Query psy10322
Match_columns 261
No_of_seqs 141 out of 1213
Neff 5.9
Searched_HMMs 46136
Date Fri Aug 16 23:30:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10322.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10322hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0179|consensus 100.0 1.9E-50 4.1E-55 349.6 20.1 209 9-261 14-235 (235)
2 cd03757 proteasome_beta_type_1 100.0 2E-49 4.4E-54 348.8 25.3 201 17-261 1-212 (212)
3 cd03759 proteasome_beta_type_3 100.0 7.2E-45 1.6E-49 315.7 23.8 181 23-256 2-194 (195)
4 cd03760 proteasome_beta_type_4 100.0 4.1E-43 9E-48 304.9 22.5 179 23-254 1-195 (197)
5 cd03761 proteasome_beta_type_5 100.0 9.1E-43 2E-47 300.9 22.8 175 25-253 1-186 (188)
6 cd03758 proteasome_beta_type_2 100.0 9.7E-42 2.1E-46 295.9 22.7 178 25-255 2-192 (193)
7 TIGR03634 arc_protsome_B prote 100.0 1.4E-41 3.1E-46 291.5 22.6 174 24-251 1-185 (185)
8 COG0638 PRE1 20S proteasome, a 100.0 2.2E-41 4.7E-46 303.1 21.4 187 14-254 20-220 (236)
9 cd03762 proteasome_beta_type_6 100.0 6.7E-41 1.5E-45 288.3 23.2 176 25-254 1-187 (188)
10 cd03764 proteasome_beta_archea 100.0 6.9E-41 1.5E-45 288.2 23.2 175 25-253 1-186 (188)
11 PTZ00488 Proteasome subunit be 100.0 7E-41 1.5E-45 301.8 22.6 179 22-254 37-226 (247)
12 cd03763 proteasome_beta_type_7 100.0 3.4E-40 7.4E-45 284.6 23.3 175 25-254 1-186 (189)
13 cd01912 proteasome_beta protea 100.0 1.3E-39 2.8E-44 279.4 23.2 177 25-254 1-188 (189)
14 TIGR03690 20S_bact_beta protea 100.0 2.7E-39 5.9E-44 285.9 22.7 179 23-254 1-202 (219)
15 cd03750 proteasome_alpha_type_ 100.0 4.2E-38 9.1E-43 279.4 22.0 182 15-253 19-216 (227)
16 PTZ00246 proteasome subunit al 100.0 4.1E-38 8.9E-43 283.7 21.8 177 21-250 28-219 (253)
17 cd03765 proteasome_beta_bacter 100.0 1.6E-37 3.5E-42 278.5 22.8 177 25-253 1-204 (236)
18 cd03752 proteasome_alpha_type_ 100.0 8.7E-38 1.9E-42 274.7 20.7 177 16-246 22-213 (213)
19 TIGR03633 arc_protsome_A prote 100.0 2.3E-37 5.1E-42 273.7 22.0 183 17-256 23-220 (224)
20 cd03754 proteasome_alpha_type_ 100.0 1.3E-37 2.9E-42 274.4 19.3 179 13-246 18-215 (215)
21 PF00227 Proteasome: Proteasom 100.0 4.1E-37 8.8E-42 262.8 21.5 173 21-246 1-190 (190)
22 cd03755 proteasome_alpha_type_ 100.0 4.6E-37 9.9E-42 269.0 20.6 172 17-246 21-207 (207)
23 cd01911 proteasome_alpha prote 100.0 8.2E-37 1.8E-41 267.4 20.5 174 17-246 21-209 (209)
24 PRK03996 proteasome subunit al 100.0 1.3E-36 2.9E-41 271.8 21.7 179 21-255 33-226 (241)
25 cd01906 proteasome_protease_Hs 100.0 1.8E-36 4E-41 257.1 21.4 169 25-246 1-182 (182)
26 cd03756 proteasome_alpha_arche 100.0 1.7E-36 3.8E-41 265.9 20.8 171 21-247 25-210 (211)
27 cd03749 proteasome_alpha_type_ 100.0 1.9E-36 4.2E-41 266.2 20.8 178 14-247 18-211 (211)
28 KOG0180|consensus 100.0 1.5E-36 3.1E-41 256.7 17.1 191 18-261 2-204 (204)
29 cd03751 proteasome_alpha_type_ 100.0 3.2E-36 6.9E-41 265.4 20.1 171 21-246 27-212 (212)
30 cd03753 proteasome_alpha_type_ 100.0 1.9E-35 4E-40 259.7 20.3 173 17-246 21-213 (213)
31 TIGR03691 20S_bact_alpha prote 100.0 3.2E-34 7E-39 255.8 19.9 183 6-250 10-211 (228)
32 KOG0185|consensus 100.0 1E-34 2.2E-39 255.4 15.6 193 12-255 30-236 (256)
33 KOG0174|consensus 100.0 1.3E-34 2.7E-39 248.8 15.0 184 21-258 16-210 (224)
34 KOG0177|consensus 100.0 5.3E-34 1.2E-38 243.9 17.1 178 25-255 2-192 (200)
35 KOG0176|consensus 100.0 5.2E-33 1.1E-37 239.6 16.8 176 22-253 32-228 (241)
36 KOG0175|consensus 100.0 5.5E-32 1.2E-36 240.7 14.5 178 22-253 69-257 (285)
37 KOG0173|consensus 100.0 7E-31 1.5E-35 233.1 16.4 180 19-253 32-222 (271)
38 PRK05456 ATP-dependent proteas 100.0 1.6E-28 3.5E-33 210.8 18.5 155 24-245 1-171 (172)
39 cd01913 protease_HslV Protease 100.0 1.3E-27 2.8E-32 204.9 18.3 154 25-245 1-170 (171)
40 KOG0183|consensus 100.0 7E-28 1.5E-32 210.0 15.5 175 21-250 27-216 (249)
41 KOG0178|consensus 100.0 9.8E-28 2.1E-32 208.7 15.9 180 22-253 29-223 (249)
42 KOG0182|consensus 100.0 6.4E-27 1.4E-31 203.7 17.9 189 13-254 25-228 (246)
43 TIGR03692 ATP_dep_HslV ATP-dep 99.9 8.1E-27 1.8E-31 200.0 18.0 155 25-245 1-170 (171)
44 KOG0181|consensus 99.9 4.4E-27 9.5E-32 202.6 14.4 185 13-254 22-221 (233)
45 cd01901 Ntn_hydrolase The Ntn 99.9 3.3E-25 7.2E-30 180.8 19.2 150 25-228 1-163 (164)
46 KOG0184|consensus 99.9 9.4E-26 2E-30 197.5 15.4 172 21-247 31-217 (254)
47 KOG0863|consensus 99.9 3.2E-23 6.9E-28 182.5 15.3 175 21-250 29-219 (264)
48 COG3484 Predicted proteasome-t 99.0 3.6E-09 7.8E-14 92.7 11.4 179 24-254 1-206 (255)
49 COG5405 HslV ATP-dependent pro 98.5 1.1E-06 2.3E-11 74.8 10.8 161 23-247 3-176 (178)
50 PF09894 DUF2121: Uncharacteri 93.7 0.15 3.2E-06 44.9 5.7 41 209-249 140-180 (194)
51 COG4079 Uncharacterized protei 79.6 8.6 0.00019 35.4 7.4 41 209-249 141-181 (293)
52 PRK09732 hypothetical protein; 55.4 33 0.00072 28.4 5.6 40 211-254 4-43 (134)
53 COG3193 GlcG Uncharacterized p 52.6 48 0.001 27.9 6.1 40 211-254 5-44 (141)
54 PF03928 DUF336: Domain of unk 47.2 29 0.00063 28.0 3.9 38 213-254 2-39 (132)
55 KOG3361|consensus 41.4 41 0.00088 28.3 3.9 32 131-162 71-102 (157)
56 PRK02487 hypothetical protein; 41.3 1.3E+02 0.0027 25.5 7.1 37 211-252 20-56 (163)
57 COG4245 TerY Uncharacterized p 40.4 50 0.0011 29.4 4.5 41 217-257 21-61 (207)
58 PRK02260 S-ribosylhomocysteina 36.6 2.1E+02 0.0046 24.6 7.6 98 94-234 53-151 (158)
59 PF11773 PulG: Type II secreto 32.6 1.6E+02 0.0035 22.6 5.6 39 214-254 34-73 (82)
60 PHA01082 putative transcriptio 29.4 81 0.0017 26.1 3.8 38 194-235 15-52 (133)
61 PF02609 Exonuc_VII_S: Exonucl 26.3 2.1E+02 0.0045 19.5 5.0 21 211-231 17-37 (53)
62 PF08529 NusA_N: NusA N-termin 21.2 1.8E+02 0.0038 23.3 4.4 41 211-251 12-52 (122)
No 1
>KOG0179|consensus
Probab=100.00 E-value=1.9e-50 Score=349.64 Aligned_cols=209 Identities=55% Similarity=0.923 Sum_probs=199.3
Q ss_pred hcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HH
Q psy10322 9 LETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------IT 77 (261)
Q Consensus 9 ~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~l 77 (261)
-+++.++.|+||.+||||+|||++.|+.|||+|||.+.|+.|.+|+.+|||+++ |+++++.+ .+
T Consensus 14 s~~~~~~~f~PY~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~-----D~~vl~~sGF~aD~l~L~k~i 88 (235)
T KOG0179|consen 14 SKTMDHERFSPYEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLG-----DNIVLGSSGFYADTLALVKVI 88 (235)
T ss_pred cCccccccCCccccCCceEEEEcCCceEEEecccccccceeeeccccchheecc-----CceEEecccchhhHHHHHHHH
Confidence 456788889999999999999999999999999999999999999999999999 99999765 78
Q ss_pred HHHHHhhhhhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322 78 ILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL 157 (261)
Q Consensus 78 r~~~~~y~~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~ 157 (261)
+.+++.|+++++..|+++.+|++|+.+||.+|++||++..|+||+|++|||.+|++||.|++++..+.|.|+++.+++|+
T Consensus 89 ~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~Pf 168 (235)
T KOG0179|consen 89 KSRIKQYEHDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPF 168 (235)
T ss_pred HHHHHHHhhcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCC--CCCCCCCCHHHHHHHHHHHHHHHHhccc
Q psy10322 158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQE--NVDKTPVPLEKAISVVKDAFTAAAERDI 235 (261)
Q Consensus 158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~eea~~l~~~al~~~~~rd~ 235 (261)
||++. +++||. +..++.+|+|+|++|++++|.+|.|||+
T Consensus 169 LDnQi---------------------------------------~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI 209 (235)
T KOG0179|consen 169 LDNQI---------------------------------------GHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDI 209 (235)
T ss_pred hhhhc---------------------------------------cCcCcccccCcccccCHHHHHHHHHHHhhhhhhccc
Confidence 99997 666663 5668899999999999999999999999
Q ss_pred CCCCcEEEEEEEcCCEEEEeeccCCC
Q psy10322 236 YTGDGVHLCAITKDGIKEYNFPLRKD 261 (261)
Q Consensus 236 ~~g~~v~i~~itkdg~~~~~~~~r~~ 261 (261)
.+|+.++||+++|||++.+.+|||+|
T Consensus 210 ~tGD~l~i~I~tk~gV~~e~~~LrkD 235 (235)
T KOG0179|consen 210 YTGDKLEICIITKDGVEVETLPLRKD 235 (235)
T ss_pred ccCCcEEEEEEecCCEEEEeeeccCC
Confidence 99999999999999999999999998
No 2
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2e-49 Score=348.76 Aligned_cols=201 Identities=56% Similarity=0.948 Sum_probs=189.2
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
|+||+++|+|+|||+|+||||||+|+|.++|.++..++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 1 ~~~~~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~aD~~~l~~~~r~~~~~~~ 75 (212)
T cd03757 1 FSPYTDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLT-----DKCVLGSSGFQADILALTKRLKARIKMYK 75 (212)
T ss_pred CCCccCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcC-----CCEEEEccchHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999888889999999999 99999886 8888999999
Q ss_pred hhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
+.+|++|+++.+|+++++++|++|.+||+|++||||||++++|+||++||+|++++++++|+|+|+.+++++||+.|
T Consensus 76 ~~~g~~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~--- 152 (212)
T cd03757 76 YSHNKEMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQV--- 152 (212)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHH---
Confidence 99999999999999999999998889999999999999888899999999999999999999999999999999988
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+.++|...|+++||+|||++++++||+.+.+||+.+|++++|++
T Consensus 153 ------------------------------------~~~~~~~~~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~i 196 (212)
T cd03757 153 ------------------------------------GRKNQNNVERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVI 196 (212)
T ss_pred ------------------------------------HhhccCcCCCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEE
Confidence 22222223569999999999999999999999999999999999
Q ss_pred EEcCCEEEEeeccCCC
Q psy10322 246 ITKDGIKEYNFPLRKD 261 (261)
Q Consensus 246 itkdg~~~~~~~~r~~ 261 (261)
||++|++++.+++|+|
T Consensus 197 it~~g~~~~~~~~~~~ 212 (212)
T cd03757 197 ITKDGIEEETFPLRKD 212 (212)
T ss_pred EcCCCEEEEeeccCCC
Confidence 9999999999999998
No 3
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.2e-45 Score=315.67 Aligned_cols=181 Identities=27% Similarity=0.461 Sum_probs=173.2
Q ss_pred CCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCc
Q psy10322 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKV 91 (261)
Q Consensus 23 ~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~ 91 (261)
+|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 76 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIG-----DRLYIGLAGLATDVQTLAQKLRFRVNLYRLREERE 76 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeC-----CCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6999999999999999999999999887788899999999 99999987 8889999999999999
Q ss_pred CCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecC-EEEEecChHHHHHHHHhhhhccccccc
Q psy10322 92 MSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN-FRAGGSSGALLQALLDNQVGIIQHSSK 170 (261)
Q Consensus 92 isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~ 170 (261)
|+++.+|++|++++|++|.+||+|++||||||++++|+||++||+|++..++ ++|+|+|+.+++++||+.|
T Consensus 77 ~~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~-------- 148 (195)
T cd03759 77 IKPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLW-------- 148 (195)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhcc--------
Confidence 9999999999999999989999999999999988889999999999998877 9999999999999999976
Q ss_pred chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322 171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250 (261)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg 250 (261)
+++||.|||++++++||..+.+||+.++++++|++|+++|
T Consensus 149 ----------------------------------------~~~~s~~ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 188 (195)
T cd03759 149 ----------------------------------------RPDMEPDELFETISQALLSAVDRDALSGWGAVVYIITKDK 188 (195)
T ss_pred ----------------------------------------CCCCCHHHHHHHHHHHHHHHHhhCcccCCceEEEEEcCCc
Confidence 8999999999999999999999999999999999999999
Q ss_pred EEEEee
Q psy10322 251 IKEYNF 256 (261)
Q Consensus 251 ~~~~~~ 256 (261)
++++++
T Consensus 189 ~~~~~~ 194 (195)
T cd03759 189 VTTRTL 194 (195)
T ss_pred EEEEec
Confidence 999886
No 4
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.1e-43 Score=304.87 Aligned_cols=179 Identities=20% Similarity=0.249 Sum_probs=167.7
Q ss_pred CCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHH-hhhhhcCC
Q psy10322 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQ-MYLHEHNK 90 (261)
Q Consensus 23 ~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~-~y~~~~g~ 90 (261)
+|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+ +|++|+++ ++|.+++ .|.++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~ 75 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVG-----DNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGH 75 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEec-----CcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5899999999999999999999988899999999999999 99999886 7777876 46678899
Q ss_pred cCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccc
Q psy10322 91 VMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHS 168 (261)
Q Consensus 91 ~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~ 168 (261)
+|+++.+|+++++++|++| +|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus 76 ~~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~------ 149 (197)
T cd03760 76 SLSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAW------ 149 (197)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhc------
Confidence 9999999999999999876 78999999999999767899999999999999999999999999999999986
Q ss_pred ccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322 169 SKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI 246 (261)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i 246 (261)
++ +||.|||++++++||+.+.+||+.++++++|++|
T Consensus 150 ------------------------------------------~~~~~ms~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii 187 (197)
T cd03760 150 ------------------------------------------EKKPDLTEEEARALIEECMKVLYYRDARSINKYQIAVV 187 (197)
T ss_pred ------------------------------------------CCCCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEE
Confidence 66 9999999999999999999999999999999999
Q ss_pred EcCCEEEE
Q psy10322 247 TKDGIKEY 254 (261)
Q Consensus 247 tkdg~~~~ 254 (261)
+++|++++
T Consensus 188 ~~~g~~~~ 195 (197)
T cd03760 188 TKEGVEIE 195 (197)
T ss_pred CCCCEEeC
Confidence 99998754
No 5
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.1e-43 Score=300.92 Aligned_cols=175 Identities=23% Similarity=0.324 Sum_probs=168.2
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ ++|.+++.|++.++++|+
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~ 75 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEIN-----PYLLGTMAGGAADCQYWERVLGRECRLYELRNKERIS 75 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEcc-----CcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 58999999999999999999999889899999999999 99999876 889999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+|+++++++|.+|.+||+|++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus 76 ~~~la~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~----------- 143 (188)
T cd03761 76 VAAASKLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGY----------- 143 (188)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcC-----------
Confidence 9999999999999999899999999999995 5699999999999999999999999999999999975
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||.|||++++++||..+.+||+.+|++++|++|++||+++
T Consensus 144 -------------------------------------~~~~s~eea~~l~~~~l~~~~~rd~~sg~~~~v~ii~~~g~~~ 186 (188)
T cd03761 144 -------------------------------------RYDLSVEEAYDLARRAIYHATHRDAYSGGNVNLYHVREDGWRK 186 (188)
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEcCCceEE
Confidence 8999999999999999999999999999999999999999975
No 6
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.7e-42 Score=295.86 Aligned_cols=178 Identities=21% Similarity=0.326 Sum_probs=167.3
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+|+||||||+|+|.++|.++.+++++|||+|+ +|++++++ +++.+++.|++.++++++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~ 76 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLS-----DHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELS 76 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeC-----CCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 69999999999999999999999889999999999999 99999886 888899999999999999
Q ss_pred HHHHHHHHHHHHhcc-cc-CCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccc
Q psy10322 94 TTSLAKMISIMMYGK-RF-FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQ 171 (261)
Q Consensus 94 v~~lA~~Is~~ly~~-r~-~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 171 (261)
++.+++++++++|.+ |. +||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus 77 ~~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~--------- 147 (193)
T cd03758 77 PKAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYY--------- 147 (193)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhcc---------
Confidence 999999999998643 33 6999999999999777899999999999999999999999999999999976
Q ss_pred hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322 172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251 (261)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~ 251 (261)
+++||.|||++++.+||+.+.+||+.++++++|++|+++|+
T Consensus 148 ---------------------------------------~~~ms~eeai~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g~ 188 (193)
T cd03758 148 ---------------------------------------KPDMTVEEALELMKKCIKELKKRFIINLPNFTVKVVDKDGI 188 (193)
T ss_pred ---------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCCe
Confidence 78999999999999999999999999999999999999999
Q ss_pred EEEe
Q psy10322 252 KEYN 255 (261)
Q Consensus 252 ~~~~ 255 (261)
++..
T Consensus 189 ~~~~ 192 (193)
T cd03758 189 RDLE 192 (193)
T ss_pred EeCC
Confidence 7643
No 7
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=1.4e-41 Score=291.51 Aligned_cols=174 Identities=29% Similarity=0.503 Sum_probs=166.7
Q ss_pred CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM 92 (261)
Q Consensus 24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i 92 (261)
|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++++++ +++.+++.|++.+++++
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 75 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQID-----DYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPM 75 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcC-----CCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 789999999999999999999999999999999999999 99999886 77788999999999999
Q ss_pred CHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccch
Q psy10322 93 STTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQM 172 (261)
Q Consensus 93 sv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~ 172 (261)
+++.+|+++++++|.++++||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus 76 ~~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~---------- 144 (185)
T TIGR03634 76 SVKALATLLSNILNSNRFFPFIVQLLVGGVDEE-GPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEY---------- 144 (185)
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEEEEEEEeCC-CCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcC----------
Confidence 999999999999999999999999999999975 499999999999999999999999999999999975
Q ss_pred hhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322 173 KSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251 (261)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~ 251 (261)
+++||.+||++++++||..+.+||+.++++++|++|+++|+
T Consensus 145 --------------------------------------~~~~s~~ea~~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 145 --------------------------------------REDMSVEEAKKLAVRAIKSAIERDVASGNGIDVAVITKDGV 185 (185)
T ss_pred --------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEcCCCC
Confidence 89999999999999999999999999999999999999985
No 8
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-41 Score=303.14 Aligned_cols=187 Identities=28% Similarity=0.415 Sum_probs=175.3
Q ss_pred cccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHH
Q psy10322 14 QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQ 82 (261)
Q Consensus 14 ~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~ 82 (261)
.+.+.+....|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ ||++|+++ +++.+++
T Consensus 20 e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~-----d~i~~~~sG~~aDa~~lv~~~r~~a~ 94 (236)
T COG0638 20 EYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKID-----DHIGMAIAGLAADAQVLVRYARAEAQ 94 (236)
T ss_pred HHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEec-----CCEEEEeccCcHhHHHHHHHHHHHHH
Confidence 3456677777899999999999999999999999999999999999999 99999987 7888999
Q ss_pred hhhhhcCCcCCHHHHHHHHHHHHhcccc--CCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHh
Q psy10322 83 MYLHEHNKVMSTTSLAKMISIMMYGKRF--FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDN 160 (261)
Q Consensus 83 ~y~~~~g~~isv~~lA~~Is~~ly~~r~--~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~ 160 (261)
.|++.++++|+++.+|+++++++|+++. |||+|++||||+|+ ++|+||++||+|++.++++.|+|+|+..++++||+
T Consensus 95 ~~~~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~ 173 (236)
T COG0638 95 LYRLRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEK 173 (236)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHh
Confidence 9999999999999999999999999887 99999999999998 88999999999999999999999999999999999
Q ss_pred hhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322 161 QVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG 240 (261)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~ 240 (261)
+| +++|++|||++++++||.++.+||..++++
T Consensus 174 ~y------------------------------------------------~~~m~~eeai~la~~al~~a~~rd~~s~~~ 205 (236)
T COG0638 174 EY------------------------------------------------REDLSLEEAIELAVKALRAAIERDAASGGG 205 (236)
T ss_pred hc------------------------------------------------cCCCCHHHHHHHHHHHHHHHHhccccCCCC
Confidence 87 789999999999999999999999989999
Q ss_pred EEEEEEEc-CCEEEE
Q psy10322 241 VHLCAITK-DGIKEY 254 (261)
Q Consensus 241 v~i~~itk-dg~~~~ 254 (261)
++|++|++ +|.+..
T Consensus 206 ~~v~vi~~~~~~~~~ 220 (236)
T COG0638 206 IEVAVITKDEGFRKL 220 (236)
T ss_pred eEEEEEEcCCCeEEc
Confidence 99999998 566553
No 9
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-41 Score=288.29 Aligned_cols=176 Identities=26% Similarity=0.304 Sum_probs=167.3
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|++.++++++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 75 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLH-----DRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPL 75 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEcc-----CCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCC
Confidence 58999999999999999999999888889999999999 99999876 888899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+|+++++++|.+| +||+|++||||||++++|+||++||.|++.+++++++|+|+.+++++||+.|
T Consensus 76 ~~~~a~~l~~~~~~~~-~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~----------- 143 (188)
T cd03762 76 VKTAASLFKNLCYNYK-EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANY----------- 143 (188)
T ss_pred HHHHHHHHHHHHHhcc-ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcC-----------
Confidence 9999999999999886 7899999999999766799999999999999999999999999999999975
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||.|||++++++||+.+.+||+.+|++++|++|+++|+++
T Consensus 144 -------------------------------------~~~~s~~ea~~l~~~al~~~~~rd~~~~~~~~i~~i~~~g~~~ 186 (188)
T cd03762 144 -------------------------------------KPGMTLEECIKFVKNALSLAMSRDGSSGGVIRLVIITKDGVER 186 (188)
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCCEEEEEECCCCEEE
Confidence 8999999999999999999999999999999999999999976
Q ss_pred E
Q psy10322 254 Y 254 (261)
Q Consensus 254 ~ 254 (261)
+
T Consensus 187 ~ 187 (188)
T cd03762 187 K 187 (188)
T ss_pred e
Confidence 4
No 10
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.9e-41 Score=288.21 Aligned_cols=175 Identities=30% Similarity=0.485 Sum_probs=167.2
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++++++ +++.+++.|++.++++++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 75 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQID-----DKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMS 75 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEcc-----CCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 58999999999999999999999999999999999999 99999876 778888999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+++++++++|.+|++||+|++||||||+ ++|+||++||.|++.+++++|+|+|+.+++++||+.|
T Consensus 76 ~~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~----------- 143 (188)
T cd03764 76 IKALATLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEY----------- 143 (188)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcC-----------
Confidence 9999999999999999999999999999996 6799999999999999999999999999999999975
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++|+.|||++++++||+.+.+||+.++++++|++|++||+++
T Consensus 144 -------------------------------------~~~~~~~ea~~l~~~~l~~~~~rd~~~~~~i~i~iv~~~g~~~ 186 (188)
T cd03764 144 -------------------------------------KEDMTVEEAKKLAIRAIKSAIERDSASGDGIDVVVITKDGYKE 186 (188)
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEECCCCeEe
Confidence 8999999999999999999999999999999999999999764
No 11
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=7e-41 Score=301.84 Aligned_cols=179 Identities=23% Similarity=0.312 Sum_probs=169.8
Q ss_pred cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK 90 (261)
Q Consensus 22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~ 90 (261)
.+|+|+|||+|+||||||+|+|.++|.++.+++.+|||+|+ +|++++++ ++|.+++.|++++|+
T Consensus 37 ~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~-----~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~ 111 (247)
T PTZ00488 37 AHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEIN-----PTLLGTMAGGAADCSFWERELAMQCRLYELRNGE 111 (247)
T ss_pred CCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcC-----CCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 46999999999999999999999999999999999999999 99999876 888999999999999
Q ss_pred cCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccccc
Q psy10322 91 VMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSK 170 (261)
Q Consensus 91 ~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 170 (261)
+|+++.+|++|++++|.+|..|+.+++||||||++| |+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus 112 ~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~~g-p~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~-------- 182 (247)
T PTZ00488 112 LISVAAASKILANIVWNYKGMGLSMGTMICGWDKKG-PGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGF-------- 182 (247)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeCCC-CEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcC--------
Confidence 999999999999999999877888889999999655 99999999999999999999999999999999976
Q ss_pred chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322 171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250 (261)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg 250 (261)
+++||.|||++++++||..+.+||+.+|++++|++|+++|
T Consensus 183 ----------------------------------------k~dms~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g 222 (247)
T PTZ00488 183 ----------------------------------------KWDLNDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG 222 (247)
T ss_pred ----------------------------------------cCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc
Confidence 8899999999999999999999999999999999999999
Q ss_pred EEEE
Q psy10322 251 IKEY 254 (261)
Q Consensus 251 ~~~~ 254 (261)
++..
T Consensus 223 ~~~l 226 (247)
T PTZ00488 223 WKKI 226 (247)
T ss_pred cEEC
Confidence 7654
No 12
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.4e-40 Score=284.62 Aligned_cols=175 Identities=22% Similarity=0.285 Sum_probs=165.8
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+|+||||||+|+|.++|.++..++.+|||+|+ +|++|+.+ +++.+++.|+++++++++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 75 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIA-----PNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPR 75 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEec-----CCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 58999999999999999999999889899999999999 99999876 788899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+|++|++++|.++ .||+|++||||||++| |+||++||.|++.+++++|+|+++.+++++||+.|
T Consensus 76 ~~~~a~~l~~~l~~~~-~p~~v~~ivaG~d~~g-~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~----------- 142 (189)
T cd03763 76 VVTALTMLKQHLFRYQ-GHIGAALVLGGVDYTG-PHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRY----------- 142 (189)
T ss_pred HHHHHHHHHHHHHHcC-CccceeEEEEeEcCCC-CEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhc-----------
Confidence 9999999999998764 5999999999999654 99999999999999999999999999999999976
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||.+||++++++||+.+.+||+.+|++++|++|++||+++
T Consensus 143 -------------------------------------~~~ls~~ea~~l~~~~l~~~~~rd~~~~~~~~v~ii~~~g~~~ 185 (189)
T cd03763 143 -------------------------------------KPDMTEEEAKKLVCEAIEAGIFNDLGSGSNVDLCVITKDGVEY 185 (189)
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCcEEE
Confidence 8999999999999999999999999999999999999999986
Q ss_pred E
Q psy10322 254 Y 254 (261)
Q Consensus 254 ~ 254 (261)
.
T Consensus 186 ~ 186 (189)
T cd03763 186 L 186 (189)
T ss_pred e
Confidence 4
No 13
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-39 Score=279.37 Aligned_cols=177 Identities=35% Similarity=0.549 Sum_probs=168.5
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++..++.+|||+|+ ++++++++ +++.+++.|++.++++++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 75 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKIS-----DNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELS 75 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEcc-----CCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 58999999999999999999999888789999999999 99999876 778899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+++++++++|.+|.+||+|++||||+|++++|+||++||.|++.+++++|+|+++.+++++||+.|
T Consensus 76 ~~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~----------- 144 (189)
T cd01912 76 VKAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGY----------- 144 (189)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhcc-----------
Confidence 999999999999998889999999999999867899999999999999999999999999999999976
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||.|||++++++||..+.+||+.++++++|++|+++|+++
T Consensus 145 -------------------------------------~~~~s~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g~~~ 187 (189)
T cd01912 145 -------------------------------------KPDMTLEEAVELVKKAIDSAIERDLSSGGGVDVAVITKDGVEE 187 (189)
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcCccCCcEEEEEECCCCEEE
Confidence 8999999999999999999999999999999999999999875
Q ss_pred E
Q psy10322 254 Y 254 (261)
Q Consensus 254 ~ 254 (261)
.
T Consensus 188 ~ 188 (189)
T cd01912 188 L 188 (189)
T ss_pred c
Confidence 4
No 14
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.7e-39 Score=285.92 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=165.2
Q ss_pred CCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCc
Q psy10322 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKV 91 (261)
Q Consensus 23 ~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~ 91 (261)
+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ ++|.+++.|+++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~-----~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~ 75 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTD-----EYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVP 75 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcC-----CcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4899999999999999999999999999999999999999 99999876 8888999999999999
Q ss_pred CCHHHHHHHHHHHHhcc---ccCCcceEEEEEEEcCC-CCeEEEEECCCC-ceeecCEEEEecChHHHHHHHHhhhhccc
Q psy10322 92 MSTTSLAKMISIMMYGK---RFFPYYTSTIIAGLDPE-GKGCVYSYDPIG-HTERANFRAGGSSGALLQALLDNQVGIIQ 166 (261)
Q Consensus 92 isv~~lA~~Is~~ly~~---r~~P~~v~~IVaG~D~~-g~p~Ly~iDp~G-s~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 166 (261)
|+++.+|++|++++|.+ ++|||+|++||||||++ ++|+||++||+| ++..++++|+|+|+.+++++||+.|
T Consensus 76 i~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~---- 151 (219)
T TIGR03690 76 LTLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLY---- 151 (219)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcC----
Confidence 99999999999999764 37899999999999964 779999999999 5777899999999999999999875
Q ss_pred ccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc------
Q psy10322 167 HSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG------ 240 (261)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~------ 240 (261)
+++||.|||++++++||..+.+||..+|+.
T Consensus 152 --------------------------------------------~~~ms~eeai~l~~~al~~~~~~d~~s~~~~~~~~~ 187 (219)
T TIGR03690 152 --------------------------------------------SPDLDEDDALRVAVEALYDAADDDSATGGPDLVRGI 187 (219)
T ss_pred --------------------------------------------CCCcCHHHHHHHHHHHHHHHHhcccccCCccccccc
Confidence 889999999999999999999999877775
Q ss_pred -EEEEEEEcCCEEEE
Q psy10322 241 -VHLCAITKDGIKEY 254 (261)
Q Consensus 241 -v~i~~itkdg~~~~ 254 (261)
++|++|+++|++..
T Consensus 188 ~~ei~ii~~~g~~~l 202 (219)
T TIGR03690 188 YPTVVVITADGARRV 202 (219)
T ss_pred ccEEEEEccCceEEc
Confidence 39999999998753
No 15
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.2e-38 Score=279.36 Aligned_cols=182 Identities=18% Similarity=0.237 Sum_probs=165.2
Q ss_pred ccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHh
Q psy10322 15 HHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQM 83 (261)
Q Consensus 15 ~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~ 83 (261)
..+.+. ++|+|+|||+++||||||+|+|.+. .++.+++.+|||+|+ +|++|+++ ++|.+++.
T Consensus 19 yA~~av-~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~ 91 (227)
T cd03750 19 YALAAV-SSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQIT-----PHIGMVYSGMGPDFRVLVKKARKIAQQ 91 (227)
T ss_pred HHHHHH-HcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEc-----CCEEEEEeEcHHhHHHHHHHHHHHHHH
Confidence 334454 5799999999999999999999984 577888999999999 99999886 88889999
Q ss_pred hhhhcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHH
Q psy10322 84 YLHEHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLD 159 (261)
Q Consensus 84 y~~~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le 159 (261)
|++.+|++|+++.+|++|++++ |.++ .|||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||
T Consensus 92 ~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~-g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le 170 (227)
T cd03750 92 YYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEG-GPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLE 170 (227)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCC-CCEEEEECCCCCEEeeeEEEECCCCHHHHHHHH
Confidence 9999999999999999999988 4444 6899999999999965 599999999999999999999999999999999
Q ss_pred hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322 160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD 239 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~ 239 (261)
+.| +++||.|||++++++||..+.+||+ +++
T Consensus 171 ~~~------------------------------------------------~~~ms~eeai~l~~~~l~~~~~~~l-~~~ 201 (227)
T cd03750 171 KRY------------------------------------------------NEDLELEDAIHTAILTLKEGFEGQM-TEK 201 (227)
T ss_pred hhc------------------------------------------------cCCCCHHHHHHHHHHHHHHHhcccC-CCC
Confidence 986 7899999999999999999999986 799
Q ss_pred cEEEEEEEcC-CEEE
Q psy10322 240 GVHLCAITKD-GIKE 253 (261)
Q Consensus 240 ~v~i~~itkd-g~~~ 253 (261)
+++|++|+++ |.+.
T Consensus 202 ~iev~iv~~~~~~~~ 216 (227)
T cd03750 202 NIEIGICGETKGFRL 216 (227)
T ss_pred cEEEEEEECCCCEEE
Confidence 9999999986 6664
No 16
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.1e-38 Score=283.72 Aligned_cols=177 Identities=17% Similarity=0.183 Sum_probs=164.3
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+++.++.+++.+|||+|+ +|++|+++ .+|.+++.|++.++
T Consensus 28 v~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~ 102 (253)
T PTZ00246 28 INNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKID-----SHIFCAVAGLTADANILINQCRLYAQRYRYTYG 102 (253)
T ss_pred HHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEec-----CCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence 367999999999999999999999999888778899999999 99999876 77778888999999
Q ss_pred CcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
.+++++.+++.++++++. + ++|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus 103 ~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~--- 179 (253)
T PTZ00246 103 EPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEW--- 179 (253)
T ss_pred CCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhc---
Confidence 999999999999988643 2 478999999999999767799999999999999999999999999999999976
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++|+.|||++++++||..+.+||..++++++|++
T Consensus 180 ---------------------------------------------~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~i 214 (253)
T PTZ00246 180 ---------------------------------------------KEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGI 214 (253)
T ss_pred ---------------------------------------------cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Confidence 88999999999999999999999999999999999
Q ss_pred EEcCC
Q psy10322 246 ITKDG 250 (261)
Q Consensus 246 itkdg 250 (261)
|+++|
T Consensus 215 i~~~~ 219 (253)
T PTZ00246 215 LSHGE 219 (253)
T ss_pred EecCC
Confidence 99986
No 17
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-37 Score=278.47 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=157.4
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCC-CCeEEEehH-----------HHHHHHHhhhhhcCC-c
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRP-TYNFLMIFT-----------ITILPFQMYLHEHNK-V 91 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~-~d~i~~~~s-----------~lr~~~~~y~~~~g~-~ 91 (261)
|-+|||+++||||||+|+|.+.+.... ++.+|||+|+ .| .+|++|+.+ ++|.+++.|++++|+ +
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~l~~~-~~~~KI~~I~--~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~ 77 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAGVDNI-STYRKMFVFS--VPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNA 77 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCCCccc-cccceEEEec--CCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCC
Confidence 358999999999999999998885444 4799999994 11 157999876 889999999999999 8
Q ss_pred CCHHHHHHHHHHHHhc----cc------cCCcceEEEEEEEcCCCCeEEEEECCCCceeec----CEEEEecChHHHHHH
Q psy10322 92 MSTTSLAKMISIMMYG----KR------FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA----NFRAGGSSGALLQAL 157 (261)
Q Consensus 92 isv~~lA~~Is~~ly~----~r------~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~----~~~a~G~g~~~~~~~ 157 (261)
|+++.+|+++++++++ +. .|||+|++||||||++++|+||++||+|++.++ +|.|+|. +.+++++
T Consensus 78 ~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~ 156 (236)
T cd03765 78 PTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPI 156 (236)
T ss_pred CCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHH
Confidence 9999999999998654 12 479999999999997667999999999999998 5689996 6999999
Q ss_pred HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q psy10322 158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYT 237 (261)
Q Consensus 158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~ 237 (261)
||++| +++||+|||++++++||.++++||..+
T Consensus 157 Lek~y------------------------------------------------k~~ms~eeai~la~~al~~a~~rd~~s 188 (236)
T cd03765 157 LDRVI------------------------------------------------TPDTSLEDAAKCALVSMDSTMRSNLSV 188 (236)
T ss_pred HHHhc------------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 99987 889999999999999999999999999
Q ss_pred CCcEEEEEEEcCCEEE
Q psy10322 238 GDGVHLCAITKDGIKE 253 (261)
Q Consensus 238 g~~v~i~~itkdg~~~ 253 (261)
|++|+|++|+|+|+++
T Consensus 189 g~~iev~vI~k~G~~~ 204 (236)
T cd03765 189 GPPLDLLVYERDSLQV 204 (236)
T ss_pred CCCEEEEEEECCCeee
Confidence 9999999999999987
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.7e-38 Score=274.69 Aligned_cols=177 Identities=17% Similarity=0.243 Sum_probs=162.9
Q ss_pred cccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhh
Q psy10322 16 HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMY 84 (261)
Q Consensus 16 ~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y 84 (261)
.+++. ++|+|+|||+++||||||+|+|.+.+.++.+++.+|||+|+ +|++|+++ ++|.+++.|
T Consensus 22 a~~a~-~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 95 (213)
T cd03752 22 AMEAI-SHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKID-----DHIACAVAGITSDANILINYARLIAQRY 95 (213)
T ss_pred HHHHH-hcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEec-----CCEEEEEecChHhHHHHHHHHHHHHHHH
Confidence 34454 67999999999999999999999999877778999999999 99999886 889999999
Q ss_pred hhhcCCcCCHHHHHHHHHHHH--hcc--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHh
Q psy10322 85 LHEHNKVMSTTSLAKMISIMM--YGK--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDN 160 (261)
Q Consensus 85 ~~~~g~~isv~~lA~~Is~~l--y~~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~ 160 (261)
+++++++|+++.+|++|+.++ |.+ +.|||+|++||||||++.+|+||++||+|++.+++++|+|+++.+++++||+
T Consensus 96 ~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~ 175 (213)
T cd03752 96 LYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQ 175 (213)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHH
Confidence 999999999999999999876 332 4689999999999997667999999999999999999999999999999999
Q ss_pred hhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322 161 QVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG 240 (261)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~ 240 (261)
.| +++||.|||++++++||..+.+||..++++
T Consensus 176 ~y------------------------------------------------~~~ms~eea~~l~~~al~~~~~r~~~~~~~ 207 (213)
T cd03752 176 DY------------------------------------------------KDDMTLEEALALAVKVLSKTMDSTKLTSEK 207 (213)
T ss_pred hc------------------------------------------------cCCCCHHHHHHHHHHHHHHHHhccCCCCCc
Confidence 86 899999999999999999999999999999
Q ss_pred EEEEEE
Q psy10322 241 VHLCAI 246 (261)
Q Consensus 241 v~i~~i 246 (261)
++|++|
T Consensus 208 ~ei~~~ 213 (213)
T cd03752 208 LEFATL 213 (213)
T ss_pred EEEEEC
Confidence 999875
No 19
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.3e-37 Score=273.68 Aligned_cols=183 Identities=21% Similarity=0.257 Sum_probs=164.7
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
+++. ++|+|+|||+++||||||+|+|.+. .++..++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 23 ~~av-~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~ 95 (224)
T TIGR03633 23 REAV-KRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKID-----DHIGAATSGLVADARVLIDRARIEAQINR 95 (224)
T ss_pred HHHH-HcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEEC-----CCEEEEEeecHHhHHHHHHHHHHHHHHHH
Confidence 4454 5799999999999999999999985 466678999999999 99999876 7788889999
Q ss_pred hhcCCcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322 86 HEHNKVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~ 161 (261)
+.++++++++.+|++++++++. + +.|||+|++||||+| +++|+||++||.|++.+++++|+|+|+.+++++||+.
T Consensus 96 ~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d-~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~ 174 (224)
T TIGR03633 96 LTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVD-DGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKE 174 (224)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEe-CCcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHh
Confidence 9999999999999999998743 3 367999999999999 4679999999999999999999999999999999997
Q ss_pred hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322 162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v 241 (261)
| +++|+.|||++++++||..+.+ |+.+++++
T Consensus 175 ~------------------------------------------------~~~~~~eeai~l~~~al~~~~~-d~~~~~~i 205 (224)
T TIGR03633 175 Y------------------------------------------------REDLSLDEAIELALKALYSAVE-DKLTPENV 205 (224)
T ss_pred c------------------------------------------------cCCCCHHHHHHHHHHHHHHHhc-ccCCCCcE
Confidence 5 8999999999999999999888 89999999
Q ss_pred EEEEEEcCCEEEEee
Q psy10322 242 HLCAITKDGIKEYNF 256 (261)
Q Consensus 242 ~i~~itkdg~~~~~~ 256 (261)
+|++|+++|...+.+
T Consensus 206 ~i~ii~~~g~~~~~~ 220 (224)
T TIGR03633 206 EVAYITVEDKKFRKL 220 (224)
T ss_pred EEEEEEcCCCcEEEC
Confidence 999999999544433
No 20
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-37 Score=274.44 Aligned_cols=179 Identities=20% Similarity=0.273 Sum_probs=161.1
Q ss_pred ccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHH
Q psy10322 13 IQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPF 81 (261)
Q Consensus 13 ~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~ 81 (261)
.+..++++.++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+ +|++|+++ ++|.++
T Consensus 18 veya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~ 91 (215)
T cd03754 18 VEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRIT-----DEIGCVMTGMIADSRSQVQRARYEA 91 (215)
T ss_pred HHhHHHHHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEc-----CCEEEEEEechhhHHHHHHHHHHHH
Confidence 45556777667889999999999999999999876 45556889999999 99999876 889999
Q ss_pred HhhhhhcCCcCCHHHHHHHHHHH--Hhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322 82 QMYLHEHNKVMSTTSLAKMISIM--MYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL 157 (261)
Q Consensus 82 ~~y~~~~g~~isv~~lA~~Is~~--ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~ 157 (261)
+.|+++++++|+++.+|++++++ +|.++ .|||+|++|+||||++++|+||++||+|++.+++++|+|+|+.+++++
T Consensus 92 ~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~ 171 (215)
T cd03754 92 AEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNF 171 (215)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHH
Confidence 99999999999999999999997 56544 579999999999998777999999999999999999999999999999
Q ss_pred HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CC--CHHHHHHHHHHHHHHHHhc
Q psy10322 158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PV--PLEKAISVVKDAFTAAAER 233 (261)
Q Consensus 158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--s~eea~~l~~~al~~~~~r 233 (261)
||++| ++ +| |.|||++++++||..+.+|
T Consensus 172 Le~~~------------------------------------------------~~~~~~~~s~eeai~l~~~al~~~~~r 203 (215)
T cd03754 172 LEKKL------------------------------------------------KKKPDLIESYEETVELAISCLQTVLST 203 (215)
T ss_pred HHHHh------------------------------------------------ccccccCCCHHHHHHHHHHHHHHHhcc
Confidence 99987 34 57 9999999999999999999
Q ss_pred ccCCCCcEEEEEE
Q psy10322 234 DIYTGDGVHLCAI 246 (261)
Q Consensus 234 d~~~g~~v~i~~i 246 (261)
|.. ++.++|++|
T Consensus 204 d~~-~~~~ei~~~ 215 (215)
T cd03754 204 DFK-ATEIEVGVV 215 (215)
T ss_pred cCC-CCcEEEEEC
Confidence 976 999999875
No 21
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=4.1e-37 Score=262.79 Aligned_cols=173 Identities=32% Similarity=0.460 Sum_probs=158.1
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCC-cCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhc
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTRE-QSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEH 88 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~-~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~ 88 (261)
+++|+|+|||+++||||||+|+|.++|..+..++ .+|||+|+ +|++++++ +++.+++.|++.+
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~ 75 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKIN-----DNIIIGFSGLTADFQYLIRRLREEAQEYRFSY 75 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeecc-----CcceeeccccccchHHHHhhhcccchhhhhcc
Confidence 3589999999999999999999999988876555 69999999 99999876 8888999999999
Q ss_pred CCcCCHHHHHHHHHHH----HhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeec-CEEEEecChHHHHHHHHhhhh
Q psy10322 89 NKVMSTTSLAKMISIM----MYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA-NFRAGGSSGALLQALLDNQVG 163 (261)
Q Consensus 89 g~~isv~~lA~~Is~~----ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~-~~~a~G~g~~~~~~~Le~~~~ 163 (261)
+.+++++.+++.++++ ++..+++|++|++|+||||++++|+||.+||.|++.++ ++.|+|+|+.+++++||+.|
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~- 154 (190)
T PF00227_consen 76 GRPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLY- 154 (190)
T ss_dssp SSGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHH-
T ss_pred CccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhc-
Confidence 9999999666655554 45556899999999999998888999999999999999 69999999999999999987
Q ss_pred cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEE
Q psy10322 164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL 243 (261)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i 243 (261)
+++||.|||++++++||+.+.+||..++++++|
T Consensus 155 -----------------------------------------------~~~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v 187 (190)
T PF00227_consen 155 -----------------------------------------------KPDLSLEEAIELALKALKEAIDRDILSGDNIEV 187 (190)
T ss_dssp -----------------------------------------------TTTSSHHHHHHHHHHHHHHHHHHBTTSTSEEEE
T ss_pred -----------------------------------------------cCCCCHHHHHHHHHHHHHHHHhhCCccCCeEEE
Confidence 899999999999999999999999999999999
Q ss_pred EEE
Q psy10322 244 CAI 246 (261)
Q Consensus 244 ~~i 246 (261)
++|
T Consensus 188 ~vi 190 (190)
T PF00227_consen 188 AVI 190 (190)
T ss_dssp EEE
T ss_pred EEC
Confidence 987
No 22
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.6e-37 Score=269.04 Aligned_cols=172 Identities=19% Similarity=0.275 Sum_probs=157.5
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
++++ ++|+|+|||+++||||||+|+|.+.. ++..++.+|||+|+ +|++|+++ ++|.+++.|+
T Consensus 21 ~~av-~~G~t~Igik~~dgVvlaad~~~~~~-~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (207)
T cd03755 21 QEAV-RKGTTAVGVRGKDCVVLGVEKKSVAK-LQDPRTVRKICMLD-----DHVCLAFAGLTADARVLINRARLECQSHR 93 (207)
T ss_pred HHHH-HcCCCEEEEEeCCEEEEEEecCCCCc-ccCCCccCcEEEEC-----CCEEEEEecchhhHHHHHHHHHHHHHHHH
Confidence 3444 57999999999999999999997765 56677899999999 99999886 8889999999
Q ss_pred hhcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322 86 HEHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~ 161 (261)
++++++|+++.+|+++++++ |.+| .|||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.
T Consensus 94 ~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~ 173 (207)
T cd03755 94 LTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKN 173 (207)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhh
Confidence 99999999999999999998 5554 6899999999999987789999999999999999999999999999999998
Q ss_pred hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322 162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v 241 (261)
| +++|+.|||++++++||..+.+ .+++++
T Consensus 174 ~------------------------------------------------~~~ms~eeai~l~~~~l~~~~~---~~~~~~ 202 (207)
T cd03755 174 Y------------------------------------------------KEEMTRDDTIKLAIKALLEVVQ---SGSKNI 202 (207)
T ss_pred c------------------------------------------------cCCCCHHHHHHHHHHHHHHHhC---CCCCeE
Confidence 6 8999999999999999999997 678999
Q ss_pred EEEEE
Q psy10322 242 HLCAI 246 (261)
Q Consensus 242 ~i~~i 246 (261)
||++|
T Consensus 203 e~~~~ 207 (207)
T cd03755 203 ELAVM 207 (207)
T ss_pred EEEEC
Confidence 99985
No 23
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=8.2e-37 Score=267.36 Aligned_cols=174 Identities=21% Similarity=0.286 Sum_probs=159.6
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
+.+. ++|+|+|||+|+||||||+|+|.+.+ ++..++.+|||+|+ +|++++.+ .++.+++.|+
T Consensus 21 ~~~~-~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~ 93 (209)
T cd01911 21 LEAV-KNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKID-----DHIGCAVAGLTADARVLVNRARVEAQNYR 93 (209)
T ss_pred HHHH-HcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEec-----CCeEEEeccCcHhHHHHHHHHHHHHHHHH
Confidence 4454 57999999999999999999999976 55668999999999 99999886 7788888999
Q ss_pred hhcCCcCCHHHHHHHHHHHHh--cc--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322 86 HEHNKVMSTTSLAKMISIMMY--GK--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~ly--~~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~ 161 (261)
+++|++|+++.+|++++++++ .+ +.|||+|++||||||++++|+||++||.|++.+++++|+|+|+.+++++||+.
T Consensus 94 ~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~ 173 (209)
T cd01911 94 YTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKR 173 (209)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHh
Confidence 999999999999999999884 33 36799999999999987789999999999999999999999999999999997
Q ss_pred hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322 162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v 241 (261)
| +++|+.|||++++++||..+.+||+ +++.+
T Consensus 174 ~------------------------------------------------~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~ 204 (209)
T cd01911 174 Y------------------------------------------------KKDLTLEEAIKLALKALKEVLEEDK-KAKNI 204 (209)
T ss_pred c------------------------------------------------ccCCCHHHHHHHHHHHHHHHHhccC-CCCcE
Confidence 5 8999999999999999999999999 99999
Q ss_pred EEEEE
Q psy10322 242 HLCAI 246 (261)
Q Consensus 242 ~i~~i 246 (261)
+|+++
T Consensus 205 ~i~i~ 209 (209)
T cd01911 205 EIAVV 209 (209)
T ss_pred EEEEC
Confidence 99875
No 24
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.3e-36 Score=271.77 Aligned_cols=179 Identities=21% Similarity=0.200 Sum_probs=162.0
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+. .++..++.+|||+|+ +|++|+++ +++.+++.|++.++
T Consensus 33 v~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~ 106 (241)
T PRK03996 33 VKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKID-----DHIGAASAGLVADARVLIDRARVEAQINRLTYG 106 (241)
T ss_pred HHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEc-----CCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46799999999999999999999985 466678999999999 99999886 77889999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++++++.+|++++++++.+ +.|||+|++||||||.+ +|+||++||.|++.+++++|+|+|+..++++||+.|
T Consensus 107 ~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~-gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~--- 182 (241)
T PRK03996 107 EPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDG-GPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNY--- 182 (241)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCC-cCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhc---
Confidence 9999999999999988533 36899999999999964 599999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++|+.|||++++++||..+.++ ..++++++|++
T Consensus 183 ---------------------------------------------~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~i 216 (241)
T PRK03996 183 ---------------------------------------------KEDLSLEEAIELALKALAKANEG-KLDPENVEIAY 216 (241)
T ss_pred ---------------------------------------------ccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEE
Confidence 89999999999999999999886 46799999999
Q ss_pred EEcCCEEEEe
Q psy10322 246 ITKDGIKEYN 255 (261)
Q Consensus 246 itkdg~~~~~ 255 (261)
|+++|...+.
T Consensus 217 i~~~~~~~~~ 226 (241)
T PRK03996 217 IDVETKKFRK 226 (241)
T ss_pred EECCCCcEEE
Confidence 9999864443
No 25
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.8e-36 Score=257.14 Aligned_cols=169 Identities=27% Similarity=0.397 Sum_probs=160.1
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.+.+..+..++.+|||+|+ ++++++.+ .++.++..|+++++++++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~-----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 75 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKID-----DHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIP 75 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEEC-----CCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 58999999999999999999999887789999999999 99999876 788899999999999999
Q ss_pred HHHHHHHHHHHHhcccc--CCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccc
Q psy10322 94 TTSLAKMISIMMYGKRF--FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQ 171 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~--~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 171 (261)
++.+++++++++|.++. +||+|++||||||.+++|+||.+||.|++.+++++|+|+++.+++++||+.|
T Consensus 76 ~~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~--------- 146 (182)
T cd01906 76 VEALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLY--------- 146 (182)
T ss_pred HHHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHc---------
Confidence 99999999999998875 9999999999999867899999999999999999999999999999999986
Q ss_pred hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322 172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI 246 (261)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i 246 (261)
+++||.|||++++++||..+.+||..+++.++|++|
T Consensus 147 ---------------------------------------~~~~s~~ea~~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 147 ---------------------------------------KPDMTLEEAIELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred ---------------------------------------cCCCCHHHHHHHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 789999999999999999999999999999999875
No 26
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-36 Score=265.89 Aligned_cols=171 Identities=20% Similarity=0.256 Sum_probs=157.5
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 25 v~~G~t~igik~~dgvvla~d~~~~~~-~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~ 98 (211)
T cd03756 25 VKRGTTALGIKCKEGVVLAVDKRITSK-LVEPESIEKIYKID-----DHVGAATSGLVADARVLIDRARVEAQIHRLTYG 98 (211)
T ss_pred HHcCCCEEEEEECCEEEEEEeccCCCc-ccCCCccceEEEEc-----CCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 367999999999999999999999754 56678999999999 99999876 78889999999999
Q ss_pred CcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++++++.+|++++++++. + +.|||+|++||||||+ ++|+||++||.|++.+++++|+|+|+.+++++||+.|
T Consensus 99 ~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~--- 174 (211)
T cd03756 99 EPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEY--- 174 (211)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhc---
Confidence 999999999999998744 3 4689999999999996 4699999999999999999999999999999999975
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++|++|||++++++||..+.++|. ++++++|++
T Consensus 175 ---------------------------------------------~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~i 208 (211)
T cd03756 175 ---------------------------------------------KEDMSLEEAIELALKALYAALEENE-TPENVEIAY 208 (211)
T ss_pred ---------------------------------------------cCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEE
Confidence 8999999999999999999999887 899999999
Q ss_pred EE
Q psy10322 246 IT 247 (261)
Q Consensus 246 it 247 (261)
|+
T Consensus 209 i~ 210 (211)
T cd03756 209 VT 210 (211)
T ss_pred Ee
Confidence 97
No 27
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-36 Score=266.16 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=159.1
Q ss_pred cccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHH
Q psy10322 14 QHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQ 82 (261)
Q Consensus 14 ~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~ 82 (261)
+..+++. ++|+|+|||+++||||||+|+|.+.+ ..++.+|||+|+ +|++|+++ +++.+++
T Consensus 18 eya~~av-~~G~t~IgIk~~dgVvlaad~r~~~~---l~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~ 88 (211)
T cd03749 18 EYAMEAV-KQGSATVGLKSKTHAVLVALKRATSE---LSSYQKKIFKVD-----DHIGIAIAGLTADARVLSRYMRQECL 88 (211)
T ss_pred HHHHHHH-hcCCCEEEEEeCCEEEEEEeccCccc---cCCccccEEEeC-----CCEEEEEEeChHhHHHHHHHHHHHHH
Confidence 3445565 57999999999999999999998776 245779999999 99999886 8899999
Q ss_pred hhhhhcCCcCCHHHHHHHHHHHHhc--c--ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHH
Q psy10322 83 MYLHEHNKVMSTTSLAKMISIMMYG--K--RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALL 158 (261)
Q Consensus 83 ~y~~~~g~~isv~~lA~~Is~~ly~--~--r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~L 158 (261)
.|+++++++|+++.+|++++++++. + +.|||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++|
T Consensus 89 ~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~-gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~L 167 (211)
T cd03749 89 NYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDES-GPHLFQTCPSGNYFEYKATSIGARSQSARTYL 167 (211)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCC-CCeEEEECCCcCEeeeeEEEECCCcHHHHHHH
Confidence 9999999999999999999998754 2 46899999999999965 59999999999999999999999999999999
Q ss_pred HhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhccc-CC
Q psy10322 159 DNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDI-YT 237 (261)
Q Consensus 159 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~-~~ 237 (261)
|++| + ++++||.|||+++++++|+.++++|. .+
T Consensus 168 e~~~---------------------------------------~-------~~~~ms~ee~i~~~~~~l~~~~~~~~~~~ 201 (211)
T cd03749 168 ERHF---------------------------------------E-------EFEDCSLEELIKHALRALRETLPGEQELT 201 (211)
T ss_pred HHhh---------------------------------------c-------cccCCCHHHHHHHHHHHHHHHhccCCCCC
Confidence 9987 0 03699999999999999999999997 88
Q ss_pred CCcEEEEEEE
Q psy10322 238 GDGVHLCAIT 247 (261)
Q Consensus 238 g~~v~i~~it 247 (261)
+++|||++|+
T Consensus 202 ~~~iei~ii~ 211 (211)
T cd03749 202 IKNVSIAIVG 211 (211)
T ss_pred CCcEEEEEEC
Confidence 9999999984
No 28
>KOG0180|consensus
Probab=100.00 E-value=1.5e-36 Score=256.74 Aligned_cols=191 Identities=27% Similarity=0.420 Sum_probs=182.7
Q ss_pred cccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhh
Q psy10322 18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLH 86 (261)
Q Consensus 18 ~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~ 86 (261)
++...||+++||+++||||.||+|.|+...+...+.+.+|||+++ |+++++++ +++.+.++|++
T Consensus 2 ~i~synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~ig-----dr~y~GL~glatDvqtl~~~~~fr~nLy~l 76 (204)
T KOG0180|consen 2 SIMSYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIG-----DRLYLGLTGLATDVQTLLERLRFRKNLYEL 76 (204)
T ss_pred cceeecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecC-----CeeEEeccccchhHHHHHHHHHHHHhHHHh
Confidence 456779999999999999999999999988888899999999999 99999886 77888899999
Q ss_pred hcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhhcc
Q psy10322 87 EHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 87 ~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++++.|.|+.+++++|.++|++|+.||.+..+|||+|++++|+|+.+|..|+... .+|+++|.++..+.+++|..|
T Consensus 77 re~R~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly--- 153 (204)
T KOG0180|consen 77 REEREIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALY--- 153 (204)
T ss_pred hhhcccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhc---
Confidence 9999999999999999999999999999999999999999999999999999865 789999999999999999875
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+|||.+||.++.+.+||..+.+||+.+|++..+++
T Consensus 154 ---------------------------------------------~pnmepd~LFetisQa~Lna~DRDalSGwGa~vyi 188 (204)
T KOG0180|consen 154 ---------------------------------------------EPNMEPDELFETISQALLNAVDRDALSGWGAVVYI 188 (204)
T ss_pred ---------------------------------------------CCCCCHHHHHHHHHHHHHhHhhhhhhccCCeEEEE
Confidence 89999999999999999999999999999999999
Q ss_pred EEcCCEEEEeeccCCC
Q psy10322 246 ITKDGIKEYNFPLRKD 261 (261)
Q Consensus 246 itkdg~~~~~~~~r~~ 261 (261)
|+||.+.++.++.|+|
T Consensus 189 I~kdkv~~r~lK~RmD 204 (204)
T KOG0180|consen 189 ITKDKVTKRTLKGRMD 204 (204)
T ss_pred EccchhhhhhhhhcCC
Confidence 9999999999999998
No 29
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.2e-36 Score=265.43 Aligned_cols=171 Identities=13% Similarity=0.137 Sum_probs=155.3
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.++. ++..++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 27 ~~~G~tvIgik~kdgVvla~d~r~~~~-~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~ 100 (212)
T cd03751 27 VENSGTAIGIRCKDGVVLAVEKLVTSK-LYEPGSNKRIFNVD-----RHIGIAVAGLLADGRHLVSRAREEAENYRDNYG 100 (212)
T ss_pred HhcCCCEEEEEeCCEEEEEEEcccccc-ccCcchhcceeEec-----CcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHC
Confidence 367999999999999999999999864 55567899999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|++|+++++.+ ..|||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus 101 ~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~-gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~--- 176 (212)
T cd03751 101 TPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSD-GPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLK--- 176 (212)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCC-cCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhc---
Confidence 9999999999999987542 36899999999999954 599999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++||.|||+++++++|..+++-+...+.+|||.+
T Consensus 177 ---------------------------------------------~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~ 211 (212)
T cd03751 177 ---------------------------------------------FSELTCREAVKEAAKIIYIVHDEIKDKAFELELSW 211 (212)
T ss_pred ---------------------------------------------cCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEE
Confidence 89999999999999999999996667788999887
Q ss_pred E
Q psy10322 246 I 246 (261)
Q Consensus 246 i 246 (261)
+
T Consensus 212 ~ 212 (212)
T cd03751 212 V 212 (212)
T ss_pred C
Confidence 4
No 30
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-35 Score=259.72 Aligned_cols=173 Identities=17% Similarity=0.221 Sum_probs=156.4
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
+++. ++|+|+|||+++||||||+|+|.+.+ ++..++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 21 ~~a~-~~G~t~igik~~dgVvlaad~r~~~~-~~~~~~~~KI~~I~-----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~ 93 (213)
T cd03753 21 IEAI-KLGSTAIGIKTKEGVVLAVEKRITSP-LMEPSSVEKIMEID-----DHIGCAMSGLIADARTLIDHARVEAQNHR 93 (213)
T ss_pred HHHH-hcCCCEEEEEeCCEEEEEEecccCCc-CcCCCccceEEEEc-----CCEEEEEecCHHHHHHHHHHHHHHHHHHH
Confidence 3443 67999999999999999999999875 45667899999999 99999886 7888999999
Q ss_pred hhcCCcCCHHHHHHHHHHHHhcc---------ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHH
Q psy10322 86 HEHNKVMSTTSLAKMISIMMYGK---------RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQA 156 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~ly~~---------r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~ 156 (261)
+.++++|+++.+++++++++|.+ +.|||+|++||||||+ ++|+||++||.|++.+++++|+|+++.++.+
T Consensus 94 ~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~ 172 (213)
T cd03753 94 FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGAQS 172 (213)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHHHH
Confidence 99999999999999999998652 1489999999999996 4599999999999999999999999999999
Q ss_pred HHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccC
Q psy10322 157 LLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIY 236 (261)
Q Consensus 157 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~ 236 (261)
+||+.| +++||.|||++++++||+.+.+++ .
T Consensus 173 ~L~~~~------------------------------------------------~~~ls~eeai~l~~~~l~~~~~~~-~ 203 (213)
T cd03753 173 SLQEKY------------------------------------------------HKDMTLEEAEKLALSILKQVMEEK-L 203 (213)
T ss_pred HHHhhc------------------------------------------------cCCCCHHHHHHHHHHHHHHHhccc-C
Confidence 999986 789999999999999999998876 6
Q ss_pred CCCcEEEEEE
Q psy10322 237 TGDGVHLCAI 246 (261)
Q Consensus 237 ~g~~v~i~~i 246 (261)
++++++|++|
T Consensus 204 ~~~~~ei~~~ 213 (213)
T cd03753 204 NSTNVELATV 213 (213)
T ss_pred CCCcEEEEEC
Confidence 7899999975
No 31
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=3.2e-34 Score=255.79 Aligned_cols=183 Identities=14% Similarity=0.161 Sum_probs=159.1
Q ss_pred hhhhcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH----------
Q psy10322 6 KQILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT---------- 75 (261)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s---------- 75 (261)
+|+........++.+ ++|+|+|||+++||||||+|++ +++.+|||+|+ ||++|+++
T Consensus 10 ~~~~~~~~EYA~kav-~~g~T~VGIk~kdgVVLaaek~--------~~~~~KI~~I~-----d~ig~~~sG~~~D~~~lv 75 (228)
T TIGR03691 10 EQIMRDRAELARKGI-ARGRSVVVLTYADGILFVAENP--------SRSLHKISELY-----DRIGFAAVGKYNEFENLR 75 (228)
T ss_pred HHHHhhHHHHHHHHH-HcCCcEEEEEeCCeEEEEEecC--------CCCcCcEEEec-----CCEEEEEcCCHHHHHHHH
Confidence 344555556667776 5699999999999999999996 24689999999 99999887
Q ss_pred -HHHHHHHhhhhhcC-CcCCHHHHHHHHHHHHhcc---ccCCcceEEEEEEEcC-CCCeEEEEECCCCceeecC-EEEEe
Q psy10322 76 -ITILPFQMYLHEHN-KVMSTTSLAKMISIMMYGK---RFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTERAN-FRAGG 148 (261)
Q Consensus 76 -~lr~~~~~y~~~~g-~~isv~~lA~~Is~~ly~~---r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~~~-~~a~G 148 (261)
.++.+++.|++.++ .+++++.+|+++++.++.. +.|||+|++|+||||+ +.+|+||++||+|++.+++ ++|+|
T Consensus 76 ~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG 155 (228)
T TIGR03691 76 RAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMG 155 (228)
T ss_pred HHHHHHHHHHhhhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEEC
Confidence 56677888888887 6899999999888877532 5789999999999986 4669999999999999976 89999
Q ss_pred cChHHHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHH
Q psy10322 149 SSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFT 228 (261)
Q Consensus 149 ~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~ 228 (261)
+|+..++++||++| +++||.|||++++++||.
T Consensus 156 ~gs~~a~~~Lek~y------------------------------------------------~~~ms~eeai~la~~aL~ 187 (228)
T TIGR03691 156 GTTEPIATALKESY------------------------------------------------RDGLSLADALGLAVQALR 187 (228)
T ss_pred CChHHHHHHHHHhc------------------------------------------------CCCCCHHHHHHHHHHHHH
Confidence 99999999999987 789999999999999999
Q ss_pred HHH--hcccCCCCcEEEEEEEcCC
Q psy10322 229 AAA--ERDIYTGDGVHLCAITKDG 250 (261)
Q Consensus 229 ~~~--~rd~~~g~~v~i~~itkdg 250 (261)
++. +||..+++++||++|++++
T Consensus 188 ~~~~~~r~~~~~~~iEv~ii~k~~ 211 (228)
T TIGR03691 188 AGGNGEKRELDAASLEVAVLDRSR 211 (228)
T ss_pred HHhccccccCCccceEEEEEeCCC
Confidence 996 4778999999999999865
No 32
>KOG0185|consensus
Probab=100.00 E-value=1e-34 Score=255.35 Aligned_cols=193 Identities=18% Similarity=0.281 Sum_probs=176.0
Q ss_pred cccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-------HHHHHHHhh
Q psy10322 12 PIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-------ITILPFQMY 84 (261)
Q Consensus 12 ~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-------~lr~~~~~y 84 (261)
|.||+.+|++ +|+|+||+||+||||||||+..|+|++...++++|+|+++ ||+.++.+ ++++.+.+.
T Consensus 30 ~~qrt~~p~v-TGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVg-----dntllG~sGdisD~Q~i~r~L~~l 103 (256)
T KOG0185|consen 30 PIQRTLNPIV-TGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVG-----DNTLLGASGDISDFQYIQRVLEQL 103 (256)
T ss_pred CcccccCcee-ccceEEEEEecCceEEEecccccchhhhhhcCceeeEEec-----CceEEecCccHHHHHHHHHHHHHH
Confidence 8899999998 6999999999999999999999999999999999999999 99999987 555544433
Q ss_pred h-----hhcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322 85 L-----HEHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL 157 (261)
Q Consensus 85 ~-----~~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~ 157 (261)
. +..|+.+.|+.++++|.+.||++| +.|++.+++|||+|.+|+|+|.++|..|..++.+.+|+|.|.++++|+
T Consensus 104 ~iedn~~~Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~ 183 (256)
T KOG0185|consen 104 VIEDNRLDDGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPL 183 (256)
T ss_pred HhcccccccccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHH
Confidence 3 445589999999999999999987 789999999999999899999999999999999999999999999999
Q ss_pred HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q psy10322 158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYT 237 (261)
Q Consensus 158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~ 237 (261)
|++.+ ++| .++++.|||..++.+||+...+||+.+
T Consensus 184 lR~~~---------------------------------------~~k------~~~~s~eeA~~li~~cMrVL~YRD~ra 218 (256)
T KOG0185|consen 184 LRDEW---------------------------------------EKK------GEDLSREEAEALIEKCMRVLYYRDARA 218 (256)
T ss_pred HHHhh---------------------------------------hcc------chhhHHHHHHHHHHHHHHHHhcccccc
Confidence 99976 211 478999999999999999999999999
Q ss_pred CCcEEEEEEEcCCEEEEe
Q psy10322 238 GDGVHLCAITKDGIKEYN 255 (261)
Q Consensus 238 g~~v~i~~itkdg~~~~~ 255 (261)
-+.+++++||++|+....
T Consensus 219 ~n~fqva~v~~eGv~i~~ 236 (256)
T KOG0185|consen 219 SNEFQVATVDEEGVTISK 236 (256)
T ss_pred ccceEEEEEcccceEecC
Confidence 999999999999997653
No 33
>KOG0174|consensus
Probab=100.00 E-value=1.3e-34 Score=248.84 Aligned_cols=184 Identities=27% Similarity=0.355 Sum_probs=175.3
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|++|++|+|||||++|+|.+.|.++.+|-.+|+.+|+ |+++||.| .++..+..|..+++
T Consensus 16 vstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~it-----D~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~ 90 (224)
T KOG0174|consen 16 VSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPIT-----DNIYCCRSGSAADTQAIADIVRYHLELYTIQEN 90 (224)
T ss_pred cccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceecc-----ccEEEecCCchhhHHHHHHHHHHHHHHhhhhcC
Confidence 578999999999999999999999999999999999999999 99999986 88899999999999
Q ss_pred CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322 90 KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS 169 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 169 (261)
+++.+...|+.+++++|++|-. +.+++||||||++.++++|.+...|+..+.+++..|+||.++++++|.+|
T Consensus 91 ~~p~v~~aA~l~r~~~Y~~re~-L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~------- 162 (224)
T KOG0174|consen 91 KPPLVHTAASLFREICYNYREM-LSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANW------- 162 (224)
T ss_pred CCchHHHHHHHHHHHHHhCHHh-hhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhc-------
Confidence 9999999999999999998744 77899999999988899999999999999999999999999999999975
Q ss_pred cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322 170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd 249 (261)
+++||+||++.++++|+..+++||.++|..|.+.+|+++
T Consensus 163 -----------------------------------------r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~ 201 (224)
T KOG0174|consen 163 -----------------------------------------RPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINKA 201 (224)
T ss_pred -----------------------------------------CCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccC
Confidence 999999999999999999999999999999999999999
Q ss_pred CEEEEeecc
Q psy10322 250 GIKEYNFPL 258 (261)
Q Consensus 250 g~~~~~~~~ 258 (261)
|++++.|+.
T Consensus 202 Gver~~~~~ 210 (224)
T KOG0174|consen 202 GVERRFFPG 210 (224)
T ss_pred CceEEEecC
Confidence 999998865
No 34
>KOG0177|consensus
Probab=100.00 E-value=5.3e-34 Score=243.88 Aligned_cols=178 Identities=22% Similarity=0.340 Sum_probs=169.1
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
.+++||++.|+|++|+||...++.++...+.+|+++|+ +++.|+.+ ++.+++++|++++|.+++
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls-----~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLS 76 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLS-----DHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELS 76 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEec-----cceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCC
Confidence 48999999999999999999999999999999999999 99999765 999999999999999999
Q ss_pred HHHHHHHHHHHHhcc-c-cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccc
Q psy10322 94 TTSLAKMISIMMYGK-R-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQ 171 (261)
Q Consensus 94 v~~lA~~Is~~ly~~-r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 171 (261)
|+.+|+++++.+... | .+||.|++++||+|++.+|.||++|..|+..+.++++.|.++.++.++||+.|
T Consensus 77 p~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y--------- 147 (200)
T KOG0177|consen 77 PSAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYY--------- 147 (200)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhh---------
Confidence 999999999998653 5 57999999999999977799999999999999999999999999999999987
Q ss_pred hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322 172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251 (261)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~ 251 (261)
+|+||.|||+++.++|+.++.+|-..+-.++.+.+|+|||+
T Consensus 148 ---------------------------------------~pdmt~eea~~lmkKCv~El~kRlvin~~~f~v~IVdkdGi 188 (200)
T KOG0177|consen 148 ---------------------------------------KPDMTIEEALDLMKKCVLELKKRLVINLPGFIVKIVDKDGI 188 (200)
T ss_pred ---------------------------------------CCCCCHHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCc
Confidence 89999999999999999999999999999999999999999
Q ss_pred EEEe
Q psy10322 252 KEYN 255 (261)
Q Consensus 252 ~~~~ 255 (261)
+..+
T Consensus 189 r~~~ 192 (200)
T KOG0177|consen 189 RKLD 192 (200)
T ss_pred eecc
Confidence 8765
No 35
>KOG0176|consensus
Probab=100.00 E-value=5.2e-33 Score=239.61 Aligned_cols=176 Identities=18% Similarity=0.206 Sum_probs=160.3
Q ss_pred cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK 90 (261)
Q Consensus 22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~ 90 (261)
+.|+|.|||+.++|||||+++|++++.+ .++.++||++|+ +||+|+++ +.|.+++.|.+.||+
T Consensus 32 kLGsTaIGv~TkEgVvL~vEKritSpLm-~p~sveKi~eid-----~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e 105 (241)
T KOG0176|consen 32 KLGSTAIGVKTKEGVVLAVEKRITSPLM-EPSSVEKIVEID-----DHIGCAMSGLIADARTLVERARVETQNHWFTYGE 105 (241)
T ss_pred hcCCceeeeeccceEEEEEeccccCccc-Cchhhhhheehh-----hceeeeccccccchHHHHHHHHHHhhhceeecCC
Confidence 5799999999999999999999999854 568999999999 99999987 888899999999999
Q ss_pred cCCHHHHHHHHHHHHhcc-------c--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322 91 VMSTTSLAKMISIMMYGK-------R--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161 (261)
Q Consensus 91 ~isv~~lA~~Is~~ly~~-------r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~ 161 (261)
+|+++.+.+.++++..++ + .|||||++++||+|++ +|+||..||+|+|+++++.|+|+|+.-+++.|+++
T Consensus 106 ~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~-gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e 184 (241)
T KOG0176|consen 106 PISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDET-GPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEE 184 (241)
T ss_pred cccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCC-CceEEEeCCCCceEEecceeccccchHHHHHHHHH
Confidence 999999999999987543 2 3799999999999965 59999999999999999999999999999999998
Q ss_pred hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322 162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v 241 (261)
| .++|+++||+.++...|+.+++.- .+.++|
T Consensus 185 ~------------------------------------------------~~~ltL~ea~~~~L~iLkqVMeeK-l~~~Nv 215 (241)
T KOG0176|consen 185 Y------------------------------------------------HKDLTLKEAEKIVLKILKQVMEEK-LNSNNV 215 (241)
T ss_pred H------------------------------------------------hhcccHHHHHHHHHHHHHHHHHHh-cCccce
Confidence 8 789999999999999999999954 567899
Q ss_pred EEEEEEcC-CEEE
Q psy10322 242 HLCAITKD-GIKE 253 (261)
Q Consensus 242 ~i~~itkd-g~~~ 253 (261)
++++|++. +.+.
T Consensus 216 ev~~vt~e~~f~~ 228 (241)
T KOG0176|consen 216 EVAVVTPEGEFHI 228 (241)
T ss_pred EEEEEcccCceEe
Confidence 99999987 4443
No 36
>KOG0175|consensus
Probab=99.98 E-value=5.5e-32 Score=240.66 Aligned_cols=178 Identities=25% Similarity=0.315 Sum_probs=169.5
Q ss_pred cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK 90 (261)
Q Consensus 22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~ 90 (261)
.+|||++|++++.|||+|+|+|++.|.+|.+..+.||.+|| ++..-.++ .+..+|++|++++++
T Consensus 69 ~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn-----~ylLGTmAGgAADCqfWer~L~kecRL~eLRnke 143 (285)
T KOG0175|consen 69 AHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEIN-----PYLLGTMAGGAADCQFWERVLAKECRLHELRNKE 143 (285)
T ss_pred cCCceEEEEEecCcEEEEEeccccccceeechhhceeeeec-----hhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCc
Confidence 47999999999999999999999999999999999999999 88776554 788899999999999
Q ss_pred cCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccccc
Q psy10322 91 VMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSK 170 (261)
Q Consensus 91 ~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 170 (261)
.|+|.+.++++++++|++|...+.+...|+|||+.| |.||++|.-|+-...+..++|+|+.+++++||+.|
T Consensus 144 riSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk~G-P~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgY-------- 214 (285)
T KOG0175|consen 144 RISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDKKG-PGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGY-------- 214 (285)
T ss_pred ceehHHHHHHHHHHHhhccCcchhheeeEeeccCCC-CceEEEcCCCCEecCceEeecCCCceeEEeeccCC--------
Confidence 999999999999999999988899999999999765 99999999999999999999999999999999998
Q ss_pred chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322 171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250 (261)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg 250 (261)
+++||.|||.+|+++|+..|-.||..+|.-|.++-|++||
T Consensus 215 ----------------------------------------r~dls~eEA~~L~rrAI~hAThRDaySGG~vnlyHv~edG 254 (285)
T KOG0175|consen 215 ----------------------------------------RYDLSDEEAYDLARRAIYHATHRDAYSGGVVNLYHVKEDG 254 (285)
T ss_pred ----------------------------------------CCCCCHHHHHHHHHHHHHHHHhcccccCceEEEEEECCcc
Confidence 8999999999999999999999999999999999999999
Q ss_pred EEE
Q psy10322 251 IKE 253 (261)
Q Consensus 251 ~~~ 253 (261)
+..
T Consensus 255 W~~ 257 (285)
T KOG0175|consen 255 WVK 257 (285)
T ss_pred cee
Confidence 864
No 37
>KOG0173|consensus
Probab=99.97 E-value=7e-31 Score=233.05 Aligned_cols=180 Identities=24% Similarity=0.324 Sum_probs=165.5
Q ss_pred ccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhh
Q psy10322 19 PYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHE 87 (261)
Q Consensus 19 ~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~ 87 (261)
..+.+|+|++||.+|||||+++|+|++.|..+..++.+||+.|. ++|+||.+ .+-.+++++.+.
T Consensus 32 ~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia-----~~IyccGAGtAADte~vt~m~ss~l~Lh~l~ 106 (271)
T KOG0173|consen 32 KATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIA-----PNIYCCGAGTAADTEMVTRMISSNLELHRLN 106 (271)
T ss_pred cccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcc-----cceEEccCCchhhHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999999999999999899999999999 99999875 555677888899
Q ss_pred cCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccc
Q psy10322 88 HNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQH 167 (261)
Q Consensus 88 ~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ 167 (261)
.++.+.+-..-+++.++|+.+.. -.++.+|+||+|..| |+||++.|-|+....+|.+.|||+..+..+||..|
T Consensus 107 t~R~~rVv~A~~mlkQ~LFrYqG-~IgA~LiiGGvD~TG-pHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~----- 179 (271)
T KOG0173|consen 107 TGRKPRVVTALRMLKQHLFRYQG-HIGAALILGGVDPTG-PHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRW----- 179 (271)
T ss_pred cCCCCceeeHHHHHHHHHHHhcC-cccceeEEccccCCC-CceEEEcCCCCcCccceeeeccchHHHHHHHHHhc-----
Confidence 99999999999999999976643 388999999999877 99999999999999999999999999999999875
Q ss_pred cccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEE
Q psy10322 168 SSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247 (261)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~it 247 (261)
+++|++|||++|+.+|+.+.+..|..+|.+|.+|+|+
T Consensus 180 -------------------------------------------k~dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~ 216 (271)
T KOG0173|consen 180 -------------------------------------------KPDLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVIT 216 (271)
T ss_pred -------------------------------------------CcccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEe
Confidence 9999999999999999999999999999999999999
Q ss_pred cCCEEE
Q psy10322 248 KDGIKE 253 (261)
Q Consensus 248 kdg~~~ 253 (261)
+.++..
T Consensus 217 ~~~~~~ 222 (271)
T KOG0173|consen 217 KKGVEY 222 (271)
T ss_pred CCCccc
Confidence 887754
No 38
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.96 E-value=1.6e-28 Score=210.79 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=134.7
Q ss_pred CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCc
Q psy10322 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKV 91 (261)
Q Consensus 24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~ 91 (261)
|+|+|||+++||||||+|+|++.|.++.+++.+||++| + +|++|+++ +++.+++.|+. +
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~-----d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~-- 71 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYN-----GKVLAGFAGSTADAFTLFERFEAKLEEHQG--N-- 71 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCC-----CCEEEEEeccHHHHHHHHHHHHHHHHHccC--c--
Confidence 68999999999999999999999999999999999999 9 99999876 77888888872 2
Q ss_pred CCHHHHHHHHHHHHhcccc-CCcceEEEEEEEcCCCCeEEEEECCCCceeec--CEEEEecChHHHHHHHHhhhhccccc
Q psy10322 92 MSTTSLAKMISIMMYGKRF-FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA--NFRAGGSSGALLQALLDNQVGIIQHS 168 (261)
Q Consensus 92 isv~~lA~~Is~~ly~~r~-~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~ 168 (261)
+ ++.+|++++.+. ..+. +|+.+++|++ |. |+||++||.|++.+. ++.|+|+|+.+++++||++|
T Consensus 72 ~-~~~~a~l~~~l~-~~~~~~~l~~~~lv~--d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y------ 138 (172)
T PRK05456 72 L-LRAAVELAKDWR-TDRYLRRLEAMLIVA--DK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALL------ 138 (172)
T ss_pred c-HHHHHHHHHHHH-hccCCCccEEEEEEE--cC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhh------
Confidence 2 577777775553 2233 5888999994 43 799999999999665 89999999999999999987
Q ss_pred ccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 169 SKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDK-TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+ ++| ||++++++|+.++.+||..+|+++++-.
T Consensus 139 ------------------------------------------~~~~m---eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 139 ------------------------------------------ENTDL---SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred ------------------------------------------hcCCC---CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 7 999 9999999999999999999999998754
No 39
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.96 E-value=1.3e-27 Score=204.95 Aligned_cols=154 Identities=18% Similarity=0.184 Sum_probs=132.4
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCC-eEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTY-NFLMIFT-----------ITILPFQMYLHEHNKVM 92 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d-~i~~~~s-----------~lr~~~~~y~~~~g~~i 92 (261)
+|+|||+++||||||+|+|++.|.++.+++.+||++|+ + |++|+++ +++.+++.|+++.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~-----d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~--- 72 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLY-----NGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLL--- 72 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeC-----CCCEEEEecccHHHHHHHHHHHHHHHHHhhchHH---
Confidence 68999999999999999999999999999999999999 9 9999886 88899999988766
Q ss_pred CHHHHHHHHHHHHhccccCCcc-eEEEEEEEcCCCCeEEEEECCCCceeec--CEEEEecChHHHHHHHHhhhhcccccc
Q psy10322 93 STTSLAKMISIMMYGKRFFPYY-TSTIIAGLDPEGKGCVYSYDPIGHTERA--NFRAGGSSGALLQALLDNQVGIIQHSS 169 (261)
Q Consensus 93 sv~~lA~~Is~~ly~~r~~P~~-v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~ 169 (261)
+.+++++..++ ..+.+|+. +.+|++++ ++||.+||.|++.+. ++.|+|||+.+++++||.+|
T Consensus 73 --~~aa~l~~~l~-~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~y------- 137 (171)
T cd01913 73 --RAAVELAKDWR-TDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALL------- 137 (171)
T ss_pred --HHHHHHHHHHH-hccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhh-------
Confidence 45666655553 22455666 66666543 399999999999988 49999999999999999998
Q ss_pred cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCC-CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTP-VPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++ || +.+++++|++.|.+||+.+|++|.+-.
T Consensus 138 -----------------------------------------k~~~ms---~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 138 -----------------------------------------DHTDLS---AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred -----------------------------------------ccCCCC---HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 784 99 559999999999999999999998754
No 40
>KOG0183|consensus
Probab=99.95 E-value=7e-28 Score=209.98 Aligned_cols=175 Identities=17% Similarity=0.228 Sum_probs=159.0
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+..|+|+||++++|+|||+.+++... .+.+.+...||..++ +|+.|+++ ++|.+|+.|++..+
T Consensus 27 vrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld-----~hV~mafaGl~aDArilinrArvecqShrlt~e 100 (249)
T KOG0183|consen 27 VRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLD-----DHVVMAFAGLTADARILINRARVECQSHRLTLE 100 (249)
T ss_pred HhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeec-----ceeeEEecCCCccceeehhhHhHhhhhhhcccC
Confidence 46799999999999999999998655 467889999999999 99999987 88899999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
.+++++.++++|+.+-+.+ ..||||+|++|+|+|++|.|+||.+||+|.|++|++.|+|.++..+..+||++|
T Consensus 101 dpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y--- 177 (249)
T KOG0183|consen 101 DPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNY--- 177 (249)
T ss_pred CCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhc---
Confidence 9999999999999986433 358999999999999999999999999999999999999999999999999998
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
. .++..+.+++++|++++|.++.. ..++++++++
T Consensus 178 ------------------------------------~-------e~~~~~~~~~ikL~ir~LleVvq---s~~~nie~aV 211 (249)
T KOG0183|consen 178 ------------------------------------K-------EEAIATEGETIKLAIRALLEVVQ---SGGKNIEVAV 211 (249)
T ss_pred ------------------------------------c-------cccccccccHHHHHHHHHHHHhh---cCCCeeEEEE
Confidence 1 14568889999999999999998 5688999999
Q ss_pred EEcCC
Q psy10322 246 ITKDG 250 (261)
Q Consensus 246 itkdg 250 (261)
+++++
T Consensus 212 m~~~~ 216 (249)
T KOG0183|consen 212 MKRRK 216 (249)
T ss_pred EecCC
Confidence 99877
No 41
>KOG0178|consensus
Probab=99.95 E-value=9.8e-28 Score=208.67 Aligned_cols=180 Identities=17% Similarity=0.216 Sum_probs=163.3
Q ss_pred cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK 90 (261)
Q Consensus 22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~ 90 (261)
++.+|+|||-++||||||+++|.++..+--+...+||++|+ ||++|+++ .+|..+|.|.+.+|+
T Consensus 29 s~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~-----d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e 103 (249)
T KOG0178|consen 29 SHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLN-----DNIACAVAGLTSDANVLKNYARIIAQRYLFRYGE 103 (249)
T ss_pred hhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcC-----CceEEEEecccccHHHHHHHHHHHHHHHHHHhCC
Confidence 56889999999999999999999998777778899999999 99999875 788889999999999
Q ss_pred cCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccc
Q psy10322 91 VMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQ 166 (261)
Q Consensus 91 ~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 166 (261)
+||.+.|++.++++.+.+ ..||||||++-+|||..-+.+||+.||+|++..|++.|+|.++..++.+|...|
T Consensus 104 ~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdy---- 179 (249)
T KOG0178|consen 104 EIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDY---- 179 (249)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhh----
Confidence 999999999999987432 268999999999999866699999999999999999999999999999999987
Q ss_pred ccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322 167 HSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI 246 (261)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i 246 (261)
....++.|||+.+|++.|...++.+..+.+.+|++.+
T Consensus 180 -------------------------------------------kdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~ 216 (249)
T KOG0178|consen 180 -------------------------------------------KDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATI 216 (249)
T ss_pred -------------------------------------------ccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEE
Confidence 0234679999999999999999999999999999999
Q ss_pred EcCCEEE
Q psy10322 247 TKDGIKE 253 (261)
Q Consensus 247 tkdg~~~ 253 (261)
+++.-+.
T Consensus 217 ~k~~~k~ 223 (249)
T KOG0178|consen 217 TKDCNKT 223 (249)
T ss_pred EecCCce
Confidence 9987654
No 42
>KOG0182|consensus
Probab=99.95 E-value=6.4e-27 Score=203.69 Aligned_cols=189 Identities=18% Similarity=0.225 Sum_probs=169.6
Q ss_pred ccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHH
Q psy10322 13 IQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPF 81 (261)
Q Consensus 13 ~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~ 81 (261)
.+..|.++.+.|-|+||+++||++|+++.++.+.+ +++++++..+|+|. .+|+|+++ ++|.++
T Consensus 25 VEYafkAin~~gltsVavrgkDcavvvsqKkvpDK-Lld~~tvt~~f~it-----k~ig~v~tG~~aDar~~v~rar~eA 98 (246)
T KOG0182|consen 25 VEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDK-LLDSSTVTHLFRIT-----KKIGCVITGMIADARSQVQRARYEA 98 (246)
T ss_pred eehHHHHhhcCCCceEEEcCCceEEEEecccCccc-ccccccceeEEEee-----ccceEEEecCCcchHHHHHHHHHHH
Confidence 46678888777999999999999999999999887 67888999999999 99999876 888899
Q ss_pred HhhhhhcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322 82 QMYLHEHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL 157 (261)
Q Consensus 82 ~~y~~~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~ 157 (261)
..++|.||.+||++.||++++++. |.++ +||+||.+++.|+|++.||.||.+||.|-+..+++++.|..+..+..+
T Consensus 99 a~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsf 178 (246)
T KOG0182|consen 99 AEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSF 178 (246)
T ss_pred HhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHH
Confidence 999999999999999999999975 4444 899999999999999888999999999999999999999999999999
Q ss_pred HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q psy10322 158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYT 237 (261)
Q Consensus 158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~ 237 (261)
||+.| . . +.+.+.+|++++++.||.+++.-|..
T Consensus 179 LEKk~---------------------------------------K--k-----~~~~t~~e~ve~ai~al~~sl~~Dfk- 211 (246)
T KOG0182|consen 179 LEKKY---------------------------------------K--K-----DIDLTFEETVETAISALQSSLGIDFK- 211 (246)
T ss_pred HHHhh---------------------------------------c--c-----CccchHHHHHHHHHHHHHHHHhcccC-
Confidence 99998 0 0 34588999999999999999999976
Q ss_pred CCcEEEEEEEcCCEEEE
Q psy10322 238 GDGVHLCAITKDGIKEY 254 (261)
Q Consensus 238 g~~v~i~~itkdg~~~~ 254 (261)
...+||.+++++.-+..
T Consensus 212 ~se~EVgvv~~~~p~f~ 228 (246)
T KOG0182|consen 212 SSELEVGVVTVDNPEFR 228 (246)
T ss_pred CcceEEEEEEcCCccee
Confidence 57999999998875443
No 43
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.95 E-value=8.1e-27 Score=200.02 Aligned_cols=155 Identities=19% Similarity=0.186 Sum_probs=130.9
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM 92 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i 92 (261)
+|+|||+++||||||+|+|++.|.++.+++.+||++| + +|++|+++ +++.+++.|+++.
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~-----d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~---- 71 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYN-----GKVLAGFAGSTADAFTLFERFEAKLEEYQGNL---- 71 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCC-----CCEEEEecchHHHHHHHHHHHHHHHHHccCch----
Confidence 6899999999999999999999999999999999999 8 99999886 7888888887632
Q ss_pred CHHHHHHHHHHHHhccccCCcc-eEEEEEEEcCCCCeEEEEECCCCceeec--CEEEEecChHHHHHHHHhhhhcccccc
Q psy10322 93 STTSLAKMISIMMYGKRFFPYY-TSTIIAGLDPEGKGCVYSYDPIGHTERA--NFRAGGSSGALLQALLDNQVGIIQHSS 169 (261)
Q Consensus 93 sv~~lA~~Is~~ly~~r~~P~~-v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le~~~~~~~~~~ 169 (261)
.+.++++++++. .++..|+. +.+|++|| ++||.+||.|++.+. ++.++||||.+++++||.+|
T Consensus 72 -~~~~a~l~~~~~-~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y------- 137 (171)
T TIGR03692 72 -TRAAVELAKDWR-TDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALL------- 137 (171)
T ss_pred -HHHHHHHHHHHh-hcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhh-------
Confidence 477888877742 22334444 66666543 499999999999995 69999999999999999987
Q ss_pred cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
. +++|+ |++++.+|+..|++||+.+|+++.|-.
T Consensus 138 --------------------------------~--------~~~~s---a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 138 --------------------------------R--------NTDLS---AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred --------------------------------h--------cCCCC---HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 0 35666 999999999999999999999998754
No 44
>KOG0181|consensus
Probab=99.95 E-value=4.4e-27 Score=202.58 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=164.5
Q ss_pred ccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHH
Q psy10322 13 IQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPF 81 (261)
Q Consensus 13 ~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~ 81 (261)
+.+..++. .+|.+.|||+-.||||||++++..+. +.+....+|+++|. +||+|..| ..|+.+
T Consensus 22 ieyAL~Av-~~G~~SvGi~A~nGvVlatekk~~s~-L~~~~sv~KV~~i~-----~~IG~vYSGmgpD~RvlV~~~rkiA 94 (233)
T KOG0181|consen 22 IEYALTAV-VNGQTSVGIKAANGVVLATEKKDVSP-LVDEESVRKVEKIT-----PHIGCVYSGMGPDYRVLVHKSRKIA 94 (233)
T ss_pred HHHHHHHH-hCCCCceeeeecCceEEEeccCCCCc-cchhhhhhhHhhcc-----CCcceEEecCCCceeehhhHHHHHH
Confidence 33444554 57999999999999999999988776 45668899999999 99999887 678888
Q ss_pred HhhhhhcCCcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHH
Q psy10322 82 QMYLHEHNKVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQAL 157 (261)
Q Consensus 82 ~~y~~~~g~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~ 157 (261)
++|..-|+++|++..+.+.++..|+.+ ..||||+++++||||+ ++|.||++||+|++..|+++|.|.+...+..+
T Consensus 95 e~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktF 173 (233)
T KOG0181|consen 95 EQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTF 173 (233)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHH
Confidence 899999999999999999999999653 3689999999999996 56999999999999999999999999999999
Q ss_pred HHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCC
Q psy10322 158 LDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYT 237 (261)
Q Consensus 158 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~ 237 (261)
||+.| ..++.+|+++..++-+|++..+-. .+
T Consensus 174 lEkR~------------------------------------------------~edleldd~ihtailtlkE~fege-~~ 204 (233)
T KOG0181|consen 174 LEKRY------------------------------------------------NEDLELDDAIHTAILTLKESFEGE-MT 204 (233)
T ss_pred HHHHh------------------------------------------------ccccccchHHHHHHHHHHHHhccc-cc
Confidence 99987 689999999999999999999976 46
Q ss_pred CCcEEEEEEEcCCEEEE
Q psy10322 238 GDGVHLCAITKDGIKEY 254 (261)
Q Consensus 238 g~~v~i~~itkdg~~~~ 254 (261)
.++++|.++..+|.+..
T Consensus 205 ~~nieigv~~~~~F~~l 221 (233)
T KOG0181|consen 205 AKNIEIGVCGENGFRRL 221 (233)
T ss_pred cCceEEEEecCCceeec
Confidence 89999999998887654
No 45
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.94 E-value=3.3e-25 Score=180.77 Aligned_cols=150 Identities=25% Similarity=0.316 Sum_probs=140.6
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||+|+|++.+.+......+..|+++++ ++++++++ +++.+++.|++.++.+++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~-----~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 75 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNE-----DGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPIS 75 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEec-----CCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 58999999999999999999999877678999999999 99999876 888899999999999999
Q ss_pred HHHHHHHHHHHHhccc-cCCcceEEEEEEEcCCCCeEEEEECCCCceeec-CEEEEecChHHHHHHHHhhhhcccccccc
Q psy10322 94 TTSLAKMISIMMYGKR-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA-NFRAGGSSGALLQALLDNQVGIIQHSSKQ 171 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~-~~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 171 (261)
+..+++.+++.++.++ .+|+++++||||+|+ ++|+||.+||.|++.+. +++++|+++..+.++|++.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~--------- 145 (164)
T cd01901 76 VVALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLY--------- 145 (164)
T ss_pred HHHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHh---------
Confidence 9999999999998876 489999999999997 77999999999999999 99999999999999999986
Q ss_pred hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHH
Q psy10322 172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFT 228 (261)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~ 228 (261)
+++++.+|+++++.+||.
T Consensus 146 ---------------------------------------~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 146 ---------------------------------------KPDMTLEEAVELALKALK 163 (164)
T ss_pred ---------------------------------------cCCCCHHHHHHHHHHHHh
Confidence 788999999999999985
No 46
>KOG0184|consensus
Probab=99.94 E-value=9.4e-26 Score=197.54 Aligned_cols=172 Identities=12% Similarity=0.105 Sum_probs=148.2
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+++|+||||||||||+++++-+++++++. ...+|||.|+ +|++|+++ ++|.++..|+-+|+
T Consensus 31 ven~~T~IGIk~kdGVVl~vEKli~SkLy~p-~sn~ri~~V~-----r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~ 104 (254)
T KOG0184|consen 31 VENSGTCIGIKCKDGVVLAVEKLITSKLYEP-GSNERIFSVD-----RHIGMAVAGLIPDGRHLVNRARDEAASWRKNYG 104 (254)
T ss_pred HhcCCcEEEEecCCeEEEEEeeeeccccccc-CCCCceEeec-----ccccEEEeccccchHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999997765 6789999999 99999876 88899999999999
Q ss_pred CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
.++|.+.+|.+++++++.+. .|||||+.++++||. ++|+||.+||+|..+.++.+|+|.|.+.+..-||+.-
T Consensus 105 ~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~--- 180 (254)
T KOG0184|consen 105 DPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLK--- 180 (254)
T ss_pred CCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHHhcc---
Confidence 99999999999999986542 589999999999994 5699999999999999999999999999999999852
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
-..|+.+|+++-+.+.+..+-+-.-.-.-.+|+..
T Consensus 181 ---------------------------------------------~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~w 215 (254)
T KOG0184|consen 181 ---------------------------------------------IDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGW 215 (254)
T ss_pred ---------------------------------------------cccccHHHHHHHHHheeEeecccccCcceEEEEEE
Confidence 35899999999999988766543222223466666
Q ss_pred EE
Q psy10322 246 IT 247 (261)
Q Consensus 246 it 247 (261)
+.
T Consensus 216 vg 217 (254)
T KOG0184|consen 216 VG 217 (254)
T ss_pred EE
Confidence 65
No 47
>KOG0863|consensus
Probab=99.90 E-value=3.2e-23 Score=182.51 Aligned_cols=175 Identities=17% Similarity=0.172 Sum_probs=156.4
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+..|+++||+|.++..||+|-+|..+. .+..++|||+|+ +|++++++ +++.++..+++.++
T Consensus 29 vkqGsatVGLks~thaVLvAl~r~~se---Lss~QkKi~~iD-----~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~ 100 (264)
T KOG0863|consen 29 VKQGSATVGLKSRTHAVLVALKRAQSE---LSSHQKKIFKID-----DHIGISIAGLTADARVLSRYLRQECLNSRFIYG 100 (264)
T ss_pred HhcccceEeecccceEEEeeeccchhH---HHHhhheeEecc-----cccceEEeccCcchHHHHHHHHHHHhhhhhccC
Confidence 457999999999999999999987764 357889999999 99999876 89999999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
+++++..+...+.+-++.. ..|||||.++++|||+.| |+||.++|+|++.+++..++|+.|+.+..+||++.
T Consensus 101 r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G-~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~--- 176 (264)
T KOG0863|consen 101 RPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESG-PHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNL--- 176 (264)
T ss_pred CcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCC-ceeEEEcCCccEEEEeeeecccchhhHHHHHHHHH---
Confidence 9999999999999876532 247999999999999766 99999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhc-ccCCCCcEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAER-DIYTGDGVHLC 244 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~r-d~~~g~~v~i~ 244 (261)
+ + .+++++||.|..++.||+..+-. +..++.++.|+
T Consensus 177 ------------------------------------e-----~--f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~ 213 (264)
T KOG0863|consen 177 ------------------------------------E-----E--FEDSSPEELIKHGIMALRETLPEDEDLTGENVSIA 213 (264)
T ss_pred ------------------------------------H-----H--HhcCCHHHHHHHHHHHHHhhcCcccccccceeEEE
Confidence 1 1 47899999999999999999974 47889999999
Q ss_pred EEEcCC
Q psy10322 245 AITKDG 250 (261)
Q Consensus 245 ~itkdg 250 (261)
|+.||-
T Consensus 214 Ivgkd~ 219 (264)
T KOG0863|consen 214 IVGKDE 219 (264)
T ss_pred EEeCCC
Confidence 999984
No 48
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.6e-09 Score=92.73 Aligned_cols=179 Identities=19% Similarity=0.221 Sum_probs=137.0
Q ss_pred CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH---HHHHHHHhhh------hhcC----C
Q psy10322 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT---ITILPFQMYL------HEHN----K 90 (261)
Q Consensus 24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s---~lr~~~~~y~------~~~g----~ 90 (261)
++-+||++-..|.|.++|+|...|.. .-...+|+|... .|++++.+.++ .+..++-.+. .+.+ +
T Consensus 1 MTYCv~l~l~~GlVf~sDsRTNAGvD-~istfkKl~~~~--~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n 77 (255)
T COG3484 1 MTYCVGLILDFGLVFGSDSRTNAGVD-YISTFKKLFVFE--LPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLN 77 (255)
T ss_pred CceEEEEEeccceEEecccccccCch-HHHHHHHHhhcc--CCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhc
Confidence 36799999999999999999998842 235778998866 99999988665 2222221111 1222 2
Q ss_pred cCCHHHHHHHHHHHH---hcc-c------cCCcceEEEEEEEcCCCCeEEEEECCCCceee----cCEEEEecChHHHHH
Q psy10322 91 VMSTTSLAKMISIMM---YGK-R------FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER----ANFRAGGSSGALLQA 156 (261)
Q Consensus 91 ~isv~~lA~~Is~~l---y~~-r------~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~----~~~~a~G~g~~~~~~ 156 (261)
.++.-..+.++.... +.+ + .--|.|++|+||-=.-+.|+||.+-|-|++.+ .+|.-+|.. .+-.|
T Consensus 78 ~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKP 156 (255)
T COG3484 78 IPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKP 156 (255)
T ss_pred chhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCch
Confidence 456667777777653 332 1 23588999999976544589999999999976 479999985 57889
Q ss_pred HHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccC
Q psy10322 157 LLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIY 236 (261)
Q Consensus 157 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~ 236 (261)
+|++.+ ..++++|||.+++.-.|.+.++.+++
T Consensus 157 ildR~i------------------------------------------------~~~~pLeea~kcaLvS~DSTlkSNiS 188 (255)
T COG3484 157 ILDRTI------------------------------------------------TYDTPLEEAAKCALVSFDSTLKSNIS 188 (255)
T ss_pred hhhhhh------------------------------------------------hccCCHHHHhhheEEecchhhhcccc
Confidence 999987 67999999999999999999999999
Q ss_pred CCCcEEEEEEEcCCEEEE
Q psy10322 237 TGDGVHLCAITKDGIKEY 254 (261)
Q Consensus 237 ~g~~v~i~~itkdg~~~~ 254 (261)
.|-.+.+-+..+|-.+..
T Consensus 189 VGlPldLl~~e~ds~~v~ 206 (255)
T COG3484 189 VGLPLDLLVYEADSFSVR 206 (255)
T ss_pred ccCCceeEEEeccceeee
Confidence 999999999999976543
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.1e-06 Score=74.78 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=108.6
Q ss_pred CCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCc
Q psy10322 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKV 91 (261)
Q Consensus 23 ~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~ 91 (261)
++||+++++-++=|+||+|..++.|..+...+.+|+-+|. +.++..+++ .+...+++|. +.-
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~----~gkvlaGFAGstADaftLfe~fe~kle~~~---g~L 75 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLY----NGKVLAGFAGSTADAFTLFERFEAKLEQYQ---GDL 75 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHc----CCcEEEEecccchhHHHHHHHHHHHHHHcc---CcH
Confidence 6899999999999999999999999999988887777666 147777765 3333344332 111
Q ss_pred CCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceee--cCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322 92 MSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER--ANFRAGGSSGALLQALLDNQVGIIQHSS 169 (261)
Q Consensus 92 isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~--~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 169 (261)
.+.+..+..+---.+..|-+-+-++|+ |+ -.++-+...|-..+ .++.|+|||..++++--...+
T Consensus 76 --~raavelaKdwr~Dk~lr~LEAmllVa--d~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~------- 141 (178)
T COG5405 76 --FRAAVELAKDWRTDKYLRKLEAMLLVA--DK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALM------- 141 (178)
T ss_pred --HHHHHHHHHhhhhhhHHHHHhhheeEe--CC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHH-------
Confidence 122222222211011123355556664 54 35777777776544 459999999999998877655
Q ss_pred cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEE
Q psy10322 170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~it 247 (261)
+ .+++| |.+++.+++..+.+-+++++.++.|-.+.
T Consensus 142 --------------------------------~--------~~~ls---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 142 --------------------------------E--------NTELS---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred --------------------------------h--------ccCCC---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 1 34666 67889999999988888888887776553
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=93.74 E-value=0.15 Score=44.87 Aligned_cols=41 Identities=12% Similarity=0.120 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322 209 VDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249 (261)
Q Consensus 209 ~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd 249 (261)
.|++.|+++++.++..++|..+.+.-...+..+++...++.
T Consensus 140 ~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 140 YWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 36899999999999999999999988888889998887753
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=79.60 E-value=8.6 Score=35.37 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=36.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322 209 VDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249 (261)
Q Consensus 209 ~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd 249 (261)
.|.+-++++++.++..++|..+...-+..+..+.++.+++.
T Consensus 141 ~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~ 181 (293)
T COG4079 141 NLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSN 181 (293)
T ss_pred hccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCC
Confidence 37889999999999999999999888888889999888754
No 52
>PRK09732 hypothetical protein; Provisional
Probab=55.40 E-value=33 Score=28.39 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEEE
Q psy10322 211 KTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254 (261)
Q Consensus 211 ~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~~ 254 (261)
++.+|.+.|.+++..|+..+.++ |..+.|++++..|....
T Consensus 4 ~~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a 43 (134)
T PRK09732 4 KVILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLA 43 (134)
T ss_pred cccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEE
Confidence 56799999999999999999984 67999999999997543
No 53
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=52.62 E-value=48 Score=27.91 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEEE
Q psy10322 211 KTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254 (261)
Q Consensus 211 ~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~~ 254 (261)
++.+|.|.|.+++..|+..+.+. |+.|.+++++.+|-..-
T Consensus 5 ~~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~~a 44 (141)
T COG3193 5 KPVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHLVA 44 (141)
T ss_pred ccccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCEEE
Confidence 68999999999999999999883 89999999999997543
No 54
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=47.21 E-value=29 Score=28.02 Aligned_cols=38 Identities=26% Similarity=0.265 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEEE
Q psy10322 213 PVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254 (261)
Q Consensus 213 ~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~~ 254 (261)
.++.++|.+++..+.+.+.++ |..+-|+|++..|...-
T Consensus 2 ~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~ 39 (132)
T PF03928_consen 2 SLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLLA 39 (132)
T ss_dssp EE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EEE
T ss_pred CcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEEE
Confidence 478899999999999999985 55699999999997543
No 55
>KOG3361|consensus
Probab=41.42 E-value=41 Score=28.31 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=26.2
Q ss_pred EEECCCCceeecCEEEEecChHHHHHHHHhhh
Q psy10322 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQV 162 (261)
Q Consensus 131 y~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~ 162 (261)
..+|-.|-..+.+|...|-||..+..-+-..|
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTew 102 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEW 102 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHH
Confidence 47888999999999999999988866555443
No 56
>PRK02487 hypothetical protein; Provisional
Probab=41.25 E-value=1.3e+02 Score=25.46 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEE
Q psy10322 211 KTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252 (261)
Q Consensus 211 ~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~ 252 (261)
.+.++.++|.+++..+.+.+.++ |..+.|+|+. .|..
T Consensus 20 ~~~l~~~~A~~l~~~a~~~A~~~----g~~v~IaVv~-~G~~ 56 (163)
T PRK02487 20 FPHFDNDDAWQLGSLLVELARER----GLPIAIDITL-NGQP 56 (163)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEE-CCcE
Confidence 57899999999999999999874 5689999985 6643
No 57
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=40.42 E-value=50 Score=29.40 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEEEeec
Q psy10322 217 EKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFP 257 (261)
Q Consensus 217 eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~~~~~ 257 (261)
=|++...++.|...+..|.+....++|.+||-+|.-....|
T Consensus 21 IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~~~~p 61 (207)
T COG4245 21 IEALNAGLQMMIDTLKQDPYALERVELSIVTFGGPARVIQP 61 (207)
T ss_pred HHHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcceEEec
Confidence 36889999999999999999999999999998875444444
No 58
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=36.61 E-value=2.1e+02 Score=24.55 Aligned_cols=98 Identities=11% Similarity=0.135 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEe-cChHHHHHHHHhhhhcccccccch
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGG-SSGALLQALLDNQVGIIQHSSKQM 172 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G-~g~~~~~~~Le~~~~~~~~~~~~~ 172 (261)
+..+=++++..+..+ .+++-.+..+.|-|+.........| ..+..+..++++.++.+- .-+
T Consensus 53 lHTlEHL~At~lRn~---------------~~~~~~iI~~sPMGCrTGFYli~~g~~~~~~i~~l~~~~l~~i~---~~~ 114 (158)
T PRK02260 53 IHTLEHLLAGFLRNH---------------LDGGVEIIDISPMGCRTGFYLILIGTPDEEDVADALKATLEDVL---DDQ 114 (158)
T ss_pred hhHHHHHHHHHHhhC---------------ccCCceEEEECCCccccccEEEEeCCCCHHHHHHHHHHHHHHHH---hhc
Confidence 455556666666433 1234677788888888877777778 677778888887763321 001
Q ss_pred hhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcc
Q psy10322 173 KSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERD 234 (261)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd 234 (261)
..+|+ ...-++-|..+.|++.|...|++-|....+.+
T Consensus 115 ~eVPg-------------------------a~~~~CGny~~hsL~~Ak~~a~~~L~~~~~~~ 151 (158)
T PRK02260 115 EEVPG-------------------------ANEYQCGNYKDHSLEGAKEIARKILDQGISVN 151 (158)
T ss_pred CCCCC-------------------------CChhcCCChhhCCHHHHHHHHHHHHHhhcccC
Confidence 11121 11123456889999999999999998877654
No 59
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=32.61 E-value=1.6e+02 Score=22.56 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEc-CCEEEE
Q psy10322 214 VPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITK-DGIKEY 254 (261)
Q Consensus 214 ~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itk-dg~~~~ 254 (261)
.-.+|++.+|.-|+.+-.+. .+-++++|.+... +++..+
T Consensus 34 l~qqEvLnvA~MAvQT~Q~~--L~lNGv~V~v~~~~~~i~V~ 73 (82)
T PF11773_consen 34 LQQQEVLNVAQMAVQTGQDH--LSLNGVEVQVERTQKGIIVY 73 (82)
T ss_pred HHHHHHHHHHHHHHHhCcce--EEEcCeEEEEEEcCCeEEEE
Confidence 44589999999999987654 6778999999984 455544
No 60
>PHA01082 putative transcription regulator
Probab=29.43 E-value=81 Score=26.10 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=29.2
Q ss_pred hhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhccc
Q psy10322 194 SSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDI 235 (261)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~ 235 (261)
+++||.=+=++.++. .+|.|||-++..+..+.+.+.|.
T Consensus 15 ~~emtkNyiFRefeC----gLsveeaa~LCfKsVrtVk~WD~ 52 (133)
T PHA01082 15 RSEMTKNFVFREFEC----GLSVEEAAKLCFKTVSEVKQWDA 52 (133)
T ss_pred Hhhhhcceehhhhcc----CccHHHHHHHHHHhHHHHhhccC
Confidence 456665555554443 79999999999999999999884
No 61
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=26.33 E-value=2.1e+02 Score=19.51 Aligned_cols=21 Identities=5% Similarity=0.268 Sum_probs=15.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q psy10322 211 KTPVPLEKAISVVKDAFTAAA 231 (261)
Q Consensus 211 ~~~~s~eea~~l~~~al~~~~ 231 (261)
..++|+|+++++-.+++..+.
T Consensus 17 ~~~~sLdes~~lyeeg~~l~~ 37 (53)
T PF02609_consen 17 SGELSLDESLKLYEEGMELIK 37 (53)
T ss_dssp TT-S-HHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 579999999999888876554
No 62
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=21.17 E-value=1.8e+02 Score=23.33 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322 211 KTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251 (261)
Q Consensus 211 ~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~ 251 (261)
..+++++..++.+.+||..+..+......++++-+=.+.|-
T Consensus 12 ek~i~~e~v~~ale~al~~a~kK~~~~~~~~~v~id~~~g~ 52 (122)
T PF08529_consen 12 EKGIDKEVVIEALEEALIKAYKKKYGPEANIRVEIDEDTGE 52 (122)
T ss_dssp CCTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEEEEETTTTE
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCe
Confidence 47899999999999999999999876777888776556654
Done!