+.++|..|+..|||..+.|+.|.|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 34467999999999999999999999999999994 55 33455699999999999999999999999999999999987
Q ss_pred C
Q psy10320 188 R 188 (262)
Q Consensus 188 ~ 188 (262)
+
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 316
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.7e-16 Score=108.50 Aligned_cols=78 Identities=21% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEe-c----ccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYAD-A----HKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 109 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~-~----~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
+.....+|||+|||+.+++++|.++|..||.|..+. + .+..+|+|||+|.+.++|.+||. |||..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 444567999999999999999999999999875422 2 24568999999999999999999 99999999999998
Q ss_pred ecCC
Q psy10320 184 EDKP 187 (262)
Q Consensus 184 ~~~~ 187 (262)
.+.+
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8764
No 317
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=6.9e-16 Score=123.15 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=67.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccC-CceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLL-GERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~ 73 (262)
.++|||+|||..+|+++|+++|+.||.|..|.|. +|||||+|.+.++|..|+..|||..|. |+.|.|.|++
T Consensus 207 ~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 207 NHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 4789999999999999999999999999999994 499999999999999999999999999 9999999985
No 318
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.64 E-value=1.6e-15 Score=103.13 Aligned_cols=79 Identities=27% Similarity=0.374 Sum_probs=69.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
...++|||+|||..+++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|..|+..+ +..++|+.|.|..+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 346799999999999999999999999999999886 345899999999999999999976 59999999999998
Q ss_pred CCCCC
Q psy10320 186 KPRGG 190 (262)
Q Consensus 186 ~~~~~ 190 (262)
.++..
T Consensus 102 ~~~~~ 106 (109)
T 2rs2_A 102 FPRRA 106 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87643
No 319
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.4e-15 Score=100.06 Aligned_cols=78 Identities=23% Similarity=0.339 Sum_probs=69.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|..||.|..+.+.. ..+|+|||+|.+.++|.+|+. ++..++|+.|.|..+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 3467899999999999999999999999999998863 347899999999999999998 578999999999999
Q ss_pred CCCCC
Q psy10320 186 KPRGG 190 (262)
Q Consensus 186 ~~~~~ 190 (262)
.++..
T Consensus 91 ~~~~~ 95 (103)
T 2cqg_A 91 NSKQS 95 (103)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 87654
No 320
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=2.8e-16 Score=102.11 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=66.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
+..+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|..|+..|||..+.|+.+++...
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 35699999999999999999999999999999876 345899999999999999999999999999999877543
No 321
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=1.2e-15 Score=106.44 Aligned_cols=77 Identities=17% Similarity=0.304 Sum_probs=70.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|..|+ .|+|..+.|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 4699999999999999999999999999998875 445899999999999999999 7999999999999999876
Q ss_pred CCC
Q psy10320 188 RGG 190 (262)
Q Consensus 188 ~~~ 190 (262)
...
T Consensus 115 ~~~ 117 (124)
T 2jwn_A 115 NMP 117 (124)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 322
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.63 E-value=7.8e-16 Score=111.32 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=69.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCC--ceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVG--EVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
...+|||+|||..+++++|+++|+.|| .|..+.+. +..+|||||+|.+.++|..||..|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 356999999999999999999999999 89999885 45688999999999999999999999999999999998
Q ss_pred cCCC
Q psy10320 185 DKPR 188 (262)
Q Consensus 185 ~~~~ 188 (262)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 323
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=7e-16 Score=103.64 Aligned_cols=79 Identities=29% Similarity=0.388 Sum_probs=68.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEec----ccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA----HKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~----~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
...+|||+|||..+++++|+++|..||.|....+ .+..+|+|||+|.+.++|.+|++ |+|..+.|+.|.|..+.+
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCC
Confidence 3679999999999999999999999997765212 15678999999999999999998 999999999999999987
Q ss_pred CCCC
Q psy10320 188 RGGG 191 (262)
Q Consensus 188 ~~~~ 191 (262)
+...
T Consensus 95 ~~~~ 98 (101)
T 1fj7_A 95 RDGT 98 (101)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 324
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.63 E-value=6.2e-15 Score=105.11 Aligned_cols=75 Identities=28% Similarity=0.391 Sum_probs=68.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
.+..+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 346799999999999999999999999999999886 346899999999999999999999999999999999764
No 325
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.63 E-value=6.8e-16 Score=116.71 Aligned_cols=73 Identities=16% Similarity=0.347 Sum_probs=68.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEe---eCcEEEEEeCChhhHHHHHHHhcCcccC-CceEEEEEccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYG-RIRDVIL---KNGFGFVEFEDYRDADDAVYELNGKSLL-GERVTVEIAKGI 75 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~i---~~g~afV~f~~~~~a~~a~~~l~~~~~~-g~~l~v~~~~~~ 75 (262)
.++|||+|||+.+|+++|+++|+.|| .|..|.+ .+|+|||+|.+.++|..|+..|||..|. |+.|.|.|+.+.
T Consensus 120 ~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 120 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 57899999999999999999999999 9999999 4799999999999999999999999999 999999998753
No 326
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.63 E-value=3.7e-16 Score=103.80 Aligned_cols=74 Identities=20% Similarity=0.273 Sum_probs=66.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
..+|||+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++.|||..+.|+.|.|..+.
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 15 PTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 5799999999999999999999999988655443 3567999999999999999999999999999999998865
No 327
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=5.1e-15 Score=97.99 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=65.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRG 189 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~ 189 (262)
..+|||+|||..+++++|+++|..||.|..+.+......+|||+|.+.++|.+|+. |+|..++|+.|.|..+.++.
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 46999999999999999999999999999883322221299999999999999999 99999999999998776543
No 328
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.62 E-value=1.5e-15 Score=111.49 Aligned_cols=70 Identities=33% Similarity=0.673 Sum_probs=64.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--------CcEEEEEeCChhhHHHHHHHhcCcccCCce--EEEEEc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYELNGKSLLGER--VTVEIA 72 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~--l~v~~~ 72 (262)
.++|||+|||+.+|+++|+++|+.||.|..+.+. +|+|||+|.+.++|..|++.|||..|.|+. |.|.|+
T Consensus 88 ~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 88 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 4789999999999999999999999999999883 689999999999999999999999999964 888775
No 329
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.62 E-value=2.5e-15 Score=98.02 Aligned_cols=74 Identities=30% Similarity=0.452 Sum_probs=66.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
....+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|.+.++|.+|++ +++..++|+.|.|..+
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 346799999999999999999999999999999886 3457899999999999999996 5888999999999764
No 330
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=3.4e-16 Score=110.54 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=68.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
...+|||+|||+++++++|+++|++|| |..+.+. +.++|+|||+|++.++|.+|| .+++..+.|+.|.|..+.+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNST 122 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCC
Confidence 356999999999999999999999999 5577776 456899999999999999999 7999999999999988876
Q ss_pred CCC
Q psy10320 188 RGG 190 (262)
Q Consensus 188 ~~~ 190 (262)
...
T Consensus 123 ~~~ 125 (139)
T 2hgn_A 123 TGA 125 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 331
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=103.10 Aligned_cols=77 Identities=21% Similarity=0.343 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||..+++++|+++|+.||.|..+.+. +..+|+|||+|.+.++|..|++.|+|..+.|+.|.|.++.+
T Consensus 8 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 87 (104)
T 1p1t_A 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 87 (104)
T ss_dssp HSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTC
T ss_pred ccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCC
Confidence 4689999999999999999999999999888876 23478999999999999999999999999999999999876
Q ss_pred CC
Q psy10320 188 RG 189 (262)
Q Consensus 188 ~~ 189 (262)
..
T Consensus 88 ~~ 89 (104)
T 1p1t_A 88 EK 89 (104)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 332
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.62 E-value=1e-15 Score=96.97 Aligned_cols=70 Identities=29% Similarity=0.425 Sum_probs=64.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
+|||+|||..+++++|+++|++||.|..+.+. +.++|+|||+|.+.++|++|++ |+|..++|+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999886 3457999999999999999997 9999999999998764
No 333
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=107.94 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEE--------e--cccCCCceEEEEecCHHHHHHHHHHhCCcccCCceE
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA--------D--AHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~--------~--~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~ 180 (262)
.+.++|||+|||..+++++|.++|..||.|..+ . ..+..+|+|||+|.+.++|..|+..|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 346799999999999999999999999987542 2 236778999999999999999999999999999999
Q ss_pred EEeecCCCCC
Q psy10320 181 RLIEDKPRGG 190 (262)
Q Consensus 181 ~v~~~~~~~~ 190 (262)
.|.++.+...
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 334
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=3.3e-15 Score=97.66 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=63.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcc--cCCceEEEeecCC
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE--LNGRRIRLIEDKP 187 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~--~~g~~~~v~~~~~ 187 (262)
..+.++|||+|||+++++++|+++|++||.|..+.+...++|||||+|++.++|.+ +++.. +.|+.|.|..+.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 33467999999999999999999999999999999998889999999999999883 55655 4589999999877
Q ss_pred CC
Q psy10320 188 RG 189 (262)
Q Consensus 188 ~~ 189 (262)
+.
T Consensus 84 k~ 85 (89)
T 3d2w_A 84 KH 85 (89)
T ss_dssp --
T ss_pred CC
Confidence 54
No 335
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=1.3e-15 Score=105.19 Aligned_cols=77 Identities=23% Similarity=0.294 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCc---eEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGE---VCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
....++|||+|||+.+++++|+++|+.||. |..+.+. +.++|+|||+|.+.++|.+||+ |++..++|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 444679999999999999999999999998 7776665 4567899999999999999999 9999999999999
Q ss_pred eecCC
Q psy10320 183 IEDKP 187 (262)
Q Consensus 183 ~~~~~ 187 (262)
..+.+
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 336
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=101.79 Aligned_cols=73 Identities=22% Similarity=0.272 Sum_probs=66.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||+.+++++|+++|+.| .|..+.+. +.++|+|||+|.+.++|.+|| .+++..++|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 5699999999999999999999999 78888776 456899999999999999999 6999999999999987754
No 337
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.61 E-value=1.9e-15 Score=98.73 Aligned_cols=74 Identities=14% Similarity=0.337 Sum_probs=68.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
..+|||+|||..+++++|+++|++| .|..+.+. ..+|+|||+|.+.++|..|++.|||..+.|+.|.|..+...
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4689999999999999999999999 89888775 67899999999999999999999999999999999988653
No 338
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.60 E-value=1.2e-15 Score=107.45 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=69.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcCCc---eEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceE
Q psy10320 108 PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGE---VCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180 (262)
Q Consensus 108 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~ 180 (262)
++....++|||+|||+.+++++|+++|+.||. |..+.+. +.++|+|||+|++.++|.+||+ |++..++|+.|
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34445679999999999999999999999998 6666665 4568899999999999999999 99999999999
Q ss_pred EEeecCC
Q psy10320 181 RLIEDKP 187 (262)
Q Consensus 181 ~v~~~~~ 187 (262)
.|..+.+
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9988753
No 339
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=5.2e-15 Score=112.11 Aligned_cols=76 Identities=18% Similarity=0.267 Sum_probs=71.9
Q ss_pred CceEEEcCCC-CCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 113 DHRLIVENLS-SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 113 ~~~l~v~nl~-~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.++|||+||| ..+++++|.++|.+||.|..+.+....+|+|||+|.+.++|..|++.|||..+.|+.|.|.+++..
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 5699999999 899999999999999999999998878899999999999999999999999999999999988644
No 340
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-15 Score=103.10 Aligned_cols=76 Identities=14% Similarity=0.173 Sum_probs=68.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCce-EEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEV-CYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i-~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
...+|||+|||..+++++|+++|+.||.| ..+.+. +..+|+|||+|.+.++|.+||.. ++..|.|+.|.|..+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~ 92 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVT 92 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEEC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECC
Confidence 35799999999999999999999999999 566665 45789999999999999999986 9999999999998886
Q ss_pred CC
Q psy10320 187 PR 188 (262)
Q Consensus 187 ~~ 188 (262)
+.
T Consensus 93 ~~ 94 (114)
T 2cpy_A 93 LE 94 (114)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 341
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=103.08 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcCCc---eEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEE
Q psy10320 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGE---VCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v 182 (262)
....++|||+|||+.+++++|+++|..||. |..+.+. +.++|+|||+|.+.++|.+||. +++..++|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 344679999999999999999999999998 7777776 4568999999999999999999 9999999999999
Q ss_pred eecCC
Q psy10320 183 IEDKP 187 (262)
Q Consensus 183 ~~~~~ 187 (262)
..+.+
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 88764
No 342
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.8e-15 Score=97.35 Aligned_cols=77 Identities=16% Similarity=0.277 Sum_probs=65.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGGG 191 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~~ 191 (262)
.++|||+|||..+++++|+++|++||.|..+.+....+|+|||+|.+.++|++|+. ....+.|..|.|..+.++...
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCCCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCCCC
Confidence 56999999999999999999999999999999987789999999999999975432 133458999999998876543
No 343
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=2e-15 Score=96.08 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=64.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
+|||+|||..+++++|+++|++||.|..+.+. +.++|+|||+|.+.++|..|+..++ ..++|+.|.|..+
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 79999999999999999999999999888776 3457899999999999999999999 9999999999875
No 344
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.58 E-value=8.7e-16 Score=100.91 Aligned_cols=75 Identities=31% Similarity=0.515 Sum_probs=66.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
++|||+|||..+++++|.++|++||.|..+.+. +.++|+|||+|.+.+ |..|+..|+|..++|+.|.|..+.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 379999999999999999999999999998886 455899999999999 99999999999999999999998765
Q ss_pred C
Q psy10320 189 G 189 (262)
Q Consensus 189 ~ 189 (262)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 345
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.58 E-value=7.3e-15 Score=118.52 Aligned_cols=71 Identities=17% Similarity=0.414 Sum_probs=63.3
Q ss_pred cceEEEcC--CCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCChhhHHHHHHHhcCcccC---Cc--eEEEEEcc
Q psy10320 3 GTKVYIGG--LPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELNGKSLL---GE--RVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~n--l~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~a~~a~~~l~~~~~~---g~--~l~v~~~~ 73 (262)
+.+|||+| |++.+|+++|+++|++||+|..|.| .+|||||+|.+.++|++|++.|||..+. |+ .|.|.++.
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 56999999 5789999999999999999999998 5899999999999999999999998773 44 57777774
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.58 E-value=7.5e-15 Score=101.60 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
....+|||+|+ .+++++|+++|+.||.|..+.+. ..+|+|||+|.+.++|..|+..|+|..+.|+.|.|.++.+...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 34679999995 69999999999999999888875 5789999999999999999999999999999999999887643
No 347
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.58 E-value=7.5e-15 Score=108.48 Aligned_cols=79 Identities=24% Similarity=0.343 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 109 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
...+.++|||+|||..+++++|+++|++||.|..+.+. +..+++|||+|.+.++|.+|++.|+|..+.|+.|.|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34456799999999999999999999999999998886 44679999999999999999999999999999999998
Q ss_pred cCC
Q psy10320 185 DKP 187 (262)
Q Consensus 185 ~~~ 187 (262)
+.+
T Consensus 164 a~~ 166 (177)
T 2f3j_A 164 VAS 166 (177)
T ss_dssp ESS
T ss_pred ecC
Confidence 765
No 348
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.57 E-value=9.7e-15 Score=95.20 Aligned_cols=71 Identities=23% Similarity=0.410 Sum_probs=65.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcC----C-------ceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceE
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQV----G-------EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~ 180 (262)
...+|||+|||..+++++|+++|++| | .|..+.+.. .+++|||+|.+.++|.+|+ .|+|..+.|+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-SSSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-CCcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 35799999999999999999999999 8 899888764 3899999999999999999 999999999999
Q ss_pred EEee
Q psy10320 181 RLIE 184 (262)
Q Consensus 181 ~v~~ 184 (262)
.|..
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9863
No 349
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=4.4e-15 Score=114.31 Aligned_cols=76 Identities=20% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCC--ceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVG--EVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
..++|||+||+..+++++|+++|..|| .|..|.|+ +..+|||||+|.+.++|.+||+.|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 356899999999999999999999999 99999886 34678999999999999999999999999999999998
Q ss_pred cCC
Q psy10320 185 DKP 187 (262)
Q Consensus 185 ~~~ 187 (262)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 754
No 350
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.56 E-value=1e-14 Score=98.07 Aligned_cols=73 Identities=19% Similarity=0.293 Sum_probs=63.9
Q ss_pred ccceEEEcCC--CCCCC--------HHHHHHHHhcCCceeEEEee----------CcEEEEEeCChhhHHHHHHHhcCcc
Q psy10320 2 VGTKVYIGGL--PYGVR--------ERDLEKFVKGYGRIRDVILK----------NGFGFVEFEDYRDADDAVYELNGKS 61 (262)
Q Consensus 2 ~~~~l~V~nl--~~~~t--------~~~l~~~F~~~G~v~~v~i~----------~g~afV~f~~~~~a~~a~~~l~~~~ 61 (262)
++..|.|.|| |..+. +++|+++|++||.|..|.|. +|+|||+|.++++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 3568899998 33443 47899999999999999983 5899999999999999999999999
Q ss_pred cCCceEEEEEccC
Q psy10320 62 LLGERVTVEIAKG 74 (262)
Q Consensus 62 ~~g~~l~v~~~~~ 74 (262)
|+|+.|.|.+...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998764
No 351
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.55 E-value=4.8e-15 Score=93.80 Aligned_cols=70 Identities=14% Similarity=0.277 Sum_probs=63.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
+|||+|||..+++++|+++|++||.|..+.+. +.++|+|||+|.+.++|..|++ +++..+.|+.|.|..+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999886 4468999999999999999998 5899999999988754
No 352
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.32 E-value=3.6e-16 Score=107.79 Aligned_cols=78 Identities=22% Similarity=0.433 Sum_probs=70.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEE--------Eecc-----cCCCceEEEEecCHHHHHHHHHHhCCcccCCce
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCY--------ADAH-----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRR 179 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~--------~~~~-----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~ 179 (262)
..+|||+|||..+++++|+++|++||.|.. +.+. +..+++|||+|.+.++|..|+..|+|..+.|+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNP 86 (116)
Confidence 568999999999999999999999999987 6555 345789999999999999999999999999999
Q ss_pred EEEeecCCCCC
Q psy10320 180 IRLIEDKPRGG 190 (262)
Q Consensus 180 ~~v~~~~~~~~ 190 (262)
|.|..+.++..
T Consensus 87 l~V~~a~~~~~ 97 (116)
T 2lcw_A 87 IKVSFATRRAD 97 (116)
Confidence 99999887644
No 353
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.6e-14 Score=93.67 Aligned_cols=71 Identities=23% Similarity=0.331 Sum_probs=60.3
Q ss_pred ceEEEcCCC-------CCCCHHHHHHHHhcCCceeEEEee---CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 4 TKVYIGGLP-------YGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 4 ~~l~V~nl~-------~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.+|.|.-.+ +.+|+++|+++|++||+|.+|.|. +|||||+|.+.++|+.||..+++ +.|+.|.|.++.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~ 88 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLE 88 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSS
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEcc
Confidence 456665543 568999999999999999999994 89999999999999999987554 679999999987
Q ss_pred CCC
Q psy10320 74 GID 76 (262)
Q Consensus 74 ~~~ 76 (262)
...
T Consensus 89 ~~~ 91 (100)
T 2d9o_A 89 GQP 91 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 354
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=2.4e-14 Score=99.17 Aligned_cols=74 Identities=18% Similarity=0.247 Sum_probs=64.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceE--EEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeec
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVC--YADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~--~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~ 185 (262)
...+|||+|||+.+++++|+++|+.| .|. .+.+. +.++|+|||+|.+.++|.+||+ +++..|+|+.|.|..+
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEEC
Confidence 35689999999999999999999999 565 77766 4568999999999999999998 5789999999999776
Q ss_pred CC
Q psy10320 186 KP 187 (262)
Q Consensus 186 ~~ 187 (262)
.+
T Consensus 119 ~~ 120 (126)
T 2hgm_A 119 SQ 120 (126)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 355
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.53 E-value=2.8e-15 Score=100.80 Aligned_cols=63 Identities=25% Similarity=0.495 Sum_probs=54.3
Q ss_pred CCCCCCCHHHHHHHH------------hcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEE
Q psy10320 10 GLPYGVRERDLEKFV------------KGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVE 70 (262)
Q Consensus 10 nl~~~~t~~~l~~~F------------~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 70 (262)
|||..+|+++|++.| ++||+|..|.|. +|||||+|.++++|++|+..|||..|+|+.|.|.
T Consensus 22 ~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~ 101 (104)
T 1jmt_A 22 GLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAE 101 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEE
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEE
Confidence 344445666666555 999999999994 7999999999999999999999999999999998
Q ss_pred Ec
Q psy10320 71 IA 72 (262)
Q Consensus 71 ~~ 72 (262)
++
T Consensus 102 ~s 103 (104)
T 1jmt_A 102 LS 103 (104)
T ss_dssp EC
T ss_pred Ec
Confidence 86
No 356
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.53 E-value=4.4e-14 Score=96.79 Aligned_cols=72 Identities=22% Similarity=0.290 Sum_probs=63.6
Q ss_pred cceEEEcCCCC-----CCCHHHHHHHHhcCCceeEEEee------------CcEEEEEeCChhhHHHHHHHhcCcccCCc
Q psy10320 3 GTKVYIGGLPY-----GVRERDLEKFVKGYGRIRDVILK------------NGFGFVEFEDYRDADDAVYELNGKSLLGE 65 (262)
Q Consensus 3 ~~~l~V~nl~~-----~~t~~~l~~~F~~~G~v~~v~i~------------~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 65 (262)
+.+|+|.||-. .--+++|++.|++||+|..|.|. +|+|||+|.++++|.+|+..|||..|+|+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 57899999942 23478999999999999999983 27999999999999999999999999999
Q ss_pred eEEEEEccC
Q psy10320 66 RVTVEIAKG 74 (262)
Q Consensus 66 ~l~v~~~~~ 74 (262)
.|.|.++..
T Consensus 100 ~i~v~~~~~ 108 (118)
T 3ue2_A 100 KVVAEVYDQ 108 (118)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEcCh
Confidence 999999864
No 357
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=7.2e-15 Score=101.57 Aligned_cols=75 Identities=17% Similarity=0.148 Sum_probs=64.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCce----EEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEV----CYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i----~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
...+|||+|||+.+++++|+++|+.||.| ..+.+. +.++|+|||+|.+.++|.+||.. ++..++|+.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 35699999999999999999999999875 345544 45689999999999999999985 9999999999997
Q ss_pred ecCC
Q psy10320 184 EDKP 187 (262)
Q Consensus 184 ~~~~ 187 (262)
.+.+
T Consensus 101 ~a~~ 104 (123)
T 2dha_A 101 RSTA 104 (123)
T ss_dssp EECH
T ss_pred ECCH
Confidence 7653
No 358
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.51 E-value=6.4e-14 Score=95.31 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=62.9
Q ss_pred ccceEEEcCCCCCC----------CHHHHHHHHhcCCceeEEEee----CcEEEEEeCChhhHHHHHHHhcCcccCCceE
Q psy10320 2 VGTKVYIGGLPYGV----------RERDLEKFVKGYGRIRDVILK----NGFGFVEFEDYRDADDAVYELNGKSLLGERV 67 (262)
Q Consensus 2 ~~~~l~V~nl~~~~----------t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l 67 (262)
.+..|.|.||-... .+++|++.|++||.|.+|.|. +|+|||+|.+.++|.+|++.|||..|+|+.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35678899984321 245789999999999999994 6999999999999999999999999999999
Q ss_pred EEEEccC
Q psy10320 68 TVEIAKG 74 (262)
Q Consensus 68 ~v~~~~~ 74 (262)
.|.++..
T Consensus 86 ~v~~~~~ 92 (114)
T 3s6e_A 86 TAAYVPL 92 (114)
T ss_dssp EEEEECH
T ss_pred EEEEEcH
Confidence 9999864
No 359
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=4.6e-14 Score=111.23 Aligned_cols=73 Identities=26% Similarity=0.335 Sum_probs=65.9
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcC-cccC---CceEEEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNG-KSLL---GERVTVEI 71 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~-~~~~---g~~l~v~~ 71 (262)
+++|||+|||+.+|+++|+++|..||.|..|.|. +|||||+|.+.++|..|+..||+ ..+. ++.|.|.+
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 5799999999999999999999999999999983 78999999999999999999955 4444 89999999
Q ss_pred ccCC
Q psy10320 72 AKGI 75 (262)
Q Consensus 72 ~~~~ 75 (262)
+...
T Consensus 176 ~~~~ 179 (261)
T 3sde_A 176 MEQF 179 (261)
T ss_dssp CCCE
T ss_pred cccc
Confidence 8864
No 360
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.50 E-value=1.3e-14 Score=97.54 Aligned_cols=75 Identities=16% Similarity=0.347 Sum_probs=67.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~ 188 (262)
.++|||+|||..+++++|.++|+.||.|..+.+.. ..+|+|||+|.+.++|..|+. ++..++|+.|.|..+.++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 56999999999999999999999999999998863 357899999999999999998 999999999998887654
Q ss_pred C
Q psy10320 189 G 189 (262)
Q Consensus 189 ~ 189 (262)
.
T Consensus 87 ~ 87 (102)
T 2xs2_A 87 Q 87 (102)
T ss_dssp C
T ss_pred c
Confidence 3
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.9e-13 Score=92.79 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=57.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc--------cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH--------KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~--------~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
.++|||+|||..+++++|+++|++||.|. +.+. +.++|+|||+|++.++|.+|++.|+ .++|+.+.+..
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 56899999999999999999999999998 5554 2568999999999999999999883 25555555443
No 362
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=3.3e-13 Score=90.63 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=65.5
Q ss_pred CceEEEcCCCC-----CCCHHHHHHHhhcCCceEEEeccc------CCCceEEEEecCHHHHHHHHHHhCCcccCCceEE
Q psy10320 113 DHRLIVENLSS-----RVSWQDLKDFMRQVGEVCYADAHK------RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181 (262)
Q Consensus 113 ~~~l~v~nl~~-----~~~~~~l~~~f~~~g~i~~~~~~~------~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 181 (262)
..+|+|.||.. +-++++|+++|++||.|..+.+.. ..+|+|||+|.+.++|.+|+..|||.+++|+.|.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~ 87 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVK 87 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEE
Confidence 56899999963 236899999999999999998863 3579999999999999999999999999999999
Q ss_pred EeecCC
Q psy10320 182 LIEDKP 187 (262)
Q Consensus 182 v~~~~~ 187 (262)
|.++.+
T Consensus 88 v~~a~~ 93 (105)
T 2pe8_A 88 ACFYNL 93 (105)
T ss_dssp EEECCH
T ss_pred EEEcCH
Confidence 988753
No 363
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.47 E-value=1.2e-13 Score=105.77 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCccc------
Q psy10320 111 RSDHRLIVENLSSRV---------SWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL------ 175 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~------ 175 (262)
....+|||+||+..+ ++++|.++|++||.|..+.++. .+|+|||+|.+.++|+.|+++|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 346799999999998 7999999999999999998875 579999999999999999999999999
Q ss_pred ------CCceEEEeecCCCC
Q psy10320 176 ------NGRRIRLIEDKPRG 189 (262)
Q Consensus 176 ------~g~~~~v~~~~~~~ 189 (262)
.|+.|.|..+....
T Consensus 211 e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TGGGGGGSCCCEEEECC---
T ss_pred cccccCCCCEEEEEEccCCC
Confidence 89999999987643
No 364
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.4e-13 Score=89.88 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=67.3
Q ss_pred CCceEEEcCCCCCCC-----------HHHHHHHhhcCCceEEEecc-cCCCceEEEEecCHHHHHHHHHHhCCcccCCce
Q psy10320 112 SDHRLIVENLSSRVS-----------WQDLKDFMRQVGEVCYADAH-KRHRNEGVVEFESSSDMKKALDKLDNAELNGRR 179 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~-----------~~~l~~~f~~~g~i~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~ 179 (262)
+..+|+|.||..... +++|+++|++||.|..+.+. ...+|+|||+|.+.++|..|+..|||..++|+.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 93 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQ 93 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEE
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 367999999944332 57999999999999998765 346899999999999999999999999999999
Q ss_pred EEEeecCCCC
Q psy10320 180 IRLIEDKPRG 189 (262)
Q Consensus 180 ~~v~~~~~~~ 189 (262)
|.|.++.+..
T Consensus 94 l~v~~a~~~~ 103 (112)
T 2dit_A 94 ITAQAWDGTT 103 (112)
T ss_dssp CEEEECCSCC
T ss_pred EEEEEeCCCC
Confidence 9999987653
No 365
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8.5e-14 Score=94.62 Aligned_cols=74 Identities=15% Similarity=0.245 Sum_probs=64.4
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhhcCCceEEEecc-----cCCCceEEEEecC----HHH----HHHHHH--HhCCcc
Q psy10320 114 HRLIVENL----SSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFES----SSD----MKKALD--KLDNAE 174 (262)
Q Consensus 114 ~~l~v~nl----~~~~~~~~l~~~f~~~g~i~~~~~~-----~~~~~~~~v~f~~----~~~----a~~a~~--~l~g~~ 174 (262)
..|||+|| |+.+++.+|+++|+.||+|..+.+. +.++|+|||+|.+ +++ |..|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 48999999 9999999999999999999999876 5679999999996 333 788888 789999
Q ss_pred cCCceEEEeecCC
Q psy10320 175 LNGRRIRLIEDKP 187 (262)
Q Consensus 175 ~~g~~~~v~~~~~ 187 (262)
|+|+.|+|..+..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999988753
No 366
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.43 E-value=1.6e-12 Score=97.39 Aligned_cols=74 Identities=14% Similarity=0.294 Sum_probs=66.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc----cCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH----KRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~----~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|||+|||..+++++|+++|++||.|..+.+. +..+|+|||+|++.++|..|+..+ +..++|+.|.|.....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 4689999999999999999999999999999876 456899999999999999999755 5699999999987654
No 367
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=7.6e-13 Score=90.01 Aligned_cols=73 Identities=21% Similarity=0.264 Sum_probs=65.7
Q ss_pred ccceEEEcCCCCC-CCHHHHHHHHhcCCceeEEEeeC--cEEEEEeCC-hhhHHHHHHHhc--CcccCCceEEEEEccC
Q psy10320 2 VGTKVYIGGLPYG-VRERDLEKFVKGYGRIRDVILKN--GFGFVEFED-YRDADDAVYELN--GKSLLGERVTVEIAKG 74 (262)
Q Consensus 2 ~~~~l~V~nl~~~-~t~~~l~~~F~~~G~v~~v~i~~--g~afV~f~~-~~~a~~a~~~l~--~~~~~g~~l~v~~~~~ 74 (262)
.++.|||+||++. ++.++|+++|+.||+|..|.+.+ ..|||.|.+ +++|..|+..|+ +..|.|..+.++....
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 4789999999999 99999999999999999999964 489999999 799999999995 6799999999887653
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3e-12 Score=84.86 Aligned_cols=66 Identities=17% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCCCCC
Q psy10320 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKPRGG 190 (262)
Q Consensus 123 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~~~~ 190 (262)
..+++++|+++|++||.|..+.+.+..+|||||+|++.++|..|+..+++ +.|+.|.|.++.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 56899999999999999999999988899999999999999999987544 6799999999877654
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.36 E-value=3.3e-12 Score=85.79 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=63.7
Q ss_pred CceEEEcCC--CCCCC--------HHHHHHHhhcCCceEEEeccc-------CCCceEEEEecCHHHHHHHHHHhCCccc
Q psy10320 113 DHRLIVENL--SSRVS--------WQDLKDFMRQVGEVCYADAHK-------RHRNEGVVEFESSSDMKKALDKLDNAEL 175 (262)
Q Consensus 113 ~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~i~~~~~~~-------~~~~~~~v~f~~~~~a~~a~~~l~g~~~ 175 (262)
...|.+.|+ |.++. +++|+++|++||.|..+.+.. ..+|++||+|.+.++|.+|+..|||..+
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 568899998 33333 368999999999999999873 3579999999999999999999999999
Q ss_pred CCceEEEeecC
Q psy10320 176 NGRRIRLIEDK 186 (262)
Q Consensus 176 ~g~~~~v~~~~ 186 (262)
+|+.|.|.+..
T Consensus 85 ~GR~i~v~~~~ 95 (105)
T 3v4m_A 85 ANRVVVTKYCD 95 (105)
T ss_dssp TTEECEEEEEC
T ss_pred CCCEEEEEEeC
Confidence 99999998764
No 370
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=81.29 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=62.5
Q ss_pred cceEEEcCCC----CCCCH----HHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLP----YGVRE----RDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~----~~~t~----~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..||+|.-++ .+.-. .+|.+.|..||+|..+++..+.+||+|.+.++|.+|++ |||..+.|+.|+|+++.+
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 4678887665 23444 67899999999999999999999999999999999996 999999999999999876
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 86 d 86 (91)
T 2dnr_A 86 S 86 (91)
T ss_dssp S
T ss_pred C
Confidence 4
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.31 E-value=9.1e-12 Score=100.54 Aligned_cols=75 Identities=20% Similarity=0.249 Sum_probs=63.9
Q ss_pred CCCCceEEEcC--CCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccC---Cc--eEEE
Q psy10320 110 TRSDHRLIVEN--LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELN---GR--RIRL 182 (262)
Q Consensus 110 ~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~---g~--~~~v 182 (262)
..+..+|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|++.|||.++. |+ .+.+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEE
Confidence 44467999999 578999999999999999999988765 6899999999999999999999999873 44 4555
Q ss_pred eec
Q psy10320 183 IED 185 (262)
Q Consensus 183 ~~~ 185 (262)
.+.
T Consensus 94 ~~~ 96 (345)
T 3tht_A 94 NFV 96 (345)
T ss_dssp EEC
T ss_pred EEe
Confidence 554
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=1.2e-11 Score=83.96 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=63.6
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHHhhcCCceEEEecccC-CCceEEEEecCHHHHHHHHHHhCCcccCCce
Q psy10320 111 RSDHRLIVENLSSRV----------SWQDLKDFMRQVGEVCYADAHKR-HRNEGVVEFESSSDMKKALDKLDNAELNGRR 179 (262)
Q Consensus 111 ~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~i~~~~~~~~-~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~ 179 (262)
.+...|.+.|+=... .+++|+++|++||.|..+.+... .+|++||+|.+.++|.+|+..|||.+++|+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~ 84 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKM 84 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345678888874322 23678999999999999988743 4799999999999999999999999999999
Q ss_pred EEEeecC
Q psy10320 180 IRLIEDK 186 (262)
Q Consensus 180 ~~v~~~~ 186 (262)
|.|.+..
T Consensus 85 i~v~~~~ 91 (114)
T 3s6e_A 85 ITAAYVP 91 (114)
T ss_dssp CEEEEEC
T ss_pred EEEEEEc
Confidence 9998764
No 373
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=8.3e-12 Score=85.44 Aligned_cols=74 Identities=16% Similarity=0.156 Sum_probs=63.2
Q ss_pred CceEEEcCCCC--C---CCHHHHHHHhhcCCceEEEecccC---------CCceEEEEecCHHHHHHHHHHhCCcccCCc
Q psy10320 113 DHRLIVENLSS--R---VSWQDLKDFMRQVGEVCYADAHKR---------HRNEGVVEFESSSDMKKALDKLDNAELNGR 178 (262)
Q Consensus 113 ~~~l~v~nl~~--~---~~~~~l~~~f~~~g~i~~~~~~~~---------~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~ 178 (262)
..+|++.|+-. + -.+++|+++|++||.|..+.+... .+|++||+|.+.++|.+|+..|||.+++|+
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR 99 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 99 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 56899999842 2 236899999999999999988732 248999999999999999999999999999
Q ss_pred eEEEeecC
Q psy10320 179 RIRLIEDK 186 (262)
Q Consensus 179 ~~~v~~~~ 186 (262)
.|.+.+..
T Consensus 100 ~i~v~~~~ 107 (118)
T 3ue2_A 100 KVVAEVYD 107 (118)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEcC
Confidence 99998764
No 374
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.28 E-value=1.6e-12 Score=87.23 Aligned_cols=68 Identities=25% Similarity=0.286 Sum_probs=57.5
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCceEEEeccc----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEE
Q psy10320 118 VENLSSRVSWQDLKDFM------------RQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181 (262)
Q Consensus 118 v~nl~~~~~~~~l~~~f------------~~~g~i~~~~~~~----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~ 181 (262)
+.||+..+++++|++.| ++||.|..+.+.. ..+|+|||+|.+.++|.+|+..|||..++|+.|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667777666555 9999999999874 3589999999999999999999999999999999
Q ss_pred Eeec
Q psy10320 182 LIED 185 (262)
Q Consensus 182 v~~~ 185 (262)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8875
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.7e-11 Score=76.80 Aligned_cols=70 Identities=20% Similarity=0.223 Sum_probs=60.2
Q ss_pred cceEEEcCCCCC-----CCH----HHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYG-----VRE----RDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~-----~t~----~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
..||+|.-++.. +-. .+|.+.|..||+|..+++...-+||+|.+.++|.+||+ |||..+.|+.|.|.+..
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTEEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCcEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 468999877642 223 56889999999999999998889999999999999996 99999999999998653
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.3e-10 Score=77.77 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=64.0
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhcCCceEEEecccCCCceEEEEecC-HHHHHHHHHHhC--CcccCCceEEEe
Q psy10320 110 TRSDHRLIVENLSSR-VSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFES-SSDMKKALDKLD--NAELNGRRIRLI 183 (262)
Q Consensus 110 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~-~~~a~~a~~~l~--g~~~~g~~~~v~ 183 (262)
..+++.|+|+||+.. ++.++|+++|++||+|.+|++..... .|||.|.+ +.+|..|+..|+ +..|.|..+.+.
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 344789999999999 99999999999999999999985543 69999999 899999999995 778899887764
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=1.7e-10 Score=73.39 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=59.9
Q ss_pred CceEEEcCCC----CCCCH----HHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEee
Q psy10320 113 DHRLIVENLS----SRVSW----QDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIE 184 (262)
Q Consensus 113 ~~~l~v~nl~----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~ 184 (262)
..+|+|...+ .++.+ .+|.+.|.+||.|..+.+... .+||+|.+.++|.+|+. |+|..++|+.|+|..
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d---~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED---KMWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS---SEEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC---CEEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 3467776655 23444 679999999999999998753 39999999999999998 999999999999999
Q ss_pred cCCC
Q psy10320 185 DKPR 188 (262)
Q Consensus 185 ~~~~ 188 (262)
+.+.
T Consensus 83 kt~d 86 (91)
T 2dnr_A 83 KSPS 86 (91)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.97 E-value=2.3e-09 Score=82.17 Aligned_cols=61 Identities=25% Similarity=0.331 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHhcCCceeEEEee------------CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 14 GVRERDLEKFVKGYGRIRDVILK------------NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 14 ~~t~~~l~~~F~~~G~v~~v~i~------------~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
.-.+++|.+.|++||.|..+.|. +|++||+|.+.++|.+|+..|||.+|.|+.|.+.+...
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 45678899999999999999983 48999999999999999999999999999999999863
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=9.1e-10 Score=70.40 Aligned_cols=70 Identities=19% Similarity=0.293 Sum_probs=58.5
Q ss_pred CceEEEcCCCCC-----CCH----HHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 113 DHRLIVENLSSR-----VSW----QDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 113 ~~~l~v~nl~~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
..+|+|..++.. +.+ .+|.+.|.+||.|..+.+.... +||+|.+.++|.+||. |+|.+++|+.|+|.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~ 90 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKGRAVKIS 90 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETTEEEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCCeEEEEe
Confidence 457888877632 333 5689999999999999887544 9999999999999998 99999999999998
Q ss_pred ecC
Q psy10320 184 EDK 186 (262)
Q Consensus 184 ~~~ 186 (262)
...
T Consensus 91 ~k~ 93 (95)
T 1ufw_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ccC
Confidence 754
No 380
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=4.3e-08 Score=63.43 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=62.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhc-C----CceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKG-Y----GRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~-~----G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..+|.|.|||+.+.++.|.-+|+. - |+|..|....+-|+|.|.+.+.|+..+ ......|++..|.|.+...
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL-~k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVL-AQADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHH-TCSCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHh-cCCcceecCeEEEEEcCCC
Confidence 579999999999999999999987 2 689999998899999999999999998 6556789999999987554
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.77 E-value=5e-08 Score=63.59 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=64.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC-----CceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGY-----GRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~-----G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
..+|-|-|||-.+++..|+.+++++ |.+..|.+. -+-|+|+|.+...|-+|.-.|+|..|.|+.|.+.-..
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 4688999999999999999999999 999999885 5789999999999999998999999999999997543
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.61 E-value=8e-08 Score=73.53 Aligned_cols=62 Identities=18% Similarity=0.107 Sum_probs=55.2
Q ss_pred CCHHHHHHHhhcCCceEEEecc----c-----CCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecC
Q psy10320 125 VSWQDLKDFMRQVGEVCYADAH----K-----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDK 186 (262)
Q Consensus 125 ~~~~~l~~~f~~~g~i~~~~~~----~-----~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~ 186 (262)
-.+++|.+.|.+||.|..+.+. . ..+|++||+|.+.++|.+|+..|+|.+++|+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4567899999999999999886 2 457899999999999999999999999999999998764
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.6e-07 Score=59.58 Aligned_cols=70 Identities=20% Similarity=0.210 Sum_probs=63.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcC-----CceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEe
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQV-----GEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~ 183 (262)
..+|-+-|||..+++..|+.+.+.+ |.+..+.+..+. +-|+|+|.+...|.+|.-+|+|.+|.|+.|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH-~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF-NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT-TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC-CceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 4589999999999999999999999 999888887654 679999999999999999999999999999873
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=8.4e-07 Score=57.72 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=62.4
Q ss_pred ccceEEEcCCCCCC-C----HHHHHHHHhcCCceeEEEeeC--cEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEccC
Q psy10320 2 VGTKVYIGGLPYGV-R----ERDLEKFVKGYGRIRDVILKN--GFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKG 74 (262)
Q Consensus 2 ~~~~l~V~nl~~~~-t----~~~l~~~F~~~G~v~~v~i~~--g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~~ 74 (262)
..++|+|.||+..+ . .+.++++|..|+++.....-+ .-..|.|.++++|.+|-..|++..|.|+.|.|.++..
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 36899999998754 2 256789999999888777643 3578999999999999999999999999999999984
Q ss_pred C
Q psy10320 75 I 75 (262)
Q Consensus 75 ~ 75 (262)
.
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 3
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.36 E-value=1.7e-06 Score=55.44 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=53.1
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee----------CcEEEEEeCChhhHHHHHHHhcCcccCC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK----------NGFGFVEFEDYRDADDAVYELNGKSLLG 64 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~----------~g~afV~f~~~~~a~~a~~~l~~~~~~g 64 (262)
.++|.|.+||+.+||+++.+.+..+..+...... -.-|||.|.+.+++....+.++|..|.+
T Consensus 1 ~~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 1 LSKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CCEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4799999999999999999999998876554442 3579999999999999999999987744
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.09 E-value=1.2e-05 Score=51.37 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=46.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~ 58 (262)
.++| ++|+.+...||.++|..||.|.--.|....|||.|.+++.|..|+..+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEETTEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 5666 9999999999999999999776666678999999999999999997664
No 387
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=3e-05 Score=51.93 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=60.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHHhcCcccCC-ceEEEEEccC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLLG-ERVTVEIAKG 74 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~l~~~~~~g-~~l~v~~~~~ 74 (262)
.+.|.|-+.|+.. .+.|...|+.||+|.+.... ..+-.|.|.+..+|++|| ..||..|.| ..|-|.+..+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~~d 96 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCID 96 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEECCC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEECCC
Confidence 4789999999885 67788899999999998884 578999999999999999 889999985 6677877653
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.03 E-value=1.1e-05 Score=51.65 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=45.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~ 58 (262)
.++| ++|+.+...||.++|..||.|.--.|....|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv~I~WidDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEETTEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCEEEEEEcCCeEEEEecCHHHHHHHHHhcc
Confidence 4566 9999999999999999999665555568999999999999999997664
No 389
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=0.00013 Score=47.31 Aligned_cols=74 Identities=23% Similarity=0.296 Sum_probs=62.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc-----CCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQ-----VGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~-----~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
..+|.|.|||..+.++.|.-+|+. -|+|..+...+ +-|+|+|.+...|+..|+ -..+.|++..|.|....+
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLA-QADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEEECCC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhc-CCcceecCeEEEEEcCCC
Confidence 468999999999999999999987 25888888875 779999999999999985 336789999999987766
Q ss_pred CCC
Q psy10320 188 RGG 190 (262)
Q Consensus 188 ~~~ 190 (262)
+..
T Consensus 84 ~~~ 86 (104)
T 2dhx_A 84 RAP 86 (104)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 390
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.86 E-value=4.6e-05 Score=49.58 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=61.9
Q ss_pred CceEEEcCCCCCCC-----HHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCCceEEEeecCC
Q psy10320 113 DHRLIVENLSSRVS-----WQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIEDKP 187 (262)
Q Consensus 113 ~~~l~v~nl~~~~~-----~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g~~~~v~~~~~ 187 (262)
.++|+|.||+.++- .+.++++|..|+++........- .-..|.|.++++|.+|-..||+..+.|..+++-++.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF-RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF-KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT-TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc-eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 35899999987663 26789999999988776665432 3468999999999999999999999999999999874
Q ss_pred C
Q psy10320 188 R 188 (262)
Q Consensus 188 ~ 188 (262)
-
T Consensus 84 ~ 84 (104)
T 1wey_A 84 L 84 (104)
T ss_dssp S
T ss_pred C
Confidence 4
No 391
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.81 E-value=3.1e-05 Score=49.82 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=48.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe----------eCcEEEEEeCChhhHHHHHHHhcCcccCC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL----------KNGFGFVEFEDYRDADDAVYELNGKSLLG 64 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i----------~~g~afV~f~~~~~a~~a~~~l~~~~~~g 64 (262)
-+|.|+.|||.+||+++.+.+..+-++..... .-.-|||.|.+.+++....+.++|..|.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 48999999999999999988877644322221 13579999999999999999999986643
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.63 E-value=0.00043 Score=44.26 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=44.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHh
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKL 170 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l 170 (262)
....+++ ++|.++...||.++|+.||.|.--.+. -..|||.|.+++.|..|+..+
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid---DTsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID---DTSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE---TTEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc---CCeEEEEecCHHHHHHHHHhc
Confidence 3456777 999999999999999999854322221 367999999999999999866
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.39 E-value=0.00033 Score=47.53 Aligned_cols=71 Identities=17% Similarity=0.230 Sum_probs=56.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeE-EEe---------------------eCcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRD-VIL---------------------KNGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~-v~i---------------------~~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
.+.|.|-+.|+.. ...|.+.|++||.|.+ +.+ -.++..|.|.++.+|++|| ..||.
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 4678899996655 4567788999999876 211 1467799999999999999 89999
Q ss_pred ccCCceEEEEEccCC
Q psy10320 61 SLLGERVTVEIAKGI 75 (262)
Q Consensus 61 ~~~g~~l~v~~~~~~ 75 (262)
.|.|..|-|.+..+.
T Consensus 85 ii~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 85 VFNGVLLGVIPYTKD 99 (132)
T ss_dssp EETTEECEEEECCHH
T ss_pred EeCcEEEEEEECCHH
Confidence 999998888888643
No 394
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.27 E-value=0.0012 Score=42.08 Aligned_cols=63 Identities=13% Similarity=0.283 Sum_probs=52.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-cC------CCceEEEEecCHHHHHHHHHHhCCcccCC
Q psy10320 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-KR------HRNEGVVEFESSSDMKKALDKLDNAELNG 177 (262)
Q Consensus 115 ~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-~~------~~~~~~v~f~~~~~a~~a~~~l~g~~~~g 177 (262)
.|.|.+||+.++++++.+.+.....+...... ++ ...-|||.|.+.+++..-.+.++|..+.+
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 68899999999999999999998877666554 21 23468999999999999999999987654
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.26 E-value=0.0019 Score=43.21 Aligned_cols=70 Identities=16% Similarity=0.054 Sum_probs=57.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCCcccCC-ceEEEeec
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNG-RRIRLIED 185 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g-~~~~v~~~ 185 (262)
..-|.|-+.|... ...|...|++||.|..... .....+..|.|++..+|++||. .||..++| ..|-|...
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~-~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM-SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE-CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEEC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc-CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEEC
Confidence 4578888998886 5678889999999998876 3356899999999999999996 69999985 56666654
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.18 E-value=0.00053 Score=43.98 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=43.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhC
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLD 171 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~ 171 (262)
..++| ++|.++...||.++|+.||.|.--.+ . -..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wi-d--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWI-D--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEE-E--TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEE-c--CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999994433333 2 3679999999999999998764
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.89 E-value=0.00053 Score=57.41 Aligned_cols=50 Identities=20% Similarity=0.324 Sum_probs=39.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe---eCcEEEEEeCChhhHHHHH
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL---KNGFGFVEFEDYRDADDAV 54 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~a~~a~ 54 (262)
.+|+|. .|..+++.+|.++|+.||+|..+.+ ..-||.|||.+.+++..++
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~ 106 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQ 106 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHH
Confidence 578996 7999999999999999999999988 3459999999999999776
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.82 E-value=0.0017 Score=44.14 Aligned_cols=72 Identities=11% Similarity=0.215 Sum_probs=53.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEE-Eeccc------------------CCCceEEEEecCHHHHHHHHHHhCCc
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCY-ADAHK------------------RHRNEGVVEFESSSDMKKALDKLDNA 173 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~-~~~~~------------------~~~~~~~v~f~~~~~a~~a~~~l~g~ 173 (262)
...|.|-+.|.... ..+-+.|++||.|.. +.... ....+..|.|++..+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34677888876665 567788999998866 22211 134677999999999999996 7999
Q ss_pred ccCCceEEEeecC
Q psy10320 174 ELNGRRIRLIEDK 186 (262)
Q Consensus 174 ~~~g~~~~v~~~~ 186 (262)
.++|..|-|....
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877775543
No 399
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.32 E-value=0.0074 Score=38.77 Aligned_cols=65 Identities=14% Similarity=0.262 Sum_probs=49.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecc-c------CCCceEEEEecCHHHHHHHHHHhCCcccCC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-K------RHRNEGVVEFESSSDMKKALDKLDNAELNG 177 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~-~------~~~~~~~v~f~~~~~a~~a~~~l~g~~~~g 177 (262)
...|.|..||+.+|++++.+.+...-++.+.... + ....-|||.|.+.++...-.+..+|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4479999999999999988888776555433332 1 123468999999999999999999987644
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.92 E-value=0.0038 Score=52.33 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=42.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHH
Q psy10320 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALD 168 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~ 168 (262)
..|+|. .|..+++.+|.++|++||+|..+.+.....-||.|||++.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 579997 799999999999999999999999988777899999999999887764
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=95.76 E-value=0.027 Score=48.12 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=48.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcC
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
.+++|+ +|+.+...+|.++|+.||.|.-..|....|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widdt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDDTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSSSEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcCCeEEEEECCHHHHHHHHHHHHh
Confidence 467776 9999999999999999998766677789999999999999999988753
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=95.13 E-value=0.14 Score=31.30 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=49.0
Q ss_pred ceEEEcCC-CCCCCHHHHHHHHhcCC-----ceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 4 TKVYIGGL-PYGVRERDLEKFVKGYG-----RIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 4 ~~l~V~nl-~~~~t~~~l~~~F~~~G-----~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
+||||..- -..+...+|..++..-+ .|-.|.+...|.||+-.. +.|..++..|++..+.|+.+.|+.+.
T Consensus 1 ~~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 1 MKLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CEEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CEEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 35666322 35778888888887543 477889999999999998 57889999999999999999988653
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=93.90 E-value=0.66 Score=28.83 Aligned_cols=66 Identities=15% Similarity=0.207 Sum_probs=53.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEE
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVE 70 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~ 70 (262)
.|-|.|-|+|..+-..++.-.....|---.|....|.|.|.|.+.++-..|++.|-+. .+..|.++
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyidgqamirfqnsdeqrlaiqkllnh--nnnklqie 77 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYIDGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIE 77 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECSSCEEEEESSHHHHHHHHHHHEET--TTTEEEEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeecCeeEEEecCChHHHHHHHHHHhc--CCCEEEEE
Confidence 4778899999999999998888888877788889999999999999999999776443 23344444
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.49 E-value=1.3 Score=37.77 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=44.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhC
Q psy10320 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLD 171 (262)
Q Consensus 113 ~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~ 171 (262)
...++|+ +|..+...+|.+.|+.||.+.-..+ ....|||.|.+.+.|..++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~wi---ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQISWI---DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCEEEEC---SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEE---cCCeEEEEECCHHHHHHHHHHHH
Confidence 4566666 8999999999999999996544333 34679999999999999998875
No 405
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=76.69 E-value=6 Score=23.14 Aligned_cols=55 Identities=13% Similarity=-0.005 Sum_probs=40.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCChhhHHHHHHH
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYE 56 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~a~~a~~~ 56 (262)
|...++.|.||.-.-=...|...+.. ..|..+.+. .+.+.|.|.+.++...+|+.
T Consensus 4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 44568899999777777888988988 778777764 57788888855556666644
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=75.90 E-value=6.3 Score=28.06 Aligned_cols=51 Identities=20% Similarity=0.258 Sum_probs=36.2
Q ss_pred ceEEEcCCCC-C--------CCHHHHHHHH--hcCCceeEEEe-----eCcEEEEEeCCh-hhHHHHH
Q psy10320 4 TKVYIGGLPY-G--------VRERDLEKFV--KGYGRIRDVIL-----KNGFGFVEFEDY-RDADDAV 54 (262)
Q Consensus 4 ~~l~V~nl~~-~--------~t~~~l~~~F--~~~G~v~~v~i-----~~g~afV~f~~~-~~a~~a~ 54 (262)
-+++|-|+|. . .+..+|.+.| ..|.++.-..+ ..|+|.|+|..- .--..|+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 3678889987 2 4567899977 89988765554 368899999963 3334455
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=73.63 E-value=0.56 Score=32.81 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCceeEEEeeCcEEEEEeC
Q psy10320 17 ERDLEKFVKGYGRIRDVILKNGFGFVEFE 45 (262)
Q Consensus 17 ~~~l~~~F~~~G~v~~v~i~~g~afV~f~ 45 (262)
++|+.++|...|.|+-....+||+||...
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNVRMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEETTTTEEEEEEE
T ss_pred CCcccccccceeEEEEEECCCCeeEEeeC
Confidence 35677888889999999999999999976
No 408
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.23 E-value=2.6 Score=24.54 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=16.9
Q ss_pred CceeEEEeeCcEEEEEeCCh
Q psy10320 28 GRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~~ 47 (262)
|.|+.|...+..|||.|.+-
T Consensus 28 GtV~kV~~~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDSAREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEecCCcEEEEEEccC
Confidence 67777777799999999984
No 409
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.12 E-value=17 Score=22.56 Aligned_cols=58 Identities=19% Similarity=0.295 Sum_probs=47.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcCCceEEEecccCCCceEEEEecCHHHHHHHHHHhCC
Q psy10320 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDN 172 (262)
Q Consensus 112 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~~~~v~f~~~~~a~~a~~~l~g 172 (262)
.++.+.|-|+|..+-..++--.....|---.++.+ -|.|.+.|.+.++..-|+..|-+
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi---dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI---DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC---SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee---cCeeEEEecCChHHHHHHHHHHh
Confidence 36788999999999998888777778866666654 47799999999999999988743
No 410
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=68.59 E-value=3.1 Score=24.95 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.3
Q ss_pred CceeEEEeeCcEEEEEeCCh
Q psy10320 28 GRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~~ 47 (262)
|.|..|...+..|||.|.+.
T Consensus 45 GTI~kV~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEeccCCCEEEEEEcCC
Confidence 77888888899999999985
No 411
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=67.64 E-value=15 Score=21.16 Aligned_cols=56 Identities=13% Similarity=0.147 Sum_probs=41.0
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC----hhhHHHHHHH
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED----YRDADDAVYE 56 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~----~~~a~~a~~~ 56 (262)
|...++.|.|+.-.-=...|...+.....|..+.+ ..+.+.|.|.. .++...+++.
T Consensus 1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHH
T ss_pred CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHH
Confidence 56678999999776667788889998866766655 57889999963 4455556643
No 412
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=65.19 E-value=4 Score=23.82 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=16.0
Q ss_pred CceeEEEeeCcEEEEEeCCh
Q psy10320 28 GRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~~ 47 (262)
|.|..|....+.|+|.|.+-
T Consensus 32 gtI~~V~~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKINILKQSCFIIFEDS 51 (66)
T ss_dssp EEEEEEETTTTEEEEEETTT
T ss_pred eEEEEEccCCcEEEEEEccC
Confidence 56677766789999999974
No 413
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=62.41 E-value=21 Score=22.31 Aligned_cols=31 Identities=16% Similarity=0.354 Sum_probs=24.9
Q ss_pred ceeEEEee---CcEEEEEeCChhhHHHHHHHhcC
Q psy10320 29 RIRDVILK---NGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 29 ~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
.|..+.++ +||.||++...++...++..+.|
T Consensus 39 ~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEecccCCEEEEEEecchhHHHHHHCCCC
Confidence 36677774 89999999998888888866665
No 414
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.99 E-value=1.7 Score=24.85 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=15.0
Q ss_pred CceeEEEeeCcEEEEEeCCh
Q psy10320 28 GRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~~ 47 (262)
|.|..|...+..|||.|.+-
T Consensus 26 gtV~kV~~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 26 GKIKRVSSSKQSCLVTFEDN 45 (63)
T ss_dssp EEECCCCSTTSEEEEEETTS
T ss_pred EEEEEEecCCCEEEEEEccC
Confidence 55666655688999999974
No 415
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=58.38 E-value=6.5 Score=22.20 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=16.8
Q ss_pred CceeEEEeeCcEEEEEeCChh
Q psy10320 28 GRIRDVILKNGFGFVEFEDYR 48 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~~~ 48 (262)
|.|..|......|+|.|.+..
T Consensus 22 GtI~~V~~~~~~clV~F~D~s 42 (58)
T 4hcz_A 22 GTIKKVDSAREVCLVQFEDDS 42 (58)
T ss_dssp EEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEEecCCCEEEEEEcCCC
Confidence 677777777889999999853
No 416
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=51.97 E-value=14 Score=23.74 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=22.6
Q ss_pred CCHHHHHHHHhcCCceeEEEeeCcEEE
Q psy10320 15 VRERDLEKFVKGYGRIRDVILKNGFGF 41 (262)
Q Consensus 15 ~t~~~l~~~F~~~G~v~~v~i~~g~af 41 (262)
.+++.|.++|+.+|.|..-.+--||||
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MFGg~~l 30 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMFGGFGL 30 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEETTEEEE
T ss_pred hHHHHHHHHHhccCCceEeeccCcEEE
Confidence 467889999999999998888777665
No 417
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=46.68 E-value=21 Score=22.75 Aligned_cols=63 Identities=21% Similarity=0.250 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHh-cCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 10 GLPYGVRERDLEKFVK-GYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 10 nl~~~~t~~~l~~~F~-~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
.++-.+.-+||..-.. .||.-.++.....-+.|-..+.++-.+||+.|+-. -.-+.|+|-+..
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~ 86 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVI 86 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEE
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecceEEEeccCHHHHHHHHHHHccC-CcccceEEEEec
Confidence 4567788889887665 68988888887788899999999999999888764 233334444333
No 418
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=46.56 E-value=64 Score=21.69 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=30.2
Q ss_pred HHHHHHHhhcCC-ceEEEecc-cCCCceEEEEecCHHHHHHHHHHhCCccc
Q psy10320 127 WQDLKDFMRQVG-EVCYADAH-KRHRNEGVVEFESSSDMKKALDKLDNAEL 175 (262)
Q Consensus 127 ~~~l~~~f~~~g-~i~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~l~g~~~ 175 (262)
-..+.+.+...| .|..+... ...+..+.+.+++.+.|.++|.. .|..+
T Consensus 86 la~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 86 LAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 345666666666 45444333 33456677889999999888875 45443
No 419
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=46.49 E-value=40 Score=19.28 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=39.6
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC----hhhHHHHHHHh
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED----YRDADDAVYEL 57 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~----~~~a~~a~~~l 57 (262)
|...++.|.++.-..-...|...+.....|..+.+ ..+.+.|.|.. .+....+++.+
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHc
Confidence 55678889998766666778888988766766665 47888899864 23444555443
No 420
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=46.22 E-value=12 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcC
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGY 27 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~ 27 (262)
.++|.|.+.+..++.++..+++..|
T Consensus 19 Pvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 19 PVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCEEEESSCCEECCHHHHHHHHHHH
T ss_pred CeEEEeecCCccCCHHHHHHHHHHH
Confidence 3689999999999999999999888
No 421
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.56 E-value=34 Score=24.35 Aligned_cols=45 Identities=24% Similarity=0.283 Sum_probs=32.8
Q ss_pred eEEEcCCCC-C--------CCHHHHHHHh--hcCCceEEEecc--cCCCceEEEEecC
Q psy10320 115 RLIVENLSS-R--------VSWQDLKDFM--RQVGEVCYADAH--KRHRNEGVVEFES 159 (262)
Q Consensus 115 ~l~v~nl~~-~--------~~~~~l~~~f--~~~g~i~~~~~~--~~~~~~~~v~f~~ 159 (262)
++.|.|+|. . ....+|.+.| ..|.++....+. ....|++.|+|..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecC
Confidence 677888886 2 3447899977 889877655555 4467889999985
No 422
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=45.09 E-value=18 Score=27.96 Aligned_cols=46 Identities=17% Similarity=0.297 Sum_probs=31.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
.+.|+|||++++..-|..++.. +.+..+ |-+-..|-|++.+ +-.|.
T Consensus 112 ~~iv~NlPy~iss~il~~ll~~-~~~~~~--------~lm~QkEva~Rl~-A~pg~ 157 (271)
T 3fut_A 112 SLLVANLPYHIATPLVTRLLKT-GRFARL--------VFLVQKEVAERMT-ARPKT 157 (271)
T ss_dssp EEEEEEECSSCCHHHHHHHHHH-CCEEEE--------EEEEEHHHHHHHT-CCTTS
T ss_pred cEEEecCcccccHHHHHHHhcC-CCCCEE--------EEEeeeeeeeecc-cCCCC
Confidence 5789999999999999999987 555433 2223346666655 44443
No 423
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=44.99 E-value=20 Score=31.66 Aligned_cols=50 Identities=20% Similarity=0.378 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHHh----cCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhcC
Q psy10320 10 GLPYGVRERDLEKFVK----GYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 10 nl~~~~t~~~l~~~F~----~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
..+.+.+--||..+|- .+|.|+.+.+. ..++++.|.+.++|..++..+-.
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~~ 410 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIAK 410 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHHH
Confidence 3455555557888883 57899998883 46789999999999998876543
No 424
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=44.76 E-value=41 Score=18.95 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=35.7
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED 46 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~ 46 (262)
|+..++.|.|+.-..-...|...+.....|..+.+ ..+.+.|.|..
T Consensus 2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~ 49 (73)
T 1mwy_A 2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADN 49 (73)
T ss_dssp CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESS
T ss_pred CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECC
Confidence 66678899999766666778888988766776666 47888899876
No 425
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=43.02 E-value=13 Score=21.72 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=13.9
Q ss_pred CceeEEEeeCcEEEEEeCChh
Q psy10320 28 GRIRDVILKNGFGFVEFEDYR 48 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~~~ 48 (262)
|.| |...+..|||.|++..
T Consensus 34 GtI--Vd~~~~~ClV~FeD~S 52 (69)
T 2xk0_A 34 GTI--IDQTSDQYLIRFDDQS 52 (69)
T ss_dssp EEE--EEECSSCEEEEETTCC
T ss_pred EEE--EecCCceEEEEecCCc
Confidence 455 4456899999999853
No 426
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=42.45 E-value=41 Score=18.23 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=33.4
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED 46 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~ 46 (262)
|+..++.|.|+.-..-...|...+...-.|..+.+ ..+.+.|.|..
T Consensus 1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 48 (69)
T 2qif_A 1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDA 48 (69)
T ss_dssp CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECT
T ss_pred CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECC
Confidence 56678889888655445668888887766666655 47888898874
No 427
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=42.07 E-value=44 Score=18.51 Aligned_cols=45 Identities=18% Similarity=0.222 Sum_probs=32.0
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED 46 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~ 46 (262)
...++.|.|+.-..-...|...+.....|..+.+ ..+.+.|.|..
T Consensus 5 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 51 (71)
T 2l3m_A 5 EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDS 51 (71)
T ss_dssp EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEET
T ss_pred EEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECC
Confidence 3456888888654455668888888766766666 47888898864
No 428
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=41.73 E-value=25 Score=22.72 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.9
Q ss_pred ceeEEEee---CcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 29 RIRDVILK---NGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 29 ~v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
.|..+... +||-|||=..+.++..|++.+.+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 47777763 899999999999999999666554
No 429
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=41.06 E-value=8.5 Score=29.89 Aligned_cols=43 Identities=19% Similarity=0.141 Sum_probs=29.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHH
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAV 54 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~ 54 (262)
..+.|+|||++++..-|..++.....+..+. .+-..|-|++.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~--------~m~QkEva~Rl~ 157 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQH--------FMLQNEVVERMV 157 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEE--------EEEEHHHHHHHT
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEE--------EEeeHHHHHHHh
Confidence 3578999999999999999998654444432 222345666654
No 430
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=39.59 E-value=21 Score=28.79 Aligned_cols=22 Identities=5% Similarity=-0.019 Sum_probs=19.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKG 26 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~ 26 (262)
...|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999998874
No 431
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=38.34 E-value=71 Score=19.82 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHh-cCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCceEEEEEcc
Q psy10320 10 GLPYGVRERDLEKFVK-GYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73 (262)
Q Consensus 10 nl~~~~t~~~l~~~F~-~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~v~~~~ 73 (262)
-++-.+.-++|.+-.. .||.-.++.....--.|-..+.++-++|++.|+-. ..=+.|.|-...
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDrs-~~mkSLRIlL~~ 82 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDRS-SSMKSLRILLLS 82 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECSSCEEECCSHHHHHHHHHHHHHS-TTTTEEEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceeEEeccCHHHHHHHHHHhccC-ccccceEEEEEc
Confidence 4566788889888775 68988888887777889999999999999877643 333445554444
No 432
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.77 E-value=41 Score=22.41 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=31.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCCh
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~ 47 (262)
.+.+|+|.++. ..+.++|.++...+|-...-.+.+..-+|...+.
T Consensus 24 ~g~~i~itG~~-~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~ 68 (129)
T 2d8m_A 24 QGVVVVLSGFQ-NPFRSELRDKALELGAKYRPDWTRDSTHLICAFA 68 (129)
T ss_dssp TTEEEEEESCC-TTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSS
T ss_pred CCeEEEEeCCC-cHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCC
Confidence 46789999987 6688999999999996544444455555555543
No 433
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=36.55 E-value=79 Score=19.88 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=40.7
Q ss_pred CCCCCCCHHHHHHHHh-cCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcC
Q psy10320 10 GLPYGVRERDLEKFVK-GYGRIRDVILKNGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 10 nl~~~~t~~~l~~~F~-~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
-++-.+.-++|.+-.. .||.-.++.....--.|-..+.++-++|++.|+-
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nnEL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNNELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEETTEEEECCCHHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecceeEEecccHHHHHHHHHHhcc
Confidence 3566788888888775 6898888887777788999999999999987764
No 434
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A
Probab=35.82 E-value=62 Score=18.41 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=32.9
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED 46 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~ 46 (262)
|+..++.|.|+.-..-...|...+...-.|..+.+ ..+.+.|.|..
T Consensus 2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 49 (80)
T 1jww_A 2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNP 49 (80)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECT
T ss_pred ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECC
Confidence 56677889888655455668888887766666555 47888888864
No 435
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=35.69 E-value=30 Score=26.30 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=21.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCce
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRI 30 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v 30 (262)
.+.|+|||+.++...|..++.....+
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~ 117 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAI 117 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCc
Confidence 47899999999999999988754333
No 436
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=34.81 E-value=75 Score=20.27 Aligned_cols=49 Identities=22% Similarity=0.222 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHh-cCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcC
Q psy10320 11 LPYGVRERDLEKFVK-GYGRIRDVILKNGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 11 l~~~~t~~~l~~~F~-~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
++-.+.-++|.+-.. .||.-.++.....--.|-..+.++.++|++.|+-
T Consensus 47 f~RPvkf~dl~qkv~~afGq~ldl~y~nnEL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 47 FSRPVKYEDVEHKVTTVFGQPLDLHYMNNELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp ECSSCCHHHHHHHHHHHHSSCCEEEEECSSCEEECCSHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecceEEEecccHHHHHHHHHHhcc
Confidence 456778888877665 6888777777777778888999999999987764
No 437
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=34.24 E-value=25 Score=15.43 Aligned_cols=13 Identities=23% Similarity=0.549 Sum_probs=9.8
Q ss_pred CHHHHHHHHhcCC
Q psy10320 16 RERDLEKFVKGYG 28 (262)
Q Consensus 16 t~~~l~~~F~~~G 28 (262)
...+++.+|.++|
T Consensus 13 aikqvkklfkkwg 25 (26)
T 1ytr_A 13 AIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcC
Confidence 3467888998887
No 438
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=34.19 E-value=57 Score=17.54 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=36.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCCh---hhHHHHHHH
Q psy10320 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDY---RDADDAVYE 56 (262)
Q Consensus 3 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~---~~a~~a~~~ 56 (262)
..++.|.|+.-..-...|...+.....|..+.+ ..+.+.|.|... +....+++.
T Consensus 2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~ 60 (66)
T 1yg0_A 2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLD 60 (66)
T ss_dssp EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHH
T ss_pred eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHH
Confidence 346778888655556778888888766766666 478888988643 333444433
No 439
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=33.80 E-value=25 Score=21.05 Aligned_cols=20 Identities=35% Similarity=0.654 Sum_probs=15.3
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-....+||+||.-.+
T Consensus 4 ~G~Vkwfn~~KGfGFI~~~d 23 (74)
T 2k5n_A 4 NGTITTWFKDKGFGFIKDEN 23 (74)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 36677666679999998765
No 440
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=33.34 E-value=27 Score=26.46 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=21.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCce
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRI 30 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v 30 (262)
.+.|+|||++++..-|..++.....+
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~ 122 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCV 122 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGC
T ss_pred cEEEEECchhccHHHHHHHHhcCCCC
Confidence 47899999999999999999865434
No 441
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=32.86 E-value=94 Score=19.65 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=34.4
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED 46 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~ 46 (262)
...++.|.+|.-..-...|...+...--|..+.+ ..+.+.|.|..
T Consensus 8 ~~~~l~v~Gm~C~~Ca~~Ie~~L~~~~GV~~v~v~~~~~~~~V~~~~ 54 (111)
T 2ofg_X 8 KTQQMQVGGMDCTSCKLKIEGSLERLKGVAEASVTVATGRLTVTYDP 54 (111)
T ss_dssp EEEEEEESCCCGGGTHHHHHHHHTTSSSEEEEEEETTTTEEEEEECT
T ss_pred eEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEECCCCEEEEEECC
Confidence 3457888888766667779999988766776666 47889999974
No 442
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=32.76 E-value=13 Score=28.37 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=22.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcCCceeE
Q psy10320 5 KVYIGGLPYGVRERDLEKFVKGYGRIRD 32 (262)
Q Consensus 5 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~ 32 (262)
...|+|||++++...|..++...+.+..
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~ 125 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIED 125 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChhe
Confidence 3489999999999999999987655533
No 443
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=31.96 E-value=22 Score=21.16 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=14.9
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-....+||+||.-.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (73)
T 3a0j_A 3 KGRVKWFNAEKGYGFIEREG 22 (73)
T ss_dssp EEEEEEEETTTTEEEEECTT
T ss_pred CEEEEEEECCCCEEEEecCC
Confidence 36676666679999998654
No 444
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=31.81 E-value=22 Score=20.60 Aligned_cols=19 Identities=26% Similarity=0.676 Sum_probs=14.6
Q ss_pred CceeEEEeeCcEEEEEeCC
Q psy10320 28 GRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~ 46 (262)
|.|+.....+||+||.-.+
T Consensus 3 G~Vk~fn~~kGfGFI~~~~ 21 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKDE 21 (66)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCEEEEecCC
Confidence 5666666679999998764
No 445
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=30.98 E-value=29 Score=20.72 Aligned_cols=20 Identities=20% Similarity=0.541 Sum_probs=15.2
Q ss_pred CceeEEEeeCcEEEEEeCCh
Q psy10320 28 GRIRDVILKNGFGFVEFEDY 47 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~~ 47 (262)
|.|+-....+||+||.-.+-
T Consensus 3 G~Vkwfn~~KGfGFI~~~dG 22 (74)
T 2kcm_A 3 GKVVSYLAAKKYGFIQGDDG 22 (74)
T ss_dssp EEEEEEETTTTEEEEEETTS
T ss_pred EEEEEEECCCCEEEEecCCC
Confidence 56666666799999987653
No 446
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=30.30 E-value=63 Score=26.79 Aligned_cols=58 Identities=24% Similarity=0.297 Sum_probs=38.9
Q ss_pred EEEcCCCCCC----CHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCc
Q psy10320 6 VYIGGLPYGV----RERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGE 65 (262)
Q Consensus 6 l~V~nl~~~~----t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~ 65 (262)
-+||||..-. -...+.++..+||+|..+.+- +.-+|...+++.|+.++ .-++..|.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~~k~il-~~~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG-TKTTVIVGHHQLAKEVL-IKKGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET-TEEEEEECSHHHHHHHH-TTTTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC-CCCEEEECCHHHHHHHH-HhCcHhhCCC
Confidence 3678876432 235677778899999888774 45567778899998888 3344444443
No 447
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=30.20 E-value=74 Score=17.60 Aligned_cols=46 Identities=7% Similarity=0.120 Sum_probs=33.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCChhh
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDYRD 49 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~ 49 (262)
.++.|.||.-..-...|...+.....|..+.+ ..+.+.|.|....+
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~ 51 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETT 51 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCC
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCC
Confidence 46788888766667788889998866776666 57889999854333
No 448
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=30.01 E-value=1.1e+02 Score=19.91 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=35.5
Q ss_pred CccceEEEcCCCCCCC-HHHHHHHHhcC--------CceeEEEee-----CcEEEEEeCChhhHHHHH
Q psy10320 1 MVGTKVYIGGLPYGVR-ERDLEKFVKGY--------GRIRDVILK-----NGFGFVEFEDYRDADDAV 54 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t-~~~l~~~F~~~--------G~v~~v~i~-----~g~afV~f~~~~~a~~a~ 54 (262)
|.|++|.+-+++..-. -+++.+.|... |-|-.+.+. ..-++=.|++.++|+..+
T Consensus 6 ~~m~~llqV~F~~~gP~geE~~~~f~~lA~si~~epGLiwKiWte~e~t~~aGGiYLFes~~~AeaY~ 73 (113)
T 2hiq_A 6 LRAATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYL 73 (113)
T ss_dssp ---CEEEEEEEECCCCCHHHHHHHSHHHHHHHTTSTTEEEEEEEEETTTTEEEEEEEESSHHHHHHHH
T ss_pred hhhhEeEEEEecCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCCCCeeeEEEEeCCHHHHHHHH
Confidence 5677888877765444 57788777432 556666662 345788899999998876
No 449
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.13 E-value=30 Score=21.85 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=17.8
Q ss_pred EcCCCCCCCHHHHHHHHh-cCCceeE
Q psy10320 8 IGGLPYGVRERDLEKFVK-GYGRIRD 32 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~-~~G~v~~ 32 (262)
|.+|.+.+|..||...+. ..|...+
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~~~~ 46 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGRTGR 46 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSCCSE
T ss_pred EECCCCCCcHHHHHHHHHhccCCCcc
Confidence 457889999999999654 4565433
No 450
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=28.93 E-value=34 Score=19.78 Aligned_cols=20 Identities=30% Similarity=0.670 Sum_probs=15.1
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-....+||+||.-.+
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~ 22 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVEG 22 (66)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEECCCCeEEEecCC
Confidence 36676666679999998664
No 451
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=28.24 E-value=31 Score=23.85 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=15.8
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-....+||+||.-.+
T Consensus 64 ~GtVKwFn~~KGfGFI~~dd 83 (147)
T 3aqq_A 64 KGVCKCFCRSKGHGFITPAD 83 (147)
T ss_dssp EEEEEEEETTTTEEEEEESS
T ss_pred ceEEEEEeCCCCeEEeccCC
Confidence 46777777789999999875
No 452
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=28.19 E-value=39 Score=20.58 Aligned_cols=20 Identities=15% Similarity=0.371 Sum_probs=17.3
Q ss_pred cCCCCCCCHHHHHHHHhcCC
Q psy10320 9 GGLPYGVRERDLEKFVKGYG 28 (262)
Q Consensus 9 ~nl~~~~t~~~l~~~F~~~G 28 (262)
|.|+..+|+++|.++++...
T Consensus 50 Gqi~~ki~e~~L~~lL~~i~ 69 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRVA 69 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHHS
T ss_pred CCCCCCcCHHHHHHHHHHHc
Confidence 67889999999999998763
No 453
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=28.05 E-value=36 Score=19.79 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=14.6
Q ss_pred CceeEEEeeCcEEEEEeCC
Q psy10320 28 GRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~ 46 (262)
|.|+-....+||+||.-.+
T Consensus 4 G~Vk~fn~~kGfGFI~~~~ 22 (67)
T 3cam_A 4 GIVKWFNDAKGFGFITPDE 22 (67)
T ss_dssp EEEEEEETTTTEEEEEETT
T ss_pred EEEEEEECCCCeEEEecCC
Confidence 6666666679999998664
No 454
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=27.94 E-value=40 Score=24.69 Aligned_cols=31 Identities=10% Similarity=0.092 Sum_probs=26.3
Q ss_pred eeEEEee---CcEEEEEeCChhhHHHHHHHhcCc
Q psy10320 30 IRDVILK---NGFGFVEFEDYRDADDAVYELNGK 60 (262)
Q Consensus 30 v~~v~i~---~g~afV~f~~~~~a~~a~~~l~~~ 60 (262)
|..|... +||-|||=....++..|++.+.+.
T Consensus 139 I~Si~~~d~lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 139 ILSIFQRDNYTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp CCEEECCTTSTTEEEEECSCHHHHHHHHTTCTTE
T ss_pred EEEEEecCCCcEEEEEEECCHHHHHHHHhhhhhh
Confidence 7777773 899999999999999999777775
No 455
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.56 E-value=28 Score=21.03 Aligned_cols=19 Identities=32% Similarity=0.777 Sum_probs=14.2
Q ss_pred CceeEEEeeCcEEEEEeCC
Q psy10320 28 GRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f~~ 46 (262)
|.|+-..-.+||+||.-.+
T Consensus 11 G~Vkwfn~~kGfGFI~~~~ 29 (79)
T 1h95_A 11 GTVKWFNVRNGYGFINRND 29 (79)
T ss_dssp EEEEEEETTTTEEEEEEGG
T ss_pred eEEEEEECCCCcEEEecCC
Confidence 6666666679999998654
No 456
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=27.49 E-value=81 Score=17.18 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=32.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCCh
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDY 47 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~ 47 (262)
+++.|.|+.-..-...|...+.....|..+.+ ..+.+.|.|...
T Consensus 2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~ 47 (69)
T 2kt2_A 2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPG 47 (69)
T ss_dssp CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTT
T ss_pred EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCC
Confidence 57888888666566778888888766766666 478888888753
No 457
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=27.49 E-value=48 Score=16.72 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=12.7
Q ss_pred CCCCHHHHHHHHhcC
Q psy10320 13 YGVRERDLEKFVKGY 27 (262)
Q Consensus 13 ~~~t~~~l~~~F~~~ 27 (262)
..+|.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 478999999999865
No 458
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=25.71 E-value=64 Score=27.43 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=26.8
Q ss_pred HHHHHHh--cCCceeEEEee-------CcEEEEEeCChhhHHHHHH
Q psy10320 19 DLEKFVK--GYGRIRDVILK-------NGFGFVEFEDYRDADDAVY 55 (262)
Q Consensus 19 ~l~~~F~--~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~ 55 (262)
+|..+|. .+|.|+.+.+. ...+++.|.+.++|..|+.
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~~ 262 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIVD 262 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHHH
Confidence 3566663 68999998883 2457899999888776543
No 459
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=25.42 E-value=1.1e+02 Score=17.89 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=35.5
Q ss_pred EEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHHHHhcC
Q psy10320 7 YIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 7 ~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
-|+.||..-....+.+++...|.-..|.-..+.-+|-..+++.+..|-..++-
T Consensus 5 ~v~~l~~~r~aqaf~dyL~~~~I~~~v~~~~~~~~Lwl~d~~~~~~a~~el~~ 57 (70)
T 2gqc_A 5 QVLKFPLSVDLAGFVGLLRRLNVPHRVSEESGQQVLWVPDERLAEQVRELYRR 57 (70)
T ss_dssp EEEEECTTTTGGGHHHHHHTTTCCSEEEEETTEEEEECCCSSHHHHHHHHHTT
T ss_pred eEEEECCHHHHHHHHHHHHHCCCcEEEEECCCceEEEEcCHHHHHHHHHHHHH
Confidence 45566666666677888887776555655555555777777777777666554
No 460
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=25.32 E-value=95 Score=17.27 Aligned_cols=53 Identities=11% Similarity=0.113 Sum_probs=34.7
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeC-ChhhHHHHHH
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFE-DYRDADDAVY 55 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~-~~~~a~~a~~ 55 (262)
|+..++.| |+.-..=...|...+.....| .+.+ ..+.+.|.+. ++++...+++
T Consensus 1 m~~~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~ 56 (68)
T 3iwl_A 1 MPKHEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLK 56 (68)
T ss_dssp -CEEEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHH
T ss_pred CceEEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHH
Confidence 55667888 886555566778888876556 7666 4677888875 3444555553
No 461
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=25.23 E-value=72 Score=17.47 Aligned_cols=43 Identities=12% Similarity=0.172 Sum_probs=28.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCCh
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDY 47 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~ 47 (262)
.++.|.|+.-..-...|...+... .|..+.+ ..+.+.|.|...
T Consensus 3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~ 47 (67)
T 2kyz_A 3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL 47 (67)
T ss_dssp EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH
T ss_pred EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH
Confidence 567777775444455677777766 5655555 578888988764
No 462
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=24.94 E-value=1.5e+02 Score=19.37 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=39.7
Q ss_pred ceEEEcCCCCCCCHHH---HHHHhhcCCceEEEecccCCCceEEEEe--cCHHHHHHHHHHhC
Q psy10320 114 HRLIVENLSSRVSWQD---LKDFMRQVGEVCYADAHKRHRNEGVVEF--ESSSDMKKALDKLD 171 (262)
Q Consensus 114 ~~l~v~nl~~~~~~~~---l~~~f~~~g~i~~~~~~~~~~~~~~v~f--~~~~~a~~a~~~l~ 171 (262)
..|.|.++|..+..+- .+.+-..|..-....+.+...|.--+.| ++.+...+|+..|-
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgsgsgvm~i~f~gddlea~ekalkemi 105 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGSGSGVMVIVFEGDDLEALEKALKEMI 105 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeCCceEEEEEEecCcHHHHHHHHHHHH
Confidence 3678899998876543 3334445665566677777777777777 47888888887663
No 463
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=24.91 E-value=64 Score=20.48 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=29.8
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEeeCcEEEEEe
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEF 44 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f 44 (262)
.+.+|+|.+... .+.++|.++...+|-...-.+.+..-+|..
T Consensus 17 ~g~~i~isg~~~-~~r~~l~~li~~~Gg~v~~~~s~~~THlI~ 58 (107)
T 3l3e_A 17 HKVVVCVSKKLS-KKQSELNGIAASLGADYRRSFDETVTHFIY 58 (107)
T ss_dssp TTCEEEECGGGG-GGHHHHHHHHHHTTCEEESSCCTTCCEEEC
T ss_pred CCeEEEEeCCCh-HhHHHHHHHHHHcCCEEeccccCCceEEEe
Confidence 367899988866 788999999999986544444444444444
No 464
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=24.72 E-value=45 Score=14.92 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=10.1
Q ss_pred CHHHHHHHHhcC
Q psy10320 16 RERDLEKFVKGY 27 (262)
Q Consensus 16 t~~~l~~~F~~~ 27 (262)
++.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 678899988887
No 465
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=24.59 E-value=81 Score=21.33 Aligned_cols=40 Identities=20% Similarity=0.266 Sum_probs=29.0
Q ss_pred EcCCCCCCCHHHHHHHHh-cCC--ceeEEEee------------------CcEEEEEeCCh
Q psy10320 8 IGGLPYGVRERDLEKFVK-GYG--RIRDVILK------------------NGFGFVEFEDY 47 (262)
Q Consensus 8 V~nl~~~~t~~~l~~~F~-~~G--~v~~v~i~------------------~g~afV~f~~~ 47 (262)
|-++...++++++++++. .++ .|..+.+- -+|.|+.|.+-
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 566777899999999995 454 56666661 25788888763
No 466
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=24.49 E-value=42 Score=27.61 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=30.8
Q ss_pred EEcCCCC---CCCHHHHHHHHhcCCceeEEEeeCcEEEEEeCChhhHHHHH
Q psy10320 7 YIGGLPY---GVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAV 54 (262)
Q Consensus 7 ~V~nl~~---~~t~~~l~~~F~~~G~v~~v~i~~g~afV~f~~~~~a~~a~ 54 (262)
+|||+.. .-....+.++..+||+|..+.+- +.-+|...+++.++.++
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g-~~~~vvv~~p~~i~~vl 69 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA-WTPVVVLNGLAAVREAL 69 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET-TEEEEEEEHHHHHHHHH
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC-CeeEEEECCHHHHHHHH
Confidence 3566542 22344567788899999888774 33446667788887776
No 467
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=30.11 E-value=16 Score=22.88 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=18.9
Q ss_pred CcEEEEEeCChhhHHHHHHHhcC
Q psy10320 37 NGFGFVEFEDYRDADDAVYELNG 59 (262)
Q Consensus 37 ~g~afV~f~~~~~a~~a~~~l~~ 59 (262)
.|.|.|.|.+.++-..|++.|-+
T Consensus 77 egqamirfqnsdeqrlaiqklln 99 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKLLN 99 (137)
Confidence 68999999999888888866543
No 468
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=24.00 E-value=46 Score=19.54 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=15.7
Q ss_pred CCceeEEEeeCcEEEEEeCC
Q psy10320 27 YGRIRDVILKNGFGFVEFED 46 (262)
Q Consensus 27 ~G~v~~v~i~~g~afV~f~~ 46 (262)
.|.|+-....+||+||.-.+
T Consensus 7 ~G~Vk~fn~~kGfGFI~~~~ 26 (71)
T 3i2z_B 7 KGNVKWFNESKGFGFITPED 26 (71)
T ss_dssp EEEEEEEETTTTEEEEEETT
T ss_pred cEEEEEEECCCCcEEEecCC
Confidence 47777777779999998765
No 469
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=23.86 E-value=85 Score=18.83 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHhcCCc-eeEEEeeCcEEEEEeCChhhHHHHHHHhcCcccCCce
Q psy10320 14 GVRERDLEKFVKGYGR-IRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGER 66 (262)
Q Consensus 14 ~~t~~~l~~~F~~~G~-v~~v~i~~g~afV~f~~~~~a~~a~~~l~~~~~~g~~ 66 (262)
--|+++|+.+++.|-. ...|+ .+|...+.++..+|.+..+.+.|+-+.
T Consensus 32 vktedelkkyleefrkesqnik-----vlilvsndeeldkakelaqkmeidvrt 80 (110)
T 2kpo_A 32 VKTEDELKKYLEEFRKESQNIK-----VLILVSNDEELDKAKELAQKMEIDVRT 80 (110)
T ss_dssp CCSHHHHHHHHHHHTSSTTSEE-----EEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred eccHHHHHHHHHHHHhhccCeE-----EEEEEcChHHHHHHHHHHHhhceeeee
Confidence 4589999999888742 22222 345566777777777666666655443
No 470
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=23.86 E-value=32 Score=20.46 Aligned_cols=15 Identities=27% Similarity=0.578 Sum_probs=12.5
Q ss_pred CHHHHHHHHhcCCce
Q psy10320 16 RERDLEKFVKGYGRI 30 (262)
Q Consensus 16 t~~~l~~~F~~~G~v 30 (262)
|-=||.+++.+||.+
T Consensus 4 tlYDVqQLLK~fG~~ 18 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHI 18 (72)
T ss_dssp SHHHHHHHHHTTTCC
T ss_pred cHHHHHHHHHHCCEE
Confidence 456899999999976
No 471
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=23.50 E-value=72 Score=20.43 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=20.2
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCc
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGR 29 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~ 29 (262)
.+.++||.+..+......|..++-.||-
T Consensus 9 ~g~~f~l~~~~p~~~r~~l~ryiia~GG 36 (104)
T 3pc6_A 9 EGKHFFLYGEFPGDERRRLIRYVTAFNG 36 (104)
T ss_dssp TTCEEEEESCCSTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHcCC
Confidence 4678888877665566777777777763
No 472
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=22.95 E-value=1.5e+02 Score=18.68 Aligned_cols=55 Identities=11% Similarity=0.036 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHhcC--------CceeEEEe-------------eC-cEEEEEeCChhhHHHHHHHhcCcccCCceEE
Q psy10320 12 PYGVRERDLEKFVKGY--------GRIRDVIL-------------KN-GFGFVEFEDYRDADDAVYELNGKSLLGERVT 68 (262)
Q Consensus 12 ~~~~t~~~l~~~F~~~--------G~v~~v~i-------------~~-g~afV~f~~~~~a~~a~~~l~~~~~~g~~l~ 68 (262)
.+.++++++.++.+.| |.|..+.- .. .|.++.|....++..-++. ...++..-|.
T Consensus 11 ~p~l~~e~~~~~~~~~~~~i~~~gg~i~~~e~wG~R~LAY~I~k~~~G~Y~l~~f~a~~~~i~eler--~lr~~~~VlR 87 (101)
T 1cqm_A 11 NPNLDQSQLALEKEIIQRALENYGARVEKVAILGLRRLAYPIAKDPQGYFLWYQVEMPEDRVNDLAR--ELRIRDNVRR 87 (101)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECHHHHHHHHH--HHHTSTTEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCcccccCcCCCCEEEEEEEEEEeChHHHHHHHH--HhcCCcceEE
Confidence 5678888888776655 45655543 12 4778888876555554432 1234444443
No 473
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=22.81 E-value=1.1e+02 Score=16.92 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=33.1
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED 46 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~ 46 (262)
...++.|.|+.-..-...|...+.....|..+.+ ..+.+.|.|..
T Consensus 6 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~ 52 (76)
T 1opz_A 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDP 52 (76)
T ss_dssp EEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECT
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECC
Confidence 3457889998766666778888888766766655 57888888864
No 474
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=22.77 E-value=51 Score=20.12 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=16.4
Q ss_pred cCCCCCCCHHHHHHHHhcC
Q psy10320 9 GGLPYGVRERDLEKFVKGY 27 (262)
Q Consensus 9 ~nl~~~~t~~~l~~~F~~~ 27 (262)
|.|+..+|+++|.+++...
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5788899999999999765
No 475
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=22.08 E-value=1.2e+02 Score=25.58 Aligned_cols=48 Identities=23% Similarity=0.155 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHh----cCCceeEEEee-------CcEEEEEeCChhhHHHHHHHhc
Q psy10320 11 LPYGVRERDLEKFVK----GYGRIRDVILK-------NGFGFVEFEDYRDADDAVYELN 58 (262)
Q Consensus 11 l~~~~t~~~l~~~F~----~~G~v~~v~i~-------~g~afV~f~~~~~a~~a~~~l~ 58 (262)
+..+.+.-+|..+|- .||.|..+.+. ...+++.|.+.++|..++..+.
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~ 252 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIAQ 252 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHHH
Confidence 334444446677764 46788888873 3568899999999999886653
No 476
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=21.67 E-value=1.4e+02 Score=17.89 Aligned_cols=46 Identities=9% Similarity=0.094 Sum_probs=34.1
Q ss_pred CccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC
Q psy10320 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED 46 (262)
Q Consensus 1 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~ 46 (262)
|+..++.|.++.-..-...|...+.....|..+.+ ..+.+.|.|..
T Consensus 15 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~ 62 (95)
T 2kkh_A 15 LQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDS 62 (95)
T ss_dssp SEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECT
T ss_pred eEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECC
Confidence 34467889898766667778888887766766665 57888899864
No 477
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=21.65 E-value=1e+02 Score=18.52 Aligned_cols=45 Identities=13% Similarity=0.093 Sum_probs=25.6
Q ss_pred ccceEEEcCCCCCCCHHHHHHHHhcCCceeEEEee--CcEEEEEeCCh
Q psy10320 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDY 47 (262)
Q Consensus 2 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~ 47 (262)
.+.+++|.++.. .+.++|.++...+|-...-.+. ...-+|.....
T Consensus 9 ~g~~~~i~g~~~-~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~ 55 (92)
T 4id3_A 9 KNCVIYINGYTK-PGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNL 55 (92)
T ss_dssp TTCEEEECSCCS-SCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCC
T ss_pred CCEEEEEeCCCC-cCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCC
Confidence 367788887543 2577788888887743332232 34444444443
No 478
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=21.48 E-value=61 Score=21.67 Aligned_cols=52 Identities=19% Similarity=0.230 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCC-ceeEEEeeCcEEEEEeCChhhHHHHHHHh
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYG-RIRDVILKNGFGFVEFEDYRDADDAVYEL 57 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G-~v~~v~i~~g~afV~f~~~~~a~~a~~~l 57 (262)
..++|-..|++....-|-..+...| .|.+-.-..|.-||.|..+++ -....|
T Consensus 14 ~p~l~l~~~fdraW~rvg~ALdr~Gf~V~Drdrs~G~y~V~Y~~~~~--gf~~~l 66 (127)
T 2yh5_A 14 LPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSD--SDWQEL 66 (127)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHTTEEEEEEEGGGTEEEEEECCCCH--HHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHhCCCeEEeeeccCeEEEEEeCCCCc--chHHHh
Confidence 3455567788888888888899888 688888899999999998874 333444
No 479
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=21.09 E-value=1.4e+02 Score=17.75 Aligned_cols=54 Identities=11% Similarity=0.214 Sum_probs=35.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcCCceeEEEe--eCcEEEEEeCC----hhhHHHHHHHh
Q psy10320 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFED----YRDADDAVYEL 57 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~----~~~a~~a~~~l 57 (262)
.++.|.+|.-..-...|...+...-.|..+.+ ..+.+.|.|.. .++...+++.+
T Consensus 5 ~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence 46777777544445668888888766776666 57889999864 34445555443
No 480
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=20.65 E-value=46 Score=20.76 Aligned_cols=17 Identities=29% Similarity=0.693 Sum_probs=11.6
Q ss_pred CceeEEEeeCcEEEEEe
Q psy10320 28 GRIRDVILKNGFGFVEF 44 (262)
Q Consensus 28 G~v~~v~i~~g~afV~f 44 (262)
|.|+-....+||+||.-
T Consensus 11 G~VKWFn~~KGfGFI~~ 27 (90)
T 3ulj_A 11 GHCKWFNVRMGFGFISM 27 (90)
T ss_dssp EEEEEEETTTTEEEEEE
T ss_pred eEEEEeeCCCCeEEeEe
Confidence 55554445699999964
No 481
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=20.63 E-value=1.7e+02 Score=18.57 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=39.3
Q ss_pred ceEEEcCCCCCCCHHH--HHHHH----h-cCCc--------eeEEEee----------CcEEEEEeCChhh---HHHHHH
Q psy10320 4 TKVYIGGLPYGVRERD--LEKFV----K-GYGR--------IRDVILK----------NGFGFVEFEDYRD---ADDAVY 55 (262)
Q Consensus 4 ~~l~V~nl~~~~t~~~--l~~~F----~-~~G~--------v~~v~i~----------~g~afV~f~~~~~---a~~a~~ 55 (262)
++|.|-|||..-.+.. +..+| . .|.. |..+.-. ...-.|.|....+ ...|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 6899999998743322 34443 2 2321 3333321 3466777776554 444555
Q ss_pred HhcCcccCCceEEEE
Q psy10320 56 ELNGKSLLGERVTVE 70 (262)
Q Consensus 56 ~l~~~~~~g~~l~v~ 70 (262)
......+.|..|.+.
T Consensus 84 ~k~~vtykg~pirls 98 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHCCEEETTEEEEEE
T ss_pred HhCceeeCCcceeec
Confidence 566678899988875
No 482
>2uwq_A Apoptosis-stimulating of P53 protein 2; ASPP2, ubiquitin-like, SH3-domain, cell cycle, ANK repeat, SH3-binding; NMR {Homo sapiens}
Probab=20.44 E-value=57 Score=20.17 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=14.0
Q ss_pred CCCCCCCHHHHHHHHhcCCc
Q psy10320 10 GLPYGVRERDLEKFVKGYGR 29 (262)
Q Consensus 10 nl~~~~t~~~l~~~F~~~G~ 29 (262)
+|.+.+|..||.++....|.
T Consensus 24 gvT~~TTC~DVVaL~~~~G~ 43 (86)
T 2uwq_A 24 PVTPETICRDVVDLCKEPGE 43 (86)
T ss_dssp EECTTCBSHHHHHHSCSSCS
T ss_pred CCCCCCcHHHHHHHHHccCC
Confidence 55667788888866666665
Done!