RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10320
(262 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 72.0 bits (175), Expect = 4e-16
Identities = 30/209 (14%), Positives = 65/209 (31%), Gaps = 46/209 (22%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYE 56
K++IGGL + + L + +G + D ++ GFGFV + + D A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRL 116
R + + D + + ++
Sbjct: 68 ---------------------------RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKI 100
Query: 117 IVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDKLD 171
V + L+D+ Q G++ + + R V F+ + K +
Sbjct: 101 FVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQK 159
Query: 172 NAELNGRRIRLIEDKPRGGGRGRSRSSSS 200
+NG + + + + +S+S
Sbjct: 160 YHTVNGHNCEVRKALSK-----QEMASAS 183
Score = 46.9 bits (110), Expect = 4e-07
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 9/78 (11%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRI--------RDVILKNGFGFVEFEDYRDADDAVY 55
K+++GG+ E L + + YG+I R K GF FV F+D+ D V
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV- 156
Query: 56 ELNGKSLLGERVTVEIAK 73
++ G V A
Sbjct: 157 IQKYHTVNGHNCEVRKAL 174
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 68.7 bits (168), Expect = 8e-16
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 2 VGTKVYIGGL-PYGVRERDLEKFVKGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGK 60
+ ++V+IG L V++ D+E YG+I + GF FV++ + R+A AV +G+
Sbjct: 14 MNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGR 73
Query: 61 SLLGERVTVEIAKGIDRSQERGRRGYGS 88
+ G+ + + +A + R G S
Sbjct: 74 MIAGQVLDINLA----AEPKVNRSGPSS 97
Score = 46.0 bits (109), Expect = 2e-07
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 108 PPTRSDHRLIVENLSS-RVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKA 166
P + R+ + NL++ V D++ + G++ H+ V++ + + + A
Sbjct: 10 DPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGC---SVHKGFAFVQYVNERNARAA 66
Query: 167 LDKLDNAELNGRRIRLIEDKPRGGGRGRSRS 197
+ D + G+ + + R S
Sbjct: 67 VAGEDGRMIAGQVLDINLAAEPKVNRSGPSS 97
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 66.9 bits (163), Expect = 3e-15
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAV 54
T +Y+ LP + + L+ YG I + G FV + +A +A+
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 65
Query: 55 YELNGKSLLG--ERVTVEIA 72
LN G + ++V +A
Sbjct: 66 SALNNVIPEGGSQPLSVRLA 85
Score = 54.6 bits (131), Expect = 1e-10
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 7/77 (9%)
Query: 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-----GVVEFESSSDMKKA 166
D L V NL ++ L + G + + + V + + ++A
Sbjct: 5 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEA 64
Query: 167 LDKLDNAELNG--RRIR 181
+ L+N G + +
Sbjct: 65 ISALNNVIPEGGSQPLS 81
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 66.1 bits (161), Expect = 5e-15
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYEL 57
K+ + L +GV + D+++ +G ++ + G V FE DA A+ +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 58 NGKSLLGERVTVEIA 72
NG L G + +++
Sbjct: 62 NGVPLDGRPMNIQLV 76
Score = 58.4 bits (141), Expect = 4e-12
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRH----RNEGVVEFESSSDMKKALDKL 170
+L+V NL VS D+++ + G + A H V FE +D KA+ +
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61
Query: 171 DNAELNGRRIRL 182
+ L+GR + +
Sbjct: 62 NGVPLDGRPMNI 73
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 65.3 bits (159), Expect = 1e-14
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
+Y+G L V E L + G I + + G+ +V F+ DA+ A+
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 57 LNGKSLLGERVTVEIAK 73
+N + G+ V + ++
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
Score = 55.7 bits (134), Expect = 4e-11
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR-----HRNEGVVEFESSSDMKKALDKL 170
L V +L V+ L + G + + V F+ +D ++ALD +
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 171 DNAELNGRRIRL 182
+ + G+ +R+
Sbjct: 63 NFDVIKGKPVRI 74
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 64.3 bits (156), Expect = 6e-14
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYE 56
V +YI LPY + ++ YG IR + + N G +V +ED DA +A
Sbjct: 6 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDH 65
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRR 84
L+G ++ + V Q+ +
Sbjct: 66 LSGFNVCNRYLVVLYYNANRAFQKMDTK 93
Score = 54.6 bits (131), Expect = 2e-10
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 2/103 (1%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGEV--CYADAHKRHRNEGVVEFESSSDMKKA 166
P + L + NL +++ +++ D + G + R V +E D K A
Sbjct: 3 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNA 62
Query: 167 LDKLDNAELNGRRIRLIEDKPRGGGRGRSRSSSSRSRSKSRSR 209
D L + R + ++ + + +
Sbjct: 63 CDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEK 105
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 63.4 bits (154), Expect = 9e-14
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL---------KNGFGFVEFEDYRDADDAV 54
+K+ + +P+ +R++ + +G ++ V L GFGFV+F +DA A
Sbjct: 9 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAF 68
Query: 55 YEL-NGKSLLGERVTVEIAKGIDRSQ 79
L + L G R+ +E A Q
Sbjct: 69 NALCHSTHLYGRRLVLEWADSEVTVQ 94
Score = 54.2 bits (130), Expect = 2e-10
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 108 PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA------DAHKRHRNEGVVEFESSS 161
P ++ +++V N+ + + +++++ GE+ HR G V+F +
Sbjct: 3 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 62
Query: 162 DMKKALDKLDN-AELNGRRIRL 182
D KKA + L + L GRR+ L
Sbjct: 63 DAKKAFNALCHSTHLYGRRLVL 84
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 62.7 bits (152), Expect = 1e-13
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + + LP + +R+L + G I + G+ FV+F D+ A+
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 56 ELNGKSLLGERVTVEIAK 73
LNG ++ +R+ V A+
Sbjct: 63 VLNGITVRNKRLKVSYAR 80
Score = 60.4 bits (146), Expect = 9e-13
Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYAD-----AHKRHRNEGVVEFESSSDMKKA 166
S+ LIV L ++ ++L R +G + V+F S D ++A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 167 LDKLDNAELNGRRIRLIEDKP 187
+ L+ + +R+++ +P
Sbjct: 61 IKVLNGITVRNKRLKVSYARP 81
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 61.9 bits (150), Expect = 3e-13
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKS 61
+++++G LP + E ++ K + YG+ +V + GFGF+ E A+ A EL+
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 68
Query: 62 LLGERVTVEIAK 73
L G+++ V A
Sbjct: 69 LRGKQLRVRFAC 80
Score = 56.1 bits (135), Expect = 4e-11
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Query: 107 GPPTRSDH-RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKK 165
G T + RL V NL ++ ++++ + G+ + + G + E+ + +
Sbjct: 1 GEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVF-IHKDKGFGFIRLETRTLAEI 59
Query: 166 ALDKLDNAELNGRRIRL 182
A +LDN L G+++R+
Sbjct: 60 AKVELDNMPLRGKQLRV 76
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 61.1 bits (148), Expect = 4e-13
Identities = 17/76 (22%), Positives = 35/76 (46%), Gaps = 9/76 (11%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYE 56
K++IGGL + + L ++ +G +++ ++ GFGFV F D D +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 60
Query: 57 LNGKSLLGERVTVEIA 72
+ L + + ++A
Sbjct: 61 QSRHELDSKTIDPKVA 76
Score = 50.4 bits (120), Expect = 3e-09
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDK 169
++ + LS + + + L+++ Q GEV KR R G V F + + K L
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 60
Query: 170 LDNAELNGRRIR 181
EL+ + I
Sbjct: 61 QSRHELDSKTID 72
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 61.5 bits (149), Expect = 4e-13
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--GFGFVEFEDYRDADDAVYELNGK 60
VY GG+ G+ ++ + + +G+I ++ + G+ FV F + A A+ +NG
Sbjct: 18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT 77
Query: 61 SLLGERVTVEIAK 73
++ G V K
Sbjct: 78 TIEGHVVKCYWGK 90
Score = 56.1 bits (135), Expect = 4e-11
Identities = 9/86 (10%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 103 DDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSD 162
+D + + + ++S ++ Q ++ G++ + V F +
Sbjct: 8 EDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR-VFPEKGYSFVRFSTHES 66
Query: 163 MKKALDKLDNAELNGRRIRLIEDKPR 188
A+ ++ + G ++ K
Sbjct: 67 AAHAIVSVNGTTIEGHVVKCYWGKES 92
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 61.6 bits (149), Expect = 5e-13
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 108 PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKAL 167
R+ L+ +NLS ++ +LK+ E+ + + +EF+S +D +K L
Sbjct: 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNL 70
Query: 168 DKLDNAELNGRRIRLIEDKPRGGGRG 193
++ AE++GR + L +GG RG
Sbjct: 71 EEKQGAEIDGRSVSLYYTGEKGGTRG 96
Score = 55.8 bits (134), Expect = 6e-11
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN---GFGFVEFEDYRDADDAVYELNG 59
+ L + + E +L++ + IR V G ++EF+ DA+ + E G
Sbjct: 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 75
Query: 60 KSLLGERVTVEIAKGIDRSQERGRRG 85
+ G V++ ++ G RG
Sbjct: 76 AEIDGRSVSLYYTG-----EKGGTRG 96
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 61.1 bits (148), Expect = 5e-13
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 12/90 (13%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRI--------RDVILKNGFGFVEFEDYRDADDAV 54
+Y+G L + E + + G I + GF FVE+ DA++A+
Sbjct: 7 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 55 YELNGKSLLGERVTVEIAKGIDRSQERGRR 84
+NG L + + G + GR+
Sbjct: 67 RYINGTRLDDRIIRTDWDAG----FKEGRQ 92
Score = 55.7 bits (134), Expect = 5e-11
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEV-----CYADAHKRHRNEGVVEFESSSDMKK 165
+ L V NLS + + + + + G++ K VE+ S +D +
Sbjct: 5 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAEN 64
Query: 166 ALDKLDNAELNGRRIRLIEDKPRGGGR 192
A+ ++ L+ R IR D GR
Sbjct: 65 AMRYINGTRLDDRIIRTDWDAGFKEGR 91
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 59.6 bits (144), Expect = 2e-12
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYG--------RIRDVILKNGFGFVEFEDYRDADDAVYE 56
K+++GGL E + ++ G+G + GF F+ F++ + E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM-E 59
Query: 57 LNGKSLLGERVTVEIA 72
++ + +++A
Sbjct: 60 KKYHNVGLSKCEIKVA 75
Score = 49.6 bits (118), Expect = 6e-09
Identities = 10/72 (13%), Positives = 27/72 (37%), Gaps = 6/72 (8%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-----GVVEFESSSDMKKALDK 169
++ V LS + ++++ GEV + ++ + F+ +KK ++K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 170 LDNAELNGRRIR 181
+ +
Sbjct: 61 -KYHNVGLSKCE 71
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 58.9 bits (142), Expect = 3e-12
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRI--------RDVILKNGFGFVEFEDYRDADDAV 54
+Y+ GLP + +++LE+ YGRI + + G GF+ F+ +A++A+
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 55 YELNGKSLLG--ERVTVEIA 72
LNG+ G E +TV+ A
Sbjct: 66 KGLNGQKPSGATEPITVKFA 85
Score = 47.0 bits (111), Expect = 6e-08
Identities = 13/75 (17%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 113 DHRLIVENLSSRVSWQDLKDFMRQVGEV-----CYADAHKRHRNEGVVEFESSSDMKKAL 167
D L V L ++ ++L+ Q G + R G + F+ + ++A+
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 168 DKLDNAELNGRRIRL 182
L+ + +G +
Sbjct: 66 KGLNGQKPSGATEPI 80
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 58.9 bits (142), Expect = 3e-12
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVI----------LKNGFGFVEFEDYRDADDA 53
+++IGG+P + ++ + + + GF FVE+E +R A A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 54 VYELNGKS--LLGERVTVEIAK 73
+L L G ++ V+ A+
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWAE 83
Score = 48.9 bits (116), Expect = 2e-08
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR-------HRNEGVVEFESSSDMKKAL 167
RL + + +++ + + +V E +R VE+ES A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 168 DKLDNA--ELNGRRIRLIEDKPR 188
KL +L G +I + +P
Sbjct: 63 RKLMPGRIQLWGHQIAVDWAEPE 85
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 58.6 bits (141), Expect = 4e-12
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGF--------GFVEFEDYRDADDAVY 55
T + + LP + + + G I L GFV + D +DA+ A+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 56 ELNGKSLLGERVTVEIAK 73
LNG L + + V A+
Sbjct: 63 TLNGLRLQTKTIKVSYAR 80
Score = 57.0 bits (137), Expect = 1e-11
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRN-----EGVVEFESSSDMKKA 166
S LIV L ++ ++ + +GE+ + G V + D +KA
Sbjct: 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKA 60
Query: 167 LDKLDNAELNGRRIRLIEDKP 187
++ L+ L + I++ +P
Sbjct: 61 INTLNGLRLQTKTIKVSYARP 81
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 58.1 bits (140), Expect = 6e-12
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 7 YIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----------GFGFVEFEDYRDADDAVY 55
+I L + E L+ G I+ + GFGFVE++ A A+
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 56 ELNGKSLLGERVTVEIAK 73
+L G ++ G ++ V I++
Sbjct: 62 QLQGHTVDGHKLEVRISE 79
Score = 56.6 bits (136), Expect = 2e-11
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 8/81 (9%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCY--------ADAHKRHRNEGVVEFESSSDMKKAL 167
L ++NL+ + + LK +VG + G VE++ +KAL
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 168 DKLDNAELNGRRIRLIEDKPR 188
+L ++G ++ + +
Sbjct: 61 KQLQGHTVDGHKLEVRISERA 81
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 57.3 bits (138), Expect = 1e-11
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 5 KVYIGGLPYGVRERDLEKFVK--GYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSL 62
+Y+ L E +EK G + V + FV F + DA +A+ LNGK L
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL 69
Query: 63 LGERVTVEIAKGIDRS 78
G + V +AK +D+
Sbjct: 70 DGSPIEVTLAKPVDKD 85
Score = 45.4 bits (107), Expect = 2e-07
Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
L V NL S + ++ + K+ R+ V F + D +A+ L+
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-KKIRDYAFVHFSNREDAVEAMKALNGKV 68
Query: 175 LNGRRIRLIEDKPR 188
L+G I + KP
Sbjct: 69 LDGSPIEVTLAKPV 82
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 57.1 bits (137), Expect = 1e-11
Identities = 19/86 (22%), Positives = 34/86 (39%), Gaps = 12/86 (13%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVIL---------KNGFGFVEFEDYRDADDAVYE 56
++IG L + E+ L +G I G+ F+ F + +D A+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERG 82
+NG+ L +TV A + +G
Sbjct: 61 MNGQYLCNRPITVSYAF---KKDSKG 83
Score = 48.6 bits (115), Expect = 1e-08
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 7/84 (8%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYAD------AHKRHRNEGVVEFESSSDMKKALDK 169
+ + NL + + L D G + + + F S A++
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 170 LDNAELNGRRIRLIEDKPRGGGRG 193
++ L R I + + +G
Sbjct: 61 MNGQYLCNRPITVSYAFKK-DSKG 83
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 56.9 bits (137), Expect = 1e-11
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG--------FGFVEFEDYRDADDAVYE 56
K++IGGLP + + +++ + +G ++ L + F E+ D D A+
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 57 LNGKSLLGERVTVEIAK 73
LNG L +++ V+ A
Sbjct: 63 LNGMQLGDKKLLVQRAS 79
Score = 56.9 bits (137), Expect = 2e-11
Identities = 10/81 (12%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALD 168
H+L + L + ++ +K+ + G + + K + E+ + +A+
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 169 KLDNAELNGRRIRLIEDKPRG 189
L+ +L +++ +
Sbjct: 62 GLNGMQLGDKKLLVQRASVGA 82
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 56.6 bits (136), Expect = 2e-11
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN------GFGFVEFEDYRDADDAVYEL 57
+Y+G L V E + + G + + + FVEF ++RDA A+ +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 58 NGKSLLGERVTVEIAK 73
NG+ +LG+ V V A
Sbjct: 69 NGRKILGKEVKVNWAT 84
Score = 48.5 bits (115), Expect = 2e-08
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQVGE---VCYADAHKRHRNEGVVEFESSSDMKKALDKL 170
L V NLS V+ + Q+G H + VEF D AL +
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAM 68
Query: 171 DNAELNGRRIRL 182
+ ++ G+ +++
Sbjct: 69 NGRKILGKEVKV 80
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 56.2 bits (135), Expect = 3e-11
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRD--VILKNGFGFVEFEDYRDADDAVYELNGKSL 62
K+YIG L V DL + V+LK+G+ FV++ D A A+ L+GK
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 63 L-GERVTVEIAK 73
L G+ + V+ +
Sbjct: 63 LHGKIMEVDYSV 74
Score = 46.2 bits (109), Expect = 9e-08
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA 173
++L + NLS V+ DL+ A V++ + +A++ L
Sbjct: 2 NKLYIGNLSPAVTADDLRQLFGDRKLP-LAGQVLLKSGYAFVDYPDQNWAIRAIETLSGK 60
Query: 174 -ELNGRRIRLIEDKPRG 189
EL+G+ + + +
Sbjct: 61 VELHGKIMEVDYSVSKK 77
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 56.2 bits (135), Expect = 3e-11
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 107 GPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR--HRNEGVVEFESSSDMK 164
GP +D R+ V NL + +D++D + G + D R VEFE D +
Sbjct: 8 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAE 67
Query: 165 KALDKLDNAELNGRRIRLIEDKPRGG 190
A+ D + +G R+R+ + G
Sbjct: 68 DAVYGRDGYDYDGYRLRVEFPRSGRG 93
Score = 55.1 bits (132), Expect = 1e-10
Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-----GFGFVEFEDYRDADDAVYELN 58
++Y+G LP +R +D+E YG IRD+ LKN F FVEFED RDA+DAVY +
Sbjct: 15 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRD 74
Query: 59 GKSLLGERVTVEIAKG 74
G G R+ VE +
Sbjct: 75 GYDYDGYRLRVEFPRS 90
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 56.2 bits (135), Expect = 3e-11
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYE 56
+Y+GGL V ++ L +G I D+ + GF FVEFE DA A+
Sbjct: 7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDN 66
Query: 57 LNGKSLLGERVTVEIAK 73
+N L G + V +AK
Sbjct: 67 MNESELFGRTIRVNLAK 83
Score = 52.7 bits (126), Expect = 6e-10
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 112 SDHRLIVENLSSRVSWQDLKDFMRQVGEV-----CYADAHKRHRNEGVVEFESSSDMKKA 166
+ L V L+ V + L G++ ++HR VEFE + D A
Sbjct: 4 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAA 63
Query: 167 LDKLDNAELNGRRIRLIEDKPR 188
+D ++ +EL GR IR+ KP
Sbjct: 64 IDNMNESELFGRTIRVNLAKPM 85
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 56.2 bits (135), Expect = 3e-11
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV--------ILKNGFGFVEFEDYRDADDAVY 55
VY+GGL V E L + G + + G+GFVEF DAD A+
Sbjct: 10 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIK 69
Query: 56 ELNGKSLLGERVTVEIAKGIDRS 78
++ L G+ + V A +++
Sbjct: 70 IMDMIKLYGKPIRVNKASAHNKN 92
Score = 52.7 bits (126), Expect = 6e-10
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 107 GPP--TRSDHRLIVENLSSRVSWQDLKDFMRQVGE-----VCYADAHKRHRNEGVVEFES 159
GP D + V L +VS L + Q G + +H+ G VEF S
Sbjct: 1 GPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLS 60
Query: 160 SSDMKKALDKLDNAELNGRRIRLIEDKPR 188
D A+ +D +L G+ IR+ +
Sbjct: 61 EEDADYAIKIMDMIKLYGKPIRVNKASAH 89
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 55.9 bits (134), Expect = 4e-11
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 109 PTRSD--HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR-----HRNEGVVEFESSS 161
P RS L V ++ ++++ GE+ + + +VE+E+
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 162 DMKKALDKLDNAELNGRRIRLIEDKPRG 189
A + L+ AE+ G+ I++ +G
Sbjct: 61 QALAAKEALNGAEIMGQTIQVDWCFVKG 88
Score = 54.7 bits (131), Expect = 1e-10
Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYG--------RIRDVILKNGFGFVEFEDYRDADDAV 54
G +++ + +E ++++ YG R G+ VE+E ++ A A
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 55 YELNGKSLLGERVTVEIAK 73
LNG ++G+ + V+
Sbjct: 67 EALNGAEIMGQTIQVDWCF 85
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 55.9 bits (134), Expect = 5e-11
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFE 158
G P RSD R++V L SWQDLKD MR+ A + G+VE+
Sbjct: 1 GSSGSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMRE--AGDVCYADVQKDGMGMVEYL 58
Query: 159 SSSDMKKALDKLDNAELNGRRIRLIEDKPRGGGRGRSRS 197
DM+ AL KLD+ + + S
Sbjct: 59 RKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSSGPSS 97
Score = 43.2 bits (101), Expect = 2e-06
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-GFGFVEFEDYRDADDAVYELNGKS 61
+V + GLP +DL+ ++ G + ++ G G VE+ D + A+ +L+
Sbjct: 15 DFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVEYLRKEDMEYALRKLDDTK 74
Query: 62 LLGERVTVEIAKGIDRSQERGRRG 85
+ G
Sbjct: 75 FRSHEGETSYIRVYPERSSGPSSG 98
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 55.2 bits (132), Expect = 6e-11
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
+++ P +R++ ++ + I F +++ DA V
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 56 ELNGKSLLGERVTVEIAK 73
+LNG + G + +++
Sbjct: 62 KLNGLKIEGYTLVTKVSN 79
Score = 53.6 bits (128), Expect = 2e-10
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 113 DHRLIVENLSSRVSWQDLKDFMRQVGEV-----CYADAHKRHRNEGVVEFESSSDMKKAL 167
+ L + N + ++++D ++ + V + R ++ S D + +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 168 DKLDNAELNGRRIRLIEDKP 187
+KL+ ++ G + P
Sbjct: 61 EKLNGLKIEGYTLVTKVSNP 80
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 55.3 bits (132), Expect = 7e-11
Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA 173
+R++V L SWQDLKD MR+ G+VCYAD ++ VEF DM A+ KLDN
Sbjct: 1 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGV--VEFVRKEDMTYAVRKLDNT 58
Query: 174 ELNGRRIRLI-----EDKPRGGGRGRSRS 197
+ D PR GRSRS
Sbjct: 59 KFRSHEGETAYIRVKVDGPRSPSYGRSRS 87
Score = 40.6 bits (94), Expect = 1e-05
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRI-RDVILKNGFGFVEFEDYRDADDAVYELNGKSLL 63
+V + GLP +DL+ ++ G + + ++G G VEF D AV +L+
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 61
Query: 64 GERVTVEIAKGIDRSQERGRRG 85
+ G
Sbjct: 62 SHEGETAYIRVKVDGPRSPSYG 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 54.7 bits (131), Expect = 8e-11
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYG--------RIRDVILKNGFGFVEFEDYRDADDAVYE 56
K+++GGL D++ + + +G + GFGFV FE + E
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-E 59
Query: 57 LNGKSLLGERVTVEIA 72
++ + + V + A
Sbjct: 60 IHFHEINNKMVECKKA 75
Score = 50.9 bits (121), Expect = 2e-09
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRN-----EGVVEFESSSDMKKALDK 169
++ V LS + +D+K + Q G+V A G V FES ++K +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-E 59
Query: 170 LDNAELNGRRIR 181
+ E+N + +
Sbjct: 60 IHFHEINNKMVE 71
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 55.0 bits (132), Expect = 9e-11
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV---ILKNGFGFVEFEDYRDADDAVYELNGK 60
+ V++G + E +L +F YG + DV F FV F D + A
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLC--GEDL 63
Query: 61 SLLGERVTVEIAKGIDRSQERGRRG 85
+ G V + A+ S G
Sbjct: 64 IIKGISVHISNAEPKHNSNSGPSSG 88
Score = 46.6 bits (110), Expect = 1e-07
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNA 173
+ V + ++ +L++F Q G+V K R V F + ++
Sbjct: 6 SGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG--EDL 63
Query: 174 ELNGRRIRLIEDKPRGGGRGRSRSS 198
+ G + + +P+ SS
Sbjct: 64 IIKGISVHISNAEPK-HNSNSGPSS 87
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 54.4 bits (130), Expect = 1e-10
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-----GVVEFESSSDMKKALDKL 170
L + L + QDL + G++ A G V+F+S S +KA+ L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 171 DNAELNGRRIR 181
+ + + +
Sbjct: 61 KASGVQAQMAK 71
Score = 49.4 bits (117), Expect = 6e-09
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVYEL 57
+YI GL G ++DL K + YG+I G+GFV+F+ A AV L
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 58 NGKSLLGERV 67
+ +
Sbjct: 61 KASGVQAQMA 70
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 56.1 bits (134), Expect = 1e-10
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGF--------GFVEFEDYRDADDA 53
V + + +P V E L + + YG I V + GFV+F+ A A
Sbjct: 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQA 100
Query: 54 VYELNGKSLLGERVTVEIAK-GIDRSQERGRRGYGS 88
+ LNG ++L +R+ V +A G R G G G+
Sbjct: 101 IAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGN 136
Score = 51.4 bits (122), Expect = 6e-09
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 108 PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-----GVVEFESSSD 162
P L+V + + V L+ + G + G V+F+S S
Sbjct: 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSS 96
Query: 163 MKKALDKLDNAELNGRRIRLIEDKPRGGGRGRSRSSSSRS 202
++A+ L+ + +R+++ G + + +
Sbjct: 97 AQQAIAGLNGFNILNKRLKVALAASGHQRPGIAGAVGDGN 136
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 54.7 bits (131), Expect = 1e-10
Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGY---------GRIRDVILKNGFGFVEFEDYRDADDAV 54
+YI L +++ +L+K + + + G FV F++ A +A+
Sbjct: 4 HTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNAL 63
Query: 55 YELNGKSLLGERVTVEIAK 73
+ G + + ++ AK
Sbjct: 64 RSMQGFPFYDKPMRIQYAK 82
Score = 45.8 bits (108), Expect = 2e-07
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 6/84 (7%)
Query: 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR------HRNEGVVEFESSSDMK 164
R +H + + NL+ ++ +LK + + R + V F+ S
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 165 KALDKLDNAELNGRRIRLIEDKPR 188
AL + + +R+ K
Sbjct: 61 NALRSMQGFPFYDKPMRIQYAKTD 84
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.8 bits (131), Expect = 1e-10
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYG--------RIRDVILKNGFGFVEFEDYRDADDAVYE 56
V++G +PY E L+ G R+ G+GF E++D A A+
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGS 88
LNG+ G + V+ A +E G G+
Sbjct: 70 LNGREFSGRALRVDNAASEKNKEELKSLGTGA 101
Score = 45.1 bits (106), Expect = 5e-07
Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEV-----CYADAHKRHRNEGVVEFESSSDMKK 165
RS + V N+ + + LKD +VG V Y + + G E++
Sbjct: 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALS 65
Query: 166 ALDKLDNAELNGRRIRLIEDKPR 188
A+ L+ E +GR +R+
Sbjct: 66 AMRNLNGREFSGRALRVDNAASE 88
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 54.3 bits (130), Expect = 2e-10
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
T + + +P+ V ++ F GY I + G V FE +A AV
Sbjct: 10 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVI 69
Query: 56 ELNGKSLLGERVTVEIA 72
+LN + + +V + +
Sbjct: 70 DLNDRPIGSRKVKLVLG 86
Score = 45.0 bits (106), Expect = 3e-07
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 107 GPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA-----DAHKRHRNEGVVEFESSS 161
G P + V+N+ VS ++ DF + + + E +V FES
Sbjct: 5 GKP--GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 62
Query: 162 DMKKALDKLDNAELNGRRIRL 182
+ A+ L++ + R+++L
Sbjct: 63 EATAAVIDLNDRPIGSRKVKL 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 53.9 bits (129), Expect = 2e-10
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAV 54
+ + GL ERDL + YG I DV + GF FV FE+ DA +A
Sbjct: 9 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAK 68
Query: 55 YELNGKSLLGERVTV 69
NG L G R+ V
Sbjct: 69 ERANGMELDGRRIRV 83
Score = 53.9 bits (129), Expect = 2e-10
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 104 DRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEV-----CYADAHKRHRNEGVVEFE 158
+R P + L V LS + +DL++ + G + Y +R R V FE
Sbjct: 2 NRANPD--PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFE 59
Query: 159 SSSDMKKALDKLDNAELNGRRIR 181
+ D K+A ++ + EL+GRRIR
Sbjct: 60 NVDDAKEAKERANGMELDGRRIR 82
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 54.3 bits (130), Expect = 2e-10
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 6 VYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKSLL 63
V GGL GV L ++ G + +++ + F + ++ A LNGK ++
Sbjct: 23 VANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVV 82
Query: 64 ---GERVTVEIA 72
G+++T+ +
Sbjct: 83 DDLGQKITLYLN 94
Score = 40.9 bits (95), Expect = 1e-05
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 100 HDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFES 159
H+ + T+S + L + VS L + + G V ++ + +
Sbjct: 8 HEGIETVSYATQS-LVVANGGLGNGVSRNQLLPVLEKCGLVDALL-MPPNKPYSFARYRT 65
Query: 160 SSDMKKALDKLDNAEL-NGRRIRLI 183
+ + K+A L+ E+ + ++
Sbjct: 66 TEESKRAYVTLNGKEVVDDLGQKIT 90
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 53.6 bits (128), Expect = 3e-10
Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYG-RIRDVILKNGFGFVEFEDYRDADDAVYELNGKSL 62
+ + + LP +++ +K Y + V FV + A +A+ + S
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF 65
Query: 63 LGERVTVEIAK 73
G+ + V++
Sbjct: 66 RGKDLIVQLQP 76
Score = 43.6 bits (102), Expect = 1e-06
Identities = 8/68 (11%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAE 174
++V+NL + Q++ D ++ + V + + A+
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAF--VTLLNGEQAQNAIQMFHQYS 64
Query: 175 LNGRRIRL 182
G+ + +
Sbjct: 65 FRGKDLIV 72
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.5 bits (128), Expect = 3e-10
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIR------DVILKNGFGFVEFEDYRDADDAVYEL 57
++++ +P+ R+ DL + +G+I + GFGFV FE+ DAD A +L
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 71
Query: 58 NGKSLLGERVTVEIAK 73
+G + G ++ V A
Sbjct: 72 HGTVVEGRKIEVNNAT 87
Score = 51.6 bits (123), Expect = 2e-09
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK---RHRNEGVVEFESSSDMKKAL 167
+ RL V N+ R DL+ Q G++ + + G V FE+S+D +A
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAR 68
Query: 168 DKLDNAELNGRRIRLIEDKPR 188
+KL + GR+I + R
Sbjct: 69 EKLHGTVVEGRKIEVNNATAR 89
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 53.1 bits (127), Expect = 3e-10
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRI--------RDVILKNGFGFVEFEDYRDADDAVYE 56
K++IGGL + ++DL+ + +G + GFGFV F++ D + +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-D 59
Query: 57 LNGKSLLGERVTVEIA 72
L G+ + + A
Sbjct: 60 QKEHKLNGKVIDPKRA 75
Score = 46.9 bits (111), Expect = 5e-08
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALDK 169
++ + LS + +DLKD+ + GEV R R G V F+ S + K +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-D 59
Query: 170 LDNAELNGRRIR 181
+LNG+ I
Sbjct: 60 QKEHKLNGKVID 71
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 53.1 bits (127), Expect = 3e-10
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDV--ILKNGFGFVEFEDYRDADDAVYELNGK 60
G +Y+ G + L +G I D+ FV +E AD AV ELNG
Sbjct: 5 GNTLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 62
Query: 61 SLLGERVTVEIAK 73
+ ++ V IA+
Sbjct: 63 QVESVQLKVNIAR 75
Score = 43.9 bits (103), Expect = 7e-07
Identities = 11/78 (14%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKL 170
R + L V ++ L+ G + RN V +E +A+ +L
Sbjct: 3 RKGNTLYVYGED--MTPTLLRGAFSPFGNIIDLS-MDPPRNCAFVTYEKMESADQAVAEL 59
Query: 171 DNAELNGRRIRLIEDKPR 188
+ ++ ++++ + +
Sbjct: 60 NGTQVESVQLKVNIARKQ 77
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 53.6 bits (128), Expect = 4e-10
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRI--------RDVILKNGFGFVEFEDYRDADDAVY 55
TK+++GGLPY + L K+ +G+G I R G+GFV D A+ A
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 56 ELNGKSLLGERVTVEIAKGIDRSQERGRRGYG 87
+ N + G + V +A + + + G+
Sbjct: 71 DPNPI-IDGRKANVNLAYLGAKPRSL-QTGFA 100
Score = 41.3 bits (96), Expect = 1e-05
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYAD-----AHKRHRNEGVVEFESSSDMKKALD 168
++ V L + L+ + G++ A + R G V + ++A
Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACK 70
Query: 169 KLDNAELNGRRIRL----IEDKPRGGGRGRSR 196
N ++GR+ + + KPR G +
Sbjct: 71 DP-NPIIDGRKANVNLAYLGAKPRSLQTGFAI 101
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 52.4 bits (125), Expect = 5e-10
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRI--------RDVILKNGFGFVEFEDYRDADDAVYE 56
K+++GG+ E L + + YG+I R K GF FV F+D D+ D +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD-HDSVDKIVI 62
Query: 57 LNGKSLLGERVTVEIA 72
++ G V A
Sbjct: 63 QKYHTVNGHNCEVRKA 78
Score = 43.2 bits (101), Expect = 1e-06
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVVEFESSSDMKKALDK 169
++ V + L+D+ Q G++ + + R V F+ + K +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-I 62
Query: 170 LDNAELNGRRIR 181
+NG
Sbjct: 63 QKYHTVNGHNCE 74
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 53.1 bits (127), Expect = 6e-10
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL----KNGFGFVEFEDYRDADDAVYELNG 59
++ + L Y V L + +G + +I +++ D A A L+G
Sbjct: 8 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDG 67
Query: 60 KSLL--GERVTVEIAKGIDRSQERGRRGYGSYRAPP 93
+++ + ++ +K + + Y P
Sbjct: 68 QNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPD 103
Score = 48.9 bits (116), Expect = 2e-08
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVC-YADAHKRHRNEGVVEFESSSDMKKALDKLDNA 173
R+IVENL V+ L + G V K ++ + ++++ + A LD
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ 68
Query: 174 EL--NGRRIRLIEDKPRGGGRGRSRSSSSRSR 203
+ +R+ K + ++ +SR
Sbjct: 69 NIYNACCTLRIDFSKLT---SLNVKYNNDKSR 97
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 52.3 bits (125), Expect = 7e-10
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG------FGFVEFEDYRDADDAVYEL 57
++I L + + L +G I + +GFV FE A+ A+ ++
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKM 68
Query: 58 NGKSLLGERVTVEIAK 73
NG L +V V K
Sbjct: 69 NGMLLNDRKVFVGRFK 84
Score = 49.6 bits (118), Expect = 8e-09
Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYAD---AHKRHRNEGVVEFESSSDMKKALDKLD 171
+ ++NL + + L D G + + G V FE+ ++A++K++
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 69
Query: 172 NAELNGRRIRLIEDKPR 188
LN R++ + K R
Sbjct: 70 GMLLNDRKVFVGRFKSR 86
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 53.2 bits (127), Expect = 7e-10
Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 114 HRLIVENLS-SRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDN 172
L+V NL+ RV+ Q L G+V + +V+ + + A+ L+
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNG 62
Query: 173 AELNGRRIRLIEDKPRGGGRGRSRSSSSRSRSKSRSRSRSSKSRSPRS 220
+L+G+ IR+ K + R +K S + + P S
Sbjct: 63 HKLHGKPIRITLSKHQNVQLPREGQEDQGL-TKDYGNSPLHRFKKPGS 109
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 52.4 bits (125), Expect = 8e-10
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYG--------RIRDVILKNGFGFVEFEDYRDADDAVY 55
+ + L RE DL++ + +G + + GF F+ F DA A+
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 56 ELNGKSLLGERVTVEIAK 73
++G + VE AK
Sbjct: 69 GVSGFGYDHLILNVEWAK 86
Score = 51.6 bits (123), Expect = 1e-09
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 7/88 (7%)
Query: 108 PPTRSD--HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKR-----HRNEGVVEFESS 160
P R+D + V NLS DL++ R G + K + + F
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 161 SDMKKALDKLDNAELNGRRIRLIEDKPR 188
D +A+ + + + + KP
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEWAKPS 88
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 52.4 bits (125), Expect = 9e-10
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYG--------RIRDVILKNGFGFVEFEDYRDADDAVY 55
++++ L Y E DLEK YG GF FV F A A
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 56 ELNGKSLLGERVTVEIAKGIDRSQERG 82
E++G+ G + V + + + G
Sbjct: 69 EVDGQVFQGRMLHVLPSTIKKEASQSG 95
Score = 51.3 bits (122), Expect = 3e-09
Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYAD-----AHKRHRNEGVVEFESSSDMKKALDK 169
RL V NLS S +DL+ G + K+ + V F KA +
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 170 LDNAELNGRRIRLIEDKPRGGGRGRSRSS 198
+D GR + ++ + SS
Sbjct: 70 VDGQVFQGRMLHVLPSTIKKEASQSGPSS 98
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 51.9 bits (124), Expect = 9e-10
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-GFGFVEFEDYRDADDAVYELNGKSL 62
T V + G P L +F + ++ V+ + + ++ A A+ +G+
Sbjct: 5 TWVTVFGFPQASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIF 63
Query: 63 LGERVTVEIAKGIDRS 78
+ + + ID++
Sbjct: 64 GE-SIMIGVKPCIDKN 78
Score = 37.6 bits (87), Expect = 1e-04
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 5/75 (6%)
Query: 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDN 172
D + V + L F + N + ++S +KAL D
Sbjct: 4 DTWVTVFGFPQASASYILLQFAQYG--NILKHVMSNTGNWMHIRYQSKLQARKAL-SKDG 60
Query: 173 AELNGRRIRLIEDKP 187
+ I KP
Sbjct: 61 RIFGESIM--IGVKP 73
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 52.0 bits (124), Expect = 1e-09
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVY 55
K++IGGL + E L + + +G++ D ++ GFGFV F + D A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM- 79
Query: 56 ELNGKSLLGERVTVEIAKGIDRSQERG 82
S+ G V + A +E G
Sbjct: 80 AARPHSIDGRVVEPKRAV---AREESG 103
Score = 42.4 bits (99), Expect = 4e-06
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 114 HRLIVENLSSRVSWQDLKDFMRQVGEVCYADAH-----KRHRNEGVVEFESSSDMKKALD 168
+L + LS + + L+++ Q G++ KR R G V F S +++ A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM- 79
Query: 169 KLDNAELNGRRIRLIEDKPR 188
++GR + R
Sbjct: 80 AARPHSIDGRVVEPKRAVAR 99
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 51.3 bits (122), Expect = 2e-09
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 16/87 (18%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNG----------------FGFVEFED 46
+ +Y+ GL V DL F K G ++ V +ED
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYED 67
Query: 47 YRDADDAVYELNGKSLLGERVTVEIAK 73
A AV +GK G ++ V +A+
Sbjct: 68 PPTAKAAVEWFDGKDFQGSKLKVSLAR 94
Score = 47.5 bits (112), Expect = 5e-08
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 13/91 (14%)
Query: 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-------------RHRNEGVVEF 157
+ + V+ L+ V+ DL DF +Q G V + + + V +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 158 ESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188
E K A++ D + G ++++ + +
Sbjct: 66 EDPPTAKAAVEWFDGKDFQGSKLKVSLARKK 96
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 51.2 bits (122), Expect = 3e-09
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAV 54
G ++I LP ++DL + +G + + FGFV +++ A A+
Sbjct: 18 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAI 77
Query: 55 YELNGKSLLGERVTVEIAKGIDRS 78
+NG + +R+ V++ + + S
Sbjct: 78 QSMNGFQIGMKRLKVQLKRSKNDS 101
Score = 47.0 bits (111), Expect = 8e-08
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 105 RYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVC-----YADAHKRHRNEGVVEFES 159
+ GP L + +L QDL G V + G V +++
Sbjct: 13 KEGPEGA---NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDN 69
Query: 160 SSDMKKALDKLDNAELNGRRIRLIEDKPR 188
+ A+ ++ ++ +R+++ + +
Sbjct: 70 PVSAQAAIQSMNGFQIGMKRLKVQLKRSK 98
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.7 bits (121), Expect = 4e-09
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRI--------RDVILKNGFGFVEFEDYRDADDAV 54
+ + + GLP+ E+DL+++ +G + GFGFV F +Y +
Sbjct: 8 TSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 67
Query: 55 YELNGKSLLGERVTVEIAK 73
+ + + G ++
Sbjct: 68 SQRHM--IDGRWCDCKLPN 84
Score = 42.3 bits (99), Expect = 3e-06
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 110 TRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-----GVVEFESSSDMK 164
+ LIV L + + QDLK++ GEV K + G V F
Sbjct: 5 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 64
Query: 165 KALDKLDNAELNGRRIRLIEDKPR 188
K + + ++GR +
Sbjct: 65 KVMSQRH--MIDGRWCDCKLPNSK 86
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 50.0 bits (119), Expect = 5e-09
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 9/76 (11%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYE 56
K++IGGL + + L + +G + D ++ GFGFV + + D A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 57 LNGKSLLGERVTVEIA 72
+ G V + A
Sbjct: 67 ARPHKVDGRVVEPKRA 82
Score = 41.9 bits (98), Expect = 4e-06
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVG-----EVCYADAHKRHRNEGVVEFESSSDMKKALDK 169
+L + LS + + L+ Q G V KR R G V + + ++ A+
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-N 66
Query: 170 LDNAELNGRRIR 181
+++GR +
Sbjct: 67 ARPHKVDGRVVE 78
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 50.1 bits (119), Expect = 5e-09
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN--------GFGFVEFEDYRDADDAVYE 56
K+++GGL + E+ LE+ YG+I +V++ GFGFV FE+ DA DA+
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 57 LNGKSLLGERVTVEIAK 73
+NGKS+ G ++ V+ A
Sbjct: 67 MNGKSVDGRQIRVDQAG 83
Score = 47.0 bits (111), Expect = 8e-08
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 113 DHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRH-----RNEGVVEFESSSDMKKAL 167
+ +L V LS + Q L+ + G++ K R G V FE+ D K A+
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 168 DKLDNAELNGRRIRLIEDKPRGGGR 192
++ ++GR+IR+ + R
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDNR 89
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 48.4 bits (115), Expect = 2e-08
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 13 YGVRERDLEKFVKGYGRIRDVILKN----GFGFVEFEDYRDADDAVYELNGKSLLGERVT 68
DL +G+IR ++L + G V F D +AD + L+G+ G ++T
Sbjct: 29 LNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQIT 88
Query: 69 VEIAKG 74
+ G
Sbjct: 89 AQAWDG 94
Score = 36.4 bits (84), Expect = 4e-04
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 128 QDLKDFMRQVGEVCYADAHKRH-RNEGVVEFESSSDMKKALDKLDNAELNGRRIR 181
+DL+ + G++ RH V F + + LD GR+I
Sbjct: 34 EDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQIT 88
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 47.5 bits (112), Expect = 3e-08
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN------GFGFVEFEDYRDADDAVYEL 57
T V + LP + + K+ K G I V + + F +EF Y A A+
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TK 59
Query: 58 NGKSLLGERVTVE 70
K + + V
Sbjct: 60 THKVVGQNEIIVS 72
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 48.2 bits (114), Expect = 3e-08
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYE 56
T +YI LP + E++LE +K +G++ + G GF E + +
Sbjct: 19 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGH 78
Query: 57 LNGKSLLGERVTVEIAK 73
NGK + +
Sbjct: 79 FNGKFIKTPPGVSAPTE 95
Score = 47.1 bits (111), Expect = 8e-08
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 111 RSDHRLIVENLSSRVSWQDLKDFMRQVGE----VCYADAHKRHRNEGVVEFESSSDMKKA 166
+ L + NL + Q+L++ ++ G+ D+ R G ES+ +
Sbjct: 16 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAV 75
Query: 167 LDKLDNAELNGRRIRLIEDKP 187
+ + + +P
Sbjct: 76 IGHFNGKFIKTPPGVSAPTEP 96
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 46.8 bits (110), Expect = 5e-08
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 6 VYIGGLPYGVRERDLEKFV-KGYGRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLG 64
+ I GLP V +++ + + V G FV + A+ A+ + L
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRE 60
Query: 65 ERVTVEIAK 73
++V++
Sbjct: 61 RELSVQLQP 69
Score = 38.4 bits (88), Expect = 5e-05
Identities = 8/66 (12%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL 175
+++ L V+ Q++ D + +++ V + + A++ + L
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSD--YELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRL 58
Query: 176 NGRRIR 181
R +
Sbjct: 59 RERELS 64
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 47.5 bits (112), Expect = 6e-08
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 14/90 (15%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDV--------ILKNGFGFVEFEDYRDADDAV 54
G V+I L + E L + ++ +G ++ V G F +F A +
Sbjct: 8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
Query: 55 YELN------GKSLLGERVTVEIAKGIDRS 78
+ G L G ++ V++A D +
Sbjct: 68 AAASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
Score = 42.1 bits (98), Expect = 4e-06
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 108 PPTRSDHR-LIVENLSSRVSWQDLKDFMRQVGEVCYA-----DAHKRHRNEGVVEFESSS 161
P ++ + + + NLS + L + ++Q G++ Y + + +F +
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 162 DMKKALDKL------DNAELNGRRIRLIEDKPR 188
+K L +L+GR++++ R
Sbjct: 62 AAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTR 94
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 46.7 bits (110), Expect = 8e-08
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK-------NGFGFVEFEDYRDADDAVYE 56
VYI G P D++++++ G++ ++ ++ G FV F+ A V E
Sbjct: 7 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFV-E 65
Query: 57 LNGKSLLGERVTVEIAK 73
G+ + +
Sbjct: 66 TPGQKYKETDLLILFKD 82
Score = 40.9 bits (95), Expect = 9e-06
Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 111 RSDHRLIVENLSSRVSWQDLKDFMRQVG----EVCYADAHKRHRNEGVVEFESSSDMKKA 166
+ + ++ + + D+K+++ G HK + V F+S KK
Sbjct: 4 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKF 63
Query: 167 LDKLDNAELNGRRIR 181
+ + + +
Sbjct: 64 V-ETPGQKYKETDLL 77
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 46.3 bits (109), Expect = 1e-07
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 3 GTKVYIGGLPYGVRERDLEKFV----------KGYGRIRDVILKNGFGFVEFEDYRDADD 52
G ++ I L + + +L + ++ N F+ FE+ A+
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAER 63
Query: 53 AVYELNGKSLLGERVTVEIAK 73
A+ ++N L ++V +A
Sbjct: 64 AL-QMNRSLLGNREISVSLAD 83
Score = 40.1 bits (93), Expect = 2e-05
Identities = 13/86 (15%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 110 TRSDHRLIVENLSSRVSWQDL-------KDFMRQVGEVCYADAHKRHRNEGVVEFESSSD 162
T +++ NLS+ + ++L + ++ H + + FE+
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 60
Query: 163 MKKALDKLDNAELNGRRIRLIEDKPR 188
++AL +++ + L R I + +
Sbjct: 61 AERAL-QMNRSLLGNREISVSLADKK 85
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 46.3 bits (109), Expect = 1e-07
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 108 PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGE-VCYADAHKRHRNEGVVEFESSSDMKKA 166
PP+ L + N+ VS +DLK G V ++ R +++ S + +A
Sbjct: 8 PPSA---TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQA 64
Query: 167 LDKLDNAEL-NGRRIRLIEDKPR 188
L L N +L +R+ K
Sbjct: 65 LIDLHNHDLGENHHLRVSFSKST 87
Score = 43.2 bits (101), Expect = 2e-06
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVI----LKNGFGFVEFEDYRDADDAVYELNG 59
+++ +P V E DL+ G + ++ +A A+ +L+
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHN 70
Query: 60 KSLL-GERVTVEIAK 73
L + V +K
Sbjct: 71 HDLGENHHLRVSFSK 85
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 45.8 bits (108), Expect = 2e-07
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDV--ILKNGFGFVEFEDYRDADDAVYELN 58
T++++GGL L + +G IR + + + F ++++E A A ++
Sbjct: 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMR 74
Query: 59 GKSLLGE--RVTVEIAK 73
G L G R+ V+ AK
Sbjct: 75 GFPLGGPDRRLRVDFAK 91
Score = 41.6 bits (97), Expect = 7e-06
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 108 PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKAL 167
PT RL V L S L + G + D H + + +++ES + A
Sbjct: 15 NPTT---RLWVGGLGPNTSLAALAREFDRFGSIRTID-HVKGDSFAYIQYESLDAAQAAC 70
Query: 168 DKLDNAELNGRRIRL 182
K+ L G RL
Sbjct: 71 AKMRGFPLGGPDRRL 85
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 45.4 bits (107), Expect = 4e-07
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV--------ILKNGFGFVEFEDYRDADDAVY 55
V+ L +R RDLE F G++RDV G +VEF + +
Sbjct: 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV-PLAI 77
Query: 56 ELNGKSLLGERVTVEIAK 73
L G+ LLG + V+ ++
Sbjct: 78 GLTGQRLLGVPIIVQASQ 95
Score = 43.9 bits (103), Expect = 1e-06
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 101 DRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK-----RHRNEGVV 155
+ D P R + L++R+ +DL+DF VG+V R + V
Sbjct: 6 EPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYV 65
Query: 156 EFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188
EF + A+ L L G I + +
Sbjct: 66 EFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 97
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.8 bits (105), Expect = 6e-07
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 107 GPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE-----GVVEFESSS 161
G P + L ++NLS RV+ +DL + E R + F +
Sbjct: 15 GEPNK---VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKE 71
Query: 162 DMKKALDKLDNAELNGRRIRLIEDKPR 188
+AL ++ +L G+ + + K +
Sbjct: 72 IAWQALHLVNGYKLYGKILVIEFGKNK 98
Score = 43.2 bits (101), Expect = 2e-06
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--------NGFGFVEFEDYRDADDAVY 55
+Y+ L V ERDL + + ++ G F+ F + A A++
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 56 ELNGKSLLGERVTVEIAK 73
+NG L G+ + +E K
Sbjct: 79 LVNGYKLYGKILVIEFGK 96
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 43.6 bits (102), Expect = 1e-06
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVILKN-------------GFGFVEFEDYRDAD 51
++Y+G +P+G+ E + F R+ + F F+EF +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 52 DAVYELNGKSLLGERVTVEIAKG 74
A+ +G G+ + +
Sbjct: 63 QAMA-FDGIIFQGQSLKIRRPHD 84
Score = 34.0 bits (77), Expect = 0.003
Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 115 RLIVENLSSRVSWQDLKDFMRQVGEVCYADAHK----------RHRNEGVVEFESSSDMK 164
RL V N+ ++ + + DF + + +N +EF S +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 165 KALDKLDNAELNGRRIR 181
+A+ D G+ ++
Sbjct: 63 QAMA-FDGIIFQGQSLK 78
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 44.0 bits (103), Expect = 1e-06
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 107 GPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA---DAHKRHRNEGVVEFESSSDM 163
+ + H + + L R + D+ +F + + R E VEF + D
Sbjct: 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDA 68
Query: 164 KKALDKLDNAELNGRRIRLIEDKPRGGGRGRSRS 197
A+ D A + R + L + G S
Sbjct: 69 VAAM-AKDKANMQHRYVELFLNSTAGTSGSGPSS 101
Score = 42.8 bits (100), Expect = 3e-06
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVILKNGFG------FVEFEDYRDADDAVYE 56
G V++ GLPY E D+ F +R I G VEF + DA A+
Sbjct: 15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAM-A 73
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+ ++ V + + S G
Sbjct: 74 KDKANMQHRYVELFLNSTAGTSGSGPSSG 102
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 43.9 bits (103), Expect = 1e-06
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVYE 56
+ V + E + + YG + ++ + G +V+F DA+ AV +
Sbjct: 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID 87
Query: 57 LNGKSLLGERVTVE 70
LN + G+ + E
Sbjct: 88 LNNRWFNGQPIHAE 101
Score = 38.1 bits (88), Expect = 2e-04
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 118 VENLSSRVSWQDLKDFMRQVGEV----CYADAHKRHRNEGVVEFESSSDMKKALDKLDNA 173
++ + + + GEV + V+F D +KA+ L+N
Sbjct: 32 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR 91
Query: 174 ELNGRRIR 181
NG+ I
Sbjct: 92 WFNGQPIH 99
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 42.5 bits (99), Expect = 2e-06
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 4/76 (5%)
Query: 108 PPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKAL 167
PP + L + NL + L Q + VEF + A
Sbjct: 6 PPNQ---ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAK 62
Query: 168 DKLDNAEL-NGRRIRL 182
+ L ++ +++
Sbjct: 63 EALQGFKITPTHAMKI 78
Score = 39.8 bits (92), Expect = 2e-05
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIR---DVILKNGFGFVEFEDYRDADDAVYELNGK 60
+++ LP E L + + V ++ FVEF ++ A L G
Sbjct: 9 QILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGF 68
Query: 61 SLL-GERVTVEIAK 73
+ + + AK
Sbjct: 69 KITPTHAMKITFAK 82
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 43.3 bits (101), Expect = 2e-06
Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVY 55
+I +P+ + + D+ +F++G + + G V+F++ DA +
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE- 67
Query: 56 ELNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYR 90
L+ K L G V + D +
Sbjct: 68 RLHRKKLNGREAFVHVVTLEDMREIEKNPPAQGKS 102
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 43.2 bits (101), Expect = 2e-06
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--KNGFGFVEFEDYRDADDAVYELN 58
V V++ GL V E DL + ++ +G I V++ VEFE+ A + V
Sbjct: 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAA 72
Query: 59 GKSLLGERVTVEIAKGIDRSQER 81
+ + R
Sbjct: 73 DVPVYIAGQQAFFNYSTSKRITR 95
Score = 33.2 bits (75), Expect = 0.007
Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 6/104 (5%)
Query: 99 GHDRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFE 158
G + + V L V DL + + + G +CY R +VEFE
Sbjct: 4 GSSGSHHKVSVSP---VVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQ-ALVEFE 59
Query: 159 SSSDMKKALDKLDN--AELNGRRIRLIEDKPRGGGRGRSRSSSS 200
+ K+ + + + G++ + R + SS
Sbjct: 60 NIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITRPGNSGPSS 103
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.4 bits (99), Expect = 5e-06
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRIRDVIL--------KNGFGFVEFEDYRDADDAVYE 56
++G LPY V E +++F +G + GFG+ EFED A+
Sbjct: 17 TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-S 75
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRG 85
LN +SL +R+ V++A G
Sbjct: 76 LNEESLGNKRIRVDVADQAQDKDSGPSSG 104
Score = 40.9 bits (95), Expect = 1e-05
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 109 PTRSDHRLIVENLSSRVSWQDLKDFMRQVGE-----VCYADAHKRHRNEGVVEFESSSDM 163
P + + NL V+ + +K+F R + +R + G EFE +
Sbjct: 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSL 70
Query: 164 KKALDKLDNAELNGRRIRLIEDKPRGGGRGRSRS 197
AL L+ L +RIR+ S
Sbjct: 71 LSAL-SLNEESLGNKRIRVDVADQAQDKDSGPSS 103
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 41.3 bits (96), Expect = 8e-06
Identities = 15/107 (14%), Positives = 30/107 (28%), Gaps = 9/107 (8%)
Query: 110 TRSDHRLIVENLSSRV-SWQDLKDFMRQVGEVCYADAH---KRHRNEGVVEFESSSDMKK 165
+ LI + V S + + + D + + F +
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAAD 61
Query: 166 ALDKLDNAELNGRRIRLIEDKPRGGGRGRSRSSSSRSRSKSRSRSRS 212
A +L E G+ ++L + SS + +S S
Sbjct: 62 ARLRLHKTEFLGKEMKLYFAQTL-----HIGSSHLAPPNPDKSGPSS 103
Score = 40.5 bits (94), Expect = 2e-05
Identities = 12/98 (12%), Positives = 26/98 (26%), Gaps = 8/98 (8%)
Query: 4 TKVYIGGLPYGVRE-----RDLEKFVKGYGRIRDVILKN--GFGFVEFEDYRDADDAVYE 56
+ + V E + Y + + F + A DA
Sbjct: 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLR 65
Query: 57 LNGKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPP 94
L+ LG+ + + A+ + ++ P
Sbjct: 66 LHKTEFLGKEMKLYFAQTLHIGSSH-LAPPNPDKSGPS 102
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 40.3 bits (93), Expect = 2e-05
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 107 GPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEV----CYADAHKRHRNEGVVEFESSSD 162
G + + L + NL+ S +LK + ++ +R G V+FES+ D
Sbjct: 7 GSESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAED 66
Query: 163 MKKALDKLDNAELNGRRIRLIEDKPR 188
++KAL+ L ++ G I+L + K R
Sbjct: 67 LEKALE-LTGLKVFGNEIKLEKPKGR 91
Score = 38.0 bits (87), Expect = 1e-04
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL-------KNGFGFVEFEDYRDADDAVY 55
++IG L +L+ + D+ + FG+V+FE D + A+
Sbjct: 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE 72
Query: 56 ELNGKSLLGERVTVEIAKG 74
L G + G + +E KG
Sbjct: 73 -LTGLKVFGNEIKLEKPKG 90
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 40.7 bits (94), Expect = 2e-05
Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 1/107 (0%)
Query: 107 GPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKA 166
G RS ++ +NL + ++++ + G + +VEF + +KA
Sbjct: 4 GSSGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVL-LPEGGITAIVEFLEPLEARKA 62
Query: 167 LDKLDNAELNGRRIRLIEDKPRGGGRGRSRSSSSRSRSKSRSRSRSS 213
L ++ + + L G + S + ++ S S
Sbjct: 63 FRHLAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAESGPS 109
Score = 39.2 bits (90), Expect = 6e-05
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 2/83 (2%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDVILK--NGFGFVEFEDYRDADDAVYELNGKS 61
T + LP G ++++ +G + V+L VEF + +A A L
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSK 70
Query: 62 LLGERVTVEIAKGIDRSQERGRR 84
+ +E A ++
Sbjct: 71 FHHVPLYLEWAPIGVFGAAPQKK 93
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 39.0 bits (90), Expect = 7e-05
Identities = 13/99 (13%), Positives = 33/99 (33%)
Query: 116 LIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNEGVVEFESSSDMKKALDKLDNAEL 175
+L + +DL GE+ + D + + ++ E + + +N L
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNL 73
Query: 176 NGRRIRLIEDKPRGGGRGRSRSSSSRSRSKSRSRSRSSK 214
R + + G + + +S ++ +S
Sbjct: 74 QLRNKEVTWEVLEGEVEKEALKKIIEDQQESLNKWKSKG 112
Score = 37.9 bits (87), Expect = 2e-04
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 4 TKVYIGGLPYGVRERDLEKFVKGYGRIRDV--ILKNGFGFVEFED-YRDADDAVYELNGK 60
+ G L DL +G I+ + + G + F++ ++A + N
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNG 71
Query: 61 SLLGERVTVEIAKGIDRSQERGRR 84
+L V ++ +
Sbjct: 72 NLQLRNKEVTWEVLEGEVEKEALK 95
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.3 bits (88), Expect = 9e-05
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 5 KVYIGGLPYGVRERDLEKFVKGYGRI--RDVILKNGFGFVEFEDYRDADDAV--YELNGK 60
++I LP V E ++ +G++ ++ F+E A V Y
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP 69
Query: 61 SLLGERVTVEIAK 73
L + + ++ +
Sbjct: 70 HLRNQPIYIQYSN 82
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 37.3 bits (86), Expect = 2e-04
Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 107 GPPTR-------SDHRLIVENLSSRVSWQDLKDFMRQVGEVCYADAHKRHRNE------- 152
G PT ++++ +D++D + G V + +
Sbjct: 1 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGK 60
Query: 153 GVVEFESSSDMKKALDKLDNAELNGRRIR 181
VEF S D +KA+ L + R +
Sbjct: 61 IFVEFTSVFDCQKAMQGLTGRKFANRVVV 89
Score = 36.5 bits (84), Expect = 5e-04
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 1 MVGTKVYIGGLPYGVRERDLEKFVKGYGRIRDVIL----------KNGFGFVEFEDYRDA 50
MV + + Y D+ YG ++ + + G FVEF D
Sbjct: 12 MVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 71
Query: 51 DDAVYELNGKSLLGERVTVEIA 72
A+ L G+ V +
Sbjct: 72 QKAMQGLTGRKFANRVVVTKYC 93
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 36.4 bits (83), Expect = 5e-04
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 101 DRDDRYGPPTRSDHRLIVENLSSRVSWQDLKDFMRQVGEVCYA-----DAHKRHRNEGVV 155
+ R P + + ++ L + + DF +++ V + + + EG V
Sbjct: 6 QKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFV 65
Query: 156 EFESSSDMKKALDKLDNAELNGRRIRLIEDKPR 188
EF + +D K AL + R I++ +
Sbjct: 66 EFRNEADYKAAL-CRHKQYMGNRFIQVHPITKK 97
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 36.0 bits (82), Expect = 8e-04
Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 3 GTKVYIGGLPYGVRERDLEKFVKGYGRIRDVI--------LKNGFGFVEFEDYRDADDAV 54
V + GLP+G + ++ +F G + + + G FV+F A+ A+
Sbjct: 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKAL 74
Query: 55 YELNGKSLLGERVTVEIAKGIDRSQERGRRG 85
+ + + + + + + G
Sbjct: 75 K-KHKERIGHRYIEIFKSSRAEVRTSGPSSG 104
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 34.8 bits (79), Expect = 0.001
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 14/79 (17%)
Query: 5 KVYIGGLPYGVRERDLEK---FVKGYGRIRDVILKN-----------GFGFVEFEDYRDA 50
V++ GL + + ++ K + +G+I V++ N +V + DA
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 51 DDAVYELNGKSLLGERVTV 69
A+ +N + G +
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
Score = 32.9 bits (74), Expect = 0.007
Identities = 12/75 (16%), Positives = 31/75 (41%), Gaps = 11/75 (14%)
Query: 118 VENLSSRVSWQDL---KDFMRQVGEVCYADAHK--------RHRNEGVVEFESSSDMKKA 166
V LS R++ ++ ++ + G++ + V + S D +A
Sbjct: 13 VVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRA 72
Query: 167 LDKLDNAELNGRRIR 181
+ ++N ++GR ++
Sbjct: 73 IQCVNNVVVDGRTLK 87
>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus
[TaxId: 274]}
Length = 385
Score = 27.9 bits (61), Expect = 1.3
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 162 DMKKALDKLDNAELNGRRIRLIED 185
+++A L+ A G+RIR+ D
Sbjct: 9 GLREAAALLEEALRQGKRIRVHGD 32
>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId:
9606]}
Length = 160
Score = 27.3 bits (60), Expect = 1.4
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 195 SRSSSSRSRSKSRSRSRSSKSRSPRSRSKSGSPRKSKSKAKSVSRSPSPSKT 246
+ + + + + + +S RSP + S S + S + SR+ ++T
Sbjct: 108 PAKAKANAVRRVMATTSASLKRSPSASSLSSMSSVASSVSSRPSRTGLLTET 159
>d1c9oa_ b.40.4.5 (A:) Major cold shock protein {Bacillus
caldolyticus [TaxId: 1394]}
Length = 66
Score = 25.9 bits (57), Expect = 1.4
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 36 KNGFGFVEFEDYRD---ADDAVYELNGKSLL-GERVTVEIAKG 74
+ G+GF+E E D A+ K+L G+ V+ EI +G
Sbjct: 12 EKGYGFIEVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQG 54
>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
N-terminal (G) domain {Archaeon Pyrococcus abyssi
[TaxId: 29292]}
Length = 195
Score = 26.5 bits (57), Expect = 2.9
Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 3/83 (3%)
Query: 59 GKSLLGERVTVEIAKGIDRSQERGRRGYGSYRAPPPRRGWGHDRDDRYGPPTRSDHRLIV 118
GK+ L + +T RG + RR RY +
Sbjct: 17 GKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC---PNCGRYSTSPVCPYCGHE 73
Query: 119 ENLSSRVSWQDLKDFMRQVGEVC 141
RVS+ D + +
Sbjct: 74 TEFVRRVSFIDAPGHEALMTTML 96
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 26.0 bits (56), Expect = 4.4
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 2 VGTKVYIGGLPYGVRERDLEKFVKGY-GRIRDVILKNGFGFVEFEDYRDA 50
V++GG P G+ + L + G IR + L G G ++ A
Sbjct: 124 TNDPVFVGGFPGGLNQFGL-TTNIRFRGCIRSLKLTKGTGKPLEVNFAKA 172
>d2ix0a2 b.40.4.5 (A:4-82) Exoribonuclease 2, RNB {Escherichia
coli [TaxId: 562]}
Length = 79
Score = 24.7 bits (54), Expect = 4.9
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 28 GRIRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77
G ++ + GFGF+E + + ++ + G+R+ I +R
Sbjct: 21 GVVK--ATEKGFGFLEVDAQKSYFIPPPQMKK-VMHGDRIIAVIHSEKER 67
>d2f4ia1 b.40.11.1 (A:39-214) Hypothetical protein TM0957
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 24.9 bits (54), Expect = 8.0
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 30 IRDVILKNGFGFVEFEDYRDADDAVYELNGKSLLGERVTVEIAKGIDR 77
I + N G + ED+ D + L L + V E+ +
Sbjct: 91 IFGNGIVNATGIAKMEDFDRIID--FNLTATE-LNKIVKEEVVNSFLK 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 950,003
Number of extensions: 45535
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 298
Number of HSP's successfully gapped: 180
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.5 bits)