BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10322
(261 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9IB83|PSB1B_CARAU Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B
PE=2 SV=1
Length = 237
Score = 217 bits (553), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 156/261 (59%), Gaps = 55/261 (21%)
Query: 12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPT---- 67
P++H FSPY+ NGGT +AVAG D+A++ASDTRLS GY+I++R+ K Y+ T
Sbjct: 21 PVEHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKC-----YKLTDTTV 75
Query: 68 -------YNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIA 120
+ L + I +MY H +NK M++ ++A M+S ++YG+RFFPYY II
Sbjct: 76 IGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIG 135
Query: 121 GLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIR 180
GLD EG+G VYS+DP+G +R ++AGGS+ A+LQ LLDNQ+
Sbjct: 136 GLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQI------------------ 177
Query: 181 THDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG 240
GF+N ENV++ P+ EKA+ +VKD F +AAERD+YTGD
Sbjct: 178 ---------------------GFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDA 216
Query: 241 VHLCAITKDGIKEYNFPLRKD 261
+ +C ITK+GI+E PLRKD
Sbjct: 217 LKICIITKEGIREEIVPLRKD 237
>sp|Q9IB84|PSB1A_CARAU Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A
PE=2 SV=1
Length = 238
Score = 217 bits (553), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 156/261 (59%), Gaps = 55/261 (21%)
Query: 12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPT---- 67
P++H FSPY+ NGGT +AVAG D+A++ASDTRLS GY+I++R+ K Y+ T
Sbjct: 22 PVEHKFSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKC-----YKLTDTTV 76
Query: 68 -------YNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIA 120
+ L + I +MY H +NK M++ ++A M+S ++YG+RFFPYY II
Sbjct: 77 IGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIG 136
Query: 121 GLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIR 180
GLD EG+G VYS+DP+G +R ++AGGS+ A+LQ LLDNQ+
Sbjct: 137 GLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQI------------------ 178
Query: 181 THDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG 240
GF+N ENV++ P+ EKA+ +VKD F +AAERD+YTGD
Sbjct: 179 ---------------------GFKNMENVEQVPLSQEKAVQLVKDVFISAAERDVYTGDA 217
Query: 241 VHLCAITKDGIKEYNFPLRKD 261
+ +C ITK+GI+E PLRKD
Sbjct: 218 LKICIITKEGIREEIVPLRKD 238
>sp|P18421|PSB1_RAT Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1
SV=3
Length = 240
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 155/256 (60%), Gaps = 45/256 (17%)
Query: 12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
P+Q FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+ K + D +
Sbjct: 24 PVQMRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 83
Query: 69 ---NFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
+ L + I +MY H +NK M+T ++A M+S ++Y +RFFPYY II GLD E
Sbjct: 84 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEE 143
Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
GKG VYS+DP+G +R +F+AGGS+ A+LQ LLDNQV
Sbjct: 144 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 180
Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
GF+N +NV+ P+ L++A+ +VKD F +AAERD+YTGD + +C
Sbjct: 181 ----------------GFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICI 224
Query: 246 ITKDGIKEYNFPLRKD 261
+TK+GI+E PLRKD
Sbjct: 225 VTKEGIREETVPLRKD 240
>sp|O09061|PSB1_MOUSE Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1
Length = 240
Score = 214 bits (546), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 155/256 (60%), Gaps = 45/256 (17%)
Query: 12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
P+Q FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+ K + D +
Sbjct: 24 PVQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 83
Query: 69 ---NFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
+ L + I +MY H +NK M+T ++A M+S ++Y +RFFPYY II GLD E
Sbjct: 84 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 143
Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
GKG VYS+DP+G +R +F+AGGS+ A+LQ LLDNQV
Sbjct: 144 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 180
Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
GF+N +NV+ P+ L++A+ +VKD F +AAERD+YTGD + +C
Sbjct: 181 ----------------GFKNMQNVEHVPLTLDRAMRLVKDVFISAAERDVYTGDALRICI 224
Query: 246 ITKDGIKEYNFPLRKD 261
+TK+GI+E PLRKD
Sbjct: 225 VTKEGIREETVPLRKD 240
>sp|Q2TBX6|PSB1_BOVIN Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1
Length = 241
Score = 211 bits (537), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 154/256 (60%), Gaps = 45/256 (17%)
Query: 12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
P+Q FSPY+ NGGT +A+AG D++I+ASDTRLS G++I+TR+ K + D +
Sbjct: 25 PLQLRFSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 84
Query: 69 ---NFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
+ L + I +MY H +NK M+T ++A M+S ++Y +RFFPYY II GLD E
Sbjct: 85 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 144
Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
GKG VYS+DP+G +R +F+AGGS+ A+LQ LLDNQV
Sbjct: 145 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 181
Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
GF+N +NV+ P+ L++A+ +VKD F +AAERD+YTGD + +C
Sbjct: 182 ----------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALKVCI 225
Query: 246 ITKDGIKEYNFPLRKD 261
+TK+GI+ PLRKD
Sbjct: 226 VTKEGIRGETVPLRKD 241
>sp|P20618|PSB1_HUMAN Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2
Length = 241
Score = 211 bits (536), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/256 (42%), Positives = 153/256 (59%), Gaps = 45/256 (17%)
Query: 12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY 68
P+Q FSPY NGGT +A+AG D+AI+ASDTRLS G++I+TR+ K + D +
Sbjct: 25 PLQLRFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSG 84
Query: 69 ---NFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE 125
+ L + I +MY H +NK M+T ++A M+S ++Y +RFFPYY II GLD E
Sbjct: 85 FHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEE 144
Query: 126 GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLA 185
GKG VYS+DP+G +R +F+AGGS+ A+LQ LLDNQV
Sbjct: 145 GKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV----------------------- 181
Query: 186 LTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245
GF+N +NV+ P+ L++A+ +VKD F +AAERD+YTGD + +C
Sbjct: 182 ----------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICI 225
Query: 246 ITKDGIKEYNFPLRKD 261
+TK+GI+E LRKD
Sbjct: 226 VTKEGIREETVSLRKD 241
>sp|P40304|PSB1_DROME Proteasome subunit beta type-1 OS=Drosophila melanogaster GN=Pros26
PE=2 SV=2
Length = 235
Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/254 (45%), Positives = 151/254 (59%), Gaps = 49/254 (19%)
Query: 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRP--------TY 68
FSPY NGG+ VA+AG D+A+IA+DTRLS+GYNI++R QSKLF P +
Sbjct: 22 FSPYESNGGSIVAIAGDDFAVIAADTRLSSGYNIHSRTQSKLFK---LSPQTVLGSAGCW 78
Query: 69 NFLMIFTITI-LPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGK 127
+ T +I + Q Y H H + M+T ++A+M+SI MY +RFFPYY S I+AG+D EGK
Sbjct: 79 ADTLSLTGSIKVRMQSYEHTHLRTMTTEAVAQMLSIAMYNRRFFPYYVSNILAGIDNEGK 138
Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALT 187
G VYSYDPIGH E+A +RAGG++G LLQ +LDNQ+G K M
Sbjct: 139 GVVYSYDPIGHCEKATYRAGGTAGTLLQPVLDNQIG-----HKNM--------------- 178
Query: 188 REINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247
N E+ DK + E+A+SV D F +AAERDIYTGD V + IT
Sbjct: 179 -----------------NLEDADKIKLTKERAVSVASDTFISAAERDIYTGDSVLINIIT 221
Query: 248 KDGIKEYNFPLRKD 261
KDGI+ LR+D
Sbjct: 222 KDGIEVRTLTLRQD 235
>sp|P23724|PSB6_YEAST Proteasome subunit beta type-6 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PRE7 PE=1 SV=1
Length = 241
Score = 164 bits (416), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 96/258 (37%), Positives = 140/258 (54%), Gaps = 38/258 (14%)
Query: 11 TPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFD--HYYYRPTY 68
TPI+H F+PY DNGGT + +AG D+A++A DTR Y+I +R + K+FD
Sbjct: 15 TPIEHQFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSAN 74
Query: 69 NFLMIFTITILPFQ----MYLHEHN-KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLD 123
F + F+ Y +HN K +S S A+ I ++YGKRFFPYY TIIAGLD
Sbjct: 75 GFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLD 134
Query: 124 PEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHD 183
+GKG VYS+DP+G ER RAGG++ +L+ LDNQV Q + G
Sbjct: 135 EDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNF----KNQYEPGTNG----- 185
Query: 184 LALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL 243
+ + + LS +E+ I +V+D+FT+A ER I GDG+ +
Sbjct: 186 -KVKKPLKYLS---------------------VEEVIKLVRDSFTSATERHIQVGDGLEI 223
Query: 244 CAITKDGIKEYNFPLRKD 261
+TKDG+++ + L++D
Sbjct: 224 LIVTKDGVRKEFYELKRD 241
>sp|O82531|PSB1_PETHY Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1
Length = 223
Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 98/262 (37%), Positives = 136/262 (51%), Gaps = 51/262 (19%)
Query: 11 TPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNF 70
T Q ++SPY +NGGT VAVAG DY +IA+DTR+S GYNI TR+ SK+ +
Sbjct: 2 TKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKII-----KLADKC 56
Query: 71 LMI---FTITILPFQ--------MYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTII 119
+M F + Q +Y H+HNK MS ++ +++S +Y KRFFPYY+ ++
Sbjct: 57 VMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVL 116
Query: 120 AGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGI 179
GLD EGKGCV++YD +G ER + + GS L+ LDNQ
Sbjct: 117 GGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQ------------------ 158
Query: 180 RTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD 239
L S +LL Q+ V TP+ +AI +VK F +A ERDIYTGD
Sbjct: 159 -------------LKSPSPLLL--PAQDAV--TPLSEAEAIDLVKTCFASATERDIYTGD 201
Query: 240 GVHLCAITKDGIKEYNFPLRKD 261
+ + + GI+ LRKD
Sbjct: 202 RLEIVILNASGIRREEMELRKD 223
>sp|O64464|PSB1_ORYSJ Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica
GN=PBF1 PE=2 SV=1
Length = 221
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 130/248 (52%), Gaps = 41/248 (16%)
Query: 20 YSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITIL 79
Y +NGGT VA+AG DY ++A+DTRLS GYNI TR+ SK+ + + I L
Sbjct: 9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKAL 68
Query: 80 PFQM------YLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
+ Y H+HNK MS ++A+++S +Y KRFFPYY ++ GLD EGKGCV++Y
Sbjct: 69 HKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTY 128
Query: 134 DPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINAL 193
D +G ER + A G+ AL+ +LDNQ L
Sbjct: 129 DAVGSYERTGYSAQGTGSALIMPVLDNQ-------------------------------L 157
Query: 194 SSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
S +LL R+ TP+ +A+ +VKD F +A ERDIYTGD + + I K G K
Sbjct: 158 KSPSPLLLPARDA----VTPLSETEAVDLVKDVFASATERDIYTGDKLEIVVINKAGTKR 213
Query: 254 YNFPLRKD 261
LRKD
Sbjct: 214 EYIDLRKD 221
>sp|P42742|PSB1_ARATH Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1
SV=2
Length = 223
Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 134/257 (52%), Gaps = 46/257 (17%)
Query: 14 QH-HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM 72
QH ++SPY +NGGT VA+AG DY +IA+DTR+S GY+I +R+ SK+ H
Sbjct: 4 QHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKI--HKLADRAVLSSS 61
Query: 73 IFTITILPFQ--------MYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDP 124
F + Q +Y H+HNK MS ++A+++S +Y KRFFPYY ++ GLD
Sbjct: 62 GFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDE 121
Query: 125 EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDL 184
EGKGCV++YD +G ER + A GS L+ LDNQ
Sbjct: 122 EGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQ----------------------- 158
Query: 185 ALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244
L S +LL ++ TP+ +A+ +VK F +A ERDIYTGD + +
Sbjct: 159 --------LKSPSPLLLPKQDSN----TPLSEAEAVDLVKTVFASATERDIYTGDKLEIM 206
Query: 245 AITKDGIKEYNFPLRKD 261
+ DGIK LRKD
Sbjct: 207 ILKADGIKTELMDLRKD 223
>sp|Q9UQY2|PSB6_SCHPO Probable proteasome subunit beta type-6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pam1 PE=3 SV=1
Length = 225
Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 129/254 (50%), Gaps = 37/254 (14%)
Query: 14 QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT--- 67
Q F PY NGGTTVA+AG +AI+A DTR GYNI TR Q ++ D +
Sbjct: 3 QSQFDPYVQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFE 62
Query: 68 YNFLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGK 127
+ L + +Y H + MS S A M+ ++YGKRFFPYY T +AG+D EGK
Sbjct: 63 ADALALVKRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGK 122
Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALT 187
G +YS+DP+G ER RAGGS+ + LDNQV + H+
Sbjct: 123 GEIYSFDPVGSYEREWCRAGGSAANFITPFLDNQVNL--HNQ------------------ 162
Query: 188 REINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247
+ G +E + + LE+A+ + DAFT+A ER I GD V + IT
Sbjct: 163 -----------YVPGSHGKERKPRRLLKLEEAMKITTDAFTSAGERHIEVGDSVLVKIIT 211
Query: 248 KDGIKEYNFPLRKD 261
K+G++ PL+KD
Sbjct: 212 KEGVETRIIPLKKD 225
>sp|Q9U794|PSB1_TRYBB Proteasome subunit beta type-1 OS=Trypanosoma brucei brucei PE=2
SV=1
Length = 258
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 136/257 (52%), Gaps = 51/257 (19%)
Query: 15 HHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTR-EQSKLF---DHYYYRPT-YN 69
H+SPY+DNGGT A+AG +Y ++ +DTRL+ + I+TR + SKLF D + +
Sbjct: 43 QHWSPYTDNGGTIAAIAGSNYVVLGADTRLNGDFCIHTRSDTSKLFKLTDRIFLASSGMQ 102
Query: 70 FLMIFTITILPFQMYLHEHN---KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG 126
+ +L +++ +++N KV ST ++AK+ S M+Y +RFFPYYT +I G+D +G
Sbjct: 103 ADRLQLQQMLKYRIQWYQYNNGGKVPSTKAIAKLTSTMLYQRRFFPYYTFNMIVGIDEKG 162
Query: 127 KGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLAL 186
G YSYDP+G TE + GS+ + ++ LL D L
Sbjct: 163 AGVCYSYDPVGSTEPFRYGTCGSASSFVEPLL------------------------DCLL 198
Query: 187 TREINALSSKLTILLGFRNQENVDKTPVPL--EKAISVVKDAFTAAAERDIYTGDGVHLC 244
TR Q V + P L E+A+ ++K+AFT AAERDI+TGD V
Sbjct: 199 TR-----------------QHMVTQAPADLTMEEALGMLKNAFTGAAERDIFTGDTVCFH 241
Query: 245 AITKDGIKEYNFPLRKD 261
IT DG+ F LRKD
Sbjct: 242 IITADGVGTEMFELRKD 258
>sp|Q86A21|PSB1_DICDI Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1
PE=3 SV=1
Length = 236
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/261 (34%), Positives = 131/261 (50%), Gaps = 48/261 (18%)
Query: 10 ETPIQH-HFSPYSDNGGTTVAVAGPDYAIIASDTRLS-AGYNIYTREQSKLFD-HYYYRP 66
+ PI H F Y DNGGT +AVAG DY +IA DTR+S GY I TR+ +K+F
Sbjct: 15 QQPISHGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVL 74
Query: 67 TYNFLMIFTITILP-----FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAG 121
+ + TI + + + EH K MST ++A+ +S +Y KRFFPYYT ++AG
Sbjct: 75 ATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAG 134
Query: 122 LDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRT 181
+D +G+G +++YD +G ER + + GS L+ LLDNQV
Sbjct: 135 VDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKF---------------- 178
Query: 182 HDLALTREINALSSKLTILLGFRNQENVD-KTPVPLEKAISVVKDAFTAAAERDIYTGDG 240
NQ+ V+ V E+ +S VKD+ T+A ERDIYTGD
Sbjct: 179 -----------------------NQQIVEGNKDVSCEQVVSFVKDSITSAGERDIYTGDF 215
Query: 241 VHLCAITKDGIKEYNFPLRKD 261
+ + K+G+ F L+ D
Sbjct: 216 ADIVVVDKNGVHWEKFELKLD 236
>sp|P34286|PSB1_CAEEL Proteasome subunit beta type-1 OS=Caenorhabditis elegans GN=pbs-6
PE=1 SV=2
Length = 258
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 83/257 (32%), Positives = 129/257 (50%), Gaps = 48/257 (18%)
Query: 14 QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAG-YNIYTREQSKL--FDHYYYRPTYNF 70
+ ++PYS GG+T A++G ++AI+ASDTR++ NI TR+ K+ + T F
Sbjct: 41 RQRWNPYSMEGGSTCAISGENFAIVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGF 100
Query: 71 ----LMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG 126
L + + Y ++ MS A+++S +Y +RFFPYYT I+AG+D G
Sbjct: 101 YGDVLQLKKVLQSRLHKYRFDYRSDMSVDLCAELLSRNLYYRRFFPYYTGAILAGIDEHG 160
Query: 127 KGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLAL 186
KG V+SYDPIG ER + A G++ ++ LD Q+G + S
Sbjct: 161 KGAVFSYDPIGCIERLGYSASGAAEPMIIPFLDCQIGHVTLS------------------ 202
Query: 187 TREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI 246
E ++ + L++AIS++KD+F AAER+I TGD +HL I
Sbjct: 203 --------------------EGYERPELTLDRAISLMKDSFRGAAEREISTGDKIHL-VI 241
Query: 247 TKDG--IKEYNFPLRKD 261
+ G + PLR+D
Sbjct: 242 AEAGKPVVVKFLPLRED 258
>sp|Q8SRH6|PSB6_ENCCU Probable proteasome subunit beta type-6 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=PRE7 PE=1 SV=1
Length = 290
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 121/257 (47%), Gaps = 55/257 (21%)
Query: 14 QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMI 73
+ F PY DN GTT+ + D+ ++A DTR S+ I +RE SK+F +FL+
Sbjct: 80 KERFDPYEDNSGTTICLKQGDFIVVAGDTRHSSSMVINSREMSKIFQ------VGDFLLT 133
Query: 74 FT---------ITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDP 124
T + +++ +E + ++ S A ++S ++Y KRFFPYY+ +++G +
Sbjct: 134 GTGFYADTHEVYVKMVYEIRQYEVDDSINIHSAANLLSKILYSKRFFPYYSFCVLSGFE- 192
Query: 125 EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDL 184
+GK VYSYDPIG GS +++Q LLD+
Sbjct: 193 KGKPYVYSYDPIGSFGSVTCVCSGSGRSMIQPLLDS------------------------ 228
Query: 185 ALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244
+ +N N ++T + E I +V AF +AAERD+ T D + +C
Sbjct: 229 ---------------FIDKKNWNNAEETQLSQEDCIRLVVKAFNSAAERDVKTKDNLEVC 273
Query: 245 AITKDGIKEYNFPLRKD 261
+ ++ + FPLR+D
Sbjct: 274 VMRENQVMRETFPLRRD 290
>sp|B6YSW2|PSB1_THEON Proteasome subunit beta 1 OS=Thermococcus onnurineus (strain NA1)
GN=psmB1 PE=3 SV=1
Length = 203
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 101/239 (42%), Gaps = 56/239 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIFTITIL 79
G TTV + D ++A+D R S G + ++E +K+F DH + I ++ L
Sbjct: 6 KGTTTVGIVCKDGVVLAADRRASLGNMVLSKEVTKVFQIDDHLALAGAGSVGDILSLVRL 65
Query: 80 ---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
++Y + + +S +LA + S +++G RF PY+ +IAG D K +YS D
Sbjct: 66 LRAEVKLYRAKVGREISVKALATLTSNILHGSRFMPYFGWFLIAGYDE--KPALYSLDMA 123
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G F A GS L A+L++
Sbjct: 124 GGVTEDKFTAAGSGMELAFAVLED------------------------------------ 147
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
G+++ NV E+ + + A A RD++TGDG+ L +T++G +E N
Sbjct: 148 -----GYKDDINV-------EEGVKLALKAIKIATRRDVFTGDGITLVTVTEEGYRELN 194
>sp|C5A7L1|PSB1_THEGJ Proteasome subunit beta 1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmB1 PE=3 SV=1
Length = 201
Score = 71.2 bits (173), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 56/248 (22%)
Query: 18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRP---TYNFL 71
SP + G TTV V D ++A+D R + G + ++E +K+F DH + L
Sbjct: 4 SPSAMKGTTTVGVVCRDGVVLAADRRATLGNMVTSKEVTKVFQIDDHLAIAGAGLVGDIL 63
Query: 72 MIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVY 131
+ + ++Y + + MS +LA ++S +++G R PY+ +I G D + + +Y
Sbjct: 64 SLVRLLRAEAKLYRAKVGREMSVKALATLVSNVLHGSRHLPYFAWFLIGGYDVKPR--LY 121
Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
S D G F A GS ALL
Sbjct: 122 SIDAAGGVTEERFIAAGSGMEFALALL--------------------------------- 148
Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
+EN + L++ I + A AA RD+YTG+GV + AITK+G
Sbjct: 149 --------------EENFSD-GMGLDEGIDLAVRAVKAAIRRDVYTGEGVTVVAITKEGY 193
Query: 252 KEYNFPLR 259
+E L+
Sbjct: 194 RELEPVLK 201
>sp|A1RX71|PSB2_THEPD Proteasome subunit beta 2 OS=Thermofilum pendens (strain Hrk 5)
GN=psmB2 PE=3 SV=1
Length = 204
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 106/242 (43%), Gaps = 55/242 (22%)
Query: 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIFTIT-ILP 80
GTTV + D ++A++ R+S G + ++ K++ D + T+ I+
Sbjct: 6 GTTVGIRVSDGVVLAAEKRVSYGLYLMSKSGKKVYRILDKMGMASAGLMADMQTLARIVE 65
Query: 81 FQMYLHEHNKVMS--TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGH 138
+M L+E + +S ++AK++S ++Y +R FPYY ++ GLD EG +YS DPIG
Sbjct: 66 AEMRLYELDSNISPKVWTVAKLLSYILYERRLFPYYAEIVVGGLDEEGS-HLYSLDPIGA 124
Query: 139 TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLT 198
++ A GS L + I++ + K+
Sbjct: 125 IIEDDYVALGSGTQL-------AISIVESNYKK--------------------------- 150
Query: 199 ILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFPL 258
+ L++A+S+ + AA +RD +GDGV + I K G E +PL
Sbjct: 151 --------------DMSLDEALSLALKSVYAAMKRDAASGDGVDVLVIGKSGTLEKTYPL 196
Query: 259 RK 260
+
Sbjct: 197 SE 198
>sp|Q8ZST5|PSB2_PYRAE Proteasome subunit beta 2 OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=psmB2 PE=3 SV=1
Length = 203
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 55/236 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFLM----IFTIT 77
G T V + D ++A++ R+S G+ + K+F D + + + I
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFVIDDKLAIASAGIIADMQTLAKIL 67
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
L + Y E + ST S+A+++S++M+ +RF P++ ++ G+D EG + DP+G
Sbjct: 68 KLNAKAYELEMKRKPSTHSMARLLSVIMFSRRFMPFFAEVLVGGIDEEGPHLIV-MDPLG 126
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
N+ A G+ L A+LD
Sbjct: 127 SLIEDNYAALGTGAKLAVAVLDT------------------------------------- 149
Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
G+R + +E+A + A AA ERD +G G+ L + K+G +E
Sbjct: 150 ----GYRPD-------ITVEEAKKLAVQALKAAIERDPVSGGGIDLAIVDKNGARE 194
>sp|O50110|PSB2_PYRHO Proteasome subunit beta 2 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 95/237 (40%), Gaps = 56/237 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIFTITIL 79
G TTV + D ++A+D R S G IY R +K+ +H + I + L
Sbjct: 9 KGTTTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
Query: 80 ---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
++Y + K MS +LA +++ +M G ++FPY ++ G D + K +YS D +
Sbjct: 69 LRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYFPYLAWFLVGGYDEKPK--LYSVDMV 126
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G + GS ++LD++
Sbjct: 127 GGITEDKYATAGSGMEFAYSILDSEY---------------------------------- 152
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
K + LE+ I + A A +RD+++GDG+ + ITK+G KE
Sbjct: 153 --------------KDNLTLEEGIKLAVKAINTAIKRDVFSGDGILVVTITKEGYKE 195
>sp|C7P6N4|PSB_METFA Proteasome subunit beta OS=Methanocaldococcus fervens (strain DSM
4213 / JCM 157852 / AG86) GN=psmB PE=3 SV=1
Length = 224
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 94/236 (39%), Gaps = 55/236 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTIT 77
G TTV + D I+A+D R S G + +E KL+ D Y + I +
Sbjct: 6 GTTTVGLICDDAVILATDKRASMGNLVADKEAKKLYKIDDYIALTIAGSVGDAQAIVRLL 65
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI- 136
++Y K +S + A ++S +++ R+FP+ T II G D ++S DP+
Sbjct: 66 TAEAKLYKMRTGKNISPLACATLLSNILHSNRYFPFLTQLIIGGYDLLEGAKLFSLDPLG 125
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G E F A GS + +L+
Sbjct: 126 GMNEEKTFTATGSGSPIAYGVLEA------------------------------------ 149
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
G+ +P+E+ I + A +A ERD Y+G+G+ L ITK+G+K
Sbjct: 150 -----GYDRD-------MPVEEGIKLALKALKSAMERDTYSGNGISLAVITKEGVK 193
>sp|Q8U125|PSB2_PYRFU Proteasome subunit beta 2 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmB2 PE=3 SV=1
Length = 206
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 100/237 (42%), Gaps = 56/237 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIFTITIL- 79
G TTV + + ++A+DTR S G IY + +K+ +H + I + L
Sbjct: 10 GTTTVGLVCKEGVVLAADTRASLGNIIYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRLL 69
Query: 80 --PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
+Y K MS +LA +++ ++ G ++FPY ++ G D + + ++S D +G
Sbjct: 70 KAEANLYKSTVGKEMSVKALATLLANILNGSKYFPYLGWFLVGGYDEKPR--LFSVDMVG 127
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
N+ A GS ++LD++
Sbjct: 128 GITEDNYAAAGSGMEFAYSILDSE------------------------------------ 151
Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
+R + +V+ KAI+V A +RD++TGDG+ + ITKDG KEY
Sbjct: 152 -----YREEMSVNDGIKLAVKAINV-------AIKRDVFTGDGLLVVTITKDGYKEY 196
>sp|Q58634|PSB_METJA Proteasome subunit beta OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmB PE=1 SV=1
Length = 224
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 96/237 (40%), Gaps = 55/237 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTI 76
G TTV + D I+A+D R S G + +E KL+ D Y + I +
Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 64
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
I ++Y + + + A ++S +++ R FP+ T II G D ++S DP+
Sbjct: 65 LIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPL 124
Query: 137 -GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSS 195
G E F A GS + G+++ + SV GI+ LAL NAL S
Sbjct: 125 GGMNEEKTFTATGSGSPI-------AYGVLEAGYDRDMSVEEGIK---LAL----NALKS 170
Query: 196 KLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
A ERD ++G+G+ L ITKDG+K
Sbjct: 171 ----------------------------------AMERDTFSGNGISLAVITKDGVK 193
>sp|A2BN27|PSB2_HYPBU Proteasome subunit beta 2 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB2 PE=3 SV=1
Length = 212
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 99/243 (40%), Gaps = 56/243 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQ 82
G TTV + D+ ++A+D R +AGY + + K+ Y ++ +L
Sbjct: 14 KGTTTVGIVFRDFVVLAADRRATAGYFVAHKRTKKIIKITDYMAMTTAGLVADAQMLAEW 73
Query: 83 MYLHEH------NKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
+ H H + MS + A+ +SI+++ +F+PY ++ G D + + +Y+ D
Sbjct: 74 LANHTHYYEIVNKRRMSIHAAAQYLSIILHSAKFYPYIVQLLLGGYDTQPR--LYNIDWF 131
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G + A GS +G+I+ + S
Sbjct: 132 GSVTEEKYVATGSGSP-------TAIGVIE------------------------DQYSPN 160
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNF 256
L+ +E+A+ + K A ++ RD +TG+GV + I KD +EY+F
Sbjct: 161 LS-----------------MEEAVELAKRAVASSIRRDTFTGNGVDVVVIGKDFYREYSF 203
Query: 257 PLR 259
L+
Sbjct: 204 ELK 206
>sp|A4WMZ0|PSB2_PYRAR Proteasome subunit beta 2 OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=psmB2 PE=3 SV=1
Length = 203
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 95/242 (39%), Gaps = 55/242 (22%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFLM----IFTIT 77
G T V + D ++A++ R+S G+ + K+F D + + + I
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGRKVFVIDDKLAIASAGIIADMQSLARIV 67
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
+ + Y E K + S+AK++S++M+ +R+ P++ ++ G+D EG + DP+G
Sbjct: 68 KINAKAYELETRKKPTVRSMAKLLSVIMFSRRYMPFFAEVLVGGVDEEGSHLIV-MDPLG 126
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
N+ A G+ L ++LD
Sbjct: 127 SLIEDNYAALGTGAKLAISVLDT------------------------------------- 149
Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFP 257
G+R + L+ A + A AA ERD +G G+ L I + G KE
Sbjct: 150 ----GYRED-------ITLQDAKKLAVKALKAAIERDPVSGGGIDLVLIDQTGAKEEEVK 198
Query: 258 LR 259
++
Sbjct: 199 VQ 200
>sp|Q6LZD4|PSB_METMP Proteasome subunit beta OS=Methanococcus maripaludis (strain S2 /
LL) GN=psmB PE=3 SV=1
Length = 219
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 95/239 (39%), Gaps = 55/239 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTIT 77
G TTV + D ++A+D R + G I +E KL+ D Y + + +
Sbjct: 14 GTTTVGLLCNDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLIRLI 73
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
++Y M+ S +IS +++G R +P T I+ G D ++S DP+G
Sbjct: 74 SAEAKIYKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKLFSLDPVG 133
Query: 138 H-TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
E ++F A GS +L+++
Sbjct: 134 GINEESSFTATGSGSPTAYGVLESEY---------------------------------- 159
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
K+ + +EK + + A ++A +RD Y+G+G+ L I KDG+K Y+
Sbjct: 160 --------------KSDIAIEKGLLIAVKALSSAMQRDAYSGNGISLAHINKDGVKLYS 204
>sp|C9REN7|PSB_METVM Proteasome subunit beta OS=Methanocaldococcus vulcanius (strain
ATCC 700851 / DSM 12094 / M7) GN=psmB PE=3 SV=1
Length = 223
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 96/236 (40%), Gaps = 55/236 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTIT 77
G TTV + D I+A+D R S G I +E KL+ D Y + I
Sbjct: 6 GTTTVGLICDDAVILATDKRASMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRAL 65
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI- 136
I ++Y K +S + A ++S +++ R FP+ T II G D ++S DP+
Sbjct: 66 IAEARLYKMRTGKNISPRACATLLSNILHSSRMFPFLTQIIIGGYDLTDGPKLFSLDPLG 125
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G E F + GS + +L+ + +D R+++
Sbjct: 126 GMNEEKTFTSTGSGSPIAYGVLEAE--------------------YD----RDMS----- 156
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
+E+ + + A +A ERD Y+G+GV + ITK+G+K
Sbjct: 157 -------------------IEEGLKLALKALKSAMERDTYSGNGVSVAVITKEGVK 193
>sp|B1YDJ0|PSB2_PYRNV Proteasome subunit beta 2 OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=psmB2 PE=3 SV=1
Length = 203
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT---YNFLMIFTIT 77
G T V + D ++A++ R+S G+ + K+F D + + I
Sbjct: 8 GATAVGIRAKDGVVLAAEKRVSYGFYTLSTAGKKVFIVNDKLAIASAGIIADMQALAKIL 67
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
L + Y E K + ++AK++S++M+ +RF P+Y ++ G+D EG + DP+G
Sbjct: 68 KLNARSYELEVKKKPTVKAMAKLLSVVMFSRRFMPFYAEVLVGGVDEEGPHLIV-MDPLG 126
Query: 138 HTERANFRAGGSSGALLQALLD 159
N+ A G+ L +LLD
Sbjct: 127 SLIEDNYAALGTGAKLAVSLLD 148
>sp|Q9V0N9|PSB2_PYRAB Proteasome subunit beta 2 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmB2 PE=3 SV=1
Length = 207
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 56/237 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIFTITIL 79
G TTV + D ++A+D R S G +Y + +K+ +H + I + L
Sbjct: 9 KGTTTVGIVCSDGVVLAADRRASLGNIVYAKNVTKIHKIDEHLAIAGAGDVGDILNLVRL 68
Query: 80 ---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
++Y + K MS +LA +++ M+ G R PY ++ G D + + +YS D +
Sbjct: 69 LRAEAKLYYAQSGKRMSVKALATLLANMLNGARMLPYLAWFLVGGFDEKPR--LYSVDMM 126
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G + A GS ++LD++
Sbjct: 127 GGITEDKYVAAGSGMEFAYSVLDSEY---------------------------------- 152
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
+ + + + I + +A +A +RD+++GDG+ + IT++G +E
Sbjct: 153 --------------REDLKVREGIKIAVEAINSAIKRDVFSGDGIMVVTITEEGYRE 195
>sp|Q5JDJ9|PSB1_PYRKO Proteasome subunit beta 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmB1 PE=3 SV=1
Length = 203
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 56/239 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIFTITIL 79
G TTV + D ++A+D R S G + + +K+F DH I ++ L
Sbjct: 6 KGTTTVGIVCKDGVVLAADRRASLGNMVLSERVTKVFQIDDHLAIAGAGTVGDILSLVRL 65
Query: 80 ---PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
++Y + ++ MS +LA + S +++ R F Y ++ G D + +YS D
Sbjct: 66 LRAEAKLYRAKVSREMSVKALATLTSNILHSGRGFAYMAWFLVGGYDSAPR--LYSIDAA 123
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G F A GS +
Sbjct: 124 GGVTEDRFTAAGS------------------------------------------GMEFA 141
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
++L +EN + +PLE+ + + A AA +RD++TG GV L IT++G +E++
Sbjct: 142 FSVL-----EENY-RDGIPLEEGVKLALRAIKAATKRDVFTGGGVTLVTITEEGYREWS 194
>sp|C6A2V9|PSB1_THESM Proteasome subunit beta 1 OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=psmB1 PE=3 SV=1
Length = 207
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 56/237 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR---PTYNFLMIFTI 76
G TTV + D ++ +D R S G + ++ +K+F DH + L +
Sbjct: 8 KGTTTVGIVCKDGVVLTADRRASLGNMVISKGVTKIFQVDDHLALAGAGAVGDILSLVRA 67
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
++Y + K MST +LA + S ++ G+++ PY+ +I G D K +YS D
Sbjct: 68 LRAESKLYRAKVGKEMSTKALATLTSNILSGRKYLPYFGWFLIGGYDE--KPSLYSIDMA 125
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G + + GS ++LDN ++S K
Sbjct: 126 GGITEDKYVSAGSGMEFAYSILDN-----EYSEK-------------------------- 154
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
+ L + + A AA +RD++TGDG+ + I ++G +E
Sbjct: 155 -----------------ITLNNGVKLAIKAINAAIKRDVFTGDGIMVVTIDREGYRE 194
>sp|A1RSJ8|PSB1_PYRIL Proteasome subunit beta 1 OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=psmB1 PE=3 SV=1
Length = 203
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 13/145 (8%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT------YNFLMIF 74
G T V + D ++A++ R+S G+ + K+F D I
Sbjct: 8 GATAVGIKAKDGVVLAAEKRVSYGFYTLSSAGKKVFIINDKLAIASAGIIADMQTLARIL 67
Query: 75 TITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYD 134
+ ++ +++ E K + ++AK++SI+M+ +R P+Y ++ G+D EG + D
Sbjct: 68 KLNVMSYEL---EVRKKPTVRAMAKLLSIIMFSRRLLPFYAEVLVGGVDEEGPHLIV-MD 123
Query: 135 PIGHTERANFRAGGSSGALLQALLD 159
P+G N+ A G+ L +LLD
Sbjct: 124 PLGSLIEDNYAALGTGAKLAVSLLD 148
>sp|A4FYA5|PSB_METM5 Proteasome subunit beta OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=psmB PE=3 SV=1
Length = 219
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 55/239 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL--MIFTITIL 79
G TTV + D ++A+D R + G I +E KL+ D Y + I I+
Sbjct: 14 GTTTVGLLCKDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLIRII 73
Query: 80 PFQMYLHEH--NKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
+ +H+ M+ S +IS +++G R +P T I+ G D ++S DP+G
Sbjct: 74 SAEAKIHKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKLFSLDPVG 133
Query: 138 H-TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
E ++F A GS +L+ +
Sbjct: 134 GINEESSFTATGSGSPTAYGVLEAEY---------------------------------- 159
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
++ V ++K + V A ++A +RD Y+G+G+ L I KDG+K Y+
Sbjct: 160 --------------RSDVTIDKGLLVAVKALSSAMQRDAYSGNGISLAHINKDGVKLYS 204
>sp|A3MXQ6|PSB2_PYRCJ Proteasome subunit beta 2 OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=psmB2 PE=3 SV=1
Length = 203
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 93/242 (38%), Gaps = 55/242 (22%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT---YNFLMIFTIT 77
G T V + + ++A++ R+S G+ + K+F D + + I
Sbjct: 8 GATAVGIKTKEGVVLAAEKRVSYGFYTLSTAGKKVFIVNDRLAIASAGIIADMQTLAKIL 67
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
L + Y E + S ++AK++S++M+ +RF P++ ++ G+D EG + DP+G
Sbjct: 68 KLNAKAYELEMKRKPSVHAMAKLLSVVMFSRRFMPFFAEVLVGGIDDEGPHLIV-MDPLG 126
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
N+ A G+ L A++D
Sbjct: 127 SLIEDNYAALGTGAKLAIAIIDASY----------------------------------- 151
Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFP 257
K + L+ A + A AA ERD +G G+ L I K+G +E
Sbjct: 152 -------------KPDMSLQDAKKLAVQALKAALERDPVSGGGIDLVVIDKNGAREEEVK 198
Query: 258 LR 259
L+
Sbjct: 199 LQ 200
>sp|D3S8M7|PSB_METSF Proteasome subunit beta OS=Methanocaldococcus sp. (strain FS406-22)
GN=psmB PE=3 SV=1
Length = 224
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 55/237 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTI 76
G TTV + D I+A+D R S G + +E KL+ D Y + I +
Sbjct: 5 KGTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRL 64
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
++Y + + + A ++S +++ R FP+ T II G D ++S DP+
Sbjct: 65 LTAEAKLYKMRTGRNIPPLACATLLSNILHSSRVFPFLTQIIIGGYDLLEGAKLFSLDPL 124
Query: 137 -GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSS 195
G E F A GS + +L+
Sbjct: 125 GGMNEEKTFTATGSGSPIAYGVLEA----------------------------------- 149
Query: 196 KLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
G+ + +V E+ I + +A +A ERD ++G+G+ L ITK+G+K
Sbjct: 150 ------GYDREMSV-------EEGIKLAINALKSAMERDTFSGNGISLAVITKEGVK 193
>sp|A9A4A1|PSB1_NITMS Proteasome subunit beta 1 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB1 PE=3 SV=1
Length = 198
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 94/238 (39%), Gaps = 56/238 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQM 83
G T V + + AS+ R++ G + ++ K F ++ + IL Q+
Sbjct: 7 GATAVGITFDGGVVFASEKRIAFGNFLVSKTTKKTFPITPKVGATCAGLVADMQILSLQI 66
Query: 84 YL------HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
E + + ++AKM+S MMY +R+FP T I+ G+ K +Y+ DP+G
Sbjct: 67 AALAKIRKMELKRDVPPNTVAKMMSNMMYERRYFPLLTQVIVGGV--VDKPIMYTLDPLG 124
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
+ A G+ + +LD Q
Sbjct: 125 SVLPDEYAAVGTGAEMALGVLDPQF----------------------------------- 149
Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
+ N+ K ++AI + K A AA+ RD +GDGV + ITKDG +E+
Sbjct: 150 --------KPNMTK-----DEAIDLAKRAVRAASLRDSASGDGVDVLVITKDGTEEFT 194
>sp|Q975U8|PSB1_SULTO Proteasome subunit beta 1 OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=psmB1 PE=3 SV=1
Length = 197
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 99/239 (41%), Gaps = 60/239 (25%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLM--------IFTIT 77
T + + D I+A++ RLS G + +R K+F + +M + +
Sbjct: 7 TALGIKLNDGIILAAERRLSYGGFVLSRSAKKVFKIGRFGIAGAGIMGDIQTLTRLMNVE 66
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
I ++MY +NK +S + AK++S+++Y ++ P+ + + G+D EG ++ DPIG
Sbjct: 67 IKYYEMY---NNKPISVKAAAKLLSVILYQYKWTPFISELLFGGVDDEGP-KLFVLDPIG 122
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
N+ A GS + +L+++ +D ++
Sbjct: 123 SLIEDNYAAVGSGARVAIGVLESE--------------------YDPSMN---------- 152
Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNF 256
L+K +V A AA ERD+ +GDG+ + I +D +F
Sbjct: 153 ------------------LDKGKEIVLKALKAAIERDVTSGDGIDILTIKRDNTSSEDF 193
>sp|Q9YES4|PSB1_AERPE Proteasome subunit beta 1 OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=psmB1 PE=3
SV=2
Length = 203
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 70/144 (48%), Gaps = 8/144 (5%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIF-----TITI 78
G T + + D ++A+D R+S G I +R K+F R F ++ + I
Sbjct: 5 GATALGIRVEDGVVLAADKRMSYGGFILSRNFKKIF-VINDRIGIAFAGLYGDMGGLVRI 63
Query: 79 LPFQMYLH--EHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
+ QM L E K + ++AK +S ++Y +FFP+ I+ G+DP G+ +Y DP+
Sbjct: 64 VEGQMRLASLETGKPATVRNVAKFLSSLLYSYKFFPFNVEAIVGGIDPGGEPKLYVLDPL 123
Query: 137 GHTERANFRAGGSSGALLQALLDN 160
G ++ A G+ LL++
Sbjct: 124 GSIIEEDYVAAGTGATTAFGLLEH 147
>sp|A6VK02|PSB_METM7 Proteasome subunit beta OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=psmB PE=3 SV=1
Length = 219
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 93/239 (38%), Gaps = 55/239 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTIT 77
G TTV + D ++A+D R + G I +E KL+ D Y + + +
Sbjct: 14 GTTTVGLLCKDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLIRLI 73
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
++Y M+ S +IS +++G R +P T I+ G D ++S DP+G
Sbjct: 74 SAEAKIYKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKLFSLDPVG 133
Query: 138 H-TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
E ++F A GS +L+ +
Sbjct: 134 GINEESSFTATGSGSPTAYGVLEAEY---------------------------------- 159
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
++ V ++K + V A ++A +RD Y+G+G+ L I KDG+ Y+
Sbjct: 160 --------------RSDVTIDKGLLVAVKALSSAMQRDAYSGNGISLAHINKDGVNIYS 204
>sp|A9A788|PSB_METM6 Proteasome subunit beta OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=psmB PE=3 SV=1
Length = 219
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 93/239 (38%), Gaps = 55/239 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTIT 77
G TTV + D ++A+D R + G I +E KL+ D Y + + +
Sbjct: 14 GTTTVGLLCKDGVVLATDKRATMGNLIADKEAKKLYKIDDYIAMTIAGSVGDAQSLIRLI 73
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
++Y M+ S +IS +++G R +P T I+ G D ++S DP+G
Sbjct: 74 SAEAKIYKMRTGNNMTPLSCTTLISNVLHGNRHYPLLTQLILGGYDLINGAKLFSLDPVG 133
Query: 138 H-TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
E ++F A GS +L+ +
Sbjct: 134 GINEESSFTATGSGSPTAYGVLEAEY---------------------------------- 159
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
++ V ++K + V A ++A +RD Y+G+G+ L I KDG+ Y+
Sbjct: 160 --------------RSDVTIDKGLLVAVKALSSAMQRDAYSGNGISLAHINKDGVNIYS 204
>sp|Q9N9W8|PSB3_GIAIN Proteasome subunit beta type-3 OS=Giardia intestinalis GN=PRSBETA3
PE=2 SV=1
Length = 207
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 67/150 (44%), Gaps = 12/150 (8%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYN---------IYTREQSKLFDHYYYRPTYNFLMI 73
NG + + G D +A+D RL Y I+ QS L + + L
Sbjct: 8 NGSALIGIKGXDCVALAADKRLGCSYQTLTIGNEERIFRLSQSCLLGLAGLQT--DVLTT 65
Query: 74 FTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSY 133
+ + +Y + ++ + + AKMIS +Y RF PY+ S IIAG + +GK + +
Sbjct: 66 YRQIRMKSNLYHLQEDREIRPRATAKMISSFLYKHRFGPYFISPIIAGFEADGKPYLGAM 125
Query: 134 DPIGHTERA-NFRAGGSSGALLQALLDNQV 162
D IG + NF+ G++ L L + V
Sbjct: 126 DTIGCLDDCTNFQIAGTASDFLLGLCETHV 155
>sp|A2BN24|PSB1_HYPBU Proteasome subunit beta 1 OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=psmB1 PE=3 SV=1
Length = 204
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 94/206 (45%), Gaps = 14/206 (6%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTY------NFLMIFTI 76
G T V + G Y ++A++ R+S G I ++ K++ Y + I I
Sbjct: 7 TGATAVGIRGAGYVVLAAEKRVSYGGFIISKTARKVYKITDYLGLALAGLFADLQAISKI 66
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
+ Y + +S ++A++++ ++Y +++P+ + T++ GL+ +G +Y DP+
Sbjct: 67 LRAEIEYYNIVTGRRISVRAVARLLATILYSYKYYPFLSETLVGGLEADGTAKLYVMDPL 126
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G ++ A GS + +L+N K + +R A+ R +A+S
Sbjct: 127 GSLIEDDYAAIGSGAPIAIGILENGYSKDMSVDDAKKLAIAAVRA---AIER--DAMSGD 181
Query: 197 LTILLGFRNQENVDKTPVPLEKAISV 222
LL R +E+ K E++I++
Sbjct: 182 GIDLLVIRREEDSIKAE---EESITI 204
>sp|A9A2U7|PSB2_NITMS Proteasome subunit beta 2 OS=Nitrosopumilus maritimus (strain SCM1)
GN=psmB2 PE=3 SV=1
Length = 210
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 91/235 (38%), Gaps = 55/235 (23%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGY---NIYTREQSKLFDHYYYRPTYNFLMIFTIT-IL 79
G TTV + D ++ +D R SAGY N T + K+ DH I IL
Sbjct: 12 GTTTVGIKAKDGVVLCADMRASAGYFIANNNTMKIQKIDDHAGLTLAGGVADAQNIVDIL 71
Query: 80 PFQMYLH--EHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
+ LH E + +S SLA++ S++ + R +P+ ++ G D EG +++ D G
Sbjct: 72 RYHSNLHRVEKHGPISIHSLARLCSLIFHQNRGYPFMADILVGGYDAEGP-ALFNIDMFG 130
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
E+ + GS + LL+ +
Sbjct: 131 SVEKKAYVTTGSGSPVAYGLLEEEY----------------------------------- 155
Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
+ + +E+A + A AA R+I TGDG+++ + KDG +
Sbjct: 156 -------------REDLTVEEAKKIALRAVKAAIVRNIGTGDGINIAIMDKDGFR 197
>sp|A0RU86|PSB1_CENSY Proteasome subunit beta 1 OS=Cenarchaeum symbiosum (strain A)
GN=psmB1 PE=3 SV=1
Length = 193
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 72/167 (43%), Gaps = 8/167 (4%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQM 83
G T V + I+AS+ R++ G + ++ K F Y ++ + IL Q+
Sbjct: 3 GATAVGITYAGGVILASEKRIAYGNFLVSKNTRKTFQITPYVGAACAGLVADMQILSLQI 62
Query: 84 YLHEHNKVMST------TSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
+ M S+AKM+S MMY +RFFP T I+ G+ G+ +Y+ D +G
Sbjct: 63 SALAKIRKMDLKRDIPPNSVAKMMSNMMYERRFFPLLTQVIVGGV--VGEPAIYTLDSLG 120
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDL 184
+ A G+ + +LD Q + + GIR+ L
Sbjct: 121 SVLPDEYAAVGTGAEMALGVLDPQFKSGMSEKDAVDLAVRGIRSAAL 167
>sp|P40112|PSB3_RAT Proteasome subunit beta type-3 OS=Rattus norvegicus GN=Psmb3 PE=1
SV=1
Length = 205
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI 73
S S NGG +A+ G + IA+D R + T + K+F D Y +
Sbjct: 1 MSVMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 74 FTITI-LPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG-KGC 129
T+ L F++ L+E + + +L M++ ++Y KRF PYYT +IAGLDP+ K
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 130 VYSYDPIG 137
+ S D IG
Sbjct: 121 ICSLDLIG 128
>sp|Q8PZ04|PSB_METMA Proteasome subunit beta OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=psmB PE=3 SV=1
Length = 210
Score = 54.3 bits (129), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTYNFL----MIFTIT 77
G TTV V D ++AS+ R + G+ I ++ K++ D T + + +
Sbjct: 9 GTTTVGVVCTDGIVLASEQRATMGHFIASKTAKKVYQIDDLVGMTTAGSVGDAQQLVRLV 68
Query: 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
+ Q+Y N+ M+ +A ++S + R++P +I G+D G +YS DP+G
Sbjct: 69 SVESQLYKMRRNESMTIKGIATLMSNFLNANRYYPMMVQLLIGGVDKNGP-AIYSLDPMG 127
Query: 138 HT-ERANFRAGGSSGALLQALLDNQ 161
+ E A GS + +L++Q
Sbjct: 128 GSIEETRISATGSGSPMAYGVLEDQ 152
>sp|Q9R1P1|PSB3_MOUSE Proteasome subunit beta type-3 OS=Mus musculus GN=Psmb3 PE=1 SV=1
Length = 205
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI 73
S S NGG +A+ G + IA+D R + T + K+F D Y +
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 74 FTITI-LPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG-KGC 129
T+ L F++ L+E + + +L M++ ++Y KRF PYYT +IAGLDP+ K
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 130 VYSYDPIG 137
+ S D IG
Sbjct: 121 ICSLDLIG 128
>sp|P33672|PSB3_BOVIN Proteasome subunit beta type-3 OS=Bos taurus GN=PSMB3 PE=1 SV=3
Length = 205
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI 73
S S NGG +A+ G + IA+D R + T + K+F D Y +
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 74 FTITI-LPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG-KGC 129
T+ L F++ L+E + + +L M++ ++Y KRF PYYT +IAGLDP+ K
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 130 VYSYDPIG 137
+ S D IG
Sbjct: 121 ICSLDLIG 128
>sp|P49720|PSB3_HUMAN Proteasome subunit beta type-3 OS=Homo sapiens GN=PSMB3 PE=1 SV=2
Length = 205
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 7/128 (5%)
Query: 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMI 73
S S NGG +A+ G + IA+D R + T + K+F D Y +
Sbjct: 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDV 60
Query: 74 FTITI-LPFQMYLHE--HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG-KGC 129
T+ L F++ L+E + + +L M++ ++Y KRF PYYT +IAGLDP+ K
Sbjct: 61 QTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPF 120
Query: 130 VYSYDPIG 137
+ S D IG
Sbjct: 121 ICSLDLIG 128
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,743,185
Number of Sequences: 539616
Number of extensions: 3723634
Number of successful extensions: 9396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 9025
Number of HSP's gapped (non-prelim): 336
length of query: 261
length of database: 191,569,459
effective HSP length: 115
effective length of query: 146
effective length of database: 129,513,619
effective search space: 18908988374
effective search space used: 18908988374
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)