Your job contains 1 sequence.
>psy10320
MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK
SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN
LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI
RLIEDKPRGGGRGRSRSSSSRSRSKSRSRSRSSKSRSPRSRSKSGSPRKSKSKAKSVSRS
PSPSKTRKRSRSRSDSRARKVS
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10320
(262 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0004587 - symbol:B52 "B52" species:7227 "Drosophil... 663 4.1e-65 1
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 593 1.1e-57 1
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 593 1.1e-57 1
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 593 1.1e-57 1
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 593 1.1e-57 1
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 593 1.1e-57 1
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 589 2.8e-57 1
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 585 7.5e-57 1
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 585 7.5e-57 1
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 585 7.5e-57 1
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 582 1.6e-56 1
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 582 1.6e-56 1
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 576 6.8e-56 1
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 576 6.8e-56 1
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 576 6.8e-56 1
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 568 4.8e-55 1
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 567 6.1e-55 1
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 564 1.3e-54 1
ZFIN|ZDB-GENE-040718-354 - symbol:srsf5b "serine/arginine... 543 2.1e-52 1
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 542 2.7e-52 1
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 542 2.7e-52 1
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 542 2.7e-52 1
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 542 2.7e-52 1
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 542 2.7e-52 1
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 542 2.7e-52 1
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 542 2.7e-52 1
UNIPROTKB|E1BY00 - symbol:SRSF5 "Uncharacterized protein"... 511 5.2e-49 1
UNIPROTKB|F1NJ04 - symbol:SRSF4 "Uncharacterized protein"... 489 1.1e-46 1
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 486 2.3e-46 1
UNIPROTKB|F1PEZ0 - symbol:SRSF4 "Uncharacterized protein"... 483 4.8e-46 1
UNIPROTKB|F1NJ03 - symbol:SRSF4 "Uncharacterized protein"... 482 6.2e-46 1
UNIPROTKB|F1LSN0 - symbol:Srsf4 "Protein Sfrs4" species:1... 481 7.9e-46 1
WB|WBGene00004699 - symbol:rsp-2 species:6239 "Caenorhabd... 441 1.4e-41 1
UNIPROTKB|Q23120 - symbol:rsp-2 "Probable splicing factor... 441 1.4e-41 1
UNIPROTKB|E1C270 - symbol:E1C270 "Uncharacterized protein... 435 5.9e-41 1
WB|WBGene00004698 - symbol:rsp-1 species:6239 "Caenorhabd... 415 7.8e-39 1
UNIPROTKB|Q23121 - symbol:rsp-1 "Probable splicing factor... 415 7.8e-39 1
UNIPROTKB|F6T1J1 - symbol:SRSF4 "Serine/arginine-rich-spl... 387 7.2e-36 1
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 353 2.9e-32 1
UNIPROTKB|B4DUA4 - symbol:SRSF5 "cDNA FLJ57437, highly si... 353 2.9e-32 1
POMBASE|SPAC16.02c - symbol:srp2 "mRNA export factor Srp2... 351 4.7e-32 1
UNIPROTKB|F1M582 - symbol:F1M582 "Uncharacterized protein... 350 6.0e-32 1
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 347 1.3e-31 1
ZFIN|ZDB-GENE-040426-1950 - symbol:srsf1a "serine/arginin... 330 7.9e-30 1
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 328 1.3e-29 1
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 328 1.3e-29 1
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 328 1.3e-29 1
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 328 1.3e-29 1
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 328 1.3e-29 1
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 328 1.3e-29 1
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 328 1.3e-29 1
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 328 1.3e-29 1
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 328 1.3e-29 1
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 328 1.3e-29 1
UNIPROTKB|Q5ZML3 - symbol:SRSF1 "Serine/arginine-rich spl... 327 1.6e-29 1
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 327 1.6e-29 1
ZFIN|ZDB-GENE-040426-2397 - symbol:srsf9 "serine/arginine... 313 5.0e-28 1
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 310 1.0e-27 1
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 310 1.0e-27 1
FB|FBgn0040284 - symbol:SF2 "SF2" species:7227 "Drosophil... 295 4.0e-26 1
TAIR|locus:2114643 - symbol:SR34a "Serine/Arginine-Rich P... 283 7.6e-25 1
UNIPROTKB|G3V5K8 - symbol:SRSF5 "Serine/arginine-rich-spl... 271 1.4e-23 1
TAIR|locus:2195346 - symbol:SR30 "Serine/Arginine-Rich Pr... 271 1.4e-23 1
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 269 2.3e-23 1
UNIPROTKB|E2RK20 - symbol:SRSF9 "Uncharacterized protein"... 268 2.9e-23 1
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 266 4.8e-23 1
UNIPROTKB|Q13242 - symbol:SRSF9 "Serine/arginine-rich spl... 265 6.1e-23 1
UNIPROTKB|F1RJJ0 - symbol:SRSF9 "Uncharacterized protein"... 265 6.1e-23 1
MGI|MGI:104896 - symbol:Srsf9 "serine/arginine-rich splic... 264 7.8e-23 1
UNIPROTKB|A4FUC6 - symbol:SFRS9 "Uncharacterized protein"... 258 3.4e-22 1
WB|WBGene00004702 - symbol:rsp-5 species:6239 "Caenorhabd... 233 1.5e-19 1
UNIPROTKB|Q10021 - symbol:rsp-5 "Probable splicing factor... 233 1.5e-19 1
UNIPROTKB|F1NQW8 - symbol:SRSF1 "Serine/arginine-rich-spl... 225 1.1e-18 1
UNIPROTKB|F1NRH9 - symbol:SRSF1 "Serine/arginine-rich-spl... 225 1.1e-18 1
GENEDB_PFALCIPARUM|PFE0865c - symbol:PFE0865c "splicing f... 220 3.6e-18 1
UNIPROTKB|Q8I3T5 - symbol:PFE0865c "Splicing factor, puta... 220 3.6e-18 1
TAIR|locus:2083936 - symbol:RS2Z32 "arginine/serine-rich ... 213 2.0e-17 1
GENEDB_PFALCIPARUM|PF10_0217 - symbol:PF10_0217 "pre-mRNA... 216 7.0e-17 1
UNIPROTKB|Q8IJI0 - symbol:PF10_0217 "Pre-mRNA splicing fa... 216 7.0e-17 1
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 205 1.4e-16 1
ASPGD|ASPL0000075947 - symbol:AN4978 species:162425 "Emer... 201 3.7e-16 1
TAIR|locus:2039975 - symbol:RS31a "arginine/serine-rich s... 146 3.2e-15 2
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 191 4.2e-15 1
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 191 4.2e-15 1
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 191 4.2e-15 1
UNIPROTKB|B4E241 - symbol:SFRS3 "Splicing factor, arginin... 191 4.2e-15 1
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 191 4.2e-15 1
UNIPROTKB|I3LAE9 - symbol:LOC100523801 "Uncharacterized p... 191 4.2e-15 1
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 191 4.2e-15 1
RGD|1309233 - symbol:Srsf3 "serine/arginine-rich splicing... 191 4.2e-15 1
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 151 6.7e-15 2
UNIPROTKB|F1RY92 - symbol:SRSF3 "Uncharacterized protein"... 187 1.1e-14 1
ASPGD|ASPL0000011897 - symbol:AN3739 species:162425 "Emer... 194 1.4e-14 1
FB|FBgn0030479 - symbol:Rbp1-like "Rbp1-like" species:722... 154 1.5e-14 2
UNIPROTKB|Q5ZMI0 - symbol:SRSF7 "Uncharacterized protein"... 184 2.3e-14 1
UNIPROTKB|J3KSR8 - symbol:SRSF1 "Serine/arginine-rich-spl... 182 3.8e-14 1
ZFIN|ZDB-GENE-030616-631 - symbol:srsf3a "serine/arginine... 182 3.8e-14 1
ZFIN|ZDB-GENE-071005-2 - symbol:srsf3b "serine/arginine-r... 181 4.9e-14 1
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl... 178 1.0e-13 1
UNIPROTKB|J9P2I8 - symbol:SRSF7 "Uncharacterized protein"... 178 1.0e-13 1
WARNING: Descriptions of 465 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 132/193 (68%), Positives = 152/193 (78%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
MVG++VY+GGLPYGVRERDLE+F KGYGR RD+++KNG+GFVEFEDYRDADDAVYELNGK
Sbjct: 1 MVGSRVYVGGLPYGVRERDLERFFKGYGRTRDILIKNGYGFVEFEDYRDADDAVYELNGK 60
Query: 61 SLLGERVTVEIAKGI------DRSQER--GRRGYGSYRAPPPRRGWGHDRDDRYGPPTRS 112
LLGERV VE A+G DR +R GRRG G R + RYGPP R+
Sbjct: 61 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKN--SRSSSRYGPPLRT 118
Query: 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDN 172
++RLIVENLSSRVSWQDLKD+MRQ GEV YADAHK+ RNEGVVEF S SDMK A++KLD+
Sbjct: 119 EYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNEGVVEFASLSDMKTAIEKLDD 178
Query: 173 AELNGRRIRLIED 185
ELNGRRI L+ED
Sbjct: 179 TELNGRRIHLVED 191
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 122/183 (66%), Positives = 142/183 (77%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y RERD+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 65 ERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
ERV VE A+G D S GR GYG YR R G D+YGPPTR+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDGSYGSGRSGYG-YR----RSG-----RDKYGPPTRTEYRLIVENLS 112
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
SR SWQDLKD+MRQ GEV YADAHK +NEGV+EF S SDMK+AL+KLD E+NGR+IRL
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
Query: 183 IED 185
+ED
Sbjct: 173 VED 175
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 122/183 (66%), Positives = 142/183 (77%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y RERD+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 65 ERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
ERV VE A+G D S GR GYG YR R G D+YGPPTR+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDGSYGSGRSGYG-YR----RSG-----RDKYGPPTRTEYRLIVENLS 112
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
SR SWQDLKD+MRQ GEV YADAHK +NEGV+EF S SDMK+AL+KLD E+NGR+IRL
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
Query: 183 IED 185
+ED
Sbjct: 173 VED 175
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 122/183 (66%), Positives = 142/183 (77%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y RERD+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 65 ERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
ERV VE A+G D S GR GYG YR R G D+YGPPTR+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDGSYGSGRSGYG-YR----RSG-----RDKYGPPTRTEYRLIVENLS 112
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
SR SWQDLKD+MRQ GEV YADAHK +NEGV+EF S SDMK+AL+KLD E+NGR+IRL
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
Query: 183 IED 185
+ED
Sbjct: 173 VED 175
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 122/183 (66%), Positives = 142/183 (77%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y RERD+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 65 ERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
ERV VE A+G D S GR GYG YR R G D+YGPPTR+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDGSYGSGRSGYG-YR----RSG-----RDKYGPPTRTEYRLIVENLS 112
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
SR SWQDLKD+MRQ GEV YADAHK +NEGV+EF S SDMK+AL+KLD E+NGR+IRL
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
Query: 183 IED 185
+ED
Sbjct: 173 VED 175
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 122/183 (66%), Positives = 142/183 (77%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y RERD+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 65 ERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
ERV VE A+G D S GR GYG YR R G D+YGPPTR+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDGSYGSGRSGYG-YR----RSG-----RDKYGPPTRTEYRLIVENLS 112
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
SR SWQDLKD+MRQ GEV YADAHK +NEGV+EF S SDMK+AL+KLD E+NGR+IRL
Sbjct: 113 SRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIEFVSYSDMKRALEKLDGTEVNGRKIRL 172
Query: 183 IED 185
+ED
Sbjct: 173 VED 175
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 120/184 (65%), Positives = 138/184 (75%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ +V LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD---DRYGPPTRSDHRLIVENL 121
ERV VE A+G R R GY SY + G+ R D+YGPP R+++RLIVENL
Sbjct: 63 ERVIVEHARG----PRRDRDGY-SYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENL 117
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IR
Sbjct: 118 SSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
Query: 182 LIED 185
LIED
Sbjct: 178 LIED 181
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 119/184 (64%), Positives = 137/184 (74%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ ++ LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD---DRYGPPTRSDHRLIVENL 121
ERV VE A+G R R GY SY + G+ R D+YGPP R++ RLIVENL
Sbjct: 63 ERVIVEHARG----PRRDRDGY-SYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENL 117
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IR
Sbjct: 118 SSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
Query: 182 LIED 185
LIED
Sbjct: 178 LIED 181
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 119/184 (64%), Positives = 137/184 (74%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ ++ LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD---DRYGPPTRSDHRLIVENL 121
ERV VE A+G R R GY SY + G+ R D+YGPP R++ RLIVENL
Sbjct: 63 ERVIVEHARG----PRRDRDGY-SYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENL 117
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IR
Sbjct: 118 SSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
Query: 182 LIED 185
LIED
Sbjct: 178 LIED 181
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 119/184 (64%), Positives = 137/184 (74%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ ++ LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD---DRYGPPTRSDHRLIVENL 121
ERV VE A+G R R GY SY + G+ R D+YGPP R++ RLIVENL
Sbjct: 63 ERVIVEHARG----PRRDRDGY-SYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENL 117
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IR
Sbjct: 118 SSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
Query: 182 LIED 185
LIED
Sbjct: 178 LIED 181
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 119/184 (64%), Positives = 136/184 (73%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ + LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD---DRYGPPTRSDHRLIVENL 121
ERV VE A+G R R GY SY + G+ R D+YGPP R++ RLIVENL
Sbjct: 63 ERVIVEHARG----PRRDRDGY-SYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLIVENL 117
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IR
Sbjct: 118 SSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
Query: 182 LIED 185
LIED
Sbjct: 178 LIED 181
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 118/184 (64%), Positives = 137/184 (74%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ ++ LKNG+GFVEFED RDADDAVYELN K L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD---DRYGPPTRSDHRLIVENL 121
ERV VE A+G R R GY SY + G+ R D+YGPP R+++RLIVENL
Sbjct: 63 ERVIVEHARG----PRRDRDGY-SYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENL 117
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IR
Sbjct: 118 SSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
Query: 182 LIED 185
LIED
Sbjct: 178 LIED 181
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 117/183 (63%), Positives = 136/183 (74%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ ++ LKNG+GFVEFED RDADDAVYELN K L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNSKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD---DRYGPPTRSDHRLIVENL 121
ERV VE A+G R R GY SY + G+ R D+YGPP R+++RLIVENL
Sbjct: 63 ERVIVEHARG----PRRDRDGY-SYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLIVENL 117
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR IR
Sbjct: 118 SSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNIR 177
Query: 182 LIE 184
LIE
Sbjct: 178 LIE 180
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 115/187 (61%), Positives = 138/187 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RERD+EKF KGYGRIR++ LKNGFGFVEF+DYRDADDAVYELNGK
Sbjct: 1 MSGCRVFIGRLSPHARERDVEKFFKGYGRIREINLKNGFGFVEFDDYRDADDAVYELNGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD--DRYGPPTRSDHRLIV 118
L ERVT+E A+ R G G G R P G+ R RYGPP R++HR+IV
Sbjct: 61 ELCSERVTIEHARS--RRGRGGGPGMGG-RFSPRFGGYRQSRSGGSRYGPPVRTEHRIIV 117
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGR 178
ENLSSR+SWQDLKD MR+VGEV + DAH+ +NEGVVEF S SDMK A++KLD +LNGR
Sbjct: 118 ENLSSRISWQDLKDLMRKVGEVTFVDAHRTKKNEGVVEFASHSDMKNAIEKLDGTDLNGR 177
Query: 179 RIRLIED 185
+++L ED
Sbjct: 178 KLKLYED 184
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 112/183 (61%), Positives = 137/183 (74%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYG++ + LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGKLSYHVREKDIQRFFGGYGKLMETDLKNGYGFVEFEDTRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSY--RAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
ERV VE A+G R ++ GYG + R+ D+YGPP R+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDRDGYGGGYGGFGGRSNSGYSSRSRSGRDKYGPPVRTEYRLIVENLS 122
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
SR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDM++ALDKLD ++NGR+IRL
Sbjct: 123 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSHSDMRRALDKLDVTDINGRKIRL 182
Query: 183 IED 185
+ED
Sbjct: 183 VED 185
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 117/186 (62%), Positives = 136/186 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V++G L RERD+EKF KGYGRIR++ LKNGFGFVEFED+RDADDA+YELNGK
Sbjct: 1 MSGCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGK 60
Query: 61 SLLGER-VTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVE 119
L ER VT+E A R RRG G R + RYGPP R++HR+IVE
Sbjct: 61 ELCDERRVTIEHA--------RARRGRG--RFAQRFSYYSQSGSSRYGPPVRTEHRIIVE 110
Query: 120 NLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRR 179
NLSSR+SWQDLKD MR+ GEV Y DAH+ +RNEGVVEF S SDMK AL+KLD ELNGRR
Sbjct: 111 NLSSRISWQDLKDVMRKAGEVTYVDAHRNNRNEGVVEFASYSDMKSALEKLDGTELNGRR 170
Query: 180 IRLIED 185
I+LIED
Sbjct: 171 IKLIED 176
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
Identities = 113/184 (61%), Positives = 138/184 (75%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYG++ +V LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYHVREKDIQRFFSGYGKLLEVDLKNGYGFVEFEDTRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWG-HDRD--DRYGPPTRSDHRLIVENL 121
ERV VE A+G R ++ G G R G+ R D+YGPP R+++RLIVENL
Sbjct: 63 ERVMVEHARGPRRDRD-SYGGGGGGGGGGGRSGYSSRSRTGRDKYGPPVRTEYRLIVENL 121
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDM++AL+KLD ++NGR+IR
Sbjct: 122 SSRCSWQDLKDFMRQAGEVTYADAHKERANEGVIEFRSYSDMRRALEKLDGTDINGRKIR 181
Query: 182 LIED 185
L+ED
Sbjct: 182 LVED 185
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 113/182 (62%), Positives = 138/182 (75%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
++VY+G L Y RE+D+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVY+LNGK L
Sbjct: 2 SRVYVGKLSYRAREKDVERFFKGYGKILEVDLKNGYGFVEFDDPRDADDAVYDLNGKDLC 61
Query: 64 GERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSS 123
G+RV VE G + ++ G R S R RG G DRYGPPTR+D+RLIVENLSS
Sbjct: 62 GKRVIVEHTIG--QRRDGGNRSGRSNRYG---RGGGGGGGDRYGPPTRTDYRLIVENLSS 116
Query: 124 RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLI 183
R SWQDLKD+MRQ GEV YAD +K +NEGV+EF SDMK+AL+KLD E+NGR+IRLI
Sbjct: 117 RCSWQDLKDYMRQAGEVTYADTNKGRKNEGVIEFRQYSDMKRALEKLDGTEVNGRKIRLI 176
Query: 184 ED 185
ED
Sbjct: 177 ED 178
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 111/184 (60%), Positives = 135/184 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +++IG L RE+D+E+F KGYGRIRD+ LK GFGFVEF+D RDA+DAVYEL+GK
Sbjct: 1 MSGCRIFIGRLNPSAREKDVERFFKGYGRIRDIDLKRGFGFVEFDDPRDAEDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R + RG RG G P R G G R PP R+++RLIVEN
Sbjct: 61 ELCNERVTIEHA----RVRLRGGRGRGGGGRFPARYGRGSQDSRRNPPPMRTENRLIVEN 116
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ + NEGVVEF S SD+K AL+KL E+NGR+I
Sbjct: 117 LSSRVSWQDLKDFMRQAGEVTFADAHRPNLNEGVVEFASHSDLKNALEKLSGKEINGRKI 176
Query: 181 RLIE 184
+L+E
Sbjct: 177 KLVE 180
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 113/184 (61%), Positives = 135/184 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 113/184 (61%), Positives = 135/184 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 113/184 (61%), Positives = 135/184 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 113/184 (61%), Positives = 135/184 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 113/184 (61%), Positives = 135/184 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 113/184 (61%), Positives = 135/184 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 113/184 (61%), Positives = 135/184 (73%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S D+K A++KL E+NGR+I
Sbjct: 115 LSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKI 174
Query: 181 RLIE 184
+LIE
Sbjct: 175 KLIE 178
>UNIPROTKB|E1BY00 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104103 EMBL:AADN02003156
IPI:IPI00590971 ProteinModelPortal:E1BY00
Ensembl:ENSGALT00000015342 ArrayExpress:E1BY00 Uniprot:E1BY00
Length = 266
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 110/185 (59%), Positives = 133/185 (71%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFV D RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFV---DPRDADDAVYELDGK 57
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGS-YRAPPPRRGWGHDRDDRYGPPTRSDHRLIVE 119
L ERVT+E A+ RS+ RGR Y + + PR D R PP R+++RLIVE
Sbjct: 58 ELCSERVTIEHARA--RSRGRGRGRYSDRFSSRRPRS------DRRSAPPLRTENRLIVE 109
Query: 120 NLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRR 179
NLSSRVSWQDLKDFMRQ GEV +ADAH+ NEGVVEF S SD+K A++KL E+NGR+
Sbjct: 110 NLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYSDLKNAIEKLSGKEINGRK 169
Query: 180 IRLIE 184
I+LIE
Sbjct: 170 IKLIE 174
>UNIPROTKB|F1NJ04 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02043941 IPI:IPI00574862
Ensembl:ENSGALT00000002148 Uniprot:F1NJ04
Length = 222
Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 103/171 (60%), Positives = 127/171 (74%)
Query: 17 ERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI- 75
E+++++F +G + + +GFVEF+D RDADDAVYELNGK L GERV VE A+G
Sbjct: 18 EKEVQRFQLRFGLSQSPLYT--YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPR 75
Query: 76 -DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFM 134
D S GR GYG YR R G D+YGPPTR+++RLIVENLSSR SWQDLKD+M
Sbjct: 76 RDSSYGSGRSGYG-YR----RSG-----RDKYGPPTRTEYRLIVENLSSRCSWQDLKDYM 125
Query: 135 RQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
RQ GEV YADAHK +NEGV+EF+S SDMK+AL+KLD E+NGR+IRL+ED
Sbjct: 126 RQAGEVTYADAHKGRKNEGVIEFKSYSDMKRALEKLDGTEVNGRKIRLVED 176
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
Identities = 99/162 (61%), Positives = 116/162 (71%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V++G L RERD+EKF KGYGRIR++ LKNGFGFVEFED+RDADDA+YELNGK
Sbjct: 1 MSGCRVFVGHLSSRARERDVEKFFKGYGRIREIHLKNGFGFVEFEDHRDADDAIYELNGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R RRG G R + RYGPP R++HR+IVEN
Sbjct: 61 ELCDERVTIEHA--------RARRGRG--RFAQRFSYYSQSGSSRYGPPVRTEHRIIVEN 110
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSD 162
LSSR+SWQDLKD MR+ GEV Y DAH+ +RNEGVVEF S SD
Sbjct: 111 LSSRISWQDLKDVMRKAGEVTYVDAHRNNRNEGVVEFASYSD 152
>UNIPROTKB|F1PEZ0 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AAEX03001696
Ensembl:ENSCAFT00000018513 OMA:WESKTHI Uniprot:F1PEZ0
Length = 479
Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
Identities = 101/154 (65%), Positives = 118/154 (76%)
Query: 34 ILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI--DRSQERGRRGYGSYRA 91
+L + +GFVEF+D RDADDAVYELNGK L GERV VE A+G D S GR GYG YR
Sbjct: 11 LLSSRYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYG-YR- 68
Query: 92 PPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRN 151
R G D+YGPPTR+++RLIVENLSSR SWQDLKD+MRQ GEV YADAHK +N
Sbjct: 69 ---RSG-----RDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN 120
Query: 152 EGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
EGV+EF S SDMK+AL+KLD E+NGR+IRL+ED
Sbjct: 121 EGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 154
>UNIPROTKB|F1NJ03 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KDRGETR
EMBL:AADN02043941 IPI:IPI00581723 Ensembl:ENSGALT00000002149
Uniprot:F1NJ03
Length = 439
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 100/149 (67%), Positives = 116/149 (77%)
Query: 39 FGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRR 96
+GFVEF+D RDADDAVYELNGK L GERV VE A+G D S GR GYG YR R
Sbjct: 1 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDSSYGSGRSGYG-YR----RS 55
Query: 97 GWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVE 156
G D+YGPPTR+++RLIVENLSSR SWQDLKD+MRQ GEV YADAHK +NEGV+E
Sbjct: 56 G-----RDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNEGVIE 110
Query: 157 FESSSDMKKALDKLDNAELNGRRIRLIED 185
F+S SDMK+AL+KLD E+NGR+IRL+ED
Sbjct: 111 FKSYSDMKRALEKLDGTEVNGRKIRLVED 139
>UNIPROTKB|F1LSN0 [details] [associations]
symbol:Srsf4 "Protein Sfrs4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
IPI:IPI00951281 Ensembl:ENSRNOT00000064233 ArrayExpress:F1LSN0
Uniprot:F1LSN0
Length = 492
Score = 481 (174.4 bits), Expect = 7.9e-46, P = 7.9e-46
Identities = 101/154 (65%), Positives = 117/154 (75%)
Query: 34 ILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI--DRSQERGRRGYGSYRA 91
+L +GFVEF+D RDADDAVYELNGK L GERV VE A+G D S GR GYG YR
Sbjct: 36 VLGQRYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARGPRRDGSYGSGRSGYG-YR- 93
Query: 92 PPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRN 151
R G D+YGPPTR+++RLIVENLSSR SWQDLKD+MRQ GEV YADAHK +N
Sbjct: 94 ---RSG-----RDKYGPPTRTEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKN 145
Query: 152 EGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
EGV+EF S SDMK+AL+KLD E+NGR+IRL+ED
Sbjct: 146 EGVIEFVSYSDMKRALEKLDGTEVNGRKIRLVED 179
>WB|WBGene00004699 [details] [associations]
symbol:rsp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 84/183 (45%), Positives = 127/183 (69%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG LP +RD+E F +GYG++ DVI+KNGFGFV+F+D RDADDAV++LNGK L G
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62
Query: 65 ERVTVEIAKG-IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSS 123
ERV +E + + ++ER G+ R P R+G +RY P + RL+++NLS+
Sbjct: 63 ERVILEFPRRKVGYNEERSGSGFRG-REPTFRKGGERQFSNRYSRPCSTRFRLVIDNLST 121
Query: 124 RVSWQDLKDFMRQVG-EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
R SWQD+KD +R++G E Y++AHKR+ N+ +V F S D++ A++KL +LNGR+++
Sbjct: 122 RYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKC 181
Query: 183 IED 185
++
Sbjct: 182 TDE 184
>UNIPROTKB|Q23120 [details] [associations]
symbol:rsp-2 "Probable splicing factor,
arginine/serine-rich 2" species:6239 "Caenorhabditis elegans"
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] [GO:0008406 "gonad development"
evidence=IGI] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 84/183 (45%), Positives = 127/183 (69%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG LP +RD+E F +GYG++ DVI+KNGFGFV+F+D RDADDAV++LNGK L G
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNGFGFVDFQDQRDADDAVHDLNGKELCG 62
Query: 65 ERVTVEIAKG-IDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSS 123
ERV +E + + ++ER G+ R P R+G +RY P + RL+++NLS+
Sbjct: 63 ERVILEFPRRKVGYNEERSGSGFRG-REPTFRKGGERQFSNRYSRPCSTRFRLVIDNLST 121
Query: 124 RVSWQDLKDFMRQVG-EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRL 182
R SWQD+KD +R++G E Y++AHKR+ N+ +V F S D++ A++KL +LNGR+++
Sbjct: 122 RYSWQDIKDHIRKLGIEPTYSEAHKRNVNQAIVCFTSHDDLRDAMNKLQGEDLNGRKLKC 181
Query: 183 IED 185
++
Sbjct: 182 TDE 184
>UNIPROTKB|E1C270 [details] [associations]
symbol:E1C270 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KPRSSHR
EMBL:AADN02019572 EMBL:AADN02019573 IPI:IPI00578317
ProteinModelPortal:E1C270 Ensembl:ENSGALT00000001462 Uniprot:E1C270
Length = 348
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 94/187 (50%), Positives = 122/187 (65%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ +V LKNG+ ++ D ++++L ++
Sbjct: 3 RVYIGRLSYHVREKDIQRFFSGYGRLLEVDLKNGYVYINMPGTVIEDFSLFDLPLIYIMA 62
Query: 65 ERVTVEIAKGIDRSQE------RGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIV 118
+ + I R +G G G Y + RR G D+ YGPP R++HRLIV
Sbjct: 63 KLQVYWRCREIKRQSNFISLYNKGGGG-GGYSS---RRQSGRDK---YGPPVRTEHRLIV 115
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGR 178
ENLSSR SWQDLKDFMRQ GEV YADAHK NEGV+EF S SDMK+ALDKLD E+NGR
Sbjct: 116 ENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGR 175
Query: 179 RIRLIED 185
+IRL+ED
Sbjct: 176 KIRLVED 182
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 93/200 (46%), Positives = 127/200 (63%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKS 61
+ ++YIG L V E+D+E F +GYG+IRDV+LKNGFGFVEF+D RDA+DAV++LNGK
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 62 LLGERVTVEIAK----GIDRSQ-ERGRRGYGSYRAPPPRRGWGHDRDDRY--GPPTRSD- 113
L GERV ++ +K G DR G RG + G G DR DRY GPP R
Sbjct: 61 LGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRESR 120
Query: 114 --------HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKK 165
HR++VENLSSR+SWQDLKD +R+ G + NE ++ F + SD+K+
Sbjct: 121 YGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPSDLKR 180
Query: 166 ALDKLDNAELNGRRIRLIED 185
++K D +LNGR+I++I+D
Sbjct: 181 CIEKCDGMDLNGRKIKMIDD 200
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 93/200 (46%), Positives = 127/200 (63%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKS 61
+ ++YIG L V E+D+E F +GYG+IRDV+LKNGFGFVEF+D RDA+DAV++LNGK
Sbjct: 1 MAARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNGFGFVEFDDKRDAEDAVHDLNGKE 60
Query: 62 LLGERVTVEIAK----GIDRSQ-ERGRRGYGSYRAPPPRRGWGHDRDDRY--GPPTRSD- 113
L GERV ++ +K G DR G RG + G G DR DRY GPP R
Sbjct: 61 LGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRESR 120
Query: 114 --------HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKK 165
HR++VENLSSR+SWQDLKD +R+ G + NE ++ F + SD+K+
Sbjct: 121 YGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEALLCFATPSDLKR 180
Query: 166 ALDKLDNAELNGRRIRLIED 185
++K D +LNGR+I++I+D
Sbjct: 181 CIEKCDGMDLNGRKIKMIDD 200
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
Identities = 84/129 (65%), Positives = 96/129 (74%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y RERD+E+F KGYG+I +V LKNG+GFVEF+D RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYQARERDVERFFKGYGKILEVDLKNGYGFVEFDDLRDADDAVYELNGKDLCG 62
Query: 65 ERVTVEIAKGI--DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
ERV VE A+G D S GR GYG YR R G D+YGPPTR+++RLIVENLS
Sbjct: 63 ERVIVEHARGPRRDGSYGSGRSGYG-YR----RSG-----RDKYGPPTRTEYRLIVENLS 112
Query: 123 SRVSWQDLK 131
SR SWQDLK
Sbjct: 113 SRCSWQDLK 121
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 77/128 (60%), Positives = 91/128 (71%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQ 128
LSSRVSWQ
Sbjct: 115 LSSRVSWQ 122
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 77/128 (60%), Positives = 91/128 (71%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
L ERVT+E A R++ RG RG G Y R +DR R PP R+++RLIVEN
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRYSDRFSSRRPRNDR--RNAPPVRTENRLIVEN 114
Query: 121 LSSRVSWQ 128
LSSRVSWQ
Sbjct: 115 LSSRVSWQ 122
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 79/185 (42%), Positives = 103/185 (55%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M T++++G +P D+ F KGYG+I D L NGFGFVE ED RDA D V + GK
Sbjct: 1 MSETRLFVGRIPPQATREDMMDFFKGYGQILDCKLMNGFGFVEVEDARDARDIVNDFQGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
+G R+ VE A+G R +E R S +Y P R+ RLIVEN
Sbjct: 61 EFMGSRIVVEPARGERRRRENFRESAAS----------------KYPRPRRTGFRLIVEN 104
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
LS VSWQDLKD MR+ GE + DAH+ + GVVEF + DM+ AL L+ + G+ +
Sbjct: 105 LSEDVSWQDLKDVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSLNGEVIKGQAV 164
Query: 181 RLIED 185
L ED
Sbjct: 165 TLRED 169
>UNIPROTKB|F1M582 [details] [associations]
symbol:F1M582 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00700000104103 IPI:IPI00557396
Ensembl:ENSRNOT00000034162 Uniprot:F1M582
Length = 284
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 87/151 (57%), Positives = 98/151 (64%)
Query: 35 LKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPP 94
LKNG+ F+EFED RDADDA+YELN K GER VE A+G R G R GS
Sbjct: 3 LKNGYDFMEFEDSRDADDAIYELNSKR--GERRIVEHAQG-PRCASTGSRSGGSGGYSRQ 59
Query: 95 RRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGV 154
R G RD +YGPP + L+ NLSSR SWQDLKDFMRQ GE YADAHK +EGV
Sbjct: 60 RTG----RD-KYGPPVLQNTDLL-RNLSSRSSWQDLKDFMRQ-GEGTYADAHKERTDEGV 112
Query: 155 VEFESSSDMKKALDKLDNAELNGRRIRLIED 185
+EF S SDMK AL+KLD GR I+LIED
Sbjct: 113 IEFSSYSDMKCALNKLD-----GRNIKLIED 138
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 76/129 (58%), Positives = 91/129 (70%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGS-YRAPPPRRGWGHDRDDRYGPPTRSDHRLIVE 119
L ERVT+E A+ RS+ RGR Y + + PR D R PP R+++RLIVE
Sbjct: 61 ELCSERVTIEHARA--RSRGRGRGRYSDRFSSRRPRS------DRRSAPPLRTENRLIVE 112
Query: 120 NLSSRVSWQ 128
NLSSRVSWQ
Sbjct: 113 NLSSRVSWQ 121
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 80/176 (45%), Positives = 100/176 (56%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---G--FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDG 75
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G G G RYGPP+R S++R+IV
Sbjct: 76 YDYDGYRLRVEFPRS-GRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVIV 134
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD + GVVEF DM A+ KLDN +
Sbjct: 135 SGLPPSGSWQDLKDHMREAGDVCYADVFRD--GTGVVEFVRKEDMTYAVRKLDNTK 188
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 81/176 (46%), Positives = 103/176 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R++V
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSENRVVV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 81/176 (46%), Positives = 103/176 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R++V
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSENRVVV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 81/176 (46%), Positives = 103/176 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R++V
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSENRVVV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 81/176 (46%), Positives = 103/176 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R++V
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSENRVVV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 81/176 (46%), Positives = 103/176 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R++V
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSENRVVV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 81/176 (46%), Positives = 103/176 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R++V
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSENRVVV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 81/176 (46%), Positives = 103/176 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R++V
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSENRVVV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 81/176 (46%), Positives = 103/176 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R++V
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSENRVVV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD ++ GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 82/192 (42%), Positives = 107/192 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG----FGFVEFEDYRDADDAVYELNGK 60
KVY+G LP VRE+++E YGRI+ V +K+G F FVEFED+RDA+DAV +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 61 SLLGERVTVEIAKGIDRSQERGR--RGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIV 118
G R+ VE +G+ GR + G +R R G G R GP R+ +R+IV
Sbjct: 70 EFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGG--GPQRRTGYRVIV 127
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGR 178
E L SWQDLKD MR G+VCYAD + GVVEF D+K A+ KLD+ +
Sbjct: 128 EGLPPTGSWQDLKDHMRDAGDVCYADVARD--GTGVVEFTRYEDVKYAVRKLDDTKFRSH 185
Query: 179 R-----IRLIED 185
IR+ ED
Sbjct: 186 EGETAYIRVRED 197
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 82/192 (42%), Positives = 107/192 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG----FGFVEFEDYRDADDAVYELNGK 60
KVY+G LP VRE+++E YGRI+ V +K+G F FVEFED+RDA+DAV +G
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVRARDGY 69
Query: 61 SLLGERVTVEIAKGIDRSQERGR--RGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIV 118
G R+ VE +G+ GR + G +R R G G R GP R+ +R+IV
Sbjct: 70 EFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGG--GPQRRTGYRVIV 127
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGR 178
E L SWQDLKD MR G+VCYAD + GVVEF D+K A+ KLD+ +
Sbjct: 128 EGLPPTGSWQDLKDHMRDAGDVCYADVARD--GTGVVEFTRYEDVKYAVRKLDDTKFRSH 185
Query: 179 R-----IRLIED 185
IR+ ED
Sbjct: 186 EGETAYIRVRED 197
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 82/176 (46%), Positives = 102/176 (57%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 76
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R+IV
Sbjct: 77 YDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYGPPSRRSEYRVIV 125
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD + GVVEF DM A+ KLDN +
Sbjct: 126 SGLPPSGSWQDLKDHMREAGDVCYADVFRD--GTGVVEFVRKEDMTYAVRKLDNTK 179
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 82/176 (46%), Positives = 102/176 (57%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAVY +G
Sbjct: 16 RIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 75
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
G R+ VE + R RG G G AP RG RYGPP+R S++R+IV
Sbjct: 76 YDYDGYRLRVEFPRS-GRGGGRGGGGGGGVGAP---RG-------RYGPPSRRSEYRVIV 124
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VCYAD + GVVEF DM A+ KLDN +
Sbjct: 125 SGLPPSGSWQDLKDHMREAGDVCYADVFRD--GTGVVEFVRKEDMTYAVRKLDNTK 178
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 81/192 (42%), Positives = 108/192 (56%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG-----FGFVEFEDYRDADDAVYELNG 59
++Y+G LP V+ERD+E YG+IRD+ LKN F FV FED RDA+DAV+ NG
Sbjct: 5 RIYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNG 64
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIV 118
++ VE + S+ G G G P RG R+GPPTR S+ R+IV
Sbjct: 65 YGFGDCKLRVEYPRS-SGSKFSGPAGGGGGGGGP--RG-------RFGPPTRRSEFRVIV 114
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGR 178
L SWQDLKD MR+ G+VC+AD + EGVVEF DM+ AL +LD+ E
Sbjct: 115 TGLPPTGSWQDLKDHMREAGDVCFADVQRD--GEGVVEFLRREDMEYALRRLDSTEFRSH 172
Query: 179 R-----IRLIED 185
+ IR++E+
Sbjct: 173 QGETAYIRVMEE 184
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 74/177 (41%), Positives = 102/177 (57%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGK 60
VY+G LP +RER++E YG + + LK G+ FVEF+D RDA+DA++ +G
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGY 68
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDD--RYGPPTRSDHRLIV 118
G R+ VE+A G RS + R GS+ RG G R D GP RS+ R++V
Sbjct: 69 DFDGHRLRVELAHGGRRSSDDTR---GSFNGGG--RGGGRGRGDGGSRGPSRRSEFRVLV 123
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-GVVEFESSSDMKKALDKLDNAE 174
L S SWQDLKD MR+ G+VC++ ++ R GVV++ DMK AL KLD+ E
Sbjct: 124 TGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 72/170 (42%), Positives = 95/170 (55%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGK 60
+Y+G LP +RER++E YG + + LK G+ FVEFED RDADDA+Y +G
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGY 68
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGY-GSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVE 119
G + VE+A G RS R Y G R RG G GP RS++R++V
Sbjct: 69 DFDGHHLRVELAHGGRRSSHDARGSYSGRGRGG---RGGGDGGGRERGPSRRSEYRVVVS 125
Query: 120 NLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-GVVEFESSSDMKKALD 168
L S SWQDLKD MR+ GEVC++ + R G+V++ S DMK ALD
Sbjct: 126 GLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYALD 175
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
Identities = 79/191 (41%), Positives = 105/191 (54%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G--FGFVEFEDYRDADDAVYELNGK 60
++Y+G LP +R +D++ +G++ V LKN G F FVEFED RDADDAV +G
Sbjct: 8 RIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVEFEDARDADDAVKARDGY 67
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPT-RSDHRLIVE 119
G R+ VE +G RG G+ R R G G R GPP RS +R++V
Sbjct: 68 DYDGYRLRVEFPRGGGPGSYRG----GN-RNDRSRDGGG--RMGGRGPPAKRSQYRVMVT 120
Query: 120 NLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRR 179
L + SWQDLKD MR+ G+VC+AD +K GVVEF DMK A+ KLD++
Sbjct: 121 GLPASGSWQDLKDHMREAGDVCFADTYKD--GSGVVEFLRHEDMKYAIKKLDDSRFRSHE 178
Query: 180 -----IRLIED 185
IR+ ED
Sbjct: 179 GEVAYIRVRED 189
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 71/176 (40%), Positives = 97/176 (55%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG-----FGFVEFEDYRDADDAVYELNGK 60
+Y+G LP +RE ++E YGRI D+ LK + FVEFE RDA+DA+ +G
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAIKGRDGY 68
Query: 61 SLLGERVTVEIAKGIDRSQERGRRG-YGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVE 119
+L G R+ VE+A G RRG YG G G R+G S+ R+IV
Sbjct: 69 NLDGCRLRVELAHGGRGQSSSDRRGGYGG-GGSGYGGGGGGGGSARFGVSRHSEFRVIVR 127
Query: 120 NLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-GVVEFESSSDMKKALDKLDNAE 174
L S SWQDLKD MR+ G+VC+A+ + GVV++ + DMK A+ KLD+ E
Sbjct: 128 GLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLDDTE 183
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 56/89 (62%), Positives = 66/89 (74%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
M G +V+IG L RE+D+E+F KGYGRIRD+ LK GFGFVEFED RDADDAVYEL+GK
Sbjct: 1 MSGCRVFIGRLNPAAREKDVERFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGK 60
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSY 89
L ERVT+E A R++ RG RG G Y
Sbjct: 61 ELCSERVTIEHA----RARSRGGRGRGRY 85
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 70/175 (40%), Positives = 94/175 (53%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK-----NGFGFVEFEDYRDADDAVYELNGK 60
+Y+G LP +R+ ++E YG I D+ LK G+ FVEFED RDADDA+Y +G
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGY 68
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVEN 120
G R+ VEIA G R R SY A R P RSD+R++V
Sbjct: 69 DFDGCRLRVEIAHGGRRFSPSVDRYSSSYSA------------SR-APSRRSDYRVLVTG 115
Query: 121 LSSRVSWQDLKDFMRQVGEVCYADAHKRHRN-EGVVEFESSSDMKKALDKLDNAE 174
L SWQDLKD MR+ G+VC+++ + GVV++ + DMK A+ KLD E
Sbjct: 116 LPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATE 170
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 74/173 (42%), Positives = 93/173 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYR--DADDAVYELNGKSL 62
++Y+G LP VRE+DLE YGRIR++ LKN G V F R D DA + G++
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRN- 73
Query: 63 LGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIVENL 121
G D Q R R + RA R GW R R GPPTR SD R++V L
Sbjct: 74 -----------GYDYGQCRLRVEFP--RAYGGRGGW--PRASRNGPPTRRSDFRVLVSGL 118
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD+ +
Sbjct: 119 PPSGSWQDLKDHMREAGDVCYADVQKD--GMGMVEYLRKEDMEYALRKLDDTK 169
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
Identities = 76/177 (42%), Positives = 94/177 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYR--DADDAVYELNGKSL 62
++Y+G LP VRE+DLE YGRIR++ LKN G V F R D DA + G++
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRN- 73
Query: 63 LGERVTVEIAKGIDRSQERGR----RGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLI 117
G D Q R R R YGS R GW R R GPPTR SD R++
Sbjct: 74 -----------GYDYGQCRLRVEFPRTYGS------RGGW--PRGGRNGPPTRRSDFRVL 114
Query: 118 VENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
V L SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD+ +
Sbjct: 115 VSGLPPSGSWQDLKDHMREAGDVCYADVQKD--GMGMVEYLRKEDMEYALRKLDDTK 169
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 53/84 (63%), Positives = 64/84 (76%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+VYIG L Y VRE+D+++F GYGR+ ++ LKNG+GFVEFED RDADDAVYELNGK L G
Sbjct: 3 RVYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNGYGFVEFEDSRDADDAVYELNGKELCG 62
Query: 65 ERVTVEIAKGIDRSQERGRRGYGS 88
ERV VE A+G R +R YGS
Sbjct: 63 ERVIVEHARGPRR--DRDGYSYGS 84
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 73/173 (42%), Positives = 92/173 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYR--DADDAVYELNGKSL 62
++Y+G LP VRE+DLE YGRIR++ LKN G V F R D DA + G++
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRN- 73
Query: 63 LGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIVENL 121
G D Q R R + R R GW R R GPPTR SD R++V L
Sbjct: 74 -----------GYDYGQCRLRVEFP--RTYGGRGGW--PRGGRNGPPTRRSDFRVLVSGL 118
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD+ +
Sbjct: 119 PPSGSWQDLKDHMREAGDVCYADVQKD--GVGMVEYLRKEDMEYALRKLDDTK 169
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 73/173 (42%), Positives = 92/173 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYR--DADDAVYELNGKSL 62
++Y+G LP VRE+DLE YGRIR++ LKN G V F R D DA + G++
Sbjct: 15 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRN- 73
Query: 63 LGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIVENL 121
G D Q R R + R R GW R R GPPTR SD R++V L
Sbjct: 74 -----------GYDYGQCRLRVEFP--RTYGGRGGW--PRGGRNGPPTRRSDFRVLVSGL 118
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD+ +
Sbjct: 119 PPSGSWQDLKDHMREAGDVCYADVQKD--GMGMVEYLRKEDMEYALRKLDDTK 169
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 73/173 (42%), Positives = 92/173 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYR--DADDAVYELNGKSL 62
++Y+G LP VRE+DLE YGRIR++ LKN G V F R D DA + G++
Sbjct: 16 RIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRN- 74
Query: 63 LGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIVENL 121
G D Q R R + R R GW R R GPPTR SD R++V L
Sbjct: 75 -----------GYDYGQCRLRVEFP--RTYGGRGGW--PRGARNGPPTRRSDFRVLVSGL 119
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD+ +
Sbjct: 120 PPSGSWQDLKDHMREAGDVCYADVQKD--GMGMVEYLRKEDMEYALRKLDDTK 170
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 72/173 (41%), Positives = 90/173 (52%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYR--DADDAVYELNGKSL 62
++Y+G LP VRE+DLE YGRI ++ LKN G V F R D DA + G++
Sbjct: 15 RIYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRN- 73
Query: 63 LGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR-SDHRLIVENL 121
G D Q R R + R R GW R R GPPTR SD R++V L
Sbjct: 74 -----------GYDYGQCRLRVEFP--RTYGGRGGW--PRGGRSGPPTRRSDFRVLVSGL 118
Query: 122 SSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
SWQDLKD MR+ G+VCYAD K G+VE+ DM+ AL KLD +
Sbjct: 119 PPSGSWQDLKDHMREAGDVCYADVQKD--GMGMVEYLRKEDMEYALRKLDETK 169
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 51/113 (45%), Positives = 75/113 (66%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
++Y+G +PY RERD+E+F+KGYG+I ++ +K GF FV+FED RDA+DA ++L+GK++ G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 65 E--RVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115
R+ VE+A+G R +R +GS R+P RR R R P RS R
Sbjct: 63 SSMRLVVEMARGKPRGNDR----HGS-RSPR-RRSRSPRRRSRTPPRRRSRSR 109
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 51/113 (45%), Positives = 75/113 (66%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
++Y+G +PY RERD+E+F+KGYG+I ++ +K GF FV+FED RDA+DA ++L+GK++ G
Sbjct: 3 RLYLGKIPYNARERDVERFLKGYGKINNISMKYGFAFVDFEDSRDAEDACHDLDGKTMEG 62
Query: 65 E--RVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115
R+ VE+A+G R +R +GS R+P RR R R P RS R
Sbjct: 63 SSMRLVVEMARGKPRGNDR----HGS-RSPR-RRSRSPRRRSRTPPRRRSRSR 109
>UNIPROTKB|F1NQW8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 IPI:IPI00573494 EMBL:AADN02025726
Ensembl:ENSGALT00000039052 Uniprot:F1NQW8
Length = 184
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 59/128 (46%), Positives = 72/128 (56%)
Query: 48 RDADDAVYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYG 107
RDA+DAVY +G G R+ VE + R RG G G AP RG RYG
Sbjct: 1 RDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYG 49
Query: 108 PPTR-SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKA 166
PP+R S++R+IV L SWQDLKD MR+ G+VCYAD + GVVEF DM A
Sbjct: 50 PPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GTGVVEFVRKEDMTYA 107
Query: 167 LDKLDNAE 174
+ KLDN +
Sbjct: 108 VRKLDNTK 115
>UNIPROTKB|F1NRH9 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0060048 "cardiac muscle contraction"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0000395
GeneTree:ENSGT00700000104103 EMBL:AADN02025726 IPI:IPI00819428
Ensembl:ENSGALT00000008863 OMA:EVRQEDI Uniprot:F1NRH9
Length = 192
Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
Identities = 59/128 (46%), Positives = 72/128 (56%)
Query: 48 RDADDAVYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYG 107
RDA+DAVY +G G R+ VE + R RG G G AP RG RYG
Sbjct: 1 RDAEDAVYGRDGYDYDGYRLRVEFPRS-GRGTGRGGGGGGGGGAP---RG-------RYG 49
Query: 108 PPTR-SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKA 166
PP+R S++R+IV L SWQDLKD MR+ G+VCYAD + GVVEF DM A
Sbjct: 50 PPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GTGVVEFVRKEDMTYA 107
Query: 167 LDKLDNAE 174
+ KLDN +
Sbjct: 108 VRKLDNTK 115
>GENEDB_PFALCIPARUM|PFE0865c [details] [associations]
symbol:PFE0865c "splicing factor, putative"
species:5833 "Plasmodium falciparum" [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 63/176 (35%), Positives = 89/176 (50%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
+++Y+G LP V RD+E + YG I +K F F+EFED RDA DA+ E +
Sbjct: 8 SRIYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKD 67
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLI- 117
G G ++ VE+ ++E GR Y A RG G R GP +R ++
Sbjct: 68 GCDFEGNKLRVEVPFN---ARENGR-----YNA----RGGGRGMMHR-GPKSRRGRYVVE 114
Query: 118 VENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA 173
V L SWQDLKD +R+ GE +AD K G V F + DM +A+DK + +
Sbjct: 115 VTGLPISGSWQDLKDHLREAGECGHADVFKD--GTGEVSFFNKDDMLEAIDKFNGS 168
>UNIPROTKB|Q8I3T5 [details] [associations]
symbol:PFE0865c "Splicing factor, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 63/176 (35%), Positives = 89/176 (50%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
+++Y+G LP V RD+E + YG I +K F F+EFED RDA DA+ E +
Sbjct: 8 SRIYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKD 67
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLI- 117
G G ++ VE+ ++E GR Y A RG G R GP +R ++
Sbjct: 68 GCDFEGNKLRVEVPFN---ARENGR-----YNA----RGGGRGMMHR-GPKSRRGRYVVE 114
Query: 118 VENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA 173
V L SWQDLKD +R+ GE +AD K G V F + DM +A+DK + +
Sbjct: 115 VTGLPISGSWQDLKDHLREAGECGHADVFKD--GTGEVSFFNKDDMLEAIDKFNGS 168
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 46/94 (48%), Positives = 58/94 (61%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
T++Y+G L R RDLE+ YGR+RDV +K + FVEF D RDADDA Y L+G+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFD 70
Query: 64 GERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRG 97
G R+TVE ++G R G R GS R PPP G
Sbjct: 71 GSRITVEASRGAPR----GSRDNGS-RGPPPGSG 99
>GENEDB_PFALCIPARUM|PF10_0217 [details] [associations]
symbol:PF10_0217 "pre-mRNA splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 216 (81.1 bits), Expect = 7.0e-17, P = 7.0e-17
Identities = 60/172 (34%), Positives = 85/172 (49%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSL 62
+Y+G LP V E ++ YGRI+ + +K + F Y D DA Y + +
Sbjct: 14 IYVGNLPGNVIEEEVYDLFGKYGRIKYIDIKPSRSSSSSYAFVHYYDLKDADYAIERRD- 72
Query: 63 LGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
G + ++ S E R +G YR +DD GPP R+++R+IV NL
Sbjct: 73 -GYKFD-GFRLRVEHSGEN--RSFGKYRK----------KDDGVGPPIRTENRVIVTNLP 118
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
WQ LKD MRQ G+V YA+ R +G+VEF S DM A++K D AE
Sbjct: 119 DNCRWQHLKDIMRQCGDVGYANIE---RGKGIVEFVSYDDMLYAIEKFDGAE 167
>UNIPROTKB|Q8IJI0 [details] [associations]
symbol:PF10_0217 "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 216 (81.1 bits), Expect = 7.0e-17, P = 7.0e-17
Identities = 60/172 (34%), Positives = 85/172 (49%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK---NGFGFVEFEDYRDADDAVYELNGKSL 62
+Y+G LP V E ++ YGRI+ + +K + F Y D DA Y + +
Sbjct: 14 IYVGNLPGNVIEEEVYDLFGKYGRIKYIDIKPSRSSSSSYAFVHYYDLKDADYAIERRD- 72
Query: 63 LGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLS 122
G + ++ S E R +G YR +DD GPP R+++R+IV NL
Sbjct: 73 -GYKFD-GFRLRVEHSGEN--RSFGKYRK----------KDDGVGPPIRTENRVIVTNLP 118
Query: 123 SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
WQ LKD MRQ G+V YA+ R +G+VEF S DM A++K D AE
Sbjct: 119 DNCRWQHLKDIMRQCGDVGYANIE---RGKGIVEFVSYDDMLYAIEKFDGAE 167
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 44/94 (46%), Positives = 58/94 (61%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
T++Y+G L R RDLE+ YGR+RDV +K + FVEF D RDADDA + L+G+
Sbjct: 11 TRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFD 70
Query: 64 GERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRG 97
G R+TVE ++G R G R + S R PPP G
Sbjct: 71 GSRITVEFSRGAPR----GSRDFDS-RGPPPGAG 99
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 62/184 (33%), Positives = 91/184 (49%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
T++Y+G LP V ++D+E+ +G + +K GF F +Y DA DA
Sbjct: 7 TRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMNGF-GFIEYEDAMDA---------- 55
Query: 64 GERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGP-PTRSDHRLIVENLS 122
R V G D ER + R P + + D P P R+ R+I+ L
Sbjct: 56 --RDIVPAFHGSDFKGERLTVQFA--RGPRRKENFPVPTDRPNLPRPRRTIFRMIISGLP 111
Query: 123 SRVSWQDLKDFMRQVG-EVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
SWQDLKDF RQ G +V Y++ R G+VEFE+++D+K A++KLD E G R+
Sbjct: 112 E-TSWQDLKDFARQSGLDVVYSETG-REPGRGIVEFETANDLKTAVEKLDGREFKGTRVT 169
Query: 182 LIED 185
+ D
Sbjct: 170 CVPD 173
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 146 (56.5 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSL-LG 64
VY+G Y R DLE+ +GR++ V +K+G+ FV FED RDA+DA+ + + G
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSGYAFVYFEDERDAEDAIRRTDNTTFGYG 63
Query: 65 ER-VTVEIAKGIDRSQERGR 83
R ++VE AK D ERG+
Sbjct: 64 RRKLSVEWAK--DFQGERGK 81
Score = 118 (46.6 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 35/101 (34%), Positives = 51/101 (50%)
Query: 12 PYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEI 71
P RERD+E+ + YG++ +V ++ F FV+F DA A+ + LL + V+VE
Sbjct: 104 PIRTRERDMERHFEPYGKVLNVRMRRNFAFVQFATQEDATKALDSTHNSKLLDKVVSVEY 163
Query: 72 AKGIDRSQERGRRGYGSYR--APPP--RRGWGHDRDDRYGP 108
A + + ER R GS R +P P RR D R P
Sbjct: 164 A--LREAGEREDRYAGSRRRRSPSPVYRRRPSPDYTRRRSP 202
Score = 63 (27.2 bits), Expect = 3.2e-15, Sum P(2) = 3.2e-15
Identities = 22/78 (28%), Positives = 32/78 (41%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSS-RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEF 157
G RD + R L V N R +D++ G+V + RN V+F
Sbjct: 80 GKPRDGKAVSNQRPTKTLFVINFDPIRTRERDMERHFEPYGKVLNV---RMRRNFAFVQF 136
Query: 158 ESSSDMKKALDKLDNAEL 175
+ D KALD N++L
Sbjct: 137 ATQEDATKALDSTHNSKL 154
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 49/103 (47%), Positives = 63/103 (61%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 151 (58.2 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGE 65
V++G Y R+ DLE+ YGR+ V +K+G+ FV FED RDA+DA+ +L+ E
Sbjct: 4 VFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYE 63
Query: 66 --RVTVEIAKGIDRSQERG 82
R++VE AKG +R + RG
Sbjct: 64 KRRLSVEWAKG-ERGRPRG 81
Score = 111 (44.1 bits), Expect = 0.00015, P = 0.00015
Identities = 32/99 (32%), Positives = 46/99 (46%)
Query: 12 PYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEI 71
P +E D+EK + YG++ +V ++ F FV+FE DA A+ +L V+VE
Sbjct: 102 PIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEY 161
Query: 72 A-KGIDRSQER-GRRGYGSYRAPPPRRGWGHDRDDRYGP 108
A K D +R G R +P RR D R P
Sbjct: 162 ALKDDDERDDRNGGRSPRRSLSPVYRRRPSPDYGRRPSP 200
Score = 56 (24.8 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 21/82 (25%), Positives = 32/82 (39%)
Query: 99 GHDRDDRYGPPT-RSDHRLIVENLSS-RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVE 156
G R D P + L V N R D++ G+V + RN V+
Sbjct: 77 GRPRGDAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNV---RIRRNFSFVQ 133
Query: 157 FESSSDMKKALDKLDNAELNGR 178
FE+ D KAL+ +++ R
Sbjct: 134 FETQEDATKALEATQRSKILDR 155
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 49/103 (47%), Positives = 62/103 (60%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G +
Sbjct: 11 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGGT 70
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYR--APPPRR 96
L G RV VE++ G RS+ RG RR YR +PPPRR
Sbjct: 71 LCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 194 (73.4 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 65/199 (32%), Positives = 91/199 (45%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRI--RDVIL-----KNGFGFVEFEDYRDADDAVYEL 57
+VY+G L Y V+ L+ F++ G + DV+L G G VE+ A +AV L
Sbjct: 112 RVYVGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPNGMSKGCGIVEYATREQAQNAVNTL 171
Query: 58 NGKSLLGERVTVEIAKGIDRSQE---RGRRGYGSYRAPPPRRGWGHDRDDRYGP-PTRSD 113
+ ++L+ V V DR E G G + P R G+G YG P
Sbjct: 172 SNQNLMNRLVYVRE----DREPEPRFSGGPSRGDFGGPG-RGGFGG-----YGGGPGGGG 221
Query: 114 HRLIVENLSSRVSWQDLKDFMRQV---GEVCYADAHK----RHRNEGVVEFESSSDMKKA 166
+L V NL V WQDLKD RQ G V AD H R + G+V FES D + A
Sbjct: 222 RQLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNA 281
Query: 167 LDKLDNAELNGRRIRLIED 185
+ + + + GR + + ED
Sbjct: 282 IQQFNGYDWQGRTLEVRED 300
Score = 135 (52.6 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 45/148 (30%), Positives = 66/148 (44%)
Query: 48 RDADDAVYELNGKSLLGERVTVEIAKGIDRSQE-RGRRGYGSYRAPPPR----RGWGHDR 102
RD DD Y + + R + A+G G G G PPPR R ++
Sbjct: 44 RDRDD--YRRSDRR---SRSPMSAAQGPSGGHSGSGYSGRGGSYPPPPRSFEDRAVAKEQ 98
Query: 103 D-DRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA----HKRHRNEGVVEF 157
++ D R+ V NLS V W LKDFMRQ G+V +AD + + G+VE+
Sbjct: 99 MMQSVRESSQQDRRVYVGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPNGMSKGCGIVEY 158
Query: 158 ESSSDMKKALDKLDNAELNGRRIRLIED 185
+ + A++ L N L R + + ED
Sbjct: 159 ATREQAQNAVNTLSNQNLMNRLVYVRED 186
>FB|FBgn0030479 [details] [associations]
symbol:Rbp1-like "Rbp1-like" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0071011 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104452 OrthoDB:EOG4CNP7N eggNOG:NOG315521
EMBL:AY113490 RefSeq:NP_572880.2 UniGene:Dm.14416 SMR:Q9VYD8
STRING:Q9VYD8 EnsemblMetazoa:FBtr0073790 GeneID:32293
KEGG:dme:Dmel_CG1987 UCSC:CG1987-RA CTD:32293 FlyBase:FBgn0030479
InParanoid:Q9VYD8 OMA:IDGAHET ChiTaRS:Rbp1-like GenomeRNAi:32293
NextBio:777789 Uniprot:Q9VYD8
Length = 158
Score = 154 (59.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 38/86 (44%), Positives = 52/86 (60%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + ++E YG +R+V + +N GF FVEFED RDA+DA L+G
Sbjct: 12 KVYVGNLGSSASKYEIENAFSKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRGLDGTR 71
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYG 87
G R+ VE++ G RS+E GR G G
Sbjct: 72 CCGTRIRVEMSSG--RSRE-GRGGGG 94
Score = 45 (20.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 81 RGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115
R G G YR+ PRR R +RSD R
Sbjct: 121 RAGDGGGRYRSRSPRRSRTRSRSFSRDRRSRSDSR 155
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 49/105 (46%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 9 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVLGLDGK 68
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R Y PP RR + D +DR
Sbjct: 69 IICGSRVRVEVSTGMPR---RSR-----YDRPPARRPF--DPNDR 103
>UNIPROTKB|J3KSR8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813 Ensembl:ENST00000584668
Uniprot:J3KSR8
Length = 143
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 37/71 (52%), Positives = 48/71 (67%)
Query: 105 RYGPPTR-SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDM 163
RYGPP+R S++R++V L SWQDLKD MR+ G+VCYAD ++ GVVEF DM
Sbjct: 6 RYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDM 63
Query: 164 KKALDKLDNAE 174
A+ KLDN +
Sbjct: 64 TYAVRKLDNTK 74
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 51/114 (44%), Positives = 64/114 (56%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 15 KVYVGNLGNSGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRT 74
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115
L G RV VE++ G RS+ RG S R R G D R PP R HR
Sbjct: 75 LCGCRVRVEMSNGEKRSRFRGPPPSWSRRPRDDYRR-GDDYRRRSSPPAR--HR 125
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 50/114 (43%), Positives = 64/114 (56%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + +LE+ YG +R V + +N GF FVEFED RDA DAV EL+G++
Sbjct: 10 KVYVGNLGNNGNKSELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDATDAVRELDGRT 69
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGH-DRDD---RYGPPTR 111
L G RV VE++ G R++ RG PPP W RDD R PP R
Sbjct: 70 LCGCRVRVELSNGEKRTRSRG---------PPP--SWNRRPRDDYRRRSSPPQR 112
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R + PP RR + D +DR
Sbjct: 71 VICGSRVRVELSTGMPR---RSR-----FDRPPARRPF--DPNDR 105
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R + PP RR + D +DR
Sbjct: 71 VICGSRVRVELSTGMPR---RSR-----FDRPPARRPF--DPNDR 105
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R + PP RR + D +DR
Sbjct: 71 VICGSRVRVELSTGMPR---RSR-----FDRPPARRPF--DPNDR 105
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R + PP RR + D +DR
Sbjct: 71 VICGSRVRVELSTGMPR---RSR-----FDRPPARRPF--DPNDR 105
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 38 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 97
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R + PP RR + D +DR
Sbjct: 98 VICGSRVRVELSTGMPR---RSR-----FDRPPARRPF--DPNDR 132
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 40 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R + PP RR + D +DR
Sbjct: 100 VICGSRVRVELSTGMPR---RSR-----FDRPPARRPF--DPNDR 134
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R + PP RR + D +DR
Sbjct: 71 VICGSRVRVELSTGMPR---RSR-----FDRPPARRPF--DPNDR 105
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+DAV L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R + PP RR + D +DR
Sbjct: 71 VICGSRVRVELSTGMPR---RSR-----FDRPPARRPF--DPNDR 105
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 47/114 (41%), Positives = 60/114 (52%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---GFGFVEFEDYRDADDAVYELNGKS 61
KVY+GGLP ++LE+ +GRIR V + GF FVE++D RDA+DAV L+G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115
+ G R VE++ G Q RG G G R G G DR G RS R
Sbjct: 64 ICGVRARVELSTG----QRRGGGGRGGGFGG--RGGGGRDRSPYRGDRGRSRSR 111
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 47/114 (41%), Positives = 60/114 (52%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---GFGFVEFEDYRDADDAVYELNGKS 61
KVY+GGLP ++LE+ +GRIR V + GF FVE++D RDA+DAV L+G
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115
+ G R VE++ G Q RG G G R G G DR G RS R
Sbjct: 64 ICGVRARVELSTG----QRRGGGGRGGGFGG--RGGGGRDRSPYRGDRGRSRSR 111
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 48/105 (45%), Positives = 63/105 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA+D+V L+GK
Sbjct: 11 TKVYVGNLGTGAGKGELERAFGYYGPLRSVWIARNPAGFAFVEFEDPRDAEDSVRGLDGK 70
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R Y PP RR + D +DR
Sbjct: 71 VICGSRVRVELSTGMPR---RSR-----YDHPPSRRPF--DPNDR 105
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 38/82 (46%), Positives = 52/82 (63%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L G + +LE+ YG +R V + +N GF FVE+ED RDA+DAV ++GK
Sbjct: 15 KVYVGDLGNGAAKGELERAFSYYGPLRSVWVARNPPGFAFVEYEDARDAEDAVKGMDGKV 74
Query: 62 LLGERVTVEIAKGIDRSQERGR 83
L G RV VE++ G+ R GR
Sbjct: 75 LCGARVRVELSNGMSRKSRYGR 96
>UNIPROTKB|F1M8R2 [details] [associations]
symbol:F1M8R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00564263 Ensembl:ENSRNOT00000047994
Uniprot:F1M8R2
Length = 212
Score = 148 (57.2 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
+K Y+G L GV + +LE+ YG +R V I +N GF FV FED RDA+DAV L GK
Sbjct: 6 SKGYVGNLGTGVGKGELERAFSYYGPLRTVWIARNPPGFAFV-FEDPRDAEDAVGGLGGK 64
Query: 61 SLLGERVTVEIAKGIDR 77
+ G RV VE++ G+ R
Sbjct: 65 VICGSRVRVELSTGMPR 81
Score = 38 (18.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 14/47 (29%), Positives = 16/47 (34%)
Query: 68 TVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDD-RYGPPTRSD 113
+V I ER R R+P PRR R P R D
Sbjct: 166 SVSIIGSRSHKVERPRSCQSKSRSPSPRRSHSPSGSPHRSASPERMD 212
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 41/101 (40%), Positives = 55/101 (54%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L + ++E YG +R+V + +N GF FVEFED RDA+DA L+G
Sbjct: 12 KVYVGNLGSSASKHEIEGAFAKYGPLRNVWVARNPPGFAFVEFEDRRDAEDATRALDGTR 71
Query: 62 LLGERVTVEIAKGIDRSQERG------RRGYGSYRAPPPRR 96
G R+ VE++ G R + RG R G G YR P R
Sbjct: 72 CCGTRIRVEMSSGRSRDRRRGEGGSSGRSGSGRYRITPSAR 112
>SGD|S000002840 [details] [associations]
symbol:NPL3 "RNA-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006406 "mRNA export from nucleus" evidence=IGI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA;IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006415 "translational termination" evidence=IGI;IMP]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:2000805 "negative regulation of termination of
RNA polymerase II transcription, poly(A)-coupled" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0031370 "eukaryotic initiation
factor 4G binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000002840 EMBL:U33007 GO:GO:0005634 GO:GO:0005737
GO:GO:0005730 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006938 GO:GO:0030529 GO:GO:0006406 GO:GO:0000398
GO:GO:0006364 GO:GO:0032968 eggNOG:COG0724 GO:GO:0008143
EMBL:X70951 GO:GO:0006415 GeneTree:ENSGT00570000079107
GO:GO:0031370 RefSeq:NP_010725.3 GeneID:852047 KEGG:sce:YDR437W
KO:K03861 EMBL:X66019 EMBL:M86731 PIR:JN0866 RefSeq:NP_010720.3
PDB:2JVO PDB:2JVR PDB:2OSQ PDB:2OSR PDBsum:2JVO PDBsum:2JVR
PDBsum:2OSQ PDBsum:2OSR ProteinModelPortal:Q01560 SMR:Q01560
DIP:DIP-6464N IntAct:Q01560 MINT:MINT-600838 STRING:Q01560
PaxDb:Q01560 PeptideAtlas:Q01560 EnsemblFungi:YDR432W GeneID:852042
KEGG:sce:YDR432W CYGD:YDR432w OMA:ANQPLEV OrthoDB:EOG4BP4N7
EvolutionaryTrace:Q01560 NextBio:970290 Genevestigator:Q01560
GermOnline:YDR432W GO:GO:2000805 Uniprot:Q01560
Length = 414
Score = 117 (46.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
T++++ P V+E +L + +G +++V + NGF FVEFE+ A A+ E++GKS
Sbjct: 125 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNGFAFVEFEEAESAAKAIEEVHGKSFA 184
Query: 64 GERVTVEIAK 73
+ + V +K
Sbjct: 185 NQPLEVVYSK 194
Score = 106 (42.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 25/74 (33%), Positives = 41/74 (55%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQVG-EVCYADAHKRHRN-EGVVEFESSSDMKKALDKLD 171
+R+ ++NL SWQDLKD R+ E ++ + R + G +EF S + +AL++L+
Sbjct: 200 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLN 259
Query: 172 NAELNGRRIRLIED 185
N E G I + D
Sbjct: 260 NIEFRGSVITVERD 273
Score = 60 (26.2 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 83 RRGYGSYRAPPPRRGWGHDRDDRYGPPTRS 112
R GY S R R G+G R+D YGPP S
Sbjct: 351 RGGYDSPRGGYSRGGYGGPRND-YGPPRGS 379
Score = 46 (21.3 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 83 RRGYGSYRAP--PPRRGWGHDRDDRYGPPTRSDH 114
R GYG R PPR +G R GP R D+
Sbjct: 363 RGGYGGPRNDYGPPRGSYGGSRGGYDGP--RGDY 394
>TAIR|locus:2173088 [details] [associations]
symbol:RS41 "arginine/serine-rich splicing factor 41"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GO:GO:0000398 KO:K12893 IPI:IPI00527125
RefSeq:NP_200017.2 UniGene:At.22278 ProteinModelPortal:F4KES0
SMR:F4KES0 PRIDE:F4KES0 EnsemblPlants:AT5G52040.2 GeneID:835279
KEGG:ath:AT5G52040 OMA:PYEKRRE Uniprot:F4KES0
Length = 357
Score = 141 (54.7 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 38/90 (42%), Positives = 51/90 (56%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELN----GKS 61
V+ G Y RE DLE+ + YG++ V +K GF FV ED RDA+DA+ L+ G++
Sbjct: 4 VFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEYGRT 63
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYGSYRA 91
G R+ VE K DR GR G GS R+
Sbjct: 64 --GRRLRVEWTKN-DRGGA-GRSG-GSRRS 88
Score = 116 (45.9 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 34/98 (34%), Positives = 50/98 (51%)
Query: 16 RERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGI 75
R RDLE+ + YG+I +V ++ F F+++E DA A+ N L+ + ++VE A
Sbjct: 109 RTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKD 168
Query: 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSD 113
D S RG GY +P RR DR R P R +
Sbjct: 169 DDS--RGN-GY----SPERRRDRSPDRRRRSPSPYRRE 199
Score = 48 (22.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 83 RRGYGSYRAPPPRRGWGHDRDDRYGPP 109
R+G G R+PPP + R+ R PP
Sbjct: 266 RKGRGESRSPPP---YEKRRESRSPPP 289
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 163 (62.4 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 40/107 (37%), Positives = 58/107 (54%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD 103
+NGKS+ G ++ V+ A G G RGYG R G+G RD
Sbjct: 67 MNGKSVDGRQIRVDQAGG-------GDRGYGGNRFESRSGGYGGSRD 106
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 43/87 (49%), Positives = 55/87 (63%)
Query: 3 GTKVYIGGLPYGVRERDLE-KFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELN 58
GT+VY+G L V++ DLE +F K YG++ V I N GF FVEFE DA+ A LN
Sbjct: 6 GTRVYVGNLTDKVKKDDLEGEFTK-YGKLNSVWIAFNPPGFAFVEFEHRDDAEKACDILN 64
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRG 85
G LLG ++ VEI+KG R +GRRG
Sbjct: 65 GSELLGSQLRVEISKGRPR---QGRRG 88
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 165 (63.1 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 52/126 (41%), Positives = 63/126 (50%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPR-----RGWGHDRDDR---YGP 108
+NGKSL G+ + VE A S ERGR G PPPR RG+G R GP
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFERGRHG----PPPPPRSRGPPRGFGAGRGGSGGTRGP 122
Query: 109 PTRSDH 114
P+R H
Sbjct: 123 PSRGGH 128
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 166 (63.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 57/189 (30%), Positives = 84/189 (44%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIR--DVI-LKNGFG----FVEFEDYRDADDAVYEL 57
+VY+G L Y VR +L++F+ G + +++ L NG +E+ +A A+ L
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 58 NGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLI 117
+ + +G V + DR Q R +GS P G D + P D +L
Sbjct: 138 SNQKFMGRLVYIRE----DREQN-AR--FGSSSVSPSASSNGKDSE-----P---DRQLF 182
Query: 118 VENLSSRVSWQDLKDFMRQVGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNA 173
V NL V WQDLKD RQ G V AD R R G+V S + A+ L N
Sbjct: 183 VGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQMLHNT 242
Query: 174 ELNGRRIRL 182
+ GR + +
Sbjct: 243 DFMGRTLEV 251
Score = 111 (44.1 bits), Expect = 0.00041, P = 0.00041
Identities = 34/112 (30%), Positives = 56/112 (50%)
Query: 78 SQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQV 137
S +RG G + P G G +Y T+ + R+ V NLS +V W +LK+FM QV
Sbjct: 48 SLKRGLHFDGEHTERDPHLGNGQ----KY---TQQERRVYVGNLSYQVRWFELKEFMGQV 100
Query: 138 GEV--CYADAHKRHRNEG--VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
G V C ++G ++E+ ++ + + A+ L N + GR + + ED
Sbjct: 101 GNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLSNQKFMGRLVYIRED 152
Score = 78 (32.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYAD-AHK---RHRNEGVVEFESSSDMKKALDKLD 171
+ V NL S ++L D +G V A A++ R + GVV+FE+ +D +++KL+
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
Query: 172 NAELNGRRIRL 182
GR ++L
Sbjct: 372 GYRYGGRPLQL 382
Score = 75 (31.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 25/92 (27%), Positives = 43/92 (46%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGR-IRDVILKN------GFGFVEFEDYRDADDAVYEL 57
++++G LPY VR +DL+ + G IR I N G G V ++A A+ L
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQML 239
Query: 58 NGKSLLGERVTVEIAKGIDRSQERGRRGYGSY 89
+ +G T+E+ +DR + Y ++
Sbjct: 240 HNTDFMGR--TLEVR--LDRFAHHKSKPYSTH 267
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 45/126 (35%), Positives = 66/126 (52%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+ +GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YGPP 109
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRGRGRGFSRGGGDRGYGG- 125
Query: 110 TRSDHR 115
+R D R
Sbjct: 126 SRFDSR 131
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 45/126 (35%), Positives = 66/126 (52%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+ +GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YGPP 109
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRGRGRGFSRGGGDRGYGG- 125
Query: 110 TRSDHR 115
+R D R
Sbjct: 126 SRFDSR 131
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 45/126 (35%), Positives = 66/126 (52%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+ +GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YGPP 109
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRGRGRGFSRGGGDRGYGG- 125
Query: 110 TRSDHR 115
+R D R
Sbjct: 126 SRFDSR 131
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 33/60 (55%), Positives = 41/60 (68%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--G---FGFVEFEDYRDADDAVYELNG 59
++Y+G LP VRE+DLE YGRIR++ LKN G F FV FED RDA+DA+Y NG
Sbjct: 3 RIYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 62
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 105 RYGPPTRSDHRLIVEN-LSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDM 163
R+ P ++ + N L SWQDLKD MR+ G+VCYAD K G+VE+ DM
Sbjct: 46 RFEDPRDAEDAIYGRNGLPPSGSWQDLKDHMREAGDVCYADVQKD--GVGMVEYLRKEDM 103
Query: 164 KKALDKL 170
+ AL KL
Sbjct: 104 EYALRKL 110
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSSGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 159 (61.0 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 51/125 (40%), Positives = 61/125 (48%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPR-----RG--WGHDRDDRYGPP 109
+NGKSL G+ + VE A S E GRRG PPPR RG G GPP
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRG----PPPPPRSRGPPRGLRGGRGSGGTRGPP 122
Query: 110 TRSDH 114
+R H
Sbjct: 123 SRGGH 127
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 158 (60.7 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 51/123 (41%), Positives = 61/123 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 11 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 70
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+R
Sbjct: 71 MNGKSLDGKAIKVEQAT--KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR-GPPSR 127
Query: 112 SDH 114
H
Sbjct: 128 GGH 130
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 158 (60.7 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 51/123 (41%), Positives = 61/123 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+R
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR-GPPSR 125
Query: 112 SDH 114
H
Sbjct: 126 GGH 128
>UNIPROTKB|F1LZA3 [details] [associations]
symbol:F1LZA3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
Length = 262
Score = 156 (60.0 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 49/122 (40%), Positives = 64/122 (52%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ + YG +R V I +N GF FVEFED RDA+D V L+GK
Sbjct: 14 TKVYVGNLGTGAGKGELERALSYYGSLRTVWIARNPPGFAFVEFEDPRDAEDLVRGLDGK 73
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGW-----GHDRDD--RYGPPTRSD 113
+ G V VE++ + R + R R P R + GH D RY P RS
Sbjct: 74 VICGSGVRVELSTVMPR-RSRFDRPPAHRPFNPNDRCYECGEKGHYAYDCHRYSPQRRSR 132
Query: 114 HR 115
R
Sbjct: 133 SR 134
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRGRGFSRGGGDRGYG 124
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRGRGFSRGGGDRGYG 124
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRSRGRGFSRGGGDRGYG 124
>ZFIN|ZDB-GENE-030131-6898 [details] [associations]
symbol:hnrnpm "heterogeneous nuclear
ribonucleoprotein M" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024667
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6898 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GeneTree:ENSGT00410000025635
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:BX649327
IPI:IPI01024026 Ensembl:ENSDART00000137689 ArrayExpress:F1R2E0
Bgee:F1R2E0 Uniprot:F1R2E0
Length = 715
Score = 165 (63.1 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 40/109 (36%), Positives = 61/109 (55%)
Query: 82 GRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEV 140
G+ + S + PP+RG G R + Y P + + + V N+ V WQ LKD M++ VGEV
Sbjct: 18 GKSNHESRKERPPKRGGG-GRFEPYSNPNKR-YSVFVSNIPYDVKWQTLKDLMKEKVGEV 75
Query: 141 CYA----DAHKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
Y D + R VVEF + MKKA++K++ +NGR +++ ED
Sbjct: 76 TYVEHLMDGEGKSRGCAVVEFRTEELMKKAVEKVNKHVMNGRPLKVKED 124
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 155 (59.6 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 40/87 (45%), Positives = 50/87 (57%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGKS 61
KVY+G L R+ DLE YG +R V I +N GF FVEFE RDA DAV L+G++
Sbjct: 9 KVYVGDLGNNARKNDLEYVFGAYGSLRSVWIARNPPGFAFVEFESARDAADAVRGLDGRT 68
Query: 62 LLGERVTVEIAKG-IDRSQERGRRGYG 87
+ G R VE++ G RS G G G
Sbjct: 69 VCGRRARVELSTGKYARSGGGGGGGGG 95
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 160 (61.4 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 51/123 (41%), Positives = 61/123 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+R
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRGLPPPPRSRGPPRGLRGGRGGSGGTR-GPPSR 125
Query: 112 SDH 114
H
Sbjct: 126 GGH 128
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 160 (61.4 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 51/123 (41%), Positives = 61/123 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+R
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRGLPPPPRSRGPPRGLRGGRGGSGGTR-GPPSR 125
Query: 112 SDH 114
H
Sbjct: 126 GGH 128
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 159 (61.0 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 51/125 (40%), Positives = 61/125 (48%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPR-----RG--WGHDRDDRYGPP 109
+NGKSL G+ + VE A S E GRRG PPPR RG G GPP
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRG----PPPPPRSRGPPRGLRGGRGSGGTRGPP 122
Query: 110 TRSDH 114
+R H
Sbjct: 123 SRGGH 127
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 158 (60.7 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 51/123 (41%), Positives = 61/123 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+R
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR-GPPSR 125
Query: 112 SDH 114
H
Sbjct: 126 GGH 128
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 158 (60.7 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 51/123 (41%), Positives = 61/123 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+R
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR-GPPSR 125
Query: 112 SDH 114
H
Sbjct: 126 GGH 128
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 158 (60.7 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 51/123 (41%), Positives = 61/123 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+R
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR-GPPSR 125
Query: 112 SDH 114
H
Sbjct: 126 GGH 128
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 158 (60.7 bits), Expect = 7.1e-11, P = 7.1e-11
Identities = 51/123 (41%), Positives = 61/123 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 10 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 69
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+R
Sbjct: 70 MNGKSLDGKAIKVEQAT--KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR-GPPSR 126
Query: 112 SDH 114
H
Sbjct: 127 GGH 129
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 155 (59.6 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG-----YGSYRAPPPR-RGWGHDRDDR-YG 107
+NGKS+ G ++ V+ A ++ RG RG G +R R RG+ DR YG
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYG 124
>UNIPROTKB|E1BVX5 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
IPI:IPI00821462 ProteinModelPortal:E1BVX5
Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
Length = 235
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 43/105 (40%), Positives = 57/105 (54%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNGK 60
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA + +
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAKPLLKSSKSR 70
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
+ G RV VE++ G+ R R R Y PP RR + D +DR
Sbjct: 71 VICGSRVRVEVSTGMPR---RSR-----YDRPPARRPF--DPNDR 105
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 156 (60.0 bits), Expect = 8.1e-11, P = 8.1e-11
Identities = 41/123 (33%), Positives = 61/123 (49%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG-------FGFVEFEDYRDADDAVY 55
G VY+GGLPY + E + + YG + V + N +GFV F + R ADDA+
Sbjct: 6 GNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIE 65
Query: 56 ELNGKSLLGERVTVE--IAKGIDRSQERGR-RGYGSYRAPPPRRGWGHDRDDRYGPPTRS 112
+++GKS+ G V V +G + GR + +G + P RR G+ DRY +R
Sbjct: 66 DMDGKSIGGRAVRVNDVTTRGGRMNPGPGRLQPHGGWDRSPDRRSDGNYERDRYSDRSRE 125
Query: 113 DHR 115
R
Sbjct: 126 RDR 128
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS 88
+NGKS+ G ++ V+ A ++ RG RG GS
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRG-GS 97
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS 88
+NGKS+ G ++ V+ A ++ RG RG GS
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSDNRSRGYRG-GS 97
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 45/120 (37%), Positives = 62/120 (51%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL + E LE+ YGRI +V++ GFGFV FE+ DA DA+
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR-YGPPTRSDHR 115
+NGKS+ G ++ V+ A + G RG S R G G DR YG +R D+R
Sbjct: 66 MNGKSVDGRQIRVDQAGKSSGERRGGYRGGSSGGRGFFRGGRGRGGGDRGYGS-SRFDNR 124
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 41/121 (33%), Positives = 62/121 (51%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E LE+ YG++ +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPR--RGWGHDRDDRYGPPTRSDH 114
+NGKS+ G ++ V+ A + G RG S R RG G D YG +R ++
Sbjct: 67 MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRGFFRGGRGRGGGGDRGYGGSSRFEN 126
Query: 115 R 115
R
Sbjct: 127 R 127
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 43/120 (35%), Positives = 62/120 (51%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL + E LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR-YGPPTRSDHR 115
+NGK++ G ++ V+ A + G RG S R G G DR YG +R D+R
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSGDRRGGYRGGSSGGRGFFRGGRGRGGGDRGYGS-SRFDNR 124
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 46/116 (39%), Positives = 57/116 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIR--DVIL------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL Y E+ LE+ YG I DVI GFGFV FE+ DA DA+
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 57 LNGKSLLGERVTV-EIAKGIDRSQ--ERGRRGYGS--YRAPPPRRGWGHDRDDRYG 107
+NGK + G + V E K RS G RG G +R R G G+ D YG
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRSGGFRGGSRGGGRGFFRGSRGRGGGGYGGDRSYG 139
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 49/125 (39%), Positives = 60/125 (48%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPR-RG------WGHDRDDRYGPP 109
+NGKSL G+ + VE A + GRRG PPPR RG G GPP
Sbjct: 69 MNGKSLDGKAIKVEQATK-PSFESGGRRG----PPPPPRSRGPPRGLRGGRGGSGARGPP 123
Query: 110 TRSDH 114
+R H
Sbjct: 124 SRGSH 128
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 154 (59.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 49/124 (39%), Positives = 61/124 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +++L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR------YGPPT 110
+NGKSL G+ + VE A S E GRRG PPP R G R R GPP+
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRG-----PPPPPRSRGPPRGLRGGSGGTRGPPS 121
Query: 111 RSDH 114
R +
Sbjct: 122 RGGY 125
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 153 (58.9 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 50/123 (40%), Positives = 60/123 (48%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS---YRAPPP--RRGWGHDRDDRYGPPTR 111
+NGKSL G+ + VE A S E GRRG R PP R G G R GPP+
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRGPPPPPRSRGPPRGLRGGRGGSGGTR-GPPSH 125
Query: 112 SDH 114
H
Sbjct: 126 GGH 128
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 127 (49.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 29/80 (36%), Positives = 48/80 (60%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---GFGFVEFEDYRDADDAVYELNGKS 61
+VY+G L V R++E + +G +R V + GF F++F+D RDA+DA+ +L+GK+
Sbjct: 3 RVYVGNLDPRVTAREIEDEFRVFGVLRSVWVARKPPGFAFIDFDDRRDAEDAIRDLDGKN 62
Query: 62 LLGERVTVEIAKGIDRSQER 81
G RV + G R ++R
Sbjct: 63 --GWRVELSTKAGSGRGRDR 80
Score = 49 (22.3 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 76 DRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTR 111
DRS +R R Y R+PPP R + R PP R
Sbjct: 149 DRSPKR--RSYS--RSPPPARARSYSRSP---PPPR 177
Score = 36 (17.7 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 73 KGIDRSQERGR-RGYGSYRAPPPRRGWGHDRDDRYGPPTRSD 113
+ RS R R Y R+PPP R + R P R +
Sbjct: 155 RSYSRSPPPARARSYS--RSPPPPRERSYSRSPAQ-PANREE 193
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 124 (48.7 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---GFGFVEFEDYRDADDAVYELNGK 60
T+VY+G L V ER+LE K +G +R+V + G+ F+EF+D RDA DA+ L+ K
Sbjct: 2 TRVYVGNLDPRVTERELEDEFKAFGVLRNVWVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 61 SLLGERVTVEIAKGIDRSQERGRRG 85
+ G RV + R GRRG
Sbjct: 62 N--GWRVELSHKDKGGRGGGGGRRG 84
Score = 50 (22.7 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 15/36 (41%), Positives = 17/36 (47%)
Query: 81 RGRRGYGSYRA-PPPRRGWGHDRDDRYGPPTRSDHR 115
RGRR R+ PPRRG + R PP R R
Sbjct: 136 RGRRSPPRRRSVTPPRRGRSYSRS----PPYRGSRR 167
Score = 46 (21.3 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 16/35 (45%), Positives = 16/35 (45%)
Query: 77 RSQERGRRGYGSYRAPPPRRGWGHD----RDDRYG 107
RS RRG SY PP RG D RD YG
Sbjct: 145 RSVTPPRRGR-SYSRSPPYRGSRRDSPRRRDSPYG 178
Score = 43 (20.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 83 RRGYGSYR--APPPRRGWGHDRDDRYGPPTRS 112
RRG GS R +P PRR R YG RS
Sbjct: 105 RRGRGSVRRRSPSPRRR----RSPDYGYARRS 132
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 41/120 (34%), Positives = 62/120 (51%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE YG+I++V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR-YGPPTRSDHR 115
+NGK++ G ++ V+ A + G RG S RG G R YG +R D+R
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRRGGYRGGSSGGGRGFFRG-GRGRGGGGYGGSSRFDNR 125
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 150 (57.9 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 48/124 (38%), Positives = 60/124 (48%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +++L GF FV FE DA D +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR------YGPPT 110
+NGKSL G+ + VE A S E GRRG PPP R G R R GPP+
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRG-----PPPPPRSRGPPRGLRGGSGGTRGPPS 121
Query: 111 RSDH 114
R +
Sbjct: 122 RGGY 125
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 150 (57.9 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 48/124 (38%), Positives = 60/124 (48%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +++L GF FV FE DA D +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR------YGPPT 110
+NGKSL G+ + VE A S E GRRG PPP R G R R GPP+
Sbjct: 69 MNGKSLDGKAIKVEQAT--KPSFESGRRG-----PPPPPRSRGPPRGLRGGSGGTRGPPS 121
Query: 111 RSDH 114
R +
Sbjct: 122 RGGY 125
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 149 (57.5 bits), Expect = 6.4e-10, P = 6.4e-10
Identities = 47/131 (35%), Positives = 65/131 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE + +GRI +V+L GF FV +E+ DA DA E
Sbjct: 9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDR---DDRYGPPTRSD 113
+NGK L G+ + VE A + + GRRG R+ P RG R GPP+R
Sbjct: 69 MNGKPLDGKPIKVEQATK-PQFETSGRRGPPPPRSRGPSRGLRGSRGGPSGMRGPPSREP 127
Query: 114 HRLIVENLSSR 124
+ +SSR
Sbjct: 128 ---FFKGMSSR 135
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 145 (56.1 bits), Expect = 8.8e-10, P = 8.8e-10
Identities = 53/193 (27%), Positives = 86/193 (44%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIR--DVIL------KNGFGFVEFEDYRDADDAVYE 56
K+++G LP+ V L + + G + +VI GFGFV + + A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRL 116
NG L G + V + ++ RG R+ G G+ G S +R+
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGP---RSSFGSSGSGYGGGG--GSGAGSGNRV 206
Query: 117 IVENLSSRVSWQDLKDFMRQVGEVCYA----DAHK-RHRNEGVVEFESSSDMKKALDKLD 171
V NLS V L+ + G+V A D R + G V ++SS +++ A+ LD
Sbjct: 207 YVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLD 266
Query: 172 NAELNGRRIRLIE 184
A+L+GR+IR+ E
Sbjct: 267 GADLDGRQIRVSE 279
>TAIR|locus:2160437 [details] [associations]
symbol:AT5G41690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AK221749
IPI:IPI00517520 RefSeq:NP_568594.3 UniGene:At.55306
ProteinModelPortal:Q56XC6 SMR:Q56XC6 EnsemblPlants:AT5G41690.1
GeneID:834172 KEGG:ath:AT5G41690 TAIR:At5g41690
HOGENOM:HOG000131709 InParanoid:Q56XC6 OMA:WHERESL PhylomeDB:Q56XC6
ProtClustDB:CLSN2679886 Genevestigator:Q56XC6 Uniprot:Q56XC6
Length = 567
Score = 149 (57.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYG---RIRDVI-LKN---GFGFVEFEDYRDADDAVYELN 58
+++ LPY + ++ F K G R++ ++ LK G GFVEF +A++A+ + N
Sbjct: 70 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 129
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRA--PPPRRGWGHDRDDRYGPPTRSDHRL 116
G+ L ++ +++A ++ + ++ RR H ++ PP + L
Sbjct: 130 GECLDNNKIFLDVAN--KKATYLPPKYCIDHKVWDKDYRRLESHPIEEDERPPNSVEEVL 187
Query: 117 IVENLSSRVSWQDLKDFMRQVGEVCYADA---HK-RHRNEGVVEFESSSDMKKALDKLDN 172
V NLS + D+ DF VGEV H+ +H G VEF S+ + KKAL+ +
Sbjct: 188 FVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADETKKALENKNG 247
Query: 173 AELNGRRI 180
L+ +I
Sbjct: 248 EYLHDHKI 255
Score = 90 (36.7 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 26/71 (36%), Positives = 33/71 (46%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE----GVVEFESSSDMKKALDKLD 171
L V NLS R + F + V EV HR E G VEF S ++ +KAL K++
Sbjct: 438 LFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKALQKMN 497
Query: 172 NAELNGRRIRL 182
L R I L
Sbjct: 498 GENLRSREIFL 508
Score = 63 (27.2 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 38 GFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAK 73
G+GFVEF + A+ NG+ L ++ +++AK
Sbjct: 226 GYGFVEFASADETKKALENKNGEYLHDHKIFIDVAK 261
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 42/104 (40%), Positives = 54/104 (51%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN-------GFGFVEFEDYRDADDAVYE 56
K++IGGL + E+ LE YG I +V + +N GFGFV FE+ DA DA+
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 57 LNGKSLLGERVTV-EIAKGIDRSQERGRRGYGSYRAPPPRRGWG 99
+NGKS+ G + V E KG R G GSYR RG G
Sbjct: 66 MNGKSVDGRTIRVDEAGKGGGGGGGRSGGG-GSYRGGGGGRGGG 108
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 139 (54.0 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 33/106 (31%), Positives = 59/106 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 92 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 150
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D +SQ G+ G +GS P GW
Sbjct: 151 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGW 196
>ZFIN|ZDB-GENE-040912-155 [details] [associations]
symbol:ncoa5 "nuclear receptor coactivator 5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR004154 ZFIN:ZDB-GENE-040912-155 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 SUPFAM:SSF52954 Gene3D:3.40.50.800
GeneTree:ENSGT00530000064134 EMBL:CR847793 EMBL:CABZ01015279
IPI:IPI00864633 Ensembl:ENSDART00000124774 ArrayExpress:F1QRD4
Bgee:F1QRD4 Uniprot:F1QRD4
Length = 622
Score = 148 (57.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 39/115 (33%), Positives = 62/115 (53%)
Query: 5 KVYIGGLPYG-VRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
++++G LP + ++D+E + YG+I+ + L G+GFV+FE DA+ A NG+
Sbjct: 28 RIFVGNLPTAHMAKKDMEDLFRPYGKIQALSLFRGYGFVQFERLEDAEAAKAGHNGRVYR 87
Query: 64 GERVTVEIAKGIDRSQERG---RR---GYGSYRAPPPR-RGWGHDRDDRYGPPTR 111
G ++ V +A +++ R RR YG R P PR R H RD RY +R
Sbjct: 88 GYKLDVNMAAERRQNKSRSSPPRRPSSSYGESREPRPRSRSPVHARDSRYHRESR 142
>UNIPROTKB|E1BRL9 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 EMBL:AADN02041253 EMBL:AADN02041254
EMBL:AADN02041255 EMBL:AADN02041256 IPI:IPI00593697
ProteinModelPortal:E1BRL9 Ensembl:ENSGALT00000022437
ArrayExpress:E1BRL9 Uniprot:E1BRL9
Length = 226
Score = 138 (53.6 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 44/106 (41%), Positives = 56/106 (52%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKN--GFGFVEFEDYRDADDAVYELNG- 59
TKVY+G L G + +LE+ YG +R V I +N GF FVEFED RDA
Sbjct: 11 TKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAXXXXASKPLL 70
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR 105
K + G RV VE++ G+ R R R Y PP RR + D +DR
Sbjct: 71 KVICGSRVRVEVSTGMPR---RSR-----YDRPPARRPF--DPNDR 106
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 105 (42.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA----DAHK-RHRNEGVVEFESSSDMKKA 166
++H+L V NLS V+ + L R+ G+V A D R R G V + S ++M+ A
Sbjct: 175 TEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETA 234
Query: 167 LDKLDNAELNGRRIRL 182
L+ LD EL GR IR+
Sbjct: 235 LESLDGFELEGRAIRV 250
Score = 85 (35.0 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 23/79 (29%), Positives = 33/79 (41%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI--------RDVILKNGFGFVEFEDYRDADDA 53
V TK+Y G LPY V L + ++ + RD GF FV + D +
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 54 VYELNGKSLLGERVTVEIA 72
+ L+G LG + V A
Sbjct: 143 IDNLDGTEYLGRALKVNFA 161
>WB|WBGene00004701 [details] [associations]
symbol:rsp-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0003723 GO:GO:0042127 GO:GO:0000398
GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 46/123 (37%), Positives = 58/123 (47%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + I L Y DL + + YG I DV + GFGFV F + RDA+ A+
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 56 ELNGKSLLGERVTVEIAKGIDR-SQERGRRGYGS--YRAPPPRRGWGHDRDDRYGPPTRS 112
+GK + G + V +AK DR S ERG RG G R+ PRR R R P RS
Sbjct: 79 RTDGKLVDGRELRVTLAK-YDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRS 137
Query: 113 DHR 115
R
Sbjct: 138 RSR 140
>UNIPROTKB|Q09511 [details] [associations]
symbol:rsp-4 "Probable splicing factor,
arginine/serine-rich 4" species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002009 GO:GO:0040010 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010171 GO:GO:0040011 GO:GO:0003723 GO:GO:0042127
GO:GO:0000398 GO:GO:0040020 EMBL:FO081042 GO:GO:0001703 PIR:T15917
RefSeq:NP_495013.1 RefSeq:NP_495014.1 UniGene:Cel.5535
ProteinModelPortal:Q09511 SMR:Q09511 DIP:DIP-26638N
MINT:MINT-1120954 STRING:Q09511 PaxDb:Q09511 PRIDE:Q09511
EnsemblMetazoa:EEED8.7a GeneID:173915 KEGG:cel:CELE_EEED8.7
UCSC:EEED8.7a CTD:173915 WormBase:EEED8.7a WormBase:EEED8.7b
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233
InParanoid:Q09511 KO:K12891 OMA:YDATEYD NextBio:881647
Uniprot:Q09511
Length = 196
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 46/123 (37%), Positives = 58/123 (47%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + I L Y DL + + YG I DV + GFGFV F + RDA+ A+
Sbjct: 19 TSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEHALD 78
Query: 56 ELNGKSLLGERVTVEIAKGIDR-SQERGRRGYGS--YRAPPPRRGWGHDRDDRYGPPTRS 112
+GK + G + V +AK DR S ERG RG G R+ PRR R R P RS
Sbjct: 79 RTDGKLVDGRELRVTLAK-YDRPSDERGGRGGGGGRRRSRSPRRRSRSPRYSRSRSPRRS 137
Query: 113 DHR 115
R
Sbjct: 138 RSR 140
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 143 (55.4 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 47/125 (37%), Positives = 57/125 (45%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGR+ +V+L GF FV FE DA DA E
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 57 LNGKSLLGERVTVEIAK--GIDRSQERGRRGYGSYRAPPP----RRGWGHDRDD---RYG 107
LNGK+L G+ + VE A RG R PP RG G R + G
Sbjct: 69 LNGKALDGKPIKVEQATKPSFSTPSRRGPPTSPRSRGPPRGLRGSRGGGSSRGQMPLKRG 128
Query: 108 PPTRS 112
PP RS
Sbjct: 129 PPPRS 133
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 139 (54.0 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 33/106 (31%), Positives = 59/106 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 141 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 199
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D +SQ G+ G +GS P GW
Sbjct: 200 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGW 245
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 45/118 (38%), Positives = 57/118 (48%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF FV FE DA DA +
Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARD 68
Query: 57 LNGKSLLGERVTVEIA-KGIDRSQERGRRGYG-SYRAPPPRRGWGHDRDDR-YGPPTR 111
+NGKSL G+ + VE A K + R G S + R + RD R Y PP R
Sbjct: 69 MNGKSLDGKAIKVEQATKPSFENVYLSPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPR 126
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 142 (55.0 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 47/125 (37%), Positives = 57/125 (45%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGR+ +V+L GF FV FE DA DA E
Sbjct: 9 KLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAARE 68
Query: 57 LNGKSLLGERVTVEIAK--GIDRSQERGRRGYGSYRAPPP----RRGWGHDRDD---RYG 107
LNGK+L G+ + VE A RG R PP RG G R + G
Sbjct: 69 LNGKALDGKPIKVEQATKPSFSAPSRRGPPPPPRSRGPPRGLRGSRGGGSSRGQMPLKRG 128
Query: 108 PPTRS 112
PP RS
Sbjct: 129 PPPRS 133
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 29/56 (51%), Positives = 38/56 (67%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---G--FGFVEFEDYRDADDAVY 55
++Y+G LP +R +D+E YG IRD+ LKN G F FVEFED RDA+DAV+
Sbjct: 17 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVH 72
>TAIR|locus:2131864 [details] [associations]
symbol:RS40 "arginine/serine-rich splicing factor 40"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
Length = 350
Score = 141 (54.7 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 36/93 (38%), Positives = 50/93 (53%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSL--L 63
V+ G Y RE DLE+ + YG++ V +K GF FV ED RDA+DA+ L+
Sbjct: 4 VFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAFVYMEDERDAEDAIRALDRFEFGRK 63
Query: 64 GERVTVEIAKGIDRSQERGRRGYGSYRAPPPRR 96
G R+ VE K +R ++ R G GS R+ R
Sbjct: 64 GRRLRVEWTKS-ERGGDK-RSGGGSRRSSSSMR 94
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVE 70
+NGKS+ G ++ V+
Sbjct: 67 MNGKSVDGRQIRVD 80
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 145 (56.1 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 56 GGNRFEPYANPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 114
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 115 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 146
Score = 98 (39.6 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 39/136 (28%), Positives = 61/136 (44%)
Query: 58 NGKSLLGERVTVEIAKGIDR-SQERGRRGYGSY-RAPPPRRG-WGHDRDDRYG-----PP 109
N +G + + GI+R G G S+ RA RG +G +G P
Sbjct: 547 NSLERMGPAMGPALGAGIERMGLAMGGAGGASFDRAIEMERGNFGGSFAGSFGGAGGHAP 606
Query: 110 --TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA---HKRHRNEGVVEFESSSDMK 164
R ++ V NL +W+ LKD + G V YAD + + + GVV+FES +
Sbjct: 607 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAE 666
Query: 165 KALDKLDNAELNGRRI 180
+A ++ +L+GR I
Sbjct: 667 RACRMMNGMKLSGREI 682
Score = 54 (24.1 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 162 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 221
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 222 SMFNGQLLFDRPMHVKM 238
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 145 (56.1 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 56 GGNRFEPYANPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 114
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 115 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 146
Score = 96 (38.9 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 36/111 (32%), Positives = 53/111 (47%)
Query: 76 DRS--QERGRRGYGSYRAPPPRRGWGHDRDDRYGPPT-RSDHRLIVENLSSRVSWQDLKD 132
DR+ ERG G GS+ G GH P R ++ V NL +W+ LKD
Sbjct: 580 DRTIEMERGNFG-GSFAGSFGGAG-GH------APGVARKACQIFVRNLPFDFTWKMLKD 631
Query: 133 FMRQVGEVCYADA---HKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
+ G V YAD + + + GVV+FES ++A ++ +L+GR I
Sbjct: 632 KFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 682
Score = 54 (24.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 162 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 221
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 222 SMFNGQLLFDRPMHVKM 238
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 145 (56.1 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 56 GGNRFEPYANPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 114
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 115 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 146
Score = 96 (38.9 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 36/111 (32%), Positives = 53/111 (47%)
Query: 76 DRS--QERGRRGYGSYRAPPPRRGWGHDRDDRYGPPT-RSDHRLIVENLSSRVSWQDLKD 132
DR+ ERG G GS+ G GH P R ++ V NL +W+ LKD
Sbjct: 580 DRTIEMERGNFG-GSFAGSFGGAG-GH------APGVARKACQIFVRNLPFDFTWKMLKD 631
Query: 133 FMRQVGEVCYADA---HKRHRNEGVVEFESSSDMKKALDKLDNAELNGRRI 180
+ G V YAD + + + GVV+FES ++A ++ +L+GR I
Sbjct: 632 KFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 682
Score = 54 (24.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 162 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 221
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 222 SMFNGQLLFDRPMHVKM 238
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 145 (56.1 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 70 GGNRFEPYANPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 128
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 129 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 160
Score = 97 (39.2 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 39/136 (28%), Positives = 61/136 (44%)
Query: 58 NGKSLLGERVTVEIAKGIDR-SQERGRRGYGSY-RAPPPRRG-WGHDRDDRYG-----PP 109
N +G + + GI+R G G S+ RA RG +G +G P
Sbjct: 561 NSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAP 620
Query: 110 --TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA---HKRHRNEGVVEFESSSDMK 164
R ++ V NL +W+ LKD + G V YAD + + + GVV+FES +
Sbjct: 621 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAE 680
Query: 165 KALDKLDNAELNGRRI 180
+A ++ +L+GR I
Sbjct: 681 RACRMMNGMKLSGREI 696
Score = 54 (24.1 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 176 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 235
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 236 SMFNGQLLFDRPMHVKM 252
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 127 (49.8 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 33/85 (38%), Positives = 49/85 (57%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---GFGFVEFEDYRDADDAVYELNGK 60
++VY+G L V ER+LE + +G IR V + G+ F++FED RDA DA+ E++GK
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 61 SLLGERVTVEIAKGIDRSQERGRRG 85
+ G RV +G + GR G
Sbjct: 62 N--GWRVEQSHNRGGGGGRGGGRGG 84
Score = 36 (17.7 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 77 RSQERGRRGYGSYRAPPPRR 96
R + RG R+PPP R
Sbjct: 156 RRRSPSPRGRNYSRSPPPYR 175
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 131 (51.2 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 31/73 (42%), Positives = 44/73 (60%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRI--RDVILKNG--FGFVEFEDYRDADDAVYELNGKS 61
+YIG L +++L YG I DV NG + FVE+++ RDADDA+ LNG +
Sbjct: 3 LYIGRLSVETTQKNLNDHFSKYGTITRNDVKKTNGRCYAFVEYKERRDADDALKALNGTT 62
Query: 62 LLGERVTVEIAKG 74
LL +++VE AKG
Sbjct: 63 LLNSKISVEWAKG 75
Score = 42 (19.8 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 76 DRSQERGRRGYGSYRAPPPRRGWGHDRD-DRYGPPTRS 112
DRS++R R G R RR DR DR +RS
Sbjct: 227 DRSRDRSRSNGGGSRYSS-RRDRSRDRSRDRSRDRSRS 263
Score = 35 (17.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 76 DRSQERGRRGYGSYRAPPPRRGWGHDRD 103
DRS++R R G R R + RD
Sbjct: 200 DRSRDRSRDGGNIIRDTSRDRRRNNSRD 227
>MGI|MGI:1926465 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003823
"antigen binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1926465 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
ChiTaRS:HNRNPM InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AK011521 EMBL:BC005758 EMBL:BC065172
IPI:IPI00132443 IPI:IPI00480357 RefSeq:NP_001103383.1
RefSeq:NP_084080.1 UniGene:Mm.311439 ProteinModelPortal:Q9D0E1
SMR:Q9D0E1 IntAct:Q9D0E1 STRING:Q9D0E1 PhosphoSite:Q9D0E1
PaxDb:Q9D0E1 PRIDE:Q9D0E1 Ensembl:ENSMUST00000087582
Ensembl:ENSMUST00000148178 GeneID:76936 KEGG:mmu:76936
InParanoid:Q9D0E1 NextBio:346119 Bgee:Q9D0E1 Genevestigator:Q9D0E1
Uniprot:Q9D0E1
Length = 729
Score = 145 (56.1 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 56 GGNRFEPYSNPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 114
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 115 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 146
Score = 98 (39.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 39/136 (28%), Positives = 61/136 (44%)
Query: 58 NGKSLLGERVTVEIAKGIDR-SQERGRRGYGSY-RAPPPRRG-WGHDRDDRYG-----PP 109
N +G + + GI+R G G S+ RA RG +G +G P
Sbjct: 586 NSLERMGPAMGPALGAGIERMGLAMGGAGGASFDRAIEMERGNFGGSFAGSFGGAGGHAP 645
Query: 110 --TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA---HKRHRNEGVVEFESSSDMK 164
R ++ V NL +W+ LKD + G V YAD + + + GVV+FES +
Sbjct: 646 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAE 705
Query: 165 KALDKLDNAELNGRRI 180
+A ++ +L+GR I
Sbjct: 706 RACRMMNGMKLSGREI 721
Score = 56 (24.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 201 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAI 260
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 261 SMFNGQLLFDRPMHVKM 277
>UNIPROTKB|F1MY44 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00826962
RefSeq:NP_001178152.1 UniGene:Bt.48882 PRIDE:F1MY44
Ensembl:ENSBTAT00000011559 GeneID:515290 KEGG:bta:515290
NextBio:20871749 ArrayExpress:F1MY44 Uniprot:F1MY44
Length = 730
Score = 145 (56.1 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 57 GGNRFEPYANPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 115
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 116 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 147
Score = 97 (39.2 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 39/136 (28%), Positives = 61/136 (44%)
Query: 58 NGKSLLGERVTVEIAKGIDR-SQERGRRGYGSY-RAPPPRRG-WGHDRDDRYG-----PP 109
N +G + + GI+R G G S+ RA RG +G +G P
Sbjct: 587 NSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAP 646
Query: 110 --TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA---HKRHRNEGVVEFESSSDMK 164
R ++ V NL +W+ LKD + G V YAD + + + GVV+FES +
Sbjct: 647 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAE 706
Query: 165 KALDKLDNAELNGRRI 180
+A ++ +L+GR I
Sbjct: 707 RACRMMNGMKLSGREI 722
Score = 54 (24.1 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 202 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 261
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 262 SMFNGQLLFDRPMHVKM 278
>UNIPROTKB|P52272 [details] [associations]
symbol:HNRNPM "Heterogeneous nuclear ribonucleoprotein M"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0042382 "paraspeckles" evidence=IDA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005887 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 EMBL:L03532 EMBL:L32611 EMBL:AF061832
EMBL:BC000138 EMBL:BC008895 EMBL:BC019580 IPI:IPI00171903
IPI:IPI00383296 PIR:S35532 RefSeq:NP_005959.2 RefSeq:NP_112480.2
UniGene:Hs.465808 UniGene:Hs.666214 PDB:2DGV PDB:2DH9 PDB:2DO0
PDB:2OT8 PDBsum:2DGV PDBsum:2DH9 PDBsum:2DO0 PDBsum:2OT8
ProteinModelPortal:P52272 SMR:P52272 DIP:DIP-29336N IntAct:P52272
MINT:MINT-4999200 STRING:P52272 PhosphoSite:P52272 DMDM:55977747
REPRODUCTION-2DPAGE:IPI00383296 UCD-2DPAGE:P52272 PaxDb:P52272
PRIDE:P52272 Ensembl:ENST00000325495 Ensembl:ENST00000348943
GeneID:4670 KEGG:hsa:4670 UCSC:uc010dwd.3 UCSC:uc010dwe.3 CTD:4670
GeneCards:GC19P008509 H-InvDB:HIX0137462 HGNC:HGNC:5046
HPA:CAB016113 HPA:HPA024344 MIM:160994 neXtProt:NX_P52272
PharmGKB:PA29370 HOGENOM:HOG000231932 HOVERGEN:HBG054880
InParanoid:P52272 KO:K12887 OMA:PGIERMA OrthoDB:EOG4RBQJN
PhylomeDB:P52272 ChiTaRS:HNRNPM EvolutionaryTrace:P52272
GenomeRNAi:4670 NextBio:17994 ArrayExpress:P52272 Bgee:P52272
CleanEx:HS_HNRNPM Genevestigator:P52272 GermOnline:ENSG00000099783
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
Uniprot:P52272
Length = 730
Score = 145 (56.1 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 57 GGNRFEPYANPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 115
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 116 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 147
Score = 97 (39.2 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 39/136 (28%), Positives = 61/136 (44%)
Query: 58 NGKSLLGERVTVEIAKGIDR-SQERGRRGYGSY-RAPPPRRG-WGHDRDDRYG-----PP 109
N +G + + GI+R G G S+ RA RG +G +G P
Sbjct: 587 NSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAP 646
Query: 110 --TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA---HKRHRNEGVVEFESSSDMK 164
R ++ V NL +W+ LKD + G V YAD + + + GVV+FES +
Sbjct: 647 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAE 706
Query: 165 KALDKLDNAELNGRRI 180
+A ++ +L+GR I
Sbjct: 707 RACRMMNGMKLSGREI 722
Score = 54 (24.1 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 202 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 261
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 262 SMFNGQLLFDRPMHVKM 278
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 141 (54.7 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/106 (31%), Positives = 60/106 (56%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 113 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 171
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D ++Q G+ G +GS AP GW
Sbjct: 172 MHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGW 217
Score = 109 (43.4 bits), Expect = 0.00059, P = 0.00059
Identities = 46/191 (24%), Positives = 86/191 (45%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRD-VILKN-------GFGFVEFEDYRDADDAVYE 56
K+++GGL + + L + YG + D VI+K+ GFGFV+F+D + V
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKD----PNCV-- 64
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRL 116
G L T++ + ID + RG R P + GW R D + +++
Sbjct: 65 --GTVLASRPHTLD-GRNID-PKPCTPRGMQPERTRP-KEGWKGPRSD-----SSKSNKI 114
Query: 117 IVENLSSRVSWQDLKDFMRQVGEVCYA----DAHK-RHRNEGVVEFESSSDMKKALDKLD 171
V + +L+++ ++ G V DA K R R G + FE + +A++ +
Sbjct: 115 FVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH 173
Query: 172 NAELNGRRIRL 182
++ G+++ +
Sbjct: 174 FHDIMGKKVEV 184
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 141 (54.7 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/106 (31%), Positives = 60/106 (56%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D ++Q G+ G +GS AP GW
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGW 218
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 141 (54.7 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/106 (31%), Positives = 60/106 (56%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D ++Q G+ G +GS AP GW
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGW 218
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 139 (54.0 bits), Expect = 5.4e-09, P = 5.4e-09
Identities = 33/106 (31%), Positives = 59/106 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 57 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 115
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D +SQ G+ G +GS P GW
Sbjct: 116 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGW 161
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 117 (46.2 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVY 55
T +++ + R DL + YG I DV + GF +V+FED RDA+DA++
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 56 ELNGKSLLGERVTVEIAKGIDR---SQERGRRGYGSY 89
L+ K + G ++ ++ A+G DR +Q + + G Y
Sbjct: 70 NLDRKWICGRQIEIQFAQG-DRKTPNQMKAKEGRNVY 105
Score = 39 (18.8 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 83 RRGYGSYRAPP---PRRGWGHDRDDR 105
RR Y + P PRR H +DR
Sbjct: 139 RRSYSPRNSRPTGRPRRSRSHSDNDR 164
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 141 (54.7 bits), Expect = 6.6e-09, P = 6.6e-09
Identities = 49/185 (26%), Positives = 78/185 (42%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRI--RDVILKNG----FGFVEFEDYRDADDAVYELNG 59
+++G L Y DL +F G++ D+I G G VEF + D D A+ + +G
Sbjct: 163 IFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEFTNSDDVDRAIRQYDG 222
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRD-DRYGP--PTRSDHRL 116
+ ++ V Q+ PPP + DR G R H +
Sbjct: 223 AFFMDRKIFVR--------QDN----------PPPSNNIKERKALDR-GELRHNRKTHEV 263
Query: 117 IVENLSSRVSWQDLKDFMRQVGEVCYADAHKR----HRNEGVVEFESSSDMKKALDKLDN 172
IV+NL + V+WQ LKD ++ G V +AD G V F D+ +A++K +
Sbjct: 264 IVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEKYNG 323
Query: 173 AELNG 177
+ G
Sbjct: 324 YSIEG 328
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 140 (54.3 bits), Expect = 6.7e-09, P = 6.7e-09
Identities = 44/119 (36%), Positives = 59/119 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K++IGGL E+ LE YGRI +V+L GF F+ FE DA AV +
Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRD 68
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHR 115
+NGKSL G+ +++A+ + E GRRG R+ RG R R G P R R
Sbjct: 69 MNGKSLDGK--AIKVAQATKPAFESGRRGPPLSRSRGRSRGL---RGARGGGPRRPPSR 122
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 142 (55.0 bits), Expect = 7.2e-09, P = 7.2e-09
Identities = 39/114 (34%), Positives = 60/114 (52%)
Query: 78 SQERGRRGYGSYRAPPPR-RGWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ 136
S+E+ G S+R P + R G D+ T +R+ + N+ WQ +KD MR+
Sbjct: 50 SKEKNSGGRKSHRYHPYKERSGGADKK------TTHRNRVFISNIPYDKKWQAIKDLMRE 103
Query: 137 -VGEVCYADAHK----RHRNEGVVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VGEV Y + K + R GVVEF+ +KKA++ + +LNGR + + ED
Sbjct: 104 KVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAIEVMSKHDLNGRPLNIKED 157
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 41/123 (33%), Positives = 57/123 (46%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + + L Y L + + YGR+ DV + GF FV F D RDA+DA+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 56 ELNGKSLLGERVTVEIAK-GIDRSQERGRRGYGSYRAPPPRR--GWGHDRDDRYGPPTRS 112
++G L G + V++A+ G RRG PPPRR G G+ R R +RS
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRRG------PPPRRYGGGGYGRRSRSRSRSRS 127
Query: 113 DHR 115
R
Sbjct: 128 RSR 130
>UNIPROTKB|E2RMR3 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AAEX03012475 Ensembl:ENSCAFT00000029410 Uniprot:E2RMR3
Length = 743
Score = 143 (55.4 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y PT+ +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 109 GGNRFEPYANPTKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRVSV 167
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L+GR +++ ED
Sbjct: 168 VVEFKMEESMKKAAEVLNKHSLSGRPLKVKED 199
Score = 97 (39.2 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 39/136 (28%), Positives = 61/136 (44%)
Query: 58 NGKSLLGERVTVEIAKGIDR-SQERGRRGYGSY-RAPPPRRG-WGHDRDDRYG-----PP 109
N +G + + GI+R G G S+ RA RG +G +G P
Sbjct: 600 NSLERMGPAMGPALGAGIERMGLAMGGGGGASFDRAIEMERGNFGGSFAGSFGGAGGHAP 659
Query: 110 --TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADA---HKRHRNEGVVEFESSSDMK 164
R ++ V NL +W+ LKD + G V YAD + + + GVV+FES +
Sbjct: 660 GVARKACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAE 719
Query: 165 KALDKLDNAELNGRRI 180
+A ++ +L+GR I
Sbjct: 720 RACRMMNGMKLSGREI 735
Score = 54 (24.1 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 215 LGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 274
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 275 SMFNGQLLFDRPMHVKM 291
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 139 (54.0 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 33/106 (31%), Positives = 59/106 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 162
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D +SQ G+ G +GS P GW
Sbjct: 163 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGW 208
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 139 (54.0 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 33/106 (31%), Positives = 59/106 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D +SQ G+ G +GS P GW
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGW 218
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 139 (54.0 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 33/106 (31%), Positives = 59/106 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D +SQ G+ G +GS P GW
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGW 218
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 139 (54.0 bits), Expect = 9.0e-09, P = 9.0e-09
Identities = 33/106 (31%), Positives = 59/106 (55%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 114 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 172
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D +SQ G+ G +GS P GW
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGW 218
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 134 (52.2 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 39/150 (26%), Positives = 71/150 (47%)
Query: 38 GFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIA-KGIDRSQERGRRGYGSYRAPPPRR 96
GFGF+EF + A + + +LNG S+ G ++++++ K QE +R R P
Sbjct: 725 GFGFIEFSSKQGAYECIKKLNGSSIDGYEISLKLSDKNETNVQEINKR-----RELPENS 779
Query: 97 GWGHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR----HRNE 152
+ G P + ++I++NL + ++++ GE+ K+ HR
Sbjct: 780 KQSIKSNG--GQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPNGGHRGF 837
Query: 153 GVVEFESSSDMKKALDKLDNAELNGRRIRL 182
G VEF + + K A++ L N+ GR + L
Sbjct: 838 GFVEFLTEEEAKNAMEALGNSHFYGRHLVL 867
Score = 43 (20.2 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 7/32 (21%), Positives = 17/32 (53%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL 35
T + + +P+ +E +L + +G + V+L
Sbjct: 553 TVLLVKNIPFKTQEHELHELFSKFGELSRVVL 584
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 113 (44.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDV-ILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
K++IG LP E+++ + YG++ + I+KN +GFV ED A+DA+ L+ L
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKN-YGFVHIEDKTAAEDAIRNLHHHKLH 61
Query: 64 GERVTVEIAKGIDRSQER 81
G + VE +K ++ +
Sbjct: 62 GVCINVEASKNKSKASTK 79
Score = 70 (29.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDK 169
+++ +L V N+S + +L+ + G V D K + V E + D +A+
Sbjct: 74 SKASTKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKDY---AFVHMERAEDAVEAIRG 130
Query: 170 LDNAELNGRRIRL 182
LDN E G+R+R+
Sbjct: 131 LDNTEFQGKRMRV 143
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 134 (52.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 40/133 (30%), Positives = 68/133 (51%)
Query: 67 VTVEIAKGID-RSQERGRRGYGSYRAP-PPRRGWGHDRDDRYGPPTRSDH-------RLI 117
++++ + ++ R +ER RRG G+ + G G+ + G D R+
Sbjct: 1 MSMDASNSVESREKERDRRGRGARGSRFTDADGNGNGAGSQGGGVAARDRSRERRNCRVY 60
Query: 118 VENLSSRVSWQDLKD-FMRQVGEVCYA----DAHKRHRNEGVVEFESSSDMKKALDKLDN 172
+ N+ WQDLKD F R VG + Y D + R G+VEF+ +++KAL+K++
Sbjct: 61 ISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKMNR 120
Query: 173 AELNGRRIRLIED 185
E+NGR + + ED
Sbjct: 121 YEVNGRELVVKED 133
Score = 114 (45.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 107 GPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKA 166
G +SD +I++N+ +WQ L+D R++G+V +A+ R + GVV F D + A
Sbjct: 557 GASRKSD-TIIIKNVPITCTWQTLRDKFREIGDVKFAEI--RGNDVGVVRFFKERDAELA 613
Query: 167 LDKLDNAELNGRRIRL 182
+ +D + L+GR I++
Sbjct: 614 IALMDGSRLDGRNIKV 629
Score = 78 (32.5 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 5 KVYIGGLPYGVRERDLEK-FVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYE 56
+VYI +PY R +DL+ F + G I V L G G VEF+D + A+ +
Sbjct: 58 RVYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEK 117
Query: 57 LNGKSLLGERVTVEIAKGIDRSQ 79
+N + G + V+ G R Q
Sbjct: 118 MNRYEVNGRELVVKEDHGEQRDQ 140
Score = 75 (31.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYEL 57
KV++ L Y V + L++ K G+++ V L GF +E++ +A A+ L
Sbjct: 233 KVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEAVQAISML 292
Query: 58 NGKSLLGERVTVEIAKGIDRSQ 79
+ + L R+TV + + D+++
Sbjct: 293 DRQMLFDRRMTVRLDRIPDKNE 314
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 40/120 (33%), Positives = 61/120 (50%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE + +G I +V++ GFGF+ F D A DA+
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR-YGPPTRSDHR 115
+NG+SL G ++ V+ A G RG RG G++ A R + D+ YG R D R
Sbjct: 67 MNGESLDGRQIRVDHA-G---KSARGTRG-GAFGAHGRGRSYSRGGGDQGYGSG-RYDSR 120
>UNIPROTKB|F1NS10 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:AADN02063494
EMBL:AADN02063495 EMBL:AADN02063496 IPI:IPI00599569
Ensembl:ENSGALT00000000512 ArrayExpress:F1NS10 Uniprot:F1NS10
Length = 559
Score = 139 (54.0 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y P + +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 45 GGNRFEPYANPAKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 103
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L GR +++ ED
Sbjct: 104 VVEFKMEESMKKAAEVLNKHSLGGRPLKVKED 135
Score = 94 (38.1 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 23/69 (33%), Positives = 36/69 (52%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADA---HKRHRNEGVVEFESSSDMKKALDKLD 171
++ V NL +W+ LKD + G V YAD + + + GVV FES ++A ++
Sbjct: 483 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVRFESPEVAERACRMMN 542
Query: 172 NAELNGRRI 180
+L GR I
Sbjct: 543 GIQLRGREI 551
Score = 56 (24.8 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 21/77 (27%), Positives = 37/77 (48%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKN------GFGFVEFEDYRDADDAV 54
+G+ V++ L Y V + L++ G + R IL++ G G V FE +A A+
Sbjct: 191 LGSTVFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAI 250
Query: 55 YELNGKSLLGERVTVEI 71
NG+ L + V++
Sbjct: 251 SMFNGQLLFDRPMHVKM 267
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 33/106 (31%), Positives = 58/106 (54%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GG+P+ E +L ++ K +G + +V++ GFGF+ FED + D AV
Sbjct: 104 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-N 162
Query: 57 LNGKSLLGERVTVEIAKGID-RSQERGRRG---YGSYRAPPPRRGW 98
++ ++G++V V+ A+ D +SQ G G +GS P GW
Sbjct: 163 MHFHDIMGKKVEVKRAEPRDSKSQTPGPPGASQWGSRIMPSAANGW 208
>CGD|CAL0003843 [details] [associations]
symbol:NPL3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:2000805 "negative regulation of
termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 101 (40.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 110 TRSDHRLIVENLSSRVSWQDLKDFMRQV--GEVCYADAHKRHRNEGV---VEFESSSDMK 164
TR +RL++ NL+ +WQD+KDF+R+ + Y N ++F+S D+
Sbjct: 84 TRGKYRLLITNLAEGTAWQDIKDFVREKTDSQPSYVKVFTNFDNGETTCSMQFQSREDLD 143
Query: 165 KALDKLDNAELNGRRIRLIED 185
+A+ LD A I ED
Sbjct: 144 RAIPLLDKAVFRDITIGAEED 164
Score = 83 (34.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKS 61
V ++++ L V +++ + +V L G+ FV FE+ DA A+ LN
Sbjct: 7 VTKQLFVRPLRNDVTREEVQDHFSRAAPVVEVRLMEGYAFVTFENEDDAKQALELLNDAE 66
Query: 62 LLGERVTVEIAKGIDRSQERGR 83
GE++ +E AK R RG+
Sbjct: 67 FNGEKLQIEFAKE-RREDTRGK 87
>UNIPROTKB|Q59ZV3 [details] [associations]
symbol:NPL3 "Putative uncharacterized protein NPL3"
species:237561 "Candida albicans SC5314" [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 101 (40.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 25/81 (30%), Positives = 40/81 (49%)
Query: 110 TRSDHRLIVENLSSRVSWQDLKDFMRQV--GEVCYADAHKRHRNEGV---VEFESSSDMK 164
TR +RL++ NL+ +WQD+KDF+R+ + Y N ++F+S D+
Sbjct: 84 TRGKYRLLITNLAEGTAWQDIKDFVREKTDSQPSYVKVFTNFDNGETTCSMQFQSREDLD 143
Query: 165 KALDKLDNAELNGRRIRLIED 185
+A+ LD A I ED
Sbjct: 144 RAIPLLDKAVFRDITIGAEED 164
Score = 83 (34.3 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKS 61
V ++++ L V +++ + +V L G+ FV FE+ DA A+ LN
Sbjct: 7 VTKQLFVRPLRNDVTREEVQDHFSRAAPVVEVRLMEGYAFVTFENEDDAKQALELLNDAE 66
Query: 62 LLGERVTVEIAKGIDRSQERGR 83
GE++ +E AK R RG+
Sbjct: 67 FNGEKLQIEFAKE-RREDTRGK 87
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 137 (53.3 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDM 163
P R+ R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +
Sbjct: 46 PNRN--RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFV 103
Query: 164 KKALDKLDNAELNGRRIRLIED 185
KKAL+ ++ +L+GR + + ED
Sbjct: 104 KKALETMNKYDLSGRPLNIKED 125
>UNIPROTKB|Q5ZL80 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380
GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
OrthoDB:EOG4RBQJN InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AADN02063494 EMBL:AADN02063495 EMBL:AADN02063496
EMBL:AJ719854 IPI:IPI00594541 RefSeq:NP_001026103.1
UniGene:Gga.13144 SMR:Q5ZL80 STRING:Q5ZL80
Ensembl:ENSGALT00000000510 GeneID:420054 KEGG:gga:420054
InParanoid:Q5ZL80 NextBio:20823019 Uniprot:Q5ZL80
Length = 709
Score = 139 (54.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 34/92 (36%), Positives = 50/92 (54%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEG 153
G +R + Y P + +R + N+ V WQ LKD +++ VGEV Y DA + R
Sbjct: 62 GGNRFEPYANPAKR-YRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCA 120
Query: 154 VVEFESSSDMKKALDKLDNAELNGRRIRLIED 185
VVEF+ MKKA + L+ L GR +++ ED
Sbjct: 121 VVEFKMEESMKKAAEVLNKHSLGGRPLKVKED 152
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 137 (53.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDM 163
P R+ R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +
Sbjct: 44 PNRN--RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFV 101
Query: 164 KKALDKLDNAELNGRRIRLIED 185
KKAL+ ++ +L+GR + + ED
Sbjct: 102 KKALETMNKYDLSGRPLNIKED 123
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 137 (53.3 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDM 163
P R+ R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +
Sbjct: 97 PNRN--RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFV 154
Query: 164 KKALDKLDNAELNGRRIRLIED 185
KKAL+ ++ +L+GR + + ED
Sbjct: 155 KKALETMNKYDLSGRPLNIKED 176
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDM 163
P R+ R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +
Sbjct: 88 PNRN--RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFV 145
Query: 164 KKALDKLDNAELNGRRIRLIED 185
KKAL+ ++ +L+GR + + ED
Sbjct: 146 KKALETMNKYDLSGRPLNIKED 167
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 42/124 (33%), Positives = 62/124 (50%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + ER LE +G I +V++ GFGF+ F + A +A+
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG--YGSYRAPPPRRGWGHDR---DDRYGPPTR 111
+NG+SL G ++ V+ A G RG RG +G Y RG G+ R D YG R
Sbjct: 67 MNGESLDGRQIRVDHA-G---KSARGSRGGAFGGYE-----RGRGYPRGGGDQGYGSG-R 116
Query: 112 SDHR 115
D+R
Sbjct: 117 YDNR 120
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 137 (53.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDM 163
P R+ R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +
Sbjct: 88 PNRN--RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFV 145
Query: 164 KKALDKLDNAELNGRRIRLIED 185
KKAL+ ++ +L+GR + + ED
Sbjct: 146 KKALETMNKYDLSGRPLNIKED 167
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 137 (53.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDM 163
P R+ R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +
Sbjct: 88 PNRN--RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFV 145
Query: 164 KKALDKLDNAELNGRRIRLIED 185
KKAL+ ++ +L+GR + + ED
Sbjct: 146 KKALETMNKYDLSGRPLNIKED 167
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 137 (53.3 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDM 163
P R+ R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +
Sbjct: 97 PNRN--RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFV 154
Query: 164 KKALDKLDNAELNGRRIRLIED 185
KKAL+ ++ +L+GR + + ED
Sbjct: 155 KKALETMNKYDLSGRPLNIKED 176
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 137 (53.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 32/82 (39%), Positives = 49/82 (59%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDM 163
P R+ R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +
Sbjct: 34 PNRN--RVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFV 91
Query: 164 KKALDKLDNAELNGRRIRLIED 185
KKAL+ ++ +L+GR + + ED
Sbjct: 92 KKALETMNKYDLSGRPLNIKED 113
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 136 (52.9 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDMKKALD 168
+R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +KKAL+
Sbjct: 50 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 109
Query: 169 KLDNAELNGRRIRLIED 185
++ +L+GR + + ED
Sbjct: 110 TMNKYDLSGRPLNIKED 126
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 34/97 (35%), Positives = 51/97 (52%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRD--VIL------KNGFGFVEFEDYRDADDA 53
+G+K+Y+G L Y V + DLE+ YG ++ V++ GFGFVE ++A A
Sbjct: 1 MGSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAA 60
Query: 54 VYELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYR 90
+ LNGK + G + V A+ +R RG G G R
Sbjct: 61 IAGLNGKEMDGRNLMVNEARPPER---RGGSGGGGRR 94
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 136 (52.9 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQ-VGEVCYA----DAHKRHRNEGVVEFESSSDMKKALD 168
+R+ + N+ + WQ +KD MR+ VGEV Y DA + R GVVEF+ +KKAL+
Sbjct: 118 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 177
Query: 169 KLDNAELNGRRIRLIED 185
++ +L+GR + + ED
Sbjct: 178 TMNKYDLSGRPLNIKED 194
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 40/126 (31%), Positives = 61/126 (48%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE +G I +V++ GFGF+ F + A DA+
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 57 LNGKSLLGERVTVEIAK------------GIDRSQERGR--RGYGS--YRAPPPRRGWGH 100
+NG+SL G ++ V+ A G RS RG +GYGS Y + P G+G+
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGSRGGAFGGRGRSYSRGGGDQGYGSGRYDSRPGGYGYGY 126
Query: 101 DRDDRY 106
R Y
Sbjct: 127 GRSRDY 132
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 131 (51.2 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 40/107 (37%), Positives = 56/107 (52%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---GFGFVEFEDYRDADDAVYELNGK 60
++VY+G L V ER+LE + +G +R V + G+ F++FED RDA DA+ L+GK
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYG 107
+ G RV ++S RG RG G R G G R R G
Sbjct: 62 N--GWRV--------EQSHNRGERGGGGRGGD--RGGGGGGRGGRGG 96
>ZFIN|ZDB-GENE-040426-2706 [details] [associations]
symbol:srsf2a "serine/arginine-rich splicing
factor 2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2706
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339
HOVERGEN:HBG107480 eggNOG:NOG254270 GeneTree:ENSGT00700000104403
HOGENOM:HOG000276233 KO:K12891 OrthoDB:EOG4D26RH OMA:SAPPRRY
EMBL:CR352342 EMBL:BC046045 IPI:IPI00482409 RefSeq:NP_998547.1
UniGene:Dr.76609 SMR:Q7ZV13 STRING:Q7ZV13
Ensembl:ENSDART00000080173 GeneID:406691 KEGG:dre:406691 CTD:406691
InParanoid:Q7ZV13 NextBio:20818218 Uniprot:Q7ZV13
Length = 225
Score = 132 (51.5 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 38/119 (31%), Positives = 55/119 (46%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + + L Y L + + YGR+ DV + GF FV F D RDA+DA+
Sbjct: 14 TSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 56 ELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDH 114
++G L G + V++A+ R + + S R PPRR G+ R R P R H
Sbjct: 74 AMDGALLDGRELRVQMAR-YGRPPD----AHYSRRGAPPRRYGGYGRRSRSRSPRRRKH 127
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 39/120 (32%), Positives = 60/120 (50%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE +G I +V++ GFGF+ F + A DA+
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR-YGPPTRSDHR 115
+NG+SL G ++ V+ A G RG RG G++ A R + D+ YG R D R
Sbjct: 67 MNGESLDGRQIRVDHA-G---KSARGTRG-GAFGAHGRGRSYSRGGGDQGYGSG-RYDSR 120
>UNIPROTKB|Q3ZBU5 [details] [associations]
symbol:FUSIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0016482 "cytoplasmic transport"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0016482 GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375
GeneTree:ENSGT00700000104403 HOGENOM:HOG000276233 eggNOG:NOG312850
KO:K12900 OrthoDB:EOG4HMJBR OMA:PRYAYLI EMBL:DAAA02006422
EMBL:BC103100 IPI:IPI00708284 RefSeq:NP_001071594.1
UniGene:Bt.49361 Ensembl:ENSBTAT00000010616 GeneID:768310
KEGG:bta:768310 CTD:456627 InParanoid:Q3ZBU5 NextBio:20918570
Uniprot:Q3ZBU5
Length = 182
Score = 117 (46.2 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVY 55
T +++ + R DL + YG I DV + GF +V+FED RDA+DA++
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 56 ELNGKSLLGERVTVEIAKGIDR---SQERGRRGYGSY 89
L+ K + G ++ ++ A+G DR +Q + + G Y
Sbjct: 70 NLDRKWICGRQIEIQFAQG-DRKTPNQMKAKEGRNVY 105
Score = 40 (19.1 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 83 RRGYGSYRAPP--PRRGWGHDRDDR 105
RR Y P PRR H +DR
Sbjct: 139 RRSYSPRNRPTGRPRRSRSHSDNDR 163
>UNIPROTKB|Q5JRI3 [details] [associations]
symbol:SRSF10 "Serine/arginine-rich-splicing factor 10"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:AL590609 HOGENOM:HOG000276233
UniGene:Hs.3530 DNASU:10772 GeneID:100996657 GeneID:10772
KEGG:hsa:100996657 KEGG:hsa:10772 CTD:10772 HGNC:HGNC:16713
KO:K12900 NextBio:40903 IPI:IPI00646643 RefSeq:NP_001177936.1
RefSeq:XP_003960062.1 SMR:Q5JRI3 Ensembl:ENST00000484146
UCSC:uc021oip.1 GenomeRNAi:10772 Uniprot:Q5JRI3
Length = 182
Score = 117 (46.2 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 30/97 (30%), Positives = 51/97 (52%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVY 55
T +++ + R DL + YG I DV + GF +V+FED RDA+DA++
Sbjct: 10 TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69
Query: 56 ELNGKSLLGERVTVEIAKGIDR---SQERGRRGYGSY 89
L+ K + G ++ ++ A+G DR +Q + + G Y
Sbjct: 70 NLDRKWICGRQIEIQFAQG-DRKTPNQMKAKEGRNVY 105
Score = 40 (19.1 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 83 RRGYGSYRAPP--PRRGWGHDRDDR 105
RR Y P PRR H +DR
Sbjct: 139 RRSYSPRNRPTGRPRRSRSHSDNDR 163
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 38/114 (33%), Positives = 59/114 (51%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE +G I +V++ GFGF+ F + A +A+
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDR---DDRYG 107
+NG+SL G ++ V+ A G RG RG G++ A RG G+ R D YG
Sbjct: 67 MNGESLDGRQIRVDHA-G---KSARGTRG-GAFGA----RGRGYSRGGGDQGYG 111
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 134 (52.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 53/189 (28%), Positives = 88/189 (46%)
Query: 6 VYIGGLPYGVRE----RDLEKFVKGYGRI---RDVILKNGFGFVEFEDYRDADDAVYELN 58
+++G L + V E ++ E+F + RI RD GFG+VEF + DA A +
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGELSARIMTERDTGRSRGFGYVEFTNAADAAKAYEAMK 338
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIV 118
+ G ++ ++ A G ++++G G+ RA R +G D+ P SD L V
Sbjct: 339 EHEIDGRKINLDYATGRPANKDQG--GFKE-RAQNRARSFG----DQTSP--ESD-TLFV 388
Query: 119 ENLSSRVSWQDLKDFMRQVGEVCY----ADAHK-RHRNEGVVEFESSSDMKKALDKLDNA 173
NL + + + G V D R + G V++ S + +KA ++L A
Sbjct: 389 GNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEARKAYNELQGA 448
Query: 174 ELNGRRIRL 182
E++GR IRL
Sbjct: 449 EIDGRPIRL 457
>CGD|CAL0003946 [details] [associations]
symbol:orf19.1389 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0016071 "mRNA metabolic process"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003946 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000101 KO:K14396
RefSeq:XP_714561.1 ProteinModelPortal:Q59YD7 GeneID:3643794
KEGG:cal:CaO19.1389 Uniprot:Q59YD7
Length = 163
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 40/128 (31%), Positives = 54/128 (42%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVI--------LKNGFGFVEFEDYRDADDAV 54
G VY+G + Y LE+F G G I V L G+ ++EFE A+
Sbjct: 27 GRSVYVGNVDYQSTPEQLEEFFHGVGVIERVTILFDRFSGLPKGYAYIEFEQTESVQKAI 86
Query: 55 YELNGKSLLGE--RVTVEIAK--GIDRSQERGR-----RGYGSYRAPPPRRGWGHDRDDR 105
EL+GK G RVT + G R + RG RG G +R RG + R R
Sbjct: 87 DELHGKEFRGRELRVTAKRTNLPGFRRGRGRGGFRARGRGRGGFRGRGRGRGGFNSRGTR 146
Query: 106 YGPPTRSD 113
G ++D
Sbjct: 147 NGDSEQAD 154
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 38/120 (31%), Positives = 59/120 (49%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE +G I +V++ GFGF+ F + A D +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDR-YGPPTRSDHR 115
+NG+SL G ++ V+ A G RG RG G++ A R + D+ YG R D R
Sbjct: 67 MNGESLDGRQIRVDHA-G---KSARGTRG-GAFGAHGRGRSYSRGGGDQGYGSG-RYDSR 120
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 134 (52.2 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 35/96 (36%), Positives = 53/96 (55%)
Query: 3 GTK-VYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-------GFGFVEFEDYRDADDAV 54
G+K ++ G L Y + D+E F K G + DV L + G+G +EF +A A+
Sbjct: 382 GSKTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKAL 441
Query: 55 YELNGKSLLGERVTVEIA--KGIDRSQERGRRGYGS 88
E+NGK LLG V +++A +G R+ GR+G GS
Sbjct: 442 -EMNGKLLLGRDVRLDLANERGTPRNSNPGRKGEGS 476
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 128 (50.1 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 43/124 (34%), Positives = 61/124 (49%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGR-IR-DVILKNG-----FGFVEFEDYRDADDAVY 55
GT +Y+ G +G R RDL + YGR +R D+ F FVE+ED RDAD+A +
Sbjct: 5 GTTLYVTGFSHGTRARDLAYEFERYGRLVRCDIPAPRSASSRLFAFVEYEDRRDADEAYH 64
Query: 56 ELNGKSLLGERVT-VEIAKGIDRSQ---ERGR-RGYGSYRAPPPRRGWGHDRDDRYGPPT 110
+++ K L + + +E A+ + E GR R GS R RR R PP
Sbjct: 65 DMHNKRLGRDDILKIEWARTPPSASWRFESGRDRDRGSDRGDRSRRSPRRGRSP--SPPR 122
Query: 111 RSDH 114
R D+
Sbjct: 123 RRDY 126
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 41/121 (33%), Positives = 55/121 (45%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + + L Y L + + YGR+ DV + GF FV F D RDA+DA+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 56 ELNGKSLLGERVTVEIAK-GIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDH 114
++G L G + V++A+ G RRG PPPRR G YG TRS
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRRG------PPPRRYGGGG----YGRRTRSPR 123
Query: 115 R 115
R
Sbjct: 124 R 124
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 102 (41.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 102 RDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-RHRNEGVVEFESS 160
++ + G R LIV NLS S + L++ ++ + ++ R + VEF ++
Sbjct: 447 QESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTA 506
Query: 161 SDMKKALDKLDNAELNGRRIRL 182
D K+AL+ +N E+ GR IRL
Sbjct: 507 EDAKEALNSCNNTEIEGRAIRL 528
Score = 82 (33.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/86 (24%), Positives = 45/86 (52%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG----FGFVEFEDYRDADDAVYELNGKS 61
+++ LPY V E +++ + +R V+ K G ++EF+ +A+ A+ E G
Sbjct: 371 LFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTE 430
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYG 87
+ G + ++ G ++SQ+ ++G G
Sbjct: 431 VDGRAMVIDYT-G-EKSQQESQKGGG 454
Score = 76 (31.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 39 FGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQE 80
FG+V+F D D A+ +LNGK L+G + +E AK + +E
Sbjct: 321 FGYVDFLSAEDMDKAL-QLNGKKLMGLEIKLEKAKSKESLKE 361
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 102 (41.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 102 RDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-RHRNEGVVEFESS 160
++ + G R LIV NLS S + L++ ++ + ++ R + VEF ++
Sbjct: 449 QESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTA 508
Query: 161 SDMKKALDKLDNAELNGRRIRL 182
D K+AL+ +N E+ GR IRL
Sbjct: 509 EDAKEALNSCNNTEIEGRAIRL 530
Score = 82 (33.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/86 (24%), Positives = 45/86 (52%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG----FGFVEFEDYRDADDAVYELNGKS 61
+++ LPY V E +++ + +R V+ K G ++EF+ +A+ A+ E G
Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTE 432
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYG 87
+ G + ++ G ++SQ+ ++G G
Sbjct: 433 VDGRAMVIDYT-G-EKSQQESQKGGG 456
Score = 76 (31.8 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 39 FGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQE 80
FG+V+F D D A+ +LNGK L+G + +E AK + +E
Sbjct: 323 FGYVDFLSAEDMDKAL-QLNGKKLMGLEIKLEKAKSKESLKE 363
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 102 (41.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 102 RDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-RHRNEGVVEFESS 160
++ + G R LIV NLS S + L++ ++ + ++ R + VEF ++
Sbjct: 449 QESQKGGGERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEFPTA 508
Query: 161 SDMKKALDKLDNAELNGRRIRL 182
D K+AL+ +N E+ GR IRL
Sbjct: 509 EDAKEALNSCNNTEIEGRAIRL 530
Score = 82 (33.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 21/86 (24%), Positives = 45/86 (52%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG----FGFVEFEDYRDADDAVYELNGKS 61
+++ LPY V E +++ + +R V+ K G ++EF+ +A+ A+ E G
Sbjct: 373 LFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTE 432
Query: 62 LLGERVTVEIAKGIDRSQERGRRGYG 87
+ G + ++ G ++SQ+ ++G G
Sbjct: 433 VDGRAMVIDYT-G-EKSQQESQKGGG 456
Score = 76 (31.8 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 39 FGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDRSQE 80
FG+V+F D D A+ +LNGK L+G + +E AK + +E
Sbjct: 323 FGYVDFLSAEDMDKAL-QLNGKKLMGLEIKLEKAKSKESLKE 363
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGK 60
+NGK
Sbjct: 67 MNGK 70
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGK 60
+NGK
Sbjct: 67 MNGK 70
>UNIPROTKB|G3MWK4 [details] [associations]
symbol:SRSF12 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000395 "mRNA 5'-splice site recognition" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000381 GO:GO:0000395 GeneTree:ENSGT00700000104403
OMA:XSRHRRF EMBL:DAAA02026452 Ensembl:ENSBTAT00000064733
Uniprot:G3MWK4
Length = 261
Score = 130 (50.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 51/182 (28%), Positives = 78/182 (42%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVY 55
T +++ + R DL + YG I DV + GF +V+FED RDA+DA+Y
Sbjct: 10 TSLFVRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 56 ELNGKSLLGERVTVEIAKGIDR-------SQER---GRRGYGSYRAPPPRRGWGHDRDDR 105
LN K + G ++ ++ A+G DR S+ER + R+P RR R
Sbjct: 70 NLNRKWVCGRQIEIQFAQG-DRKTPGQMKSKERHPCSPSDHRRSRSPSQRRT--RSRSSS 126
Query: 106 YGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR--HRNEGVVEFESSSDM 163
+G R L E+ R S+ K + + + R RN G E S +
Sbjct: 127 WGRNRRRSDSL-KESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNSGSRERSRSKSL 185
Query: 164 KK 165
+K
Sbjct: 186 QK 187
>UNIPROTKB|Q8WXF0 [details] [associations]
symbol:SRSF12 "Serine/arginine-rich splicing factor 12"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=NAS] [GO:0051082 "unfolded protein binding" evidence=NAS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0050733
"RS domain binding" evidence=NAS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IDA] [GO:0016482 "cytoplasmic transport"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005654 GO:GO:0000166
EMBL:CH471051 GO:GO:0051082 Gene3D:3.30.70.330 GO:GO:0000244
GO:GO:0003723 GO:GO:0016482 GO:GO:0048025 GO:GO:0000381
HOVERGEN:HBG107480 EMBL:AL353135 GO:GO:0000395 GO:GO:0050733
EMBL:AF449428 EMBL:AK314008 EMBL:BC021715 IPI:IPI00942141
RefSeq:NP_542781.3 UniGene:Hs.254414 ProteinModelPortal:Q8WXF0
SMR:Q8WXF0 IntAct:Q8WXF0 STRING:Q8WXF0 PhosphoSite:Q8WXF0
DMDM:47606193 PRIDE:Q8WXF0 DNASU:135295 Ensembl:ENST00000452027
GeneID:135295 KEGG:hsa:135295 UCSC:uc021zcq.1 CTD:135295
GeneCards:GC06M089805 HGNC:HGNC:21220 HPA:HPA049782
neXtProt:NX_Q8WXF0 PharmGKB:PA165618223 InParanoid:Q8WXF0
OMA:XSRHRRF GenomeRNAi:135295 NextBio:83483 ArrayExpress:Q8WXF0
Bgee:Q8WXF0 Genevestigator:Q8WXF0 GermOnline:ENSG00000154548
Uniprot:Q8WXF0
Length = 261
Score = 124 (48.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVY 55
T ++I + R DL + YG I DV + GF +V+FED RDA+DA+Y
Sbjct: 10 TSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALY 69
Query: 56 ELNGKSLLGERVTVEIAKGIDR 77
LN K + G ++ ++ A+G DR
Sbjct: 70 NLNRKWVCGRQIEIQFAQG-DR 90
Score = 36 (17.7 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 77 RSQERGRRGYGSYRAPPPRRGWG 99
RS+ RR + ++ PRR +G
Sbjct: 153 RSKSLPRRSTSARQSRTPRRNFG 175
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 121 (47.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 32/97 (32%), Positives = 49/97 (50%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYE 56
+ ++GGL + + DL++ +G + D + N GFGFV F+D + DA+ E
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGY--GSYRA 91
+NGK L G +TV A+ G RG G YR+
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRS 103
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE +G I +V++ GFGF+ F + A A+
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSY-RAPPPRRGWGHDRDDRYGPPTRSDHR 115
+NG+SL G ++ V+ A R G G+G++ R RG G D YG D R
Sbjct: 67 MNGESLDGRQIRVDHAGKSARGTRGG--GFGAHGRGRSYSRGGG---DQGYGSGRYYDSR 121
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 128 (50.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 41/123 (33%), Positives = 56/123 (45%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + + L Y L + + YGR+ DV + GF FV F D RDA+DA+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 56 ELNGKSLLGERVTVEIAK-GIDRSQERGRRGYGSYRAPPPRR--GWGHDRDDRYGPPTRS 112
++G L G + V++A+ G RRG PPPRR G G+ R R P R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRRG------PPPRRYGGGGYGRRSR-SPRRRR 126
Query: 113 DHR 115
R
Sbjct: 127 RSR 129
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 128 (50.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 41/123 (33%), Positives = 56/123 (45%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + + L Y L + + YGR+ DV + GF FV F D RDA+DA+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 56 ELNGKSLLGERVTVEIAK-GIDRSQERGRRGYGSYRAPPPRR--GWGHDRDDRYGPPTRS 112
++G L G + V++A+ G RRG PPPRR G G+ R R P R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRRG------PPPRRYGGGGYGRRSR-SPRRRR 126
Query: 113 DHR 115
R
Sbjct: 127 RSR 129
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 128 (50.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 41/123 (33%), Positives = 56/123 (45%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + + L Y L + + YGR+ DV + GF FV F D RDA+DA+
Sbjct: 14 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 73
Query: 56 ELNGKSLLGERVTVEIAK-GIDRSQERGRRGYGSYRAPPPRR--GWGHDRDDRYGPPTRS 112
++G L G + V++A+ G RRG PPPRR G G+ R R P R
Sbjct: 74 AMDGAVLDGRELRVQMARYGRPPDSHHSRRG------PPPRRYGGGGYGRRSR-SPRRRR 126
Query: 113 DHR 115
R
Sbjct: 127 RSR 129
WARNING: HSPs involving 315 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.141 0.421 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 262 185 0.00080 110 3 11 22 0.46 32
31 0.41 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 565
No. of states in DFA: 591 (63 KB)
Total size of DFA: 158 KB (2094 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 20.31u 0.12s 20.43t Elapsed: 00:00:07
Total cpu time: 20.34u 0.12s 20.46t Elapsed: 00:00:08
Start: Thu Aug 15 16:03:50 2013 End: Thu Aug 15 16:03:58 2013
WARNINGS ISSUED: 2