Query psy10322
Match_columns 261
No_of_seqs 141 out of 1213
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 23:30:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10322.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10322hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_M 20S proteasome; cell cy 100.0 4E-48 1.4E-52 337.3 26.5 202 16-261 1-213 (213)
2 1ryp_M 20S proteasome; multica 100.0 1.5E-47 5.1E-52 336.8 25.2 202 16-261 1-222 (222)
3 1iru_J 20S proteasome; cell cy 100.0 1.7E-45 5.9E-50 318.9 25.2 192 17-261 1-205 (205)
4 1ryp_J 20S proteasome; multica 100.0 5.9E-44 2E-48 309.1 26.2 190 18-261 2-204 (204)
5 1yar_H Proteasome beta subunit 100.0 5.1E-43 1.8E-47 306.9 22.5 182 17-253 1-194 (217)
6 3h4p_a Proteasome subunit beta 100.0 2.3E-42 7.7E-47 303.5 20.3 178 24-254 1-190 (219)
7 1g0u_M Proteasome component PR 100.0 3.4E-42 1.2E-46 311.0 19.8 191 11-255 29-243 (266)
8 1j2q_H Proteasome beta subunit 100.0 3.1E-41 1.1E-45 291.6 22.8 175 25-253 1-187 (202)
9 1ryp_H 20S proteasome; multica 100.0 3.2E-41 1.1E-45 292.4 22.7 184 17-256 3-197 (205)
10 1ryp_N 20S proteasome; multica 100.0 1.4E-41 4.8E-46 300.5 19.8 185 17-255 2-210 (233)
11 1ryp_K 20S proteasome; multica 100.0 4.4E-41 1.5E-45 289.5 21.5 179 24-255 1-193 (198)
12 1iru_H 20S proteasome; cell cy 100.0 7.4E-41 2.5E-45 289.8 22.6 180 25-258 1-191 (205)
13 1iru_N 20S proteasome; cell cy 100.0 3.1E-41 1.1E-45 295.2 20.4 184 17-255 2-201 (219)
14 1ryp_A 20S proteasome; multica 100.0 4E-41 1.4E-45 299.3 20.8 184 21-252 26-225 (243)
15 3nzj_K Proteasome component PR 100.0 7.6E-41 2.6E-45 306.1 22.6 182 21-255 72-264 (287)
16 1iru_L 20S proteasome; cell cy 100.0 2E-40 7E-45 286.9 23.3 176 25-254 1-187 (204)
17 1ryp_L 20S proteasome; multica 100.0 1.7E-40 5.9E-45 289.1 22.8 177 25-254 1-188 (212)
18 1iru_K 20S proteasome; cell cy 100.0 2.7E-40 9.3E-45 285.5 21.8 179 24-255 1-192 (201)
19 1iru_A 20S proteasome; cell cy 100.0 1.8E-40 6.2E-45 295.6 20.9 184 18-256 30-230 (246)
20 3unf_H Proteasome subunit beta 100.0 7E-40 2.4E-44 291.3 23.8 176 25-255 1-187 (234)
21 3nzj_H Proteasome component PU 100.0 1.1E-39 3.7E-44 294.7 23.5 175 21-250 26-211 (261)
22 1ryp_I 20S proteasome; multica 100.0 2.1E-39 7.1E-44 285.2 23.4 175 25-254 1-187 (222)
23 1ryp_C 20S proteasome; multica 100.0 1.2E-39 4.2E-44 289.6 21.7 178 21-251 28-222 (244)
24 1iru_C 20S proteasome; cell cy 100.0 1.5E-39 5E-44 292.7 20.8 178 21-251 28-221 (261)
25 1iru_B 20S proteasome; cell cy 100.0 2.1E-39 7.1E-44 286.3 21.4 180 17-253 25-219 (233)
26 1yar_A Proteasome alpha subuni 100.0 3.6E-39 1.2E-43 284.8 22.2 175 21-251 31-220 (233)
27 3unf_N Proteasome subunit beta 100.0 3.2E-39 1.1E-43 278.1 21.0 177 25-257 1-189 (199)
28 1ryp_E 20S proteasome; multica 100.0 3.4E-39 1.2E-43 286.5 21.8 176 21-251 23-219 (242)
29 1iru_I 20S proteasome; cell cy 100.0 1.6E-38 5.4E-43 282.0 22.5 175 25-254 1-186 (234)
30 1iru_E 20S proteasome; cell cy 100.0 1E-38 3.5E-43 283.5 20.8 175 21-251 31-225 (241)
31 1iru_G 20S proteasome; cell cy 100.0 7.9E-39 2.7E-43 286.8 19.2 175 21-249 30-219 (254)
32 1q5q_H Proteasome beta-type su 100.0 3.5E-38 1.2E-42 279.5 22.8 176 25-253 1-204 (235)
33 1ryp_G 20S proteasome; multica 100.0 3.8E-38 1.3E-42 280.9 22.3 182 21-254 27-226 (244)
34 1ryp_D 20S proteasome; multica 100.0 1E-37 3.5E-42 277.0 23.6 177 21-250 25-217 (241)
35 1q5r_H Proteasome beta-type su 100.0 4.5E-38 1.5E-42 288.6 21.7 180 21-253 62-269 (294)
36 3h4p_A Proteasome subunit alph 100.0 2.8E-38 9.6E-43 285.6 18.9 178 22-256 36-228 (264)
37 3nzj_F Proteasome component C1 100.0 4.7E-38 1.6E-42 287.7 20.5 176 21-248 31-221 (288)
38 1ryp_F 20S proteasome; multica 100.0 9.9E-38 3.4E-42 275.8 20.1 175 21-253 28-223 (233)
39 1ryp_B 20S proteasome; multica 100.0 1.5E-37 5.1E-42 277.6 21.1 175 21-250 28-218 (250)
40 1iru_D 20S proteasome; cell cy 100.0 1E-37 3.5E-42 278.6 18.7 173 21-250 26-215 (248)
41 1j2p_A Alpha-ring, proteasome 100.0 5.1E-37 1.7E-41 273.5 23.1 176 21-253 31-223 (246)
42 2jay_A Proteasome; hydrolase; 100.0 1.3E-37 4.3E-42 285.2 19.7 180 21-253 54-261 (291)
43 1iru_F 20S proteasome; cell cy 100.0 2E-37 6.9E-42 279.4 20.1 175 21-252 29-222 (263)
44 3mi0_A Proteasome subunit alph 100.0 7.3E-37 2.5E-41 274.3 21.7 181 7-250 11-217 (248)
45 1q5q_A Proteasome alpha-type s 100.0 5.5E-37 1.9E-41 276.1 17.3 181 7-250 11-215 (259)
46 2z3b_A ATP-dependent protease 100.0 1.4E-31 4.6E-36 228.6 17.2 158 22-246 3-179 (180)
47 1g3k_A ATP-dependent protease 100.0 2.9E-31 9.9E-36 224.8 17.4 156 25-247 1-173 (174)
48 1m4y_A ATP-dependent protease 100.0 3.9E-31 1.3E-35 223.2 16.9 155 25-246 1-171 (171)
49 3fpw_A HBPS, extracellular HAE 37.4 59 0.002 27.4 5.8 39 211-253 62-100 (192)
50 2a2l_A Unknown; structural gen 29.8 53 0.0018 26.1 4.1 38 212-253 10-47 (145)
51 2kwp_A Transcription elongatio 29.2 96 0.0033 24.2 5.5 40 212-251 16-55 (129)
52 2q8v_A NBLA protein; phycobili 20.0 81 0.0028 22.0 2.9 23 212-234 28-50 (63)
No 1
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=4e-48 Score=337.32 Aligned_cols=202 Identities=52% Similarity=0.919 Sum_probs=189.5
Q ss_pred cccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhh
Q psy10322 16 HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMY 84 (261)
Q Consensus 16 ~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y 84 (261)
.|+||+++|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 75 (213)
T 1iru_M 1 RFSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLT-----DKTVIGCSGFHGDCLTLTKIIEARLKMY 75 (213)
T ss_dssp CCCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcC-----CCEEEEccccHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999889999999999 99999876 888899999
Q ss_pred hhhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322 85 LHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI 164 (261)
Q Consensus 85 ~~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~ 164 (261)
+++++++++++.+|+++++++|++|++||+|++||||||++|+|+||++||.|++.++++.|+|+|+.+++++||+.+
T Consensus 76 ~~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~-- 153 (213)
T 1iru_M 76 KHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV-- 153 (213)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHT--
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcc--
Confidence 999999999999999999999998899999999999999888899999999999999999999999999999999987
Q ss_pred ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322 165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244 (261)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~ 244 (261)
+.+++.+.|+++||+|||++++++||..+.+||+.++++++|+
T Consensus 154 -------------------------------------~~~~~~~~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~ 196 (213)
T 1iru_M 154 -------------------------------------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRIC 196 (213)
T ss_dssp -------------------------------------TCCSCSSCCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEE
T ss_pred -------------------------------------ccccccccCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEE
Confidence 2222223368999999999999999999999999999999999
Q ss_pred EEEcCCEEEEeeccCCC
Q psy10322 245 AITKDGIKEYNFPLRKD 261 (261)
Q Consensus 245 ~itkdg~~~~~~~~r~~ 261 (261)
+|++||++++.+++|+|
T Consensus 197 vi~~~g~~~~~~~~r~d 213 (213)
T 1iru_M 197 IVTKEGIREETVSLRKD 213 (213)
T ss_dssp EEETTEEEEEEEECCCC
T ss_pred EEcCCCeEEEEeecCCC
Confidence 99999999999999998
No 2
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.5e-47 Score=336.84 Aligned_cols=202 Identities=45% Similarity=0.783 Sum_probs=189.3
Q ss_pred cccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhh
Q psy10322 16 HFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMY 84 (261)
Q Consensus 16 ~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y 84 (261)
.|+||+++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ +|++|+++ +++.+++.|
T Consensus 1 ~~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~ 75 (222)
T 1ryp_M 1 QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCG-----DNIVMSANGFAADGDALVKRFKNSVKWY 75 (222)
T ss_dssp CCCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeC-----CCEEEEccccHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999988999999999999 99999876 888899999
Q ss_pred hhhcC-CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhh
Q psy10322 85 LHEHN-KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVG 163 (261)
Q Consensus 85 ~~~~g-~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~ 163 (261)
+++++ ++|+++.+|+++++++|.+|++||+|++||||||++|+|+||++||.|++.++++.|+|+|+.+++++||+.+
T Consensus 76 ~~~~~~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~- 154 (222)
T 1ryp_M 76 HFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQV- 154 (222)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHT-
T ss_pred HHHcCCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccc-
Confidence 99999 9999999999999999999999999999999999888899999999999999999999999999999999987
Q ss_pred cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCC--------CCCCCCCHHHHHHHHHHHHHHHHhccc
Q psy10322 164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQEN--------VDKTPVPLEKAISVVKDAFTAAAERDI 235 (261)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~eea~~l~~~al~~~~~rd~ 235 (261)
+++|+.. .|+++||+|||++++++||..+.+||+
T Consensus 155 --------------------------------------~~~~~~~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~ 196 (222)
T 1ryp_M 155 --------------------------------------NFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHI 196 (222)
T ss_dssp --------------------------------------SCTTCBCTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBT
T ss_pred --------------------------------------ccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 2222111 268999999999999999999999999
Q ss_pred CCCCcEEEEEEEcCCEEEEeeccCCC
Q psy10322 236 YTGDGVHLCAITKDGIKEYNFPLRKD 261 (261)
Q Consensus 236 ~~g~~v~i~~itkdg~~~~~~~~r~~ 261 (261)
.+|++++|++|++||++++.+++|+|
T Consensus 197 ~sg~~i~v~vi~~~g~~~~~~~~r~d 222 (222)
T 1ryp_M 197 QVGDGLEILIVTKDGVRKEFYELKRD 222 (222)
T ss_dssp TCCSEEEEEEEETTEEEEEEEECCCC
T ss_pred cCCCcEEEEEEcCCCeEEEEeeccCC
Confidence 99999999999999999999999998
No 3
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.7e-45 Score=318.92 Aligned_cols=192 Identities=27% Similarity=0.413 Sum_probs=182.2
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
++||+.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 75 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMG-----DRLYIGLAGLATDVQTVAQRLKFRLNLYE 75 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECS-----TTEEEECCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeC-----CCEEEEccccHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999998888999999999 99999886 8888999999
Q ss_pred hhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcC-CCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhh
Q psy10322 86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVG 163 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~ 163 (261)
++++++++++.+|+++++++|.+|+.||+|++||||||+ +++|+||++||.|++.+ ..|.|+|+|+.+++++||+.|
T Consensus 76 ~~~~~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~- 154 (205)
T 1iru_J 76 LKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLW- 154 (205)
T ss_dssp HHSSSCCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHC-
T ss_pred hhcCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhccc-
Confidence 999999999999999999999988889999999999996 57799999999999855 567999999999999999986
Q ss_pred cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEE
Q psy10322 164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHL 243 (261)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i 243 (261)
+++||+|||++++++||..+.+||+.++++++|
T Consensus 155 -----------------------------------------------~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v 187 (205)
T 1iru_J 155 -----------------------------------------------EPNMDPDHLFETISQAMLNAVDRDAVSGMGVIV 187 (205)
T ss_dssp -----------------------------------------------CSSCCHHHHHHHHHHHHHHHGGGBTTSCSCEEE
T ss_pred -----------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhCcccCCceEE
Confidence 789999999999999999999999999999999
Q ss_pred EEEEcCCEEEEeeccCCC
Q psy10322 244 CAITKDGIKEYNFPLRKD 261 (261)
Q Consensus 244 ~~itkdg~~~~~~~~r~~ 261 (261)
++|++||++++.+++|+|
T Consensus 188 ~vi~~~g~~~~~~~~r~d 205 (205)
T 1iru_J 188 HIIEKDKITTRTLKARMD 205 (205)
T ss_dssp EEEESSBEEEEEBCCCCC
T ss_pred EEEcCCCEEEEEeecCCC
Confidence 999999999999999998
No 4
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=5.9e-44 Score=309.08 Aligned_cols=190 Identities=25% Similarity=0.437 Sum_probs=179.3
Q ss_pred cccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhh
Q psy10322 18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLH 86 (261)
Q Consensus 18 ~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~ 86 (261)
+||+.+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ |++|+++ +++.+++.|++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~------~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 75 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG------HVFLGITGLATDVTTLNEMFRYKTNLYKL 75 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET------TEEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC------CEEEEeeEcHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999998888999999998 5777765 88889999999
Q ss_pred hcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcC-CCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhhc
Q psy10322 87 EHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDP-EGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVGI 164 (261)
Q Consensus 87 ~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~~ 164 (261)
+++++++++.+|+++++++|.+|..||+|++||||||+ +++|+||++||.|++.+ ..|.|+|+|+.+++++||+.|
T Consensus 76 ~~~~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~-- 153 (204)
T 1ryp_J 76 KEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLY-- 153 (204)
T ss_dssp HHSSCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHC--
T ss_pred ccCCCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhc--
Confidence 99999999999999999999998889999999999996 57899999999999855 478999999999999999986
Q ss_pred ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322 165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244 (261)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~ 244 (261)
+++||.|||++++++||..+.+||+.++++++|+
T Consensus 154 ----------------------------------------------~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~ 187 (204)
T 1ryp_J 154 ----------------------------------------------EPNLEPEDLFETISQALLNAADRDALSGWGAVVY 187 (204)
T ss_dssp ----------------------------------------------CSSCCHHHHHHHHHHHHHHHHTTBTTSCSCEEEE
T ss_pred ----------------------------------------------CCCcCHHHHHHHHHHHHHHHHHhCcccCCcEEEE
Confidence 7899999999999999999999999999999999
Q ss_pred EEEcCCEEEEeeccCCC
Q psy10322 245 AITKDGIKEYNFPLRKD 261 (261)
Q Consensus 245 ~itkdg~~~~~~~~r~~ 261 (261)
+|++||++++.+++|+|
T Consensus 188 vi~~~g~~~~~~~~r~d 204 (204)
T 1ryp_J 188 IIKKDEVVKRYLKMRQD 204 (204)
T ss_dssp EEESSCEEEEEECCCCC
T ss_pred EEcCCCEEEEEeecCCC
Confidence 99999999999999998
No 5
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=5.1e-43 Score=306.94 Aligned_cols=182 Identities=23% Similarity=0.387 Sum_probs=166.9
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
|+|++.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 75 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQID-----TYTGMTIAGLVGDAQVLVRYMKAELELYR 75 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeC-----CCEEEEeCcCHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999899999999999999 99999876 8889999999
Q ss_pred hhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++++++++++.+|+++++++|++|++||+|++|||||| + +|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 76 ~~~~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D-~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--- 150 (217)
T 1yar_H 76 LQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID-T-APHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQY--- 150 (217)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES-S-SEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHC---
T ss_pred HHHCCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC-C-CCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhc---
Confidence 99999999999999999999998899999999999999 4 599999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++||.|||++++++||..+.+||..++++++|++
T Consensus 151 ---------------------------------------------~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~v 185 (217)
T 1yar_H 151 ---------------------------------------------SEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAV 185 (217)
T ss_dssp ---------------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCTTCCSCCEEEE
T ss_pred ---------------------------------------------ccCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEE
Confidence 78999999999999999999999999999999999
Q ss_pred EEc-CCEEE
Q psy10322 246 ITK-DGIKE 253 (261)
Q Consensus 246 itk-dg~~~ 253 (261)
|++ +|++.
T Consensus 186 i~~~~g~~~ 194 (217)
T 1yar_H 186 ITRKDGYVQ 194 (217)
T ss_dssp EETTTEEEE
T ss_pred EECCCCEEE
Confidence 999 88664
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.3e-42 Score=303.49 Aligned_cols=178 Identities=29% Similarity=0.477 Sum_probs=169.5
Q ss_pred CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM 92 (261)
Q Consensus 24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i 92 (261)
|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|++++++++
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 75 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKID-----DYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNI 75 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEE-----TTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCC
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEec-----CCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 789999999999999999999999899999999999999 99999886 88889999999999999
Q ss_pred CHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecC-EEEEecChHHHHHHHHhhhhcccccccc
Q psy10322 93 STTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN-FRAGGSSGALLQALLDNQVGIIQHSSKQ 171 (261)
Q Consensus 93 sv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~~ 171 (261)
+++.+|+++++++|++|++||+|++||||||++++|+||++||+|++.+++ +.|+|+|+.+++++||+.|
T Consensus 76 ~v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~--------- 146 (219)
T 3h4p_a 76 PPLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGY--------- 146 (219)
T ss_dssp CHHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSC---------
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhc---------
Confidence 999999999999999889999999999999986779999999999999999 9999999999999999976
Q ss_pred hhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322 172 MKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251 (261)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~ 251 (261)
+++||.|||++++++||..+.+||..+|++++|++|++||+
T Consensus 147 ---------------------------------------~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~g~ 187 (219)
T 3h4p_a 147 ---------------------------------------DRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVITKDGV 187 (219)
T ss_dssp ---------------------------------------CTTCCHHHHHHHHHHHHHHHHTSCSSCCSCCCEEEEETTEE
T ss_pred ---------------------------------------CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCCe
Confidence 78999999999999999999999999999999999999997
Q ss_pred EEE
Q psy10322 252 KEY 254 (261)
Q Consensus 252 ~~~ 254 (261)
++.
T Consensus 188 ~~l 190 (219)
T 3h4p_a 188 KIF 190 (219)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 7
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=3.4e-42 Score=310.97 Aligned_cols=191 Identities=18% Similarity=0.233 Sum_probs=175.7
Q ss_pred CcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHH
Q psy10322 11 TPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITIL 79 (261)
Q Consensus 11 ~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~ 79 (261)
.|++|.|+|+. +|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ +|++|+++ +++.
T Consensus 29 ~~~~~~~~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~-----d~i~~~~aG~~aD~~~l~~~lr~ 102 (266)
T 1g0u_M 29 SPMVNTQQPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVG-----DNTVVGISGDISDMQHIERLLKD 102 (266)
T ss_dssp -----CCCCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECT-----TSEEEEEEEEHHHHHHHHHHHHH
T ss_pred cchhhhccCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcC-----CCEEEEeccCHHHHHHHHHHHHH
Confidence 45799999987 6999999999999999999999999899999999999999 99999876 8888
Q ss_pred HHHhhhh-----hcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChH
Q psy10322 80 PFQMYLH-----EHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGA 152 (261)
Q Consensus 80 ~~~~y~~-----~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~ 152 (261)
+++.|++ +++++++++.+|+++++++|.+| ++||+|++||||||++++|+||++||.|++.++++.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~ 182 (266)
T 1g0u_M 103 LVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAH 182 (266)
T ss_dssp HHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHH
T ss_pred HHHHhhhccchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHH
Confidence 9999998 89999999999999999999877 6899999999999987689999999999999999999999999
Q ss_pred HHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC-----CCCHHHHHHHHHHHH
Q psy10322 153 LLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT-----PVPLEKAISVVKDAF 227 (261)
Q Consensus 153 ~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~eea~~l~~~al 227 (261)
+++++||+.| ++ +||+|||++++++||
T Consensus 183 ~a~~~Le~~~------------------------------------------------~~~~~~~~ms~eeA~~la~~al 214 (266)
T 1g0u_M 183 MANPLLRKVV------------------------------------------------DRESDIPKTTVQVAEEAIVNAM 214 (266)
T ss_dssp THHHHHTTTC------------------------------------------------SSGGGGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhh------------------------------------------------cccccCCCCCHHHHHHHHHHHH
Confidence 9999999987 55 999999999999999
Q ss_pred HHHHhcccCCCCcEEEEEEEcC-CEEEEe
Q psy10322 228 TAAAERDIYTGDGVHLCAITKD-GIKEYN 255 (261)
Q Consensus 228 ~~~~~rd~~~g~~v~i~~itkd-g~~~~~ 255 (261)
..+.+||+.+|++++|++|++| |++...
T Consensus 215 ~~a~~rd~~sg~~i~v~vI~k~~g~~~~~ 243 (266)
T 1g0u_M 215 RVLYYRDARSSRNFSLAIIDKNTGLTFKK 243 (266)
T ss_dssp HHHHHHBTTCCSEEEEEEEETTTEEEEEE
T ss_pred HHHHHhcCCCCCcEEEEEEECCCCeEEcC
Confidence 9999999999999999999999 887643
No 8
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.1e-41 Score=291.59 Aligned_cols=175 Identities=24% Similarity=0.421 Sum_probs=167.4
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++|+
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIA-----DRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPT 75 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcC-----CCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 68999999999999999999999889999999999999 99999876 888999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecC-EEEEecChHHHHHHHHhhhhcccccccch
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN-FRAGGSSGALLQALLDNQVGIIQHSSKQM 172 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~-~~a~G~g~~~~~~~Le~~~~~~~~~~~~~ 172 (261)
++.+|+++++++|.+|++||+|++||||||+ ++|+||++||.|++.+++ +.|+|+|+.+++++||+.|
T Consensus 76 ~~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~---------- 144 (202)
T 1j2q_H 76 VRAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRF---------- 144 (202)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhc----------
Confidence 9999999999999988999999999999997 569999999999999999 9999999999999999987
Q ss_pred hhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEE
Q psy10322 173 KSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252 (261)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~ 252 (261)
+++||.|||++++++||..+.+||..++++++|++|+++|++
T Consensus 145 --------------------------------------~~~~s~eea~~la~~al~~~~~~d~~s~~~i~v~vi~~~g~~ 186 (202)
T 1j2q_H 145 --------------------------------------TPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFY 186 (202)
T ss_dssp --------------------------------------CTTCCHHHHHHHHHHHHHHHHTTCTTSCSCEEEEEECSSCEE
T ss_pred --------------------------------------CCCcCHHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCCeE
Confidence 789999999999999999999999999999999999999976
Q ss_pred E
Q psy10322 253 E 253 (261)
Q Consensus 253 ~ 253 (261)
.
T Consensus 187 ~ 187 (202)
T 1j2q_H 187 Q 187 (202)
T ss_dssp E
T ss_pred E
Confidence 4
No 9
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=3.2e-41 Score=292.42 Aligned_cols=184 Identities=21% Similarity=0.302 Sum_probs=173.3
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
++++ .+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 3 ~~av-~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 76 (205)
T 1ryp_H 3 KGEV-SLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVH-----DKIWCCRSGSAADTQAIADIVQYHLELYT 76 (205)
T ss_dssp TTCC-BCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEEBHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-cCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcC-----CCEEEEccCCHHHHHHHHHHHHHHHHHHH
Confidence 4554 57999999999999999999999999888899999999999 99999876 8889999999
Q ss_pred hhcCCcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
+++++ ++++.+|+++++++|.+|.+ |++++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 77 ~~~~~-~~v~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~--- 151 (205)
T 1ryp_H 77 SQYGT-PSTETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNF--- 151 (205)
T ss_dssp HHHSS-CCHHHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHC---
T ss_pred HHhCC-CCHHHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhcc---
Confidence 99999 99999999999999988766 99999999999766799999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++||.|||++++++||..+.+||+.+|++++|++
T Consensus 152 ---------------------------------------------~~~~s~eea~~l~~~al~~a~~~d~~sg~~i~v~v 186 (205)
T 1ryp_H 152 ---------------------------------------------RENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVV 186 (205)
T ss_dssp ---------------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEE
T ss_pred ---------------------------------------------CCCCCHHHHHHHHHHHHHHHHHhCCccCCeEEEEE
Confidence 78999999999999999999999999999999999
Q ss_pred EEcCCEEEEee
Q psy10322 246 ITKDGIKEYNF 256 (261)
Q Consensus 246 itkdg~~~~~~ 256 (261)
|++||++++.+
T Consensus 187 i~~~g~~~~~~ 197 (205)
T 1ryp_H 187 LTAAGVERLIF 197 (205)
T ss_dssp EETTEEEEEEE
T ss_pred EcCCCEEEEEe
Confidence 99999988776
No 10
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=1.4e-41 Score=300.47 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=172.9
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
.+|+ .+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 2 ~~av-~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 75 (233)
T 1ryp_N 2 QQPI-VTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVG-----DNTVVGISGDISDMQHIERLLKDLVTENA 75 (233)
T ss_dssp CCCC-EEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEET-----TTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred cccc-cCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeC-----CCEEEEccccHHHHHHHHHHHHHHHHHHh
Confidence 3454 56999999999999999999999999999999999999999 99999876 8888999999
Q ss_pred h-----hcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHH
Q psy10322 86 H-----EHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALL 158 (261)
Q Consensus 86 ~-----~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~L 158 (261)
+ +++++|+++.+|+++++++|.+| ++||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++|
T Consensus 76 ~~~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~L 155 (233)
T 1ryp_N 76 YDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 155 (233)
T ss_dssp TTCTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHH
T ss_pred hccchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHH
Confidence 8 89999999999999999999877 6899999999999987789999999999999999999999999999999
Q ss_pred HhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC-----CCCHHHHHHHHHHHHHHHHhc
Q psy10322 159 DNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT-----PVPLEKAISVVKDAFTAAAER 233 (261)
Q Consensus 159 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~s~eea~~l~~~al~~~~~r 233 (261)
|+.| ++ +||+|||++++++||..+.+|
T Consensus 156 e~~~------------------------------------------------~~~~~~~~ms~eea~~la~~al~~~~~r 187 (233)
T 1ryp_N 156 RKVV------------------------------------------------DRESDIPKTTVQVAEEAIVNAMRVLYYR 187 (233)
T ss_dssp TTTC------------------------------------------------SSGGGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhh------------------------------------------------ccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 9987 55 999999999999999999999
Q ss_pred ccCCCCcEEEEEEEcC-CEEEEe
Q psy10322 234 DIYTGDGVHLCAITKD-GIKEYN 255 (261)
Q Consensus 234 d~~~g~~v~i~~itkd-g~~~~~ 255 (261)
|+.+|++++|++|++| |++...
T Consensus 188 d~~sg~~i~v~vi~~~~g~~~~~ 210 (233)
T 1ryp_N 188 DARSSRNFSLAIIDKNTGLTFKK 210 (233)
T ss_dssp BTTCCSEEEEEEEETTTEEEEEE
T ss_pred cccCCCcEEEEEEECCCCeEEcC
Confidence 9999999999999999 887644
No 11
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=4.4e-41 Score=289.49 Aligned_cols=179 Identities=21% Similarity=0.301 Sum_probs=168.2
Q ss_pred CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM 92 (261)
Q Consensus 24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i 92 (261)
++|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++++++ +++.+++.|++++++++
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 75 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLS-----PHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYEL 75 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeC-----CCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 479999999999999999999999988889999999999 99999876 88889999999999999
Q ss_pred CHHHHHHHHHHHHhcc-cc-CCcceEEEEEEEcC-CCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322 93 STTSLAKMISIMMYGK-RF-FPYYTSTIIAGLDP-EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS 169 (261)
Q Consensus 93 sv~~lA~~Is~~ly~~-r~-~P~~v~~IVaG~D~-~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 169 (261)
+++.+|+++++++|.+ |. +||+|++||||||+ +++|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 76 ~v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~------- 148 (198)
T 1ryp_K 76 SPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHY------- 148 (198)
T ss_dssp CHHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHC-------
T ss_pred CHHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhc-------
Confidence 9999999999999875 34 49999999999997 57899999999999999999999999999999999986
Q ss_pred cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322 170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd 249 (261)
+++||.|||++++++||..+.+||..+|++++|++|++|
T Consensus 149 -----------------------------------------~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~ 187 (198)
T 1ryp_K 149 -----------------------------------------RPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKD 187 (198)
T ss_dssp -----------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCSBCCCCEEEEEEETT
T ss_pred -----------------------------------------CCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEcCC
Confidence 789999999999999999999999999999999999999
Q ss_pred CEEEEe
Q psy10322 250 GIKEYN 255 (261)
Q Consensus 250 g~~~~~ 255 (261)
|+++..
T Consensus 188 g~~~~~ 193 (198)
T 1ryp_K 188 GIRQVD 193 (198)
T ss_dssp EEEEEC
T ss_pred CEEEec
Confidence 987654
No 12
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=7.4e-41 Score=289.83 Aligned_cols=180 Identities=24% Similarity=0.284 Sum_probs=170.4
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIH-----DRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPL 75 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcC-----CCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 68999999999999999999999888899999999999 99999876 888999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+|+++++++|.+|. ||++++||||||++++|+||.+||.|++.++++.|+|+|+.+++++||+.|
T Consensus 76 v~~la~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~----------- 143 (205)
T 1iru_H 76 VHTAASLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATY----------- 143 (205)
T ss_dssp HHHHHHHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhc-----------
Confidence 99999999999998875 999999999999867799999999999999999999999999999999986
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||.|||++++++||..+.+||..++++++|++|++||++.
T Consensus 144 -------------------------------------~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~ 186 (205)
T 1iru_H 144 -------------------------------------REGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVER 186 (205)
T ss_dssp -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCcEEEEEEeCCCeEE
Confidence 7899999999999999999999999999999999999999977
Q ss_pred Eeecc
Q psy10322 254 YNFPL 258 (261)
Q Consensus 254 ~~~~~ 258 (261)
+.++.
T Consensus 187 ~~l~~ 191 (205)
T 1iru_H 187 QVLLG 191 (205)
T ss_dssp EEECG
T ss_pred EEeCh
Confidence 76653
No 13
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=3.1e-41 Score=295.18 Aligned_cols=184 Identities=18% Similarity=0.180 Sum_probs=172.1
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
.+|+ .+|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 2 ~~av-~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 75 (219)
T 1iru_N 2 QNPM-VTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVN-----NSTMLGASGDYADFQYLKQVLGQMVIDEE 75 (219)
T ss_dssp CSCC-SEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEET-----TTEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCc-cCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeC-----CCEEEEeccCHHHHHHHHHHHHHHHHHHH
Confidence 3454 57999999999999999999999999999999999999999 99999876 8888999998
Q ss_pred h-hcCCcCCHHHHHHHHHHHHhccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhh
Q psy10322 86 H-EHNKVMSTTSLAKMISIMMYGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQV 162 (261)
Q Consensus 86 ~-~~g~~isv~~lA~~Is~~ly~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~ 162 (261)
+ +++++++++.+|+++++++|.+| ++||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 76 ~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 154 (219)
T 1iru_N 76 LLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVL 154 (219)
T ss_dssp HHCSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhc
Confidence 8 99999999999999999999877 789999999999996 5799999999999999999999999999999999988
Q ss_pred hcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322 163 GIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERDIYTGDG 240 (261)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd~~~g~~ 240 (261)
++ +||.|||++++++||..+.+||+.++++
T Consensus 155 ------------------------------------------------~~~~~mt~eea~~l~~~al~~~~~~d~~sg~~ 186 (219)
T 1iru_N 155 ------------------------------------------------EKQPVLSQTEARDLVERCMRVLYYRDARSYNR 186 (219)
T ss_dssp ------------------------------------------------TSCSCCCHHHHHHHHHHHHHHHHHHBTTCCSC
T ss_pred ------------------------------------------------CCCCCCCHHHHHHHHHHHHHHHHHhcCcCCCc
Confidence 56 9999999999999999999999999999
Q ss_pred EEEEEEEcCCEEEEe
Q psy10322 241 VHLCAITKDGIKEYN 255 (261)
Q Consensus 241 v~i~~itkdg~~~~~ 255 (261)
++|++|++||++...
T Consensus 187 i~v~vi~~~g~~~~~ 201 (219)
T 1iru_N 187 FQTATVTEKGVEIEG 201 (219)
T ss_dssp EEEEEEETTEEEEEE
T ss_pred EEEEEEcCCCEEEcC
Confidence 999999999986654
No 14
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=4e-41 Score=299.28 Aligned_cols=184 Identities=17% Similarity=0.173 Sum_probs=165.9
Q ss_pred ccC-CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhc
Q psy10322 21 SDN-GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEH 88 (261)
Q Consensus 21 ~~~-G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~ 88 (261)
+++ |+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+ +|++|+++ +++.+++.|++.+
T Consensus 26 v~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~ 99 (243)
T 1ryp_A 26 TNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCIS-----RTIGMVVNGPIPDARNAALRAKAEAAEFRYKY 99 (243)
T ss_dssp TTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECS-----SSCEEEEESCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEEC-----CCEEEEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 9999999999999999999999 6678889999999999 99999876 8889999999999
Q ss_pred CCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322 89 NKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI 164 (261)
Q Consensus 89 g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~ 164 (261)
+++|+++.+|+++++++ |.+| ++||+|++||||||++++|+||++||+|++.++++.|+|+|+.+++++||+.|+.
T Consensus 100 ~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~ 179 (243)
T 1ryp_A 100 GYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKK 179 (243)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhh
Confidence 99999999999999999 7766 7899999999999976789999999999999999999999999999999999811
Q ss_pred ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322 165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244 (261)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~ 244 (261)
.. . ...++||+|||++++++||..+.+|| .++++++|+
T Consensus 180 ~~---------------------------------------~--~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~ 217 (243)
T 1ryp_A 180 SK---------------------------------------I--DHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVG 217 (243)
T ss_dssp HC---------------------------------------S--SSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEE
T ss_pred cc---------------------------------------c--ccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEE
Confidence 00 0 00239999999999999999999999 689999999
Q ss_pred EEEcCCEE
Q psy10322 245 AITKDGIK 252 (261)
Q Consensus 245 ~itkdg~~ 252 (261)
+|++||++
T Consensus 218 vi~~~g~~ 225 (243)
T 1ryp_A 218 VATKDKFF 225 (243)
T ss_dssp EEETTEEE
T ss_pred EEECCCeE
Confidence 99999944
No 15
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=7.6e-41 Score=306.12 Aligned_cols=182 Identities=23% Similarity=0.261 Sum_probs=170.7
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|++.|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~-----d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~ 146 (287)
T 3nzj_K 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEIN-----PFLLGTMAGGAADCQFWETWLGSQCRLHELREK 146 (287)
T ss_dssp ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEECEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEc-----CcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999999999999999999 99999876 78899999999999
Q ss_pred CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322 90 KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS 169 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 169 (261)
++++++.+|+++++++|.+|.+||++++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 147 ~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y------- 219 (287)
T 3nzj_K 147 ERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY------- 219 (287)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSC-------
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhh-------
Confidence 9999999999999999999888999999999999777899999999999999999999999999999999976
Q ss_pred cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322 170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd 249 (261)
+++||.|||++++++||..+.+||+.+|++++|++|++|
T Consensus 220 -----------------------------------------~~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkd 258 (287)
T 3nzj_K 220 -----------------------------------------KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTED 258 (287)
T ss_dssp -----------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT
T ss_pred -----------------------------------------cCCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCC
Confidence 789999999999999999999999999999999999999
Q ss_pred CEEEEe
Q psy10322 250 GIKEYN 255 (261)
Q Consensus 250 g~~~~~ 255 (261)
|+++..
T Consensus 259 g~~~l~ 264 (287)
T 3nzj_K 259 GWIYHG 264 (287)
T ss_dssp EEEEEE
T ss_pred CEEEeC
Confidence 987643
No 16
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2e-40 Score=286.85 Aligned_cols=176 Identities=22% Similarity=0.287 Sum_probs=167.6
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEIN-----PYLLGTMAGGAADCSFWERLLARQCRIYELRNKERIS 75 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcC-----CCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 68999999999999999999999889999999999999 99999876 888899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+|+++++++|.+|.+||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 76 v~~la~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~----------- 143 (204)
T 1iru_L 76 VAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGY----------- 143 (204)
T ss_dssp HHHHHHHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccC-----------
Confidence 9999999999999998889999999999996 5699999999999999999999999999999999976
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||.|||++++++||..+.+||+.++++++|++|+++|++.
T Consensus 144 -------------------------------------~~~~s~eea~~l~~~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 186 (204)
T 1iru_L 144 -------------------------------------SYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIR 186 (204)
T ss_dssp -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEECSSCEEE
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhCccCCCceEEEEEeCCceEE
Confidence 7899999999999999999999999999999999999999765
Q ss_pred E
Q psy10322 254 Y 254 (261)
Q Consensus 254 ~ 254 (261)
.
T Consensus 187 l 187 (204)
T 1iru_L 187 V 187 (204)
T ss_dssp E
T ss_pred e
Confidence 4
No 17
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=1.7e-40 Score=289.15 Aligned_cols=177 Identities=23% Similarity=0.256 Sum_probs=168.8
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEIN-----PFLLGTMAGGAADCQFWETWLGSQCRLHELREKERIS 75 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeC-----CcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 68999999999999999999999889999999999999 99999886 888899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+|+++++++|.++..||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 76 v~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~----------- 144 (212)
T 1ryp_L 76 VAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNY----------- 144 (212)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhC-----------
Confidence 999999999999998888999999999999767799999999999999999999999999999999986
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||.|||++++++||..+.+||..++++++|++|+++|++.
T Consensus 145 -------------------------------------~~~~s~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~g~~~ 187 (212)
T 1ryp_L 145 -------------------------------------KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIY 187 (212)
T ss_dssp -------------------------------------CTTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTEEEE
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCceEEEEEcCCceEE
Confidence 7899999999999999999999999999999999999999765
Q ss_pred E
Q psy10322 254 Y 254 (261)
Q Consensus 254 ~ 254 (261)
.
T Consensus 188 ~ 188 (212)
T 1ryp_L 188 H 188 (212)
T ss_dssp E
T ss_pred E
Confidence 4
No 18
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.7e-40 Score=285.46 Aligned_cols=179 Identities=21% Similarity=0.322 Sum_probs=167.0
Q ss_pred CceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322 24 GGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM 92 (261)
Q Consensus 24 G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i 92 (261)
++|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++++++ +++.+++.|++++++++
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 75 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMS-----EKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYEL 75 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECS-----SSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEec-----CCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 479999999999999999999999889999999999999 99999876 88889999999999999
Q ss_pred CHHHHHHHHHHHH-hccc-cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccccccc
Q psy10322 93 STTSLAKMISIMM-YGKR-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSK 170 (261)
Q Consensus 93 sv~~lA~~Is~~l-y~~r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 170 (261)
+++.+|+++++.+ |..| .+||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 76 ~v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~-------- 147 (201)
T 1iru_K 76 SPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYY-------- 147 (201)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHC--------
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcc--------
Confidence 9999999999865 5533 36999999999999867899999999999999999999999999999999986
Q ss_pred chhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC
Q psy10322 171 QMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250 (261)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg 250 (261)
+++||.|||++++++||..+.+||+.+|++++|++|++||
T Consensus 148 ----------------------------------------~~~~s~eea~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g 187 (201)
T 1iru_K 148 ----------------------------------------TPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNG 187 (201)
T ss_dssp ----------------------------------------CTTCCHHHHHHHHHHHHHHHHHTBCBCCCCEEEEEEETTE
T ss_pred ----------------------------------------cCCCCHHHHHHHHHHHHHHHHhhccccCCceEEEEEcCCC
Confidence 7899999999999999999999999999999999999999
Q ss_pred EEEEe
Q psy10322 251 IKEYN 255 (261)
Q Consensus 251 ~~~~~ 255 (261)
+++..
T Consensus 188 ~~~~~ 192 (201)
T 1iru_K 188 IHDLD 192 (201)
T ss_dssp EECCC
T ss_pred eEEee
Confidence 97654
No 19
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.8e-40 Score=295.57 Aligned_cols=184 Identities=20% Similarity=0.242 Sum_probs=168.1
Q ss_pred cccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhh
Q psy10322 18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLH 86 (261)
Q Consensus 18 ~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~ 86 (261)
+++..+|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+ +|++|+++ +++.+++.|++
T Consensus 30 ~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~ 103 (246)
T 1iru_A 30 KAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKIT-----ENIGCVMTGMTADSRSQVQRARYEAANWKY 103 (246)
T ss_dssp HHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEEC-----CCEEEEEeccHHHHHHHHHHHHHHHHHHHH
Confidence 4444449999999999999999999999 5678889999999999 99999876 88899999999
Q ss_pred hcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhh
Q psy10322 87 EHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQV 162 (261)
Q Consensus 87 ~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~ 162 (261)
+++++|+++.+|+++++++ |.+| ++||+|++||||||++++|+||++||+|++.+++++|+|+|+.+++++||+.|
T Consensus 104 ~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 183 (246)
T 1iru_A 104 KYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV 183 (246)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhh
Confidence 9999999999999999985 5544 78999999999999767799999999999999999999999999999999987
Q ss_pred hcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322 163 GIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERDIYTGDG 240 (261)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd~~~g~~ 240 (261)
++ +||+|||++++++||..+.+|| .+|++
T Consensus 184 ------------------------------------------------~~~~~ms~eea~~la~~al~~~~~rd-~sg~~ 214 (246)
T 1iru_A 184 ------------------------------------------------KKKFDWTFEQTVETAITCLSTVLSID-FKPSE 214 (246)
T ss_dssp ------------------------------------------------TSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTS
T ss_pred ------------------------------------------------cccCCCCHHHHHHHHHHHHHHHhccc-CCCCc
Confidence 56 9999999999999999999999 88999
Q ss_pred EEEEEEEcCCEEEEee
Q psy10322 241 VHLCAITKDGIKEYNF 256 (261)
Q Consensus 241 v~i~~itkdg~~~~~~ 256 (261)
++|++|+++|++.+.+
T Consensus 215 i~v~vi~~~g~~~~~l 230 (246)
T 1iru_A 215 IEVGVVTVENPKFRIL 230 (246)
T ss_dssp EEEEEEETTEEEEEEC
T ss_pred EEEEEEECCCCeEEEC
Confidence 9999999999855544
No 20
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=7e-40 Score=291.35 Aligned_cols=176 Identities=20% Similarity=0.238 Sum_probs=166.6
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
||+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIA-----PKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPR 75 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEec-----CCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCC
Confidence 68999999999999999999999988889999999999 99999876 888899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+|+++++++|++ .+||+|++||||||++ +|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 76 v~~la~~l~~~l~~~-~~p~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~----------- 142 (234)
T 3unf_H 76 VATVTRILRQTLFRY-QGHVGASLVVGGVDLN-GPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRF----------- 142 (234)
T ss_dssp HHHHHHHHHHHHHHT-TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHHhc-CCCccEEEEEEEEeCC-CCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhcc-----------
Confidence 999999999999876 4699999999999975 599999999999999999999999999999999986
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||+|||++++++||..+.+||+.+|++++|++|++||++.
T Consensus 143 -------------------------------------~~~ms~eeA~~la~~al~~~~~~D~~sg~~iev~vi~~dg~~~ 185 (234)
T 3unf_H 143 -------------------------------------QPNMTLEAAQELLVEAITAGILSDLGSGGNVDACVITAGGAKL 185 (234)
T ss_dssp -------------------------------------CSSCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEESSCEEE
T ss_pred -------------------------------------CCCCCHHHHHHHHHHHHHHHHhhcCCCCCcEEEEEEECCCEEE
Confidence 8899999999999999999999999999999999999999876
Q ss_pred Ee
Q psy10322 254 YN 255 (261)
Q Consensus 254 ~~ 255 (261)
..
T Consensus 186 l~ 187 (234)
T 3unf_H 186 QR 187 (234)
T ss_dssp EE
T ss_pred eC
Confidence 54
No 21
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.1e-39 Score=294.68 Aligned_cols=175 Identities=21% Similarity=0.235 Sum_probs=164.0
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~-----d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~ 100 (261)
T 3nzj_H 26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRIS-----PKIWCAGAGTAADTEAVTQLIGSNIELHSLYTS 100 (261)
T ss_dssp ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEc-----CCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhC
Confidence 568999999999999999999999999999999999999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccc
Q psy10322 90 KVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSS 169 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~ 169 (261)
++++++.+|+++++++|++ .+||++++||||||++ +|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 101 ~~~~v~~~a~~l~~~l~~~-~~~~gv~llvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~------- 171 (261)
T 3nzj_H 101 REPRVVSALQMLKQHLFKY-QGHIGAYLIVAGVDPT-GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW------- 171 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHT-TTCSCEEEEEEEEETT-EEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC-------
T ss_pred CCCCHHHHHHHHHHHHHHh-cCcccEEEEEEEEeCC-CCEEEEECCCccEEecCeEEeccchHHHHHHHHHHh-------
Confidence 9999999999999999876 3699999999999975 599999999999999999999999999999999986
Q ss_pred cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcC
Q psy10322 170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkd 249 (261)
+++||+|||++++++||..+.+||..+|++++|++|++|
T Consensus 172 -----------------------------------------~~~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kd 210 (261)
T 3nzj_H 172 -----------------------------------------KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIG 210 (261)
T ss_dssp -----------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETT
T ss_pred -----------------------------------------ccCCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECC
Confidence 899999999999999999999999999999999999999
Q ss_pred C
Q psy10322 250 G 250 (261)
Q Consensus 250 g 250 (261)
|
T Consensus 211 g 211 (261)
T 3nzj_H 211 K 211 (261)
T ss_dssp S
T ss_pred C
Confidence 9
No 22
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=2.1e-39 Score=285.17 Aligned_cols=175 Identities=21% Similarity=0.219 Sum_probs=166.0
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++|+
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~-----d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRIS-----PKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPR 75 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEec-----CCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 68999999999999999999999989999999999999 99999876 888899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+++++++++|+++ +||++++||||||+ ++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 76 v~~~a~~l~~~l~~~~-~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~----------- 142 (222)
T 1ryp_I 76 VVSALQMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHW----------- 142 (222)
T ss_dssp HHHHHHHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHC-----------
T ss_pred HHHHHHHHHHHHhhcC-CCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhC-----------
Confidence 9999999999998874 79999999999997 4599999999999999999999999999999999986
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCC-EE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG-IK 252 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg-~~ 252 (261)
+++||+|||++++++||..+++||..+|++++|++|++|| ++
T Consensus 143 -------------------------------------~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~ 185 (222)
T 1ryp_I 143 -------------------------------------KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAE 185 (222)
T ss_dssp -------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEE
T ss_pred -------------------------------------CCCcCHHHHHHHHHHHHHHHHhccccCCCcEEEEEEECCCCEE
Confidence 7899999999999999999999999999999999999999 77
Q ss_pred EE
Q psy10322 253 EY 254 (261)
Q Consensus 253 ~~ 254 (261)
..
T Consensus 186 ~~ 187 (222)
T 1ryp_I 186 YL 187 (222)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 23
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.2e-39 Score=289.64 Aligned_cols=178 Identities=18% Similarity=0.242 Sum_probs=165.9
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 102 (244)
T 1ryp_C 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLN-----DKIAVAVAGLTADAEILINTARIHAQNYLKTYN 102 (244)
T ss_dssp HTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEEC-----CCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467999999999999999999999999877689999999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|+++++++|.+ +.|||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 103 ~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--- 179 (244)
T 1ryp_C 103 EDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY--- 179 (244)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhh---
Confidence 9999999999999999542 468999999999999557799999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++||.|||++++++||..+.+||..+|++++|++
T Consensus 180 ---------------------------------------------~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~v 214 (244)
T 1ryp_C 180 ---------------------------------------------KDDMKVDDAIELALKTLSKTTDSSALTYDRLEFAT 214 (244)
T ss_dssp ---------------------------------------------CTTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEE
T ss_pred ---------------------------------------------hcCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEE
Confidence 78999999999999999999999666799999999
Q ss_pred EE--cCCE
Q psy10322 246 IT--KDGI 251 (261)
Q Consensus 246 it--kdg~ 251 (261)
|+ +||.
T Consensus 215 i~~~~~~~ 222 (244)
T 1ryp_C 215 IRKGANDG 222 (244)
T ss_dssp EECCSSSS
T ss_pred EEeecCCC
Confidence 99 9986
No 24
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.5e-39 Score=292.68 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=168.1
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|++.++
T Consensus 28 v~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 102 (261)
T 1iru_C 28 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLN-----EDMACSVAGITSDANVLTNELRLIAQRYLLQYQ 102 (261)
T ss_dssp HTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEec-----CCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467999999999999999999999999988888899999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|+++++++|.++ .|||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 103 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--- 179 (261)
T 1iru_C 103 EPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDY--- 179 (261)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhh---
Confidence 99999999999999997653 67999999999999767799999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC-CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT-PVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~ 244 (261)
++ +||.|||++++++||..+.+||..+|++++|+
T Consensus 180 ---------------------------------------------~~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~ 214 (261)
T 1iru_C 180 ---------------------------------------------KEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIA 214 (261)
T ss_dssp ---------------------------------------------CTTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEE
T ss_pred ---------------------------------------------ccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEE
Confidence 78 99999999999999999999999999999999
Q ss_pred EEEcCCE
Q psy10322 245 AITKDGI 251 (261)
Q Consensus 245 ~itkdg~ 251 (261)
+|+++|.
T Consensus 215 vi~~~~~ 221 (261)
T 1iru_C 215 TLTRENG 221 (261)
T ss_dssp EEECCSS
T ss_pred EEEcCCC
Confidence 9999984
No 25
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2.1e-39 Score=286.34 Aligned_cols=180 Identities=17% Similarity=0.244 Sum_probs=165.3
Q ss_pred ccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhh
Q psy10322 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYL 85 (261)
Q Consensus 17 ~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~ 85 (261)
+++. ++|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+ +|++|+++ +++.+++.|+
T Consensus 25 ~~av-~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~ 97 (233)
T 1iru_B 25 LAAV-AGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPIT-----KHIGLVYSGMGPDYRVLVHRARKLAQQYY 97 (233)
T ss_dssp HHHH-HTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEEC-----CCEEEEEEEccHHHHHHHHHHHHHHHHHH
Confidence 4443 579999999999999999999998 4678889999999999 99999876 8888999999
Q ss_pred hhcCCcCCHHHHHHHHHHHH--hccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhh
Q psy10322 86 HEHNKVMSTTSLAKMISIMM--YGKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161 (261)
Q Consensus 86 ~~~g~~isv~~lA~~Is~~l--y~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~ 161 (261)
++++++++++.+|+++++++ |.++ ++||+|++||||||+ ++|+||++||.|++.++++.|+|+|+.+++++||+.
T Consensus 98 ~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~ 176 (233)
T 1iru_B 98 LVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKR 176 (233)
T ss_dssp HHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHH
Confidence 99999999999999999999 4443 689999999999994 569999999999999999999999999999999998
Q ss_pred hhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcE
Q psy10322 162 VGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241 (261)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v 241 (261)
| +++||.|||++++++||..+.+|| .+|+++
T Consensus 177 ~------------------------------------------------~~~ms~eea~~la~~al~~~~~~d-~sg~~i 207 (233)
T 1iru_B 177 Y------------------------------------------------NEDLELEDAIHTAILTLKESFEGQ-MTEDNI 207 (233)
T ss_dssp C------------------------------------------------CTTCCHHHHHHHHHHHHHTTCCSC-CCSSSE
T ss_pred h------------------------------------------------ccCCCHHHHHHHHHHHHHHHhhcc-CCCCCE
Confidence 6 789999999999999999999999 679999
Q ss_pred EEEEEEcCCEEE
Q psy10322 242 HLCAITKDGIKE 253 (261)
Q Consensus 242 ~i~~itkdg~~~ 253 (261)
+|++|++||++.
T Consensus 208 ~v~vi~~~g~~~ 219 (233)
T 1iru_B 208 EVGICNEAGFRR 219 (233)
T ss_dssp EEEEEETTEEEE
T ss_pred EEEEEECCCEEE
Confidence 999999999654
No 26
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=3.6e-39 Score=284.80 Aligned_cols=175 Identities=18% Similarity=0.185 Sum_probs=163.7
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+++ ++..++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 104 (233)
T 1yar_A 31 VKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLID-----DYVAAVTSGLVADARVLVDFARISAQQEKVTYG 104 (233)
T ss_dssp HTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEE-----TTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEec-----CCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467999999999999999999999997 57788999999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++++++.+|+++++++|.++ .|||+|++||||||+ ++|+||.+||.|++.++++.|+|+|+.+++++||+.|
T Consensus 105 ~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~--- 180 (233)
T 1yar_A 105 SLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREY--- 180 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHh---
Confidence 99999999999999998543 579999999999997 5699999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++||.|||++++++||..+.+||+ ++++++|++
T Consensus 181 ---------------------------------------------~~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~v 214 (233)
T 1yar_A 181 ---------------------------------------------KENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIAS 214 (233)
T ss_dssp ---------------------------------------------CTTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEE
T ss_pred ---------------------------------------------ccCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEE
Confidence 7899999999999999999999998 699999999
Q ss_pred EEcCCE
Q psy10322 246 ITKDGI 251 (261)
Q Consensus 246 itkdg~ 251 (261)
|++||.
T Consensus 215 i~~~~~ 220 (233)
T 1yar_A 215 ITVGNK 220 (233)
T ss_dssp EETTSC
T ss_pred EECCCC
Confidence 999983
No 27
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=3.2e-39 Score=278.10 Aligned_cols=177 Identities=23% Similarity=0.274 Sum_probs=165.0
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
||+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLH-----QRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPL 75 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEE-----TTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcC-----CCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 68999999999999999999999889999999999999 99999876 888899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceee-cCEEEEecChHHHHHHHHhhhhcccccccch
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER-ANFRAGGSSGALLQALLDNQVGIIQHSSKQM 172 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~-~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~ 172 (261)
++.+|+++++++|.+| +||+|++||||||++++|+||+ |+|++.+ ..+.++|+|+.+++++||+.|
T Consensus 76 v~~~a~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~---------- 142 (199)
T 3unf_N 76 VLAAANVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAY---------- 142 (199)
T ss_dssp HHHHHHHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhc----------
Confidence 9999999999999875 5999999999999877899999 9998755 567778999999999999987
Q ss_pred hhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEE
Q psy10322 173 KSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252 (261)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~ 252 (261)
+++||+|||++++++||..+.+||+.+|++++|++|++||++
T Consensus 143 --------------------------------------~~~ms~eea~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~ 184 (199)
T 3unf_N 143 --------------------------------------KPGMTPEECRRFTTNAITLAMNRDGSSGGVIYLVTITAAGVD 184 (199)
T ss_dssp --------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEE
T ss_pred --------------------------------------CCCCCHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCCEE
Confidence 799999999999999999999999999999999999999988
Q ss_pred EEeec
Q psy10322 253 EYNFP 257 (261)
Q Consensus 253 ~~~~~ 257 (261)
.+.++
T Consensus 185 ~~~l~ 189 (199)
T 3unf_N 185 HRVIL 189 (199)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 77664
No 28
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=3.4e-39 Score=286.47 Aligned_cols=176 Identities=18% Similarity=0.151 Sum_probs=164.8
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|.++|.++ +++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 96 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEID-----RHIGCAMSGLTADARSMIEHARTAAVTHNLYYD 96 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEE-----TTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEc-----CCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence 457999999999999999999999999877 88999999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhccc----------cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHH
Q psy10322 90 KVMSTTSLAKMISIMMYGKR----------FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLD 159 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r----------~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le 159 (261)
++++++.+|+++++++|.++ .|||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||
T Consensus 97 ~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le 176 (242)
T 1ryp_E 97 EDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELL 176 (242)
T ss_dssp SCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHH
Confidence 99999999999999987631 67999999999999667799999999999999999999999999999999
Q ss_pred hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322 160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD 239 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~ 239 (261)
+.| +++||.|||++++++||..+.+| ..+|+
T Consensus 177 ~~~------------------------------------------------~~~ms~eea~~la~~al~~~~~~-~~sg~ 207 (242)
T 1ryp_E 177 NEW------------------------------------------------HSSLTLKEAELLVLKILKQVMEE-KLDEN 207 (242)
T ss_dssp HHC------------------------------------------------CTTCCHHHHHHHHHHHHHHHCSS-CCCTT
T ss_pred Hhh------------------------------------------------ccCCCHHHHHHHHHHHHHHHhhc-cCCCC
Confidence 986 78999999999999999999999 66799
Q ss_pred cEEEEEEEcCCE
Q psy10322 240 GVHLCAITKDGI 251 (261)
Q Consensus 240 ~v~i~~itkdg~ 251 (261)
+++|++|++||.
T Consensus 208 ~i~v~vi~~~~~ 219 (242)
T 1ryp_E 208 NAQLSCITKQDG 219 (242)
T ss_dssp SEEEEEEETTTE
T ss_pred cEEEEEEECCCC
Confidence 999999999997
No 29
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=1.6e-38 Score=281.97 Aligned_cols=175 Identities=19% Similarity=0.278 Sum_probs=165.2
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFIS-----PNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPR 75 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEE-----TTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCC
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEec-----CCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 68999999999999999999999988889999999999 99999876 888899999999999999
Q ss_pred HHHHHHHHHHHHhccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcccccccchh
Q psy10322 94 TTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMK 173 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~ 173 (261)
++.+++++++.+|.++ +||++++||||||++ +|+||++||.|++.++++.|+|+|+..++++||+.|
T Consensus 76 v~~la~~l~~~l~~~~-~~~~v~llvaG~D~~-gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~----------- 142 (234)
T 1iru_I 76 VVTANRMLKQMLFRYR-GYIGAALVLGGVDVT-GPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKF----------- 142 (234)
T ss_dssp HHHHHHHHHHHHHHTT-TCSCEEEEEEEECSS-CEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSC-----------
T ss_pred HHHHHHHHHHHHHhcC-CCCceeEEEEEEcCC-CCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhc-----------
Confidence 9999999999998764 699999999999974 599999999999999999999999999999999976
Q ss_pred hcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 174 SVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+++||.|||++++++||..+.+||..+|++++|++|++||++.
T Consensus 143 -------------------------------------~~~ms~eeA~~la~~al~~a~~~d~~sg~~i~v~vi~k~g~~~ 185 (234)
T 1iru_I 143 -------------------------------------RPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDF 185 (234)
T ss_dssp -------------------------------------CTTCCHHHHHTHHHHHHHHHHHHCTTCCSCEEEEEEETTEEEC
T ss_pred -------------------------------------cCCCCHHHHHHHHHHHHHHHHHhcccCCCCEEEEEEECCcEEE
Confidence 7899999999999999999999999999999999999999864
Q ss_pred E
Q psy10322 254 Y 254 (261)
Q Consensus 254 ~ 254 (261)
.
T Consensus 186 ~ 186 (234)
T 1iru_I 186 L 186 (234)
T ss_dssp C
T ss_pred E
Confidence 3
No 30
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=1e-38 Score=283.46 Aligned_cols=175 Identities=17% Similarity=0.217 Sum_probs=163.7
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|.+.|.++ +++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 104 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEID-----AHIGCAMSGLIADAKTLIDKARVETQNHWFTYN 104 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEc-----CCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhC
Confidence 467999999999999999999999999877 89999999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHH--hccc-------cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHh
Q psy10322 90 KVMSTTSLAKMISIMM--YGKR-------FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDN 160 (261)
Q Consensus 90 ~~isv~~lA~~Is~~l--y~~r-------~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~ 160 (261)
++++++.+|+++++++ |.++ .|||+|++|||||| +++|+||++||.|++.++++.|+|+|+.+++++||+
T Consensus 105 ~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D-~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 183 (241)
T 1iru_E 105 ETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVD-EKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQE 183 (241)
T ss_dssp SCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEE-TTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEe-CCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHH
Confidence 9999999999999998 4333 57999999999999 567999999999999999999999999999999999
Q ss_pred hhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc
Q psy10322 161 QVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG 240 (261)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~ 240 (261)
.| +++||.|||++++++||..+.+| ..+|++
T Consensus 184 ~~------------------------------------------------~~~ms~eea~~la~~al~~~~~~-~~sg~~ 214 (241)
T 1iru_E 184 LY------------------------------------------------HKSMTLKEAIKSSLIILKQVMEE-KLNATN 214 (241)
T ss_dssp HC------------------------------------------------CTTCCHHHHHHHHHHHHHHHCSS-CCCTTS
T ss_pred Hh------------------------------------------------ccCCCHHHHHHHHHHHHHHHhhc-cCCCCC
Confidence 86 78999999999999999999999 678999
Q ss_pred EEEEEEEcCCE
Q psy10322 241 VHLCAITKDGI 251 (261)
Q Consensus 241 v~i~~itkdg~ 251 (261)
++|++|++||.
T Consensus 215 i~v~vi~~~~~ 225 (241)
T 1iru_E 215 IELATVQPGQN 225 (241)
T ss_dssp EEEEEECSSSC
T ss_pred EEEEEEECCCC
Confidence 99999999997
No 31
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=7.9e-39 Score=286.85 Aligned_cols=175 Identities=11% Similarity=0.076 Sum_probs=163.6
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+.|.++. ++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 103 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVD-----RHVGMAVAGLLADARSLADIAREEASNFRSNFG 103 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEEC-----CCEEEEEecChHHHHHHHHHHHHHHHHHHHHhC
Confidence 4579999999999999999999999998774 8899999999 99999876 88899999999999
Q ss_pred CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|+++++++|.++ ++||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 104 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--- 180 (254)
T 1iru_G 104 YNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQ--- 180 (254)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSC---
T ss_pred CCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhc---
Confidence 99999999999999997653 68999999999999667799999999999999999999999999999999975
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++||+|||++++++||..+.++|..++++++|++
T Consensus 181 ---------------------------------------------~~~ms~eea~~la~~al~~~~~~~~~~~~~iev~v 215 (254)
T 1iru_G 181 ---------------------------------------------MKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSW 215 (254)
T ss_dssp ---------------------------------------------GGGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEE
T ss_pred ---------------------------------------------cCCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEE
Confidence 67999999999999999999999887899999999
Q ss_pred EEcC
Q psy10322 246 ITKD 249 (261)
Q Consensus 246 itkd 249 (261)
|+++
T Consensus 216 i~~~ 219 (254)
T 1iru_G 216 VGEL 219 (254)
T ss_dssp CBTT
T ss_pred EEcC
Confidence 9988
No 32
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=3.5e-38 Score=279.54 Aligned_cols=176 Identities=20% Similarity=0.243 Sum_probs=164.5
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcCC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVMS 93 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~is 93 (261)
+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++++|+
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 75 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTD-----EYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 75 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeC-----CcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCC
Confidence 68999999999999999999999899999999999999 99999875 888899999999999999
Q ss_pred HHHHHHHHHHHHhccc---cCCcceEEEEEEEcCCCC-----eEEEEECCCCceeec--CEEEEecChHHHHHHHHhhhh
Q psy10322 94 TTSLAKMISIMMYGKR---FFPYYTSTIIAGLDPEGK-----GCVYSYDPIGHTERA--NFRAGGSSGALLQALLDNQVG 163 (261)
Q Consensus 94 v~~lA~~Is~~ly~~r---~~P~~v~~IVaG~D~~g~-----p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le~~~~ 163 (261)
++.+|++|++++|.++ ++||+|++||||||++++ |+||++||+|++.++ ++.|+|+|+.+++++||+.|
T Consensus 76 v~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~- 154 (235)
T 1q5q_H 76 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIY- 154 (235)
T ss_dssp HHHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhc-
Confidence 9999999999998864 689999999999998756 999999999999999 99999999999999999986
Q ss_pred cccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E
Q psy10322 164 IIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDG--V 241 (261)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~--v 241 (261)
+++||+|||++++++||..+.+||+.+|+. +
T Consensus 155 -----------------------------------------------~~~ms~eeA~~la~~al~~a~~~d~~sg~~~~i 187 (235)
T 1q5q_H 155 -----------------------------------------------SPDSDEETALRAAIESLYDAADDDSATGGPDLT 187 (235)
T ss_dssp -----------------------------------------------CTTCCHHHHHHHHHHHHHHHHHHCTTTCCCBTT
T ss_pred -----------------------------------------------CCCCCHHHHHHHHHHHHHHHHhhCcccCCcccc
Confidence 789999999999999999999999998753 2
Q ss_pred -----EEEEEEcCCEEE
Q psy10322 242 -----HLCAITKDGIKE 253 (261)
Q Consensus 242 -----~i~~itkdg~~~ 253 (261)
+|++|+++|++.
T Consensus 188 ~~~~~ev~vi~~~g~~~ 204 (235)
T 1q5q_H 188 RGIYPTAVTITQAGAVH 204 (235)
T ss_dssp TTBCCEEEEEETTEEEE
T ss_pred cccccEEEEEeCCCeEE
Confidence 999999999765
No 33
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=3.8e-38 Score=280.91 Aligned_cols=182 Identities=14% Similarity=0.161 Sum_probs=165.2
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|.++|.++.++ .+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 100 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVD-----RHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK 100 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEET-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEec-----CCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 457999999999999999999999999877654 59999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc--c--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK--R--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~--r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|++++++++.+ + ++||+|++||||||+ ++|+||++||.|++.++++.|+|+|+.+++++||+.+
T Consensus 101 ~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~--- 176 (244)
T 1ryp_G 101 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLV--- 176 (244)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhH---
Confidence 9999999999999999443 2 589999999999996 5699999999999999999999999999999999972
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+ .|+++||.|||++++++||..+.+||..++++++|++
T Consensus 177 ------------------------------------~------~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~v 214 (244)
T 1ryp_G 177 ------------------------------------D------HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISW 214 (244)
T ss_dssp ------------------------------------H------HCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEE
T ss_pred ------------------------------------h------hcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEE
Confidence 0 0378999999999999999999999999999999999
Q ss_pred EEc---CCEEEE
Q psy10322 246 ITK---DGIKEY 254 (261)
Q Consensus 246 itk---dg~~~~ 254 (261)
|++ +|++..
T Consensus 215 i~~~~~~g~~~~ 226 (244)
T 1ryp_G 215 CSLSETNGLHKF 226 (244)
T ss_dssp EETTTTTTSEEE
T ss_pred EEecCCCCeeee
Confidence 998 887654
No 34
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1e-37 Score=277.05 Aligned_cols=177 Identities=15% Similarity=0.237 Sum_probs=162.7
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+.|.++.+++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 99 (241)
T 1ryp_D 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKID-----SHVVLSFSGLNADSRILIEKARVEAQSHRLTLE 99 (241)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEec-----CCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence 467999999999999999999999999888777999999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhccc----cCCcceEEEEEEEcCC-CCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322 90 KVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPE-GKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI 164 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r----~~P~~v~~IVaG~D~~-g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~ 164 (261)
++|+++.+|+++++++|.++ .|||+|++||||||++ ++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 100 ~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~-- 177 (241)
T 1ryp_D 100 DPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY-- 177 (241)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTC--
T ss_pred CCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhh--
Confidence 99999999999999998642 4799999999999975 7799999999999999999999999999999999875
Q ss_pred ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322 165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244 (261)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~ 244 (261)
+. .+++||+|||++++++||..+.+ .+|++++|+
T Consensus 178 -------------------------------------~~------~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~ 211 (241)
T 1ryp_D 178 -------------------------------------DR------KEPPATVEECVKLTVRSLLEVVQ---TGAKNIEIT 211 (241)
T ss_dssp -------------------------------------CT------TSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEE
T ss_pred -------------------------------------hc------ccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEE
Confidence 10 06899999999999999999996 679999999
Q ss_pred EEEcCC
Q psy10322 245 AITKDG 250 (261)
Q Consensus 245 ~itkdg 250 (261)
+|++||
T Consensus 212 vi~~~~ 217 (241)
T 1ryp_D 212 VVKPDS 217 (241)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999997
No 35
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=4.5e-38 Score=288.65 Aligned_cols=180 Identities=19% Similarity=0.246 Sum_probs=168.0
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|.++|.++.+++.+|||+|+ +|++|+++ +++.+++.|++.++
T Consensus 62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~-----~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g 136 (294)
T 1q5r_H 62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTD-----EYSAAGIAGTAGIAIELVRLFAVELEHYEKIEG 136 (294)
T ss_dssp SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEE-----TTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEEC-----CcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhC
Confidence 468999999999999999999999999899999999999999 99999875 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhccc---cCCcceEEEEEEEcCCCC-----eEEEEECCCCceeec--CEEEEecChHHHHHHHH
Q psy10322 90 KVMSTTSLAKMISIMMYGKR---FFPYYTSTIIAGLDPEGK-----GCVYSYDPIGHTERA--NFRAGGSSGALLQALLD 159 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r---~~P~~v~~IVaG~D~~g~-----p~Ly~iDp~Gs~~~~--~~~a~G~g~~~~~~~Le 159 (261)
++|+++.+|++|++++|.++ .+||+|++||||||++++ |+||++||.|++.++ ++.|+|+|+.+++++||
T Consensus 137 ~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 137 VPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 99999999999999998754 489999999999998756 999999999999998 89999999999999999
Q ss_pred hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322 160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD 239 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~ 239 (261)
+.| +++||+|||++++++||..+.+||+.+|+
T Consensus 217 ~~y------------------------------------------------~~~ms~eEAi~la~~aL~~a~~rD~~sG~ 248 (294)
T 1q5r_H 217 KIY------------------------------------------------SPDSDEETALRAAIESLYDAADDDSATGG 248 (294)
T ss_dssp HHC------------------------------------------------CSSCCHHHHHHHHHHHHHHHHHHCTTTCC
T ss_pred Hhc------------------------------------------------cCCCCHHHHHHHHHHHHHHHHhhccccCC
Confidence 986 78999999999999999999999999875
Q ss_pred c--E-----EEEEEEcCCEEE
Q psy10322 240 G--V-----HLCAITKDGIKE 253 (261)
Q Consensus 240 ~--v-----~i~~itkdg~~~ 253 (261)
. + +|++|+++|+++
T Consensus 249 ~~~ir~i~~ev~vI~~~g~~~ 269 (294)
T 1q5r_H 249 PDLTRGIYPTAVTITQAGAVH 269 (294)
T ss_dssp CBTTTTBCCEEEEEETTEEEE
T ss_pred chhhcccCCEEEEEECCCEEE
Confidence 4 6 999999999765
No 36
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.8e-38 Score=285.57 Aligned_cols=178 Identities=23% Similarity=0.309 Sum_probs=163.4
Q ss_pred cCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcCC
Q psy10322 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHNK 90 (261)
Q Consensus 22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~ 90 (261)
.+|+|+|||+++||||||+|+|.+.+ ++.+++.+|||+|+ +|++|+++ +++.+++.|++.+++
T Consensus 36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~-----d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~ 109 (264)
T 3h4p_A 36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQID-----DHVAAATSGLVADARVLIDRARLEAQIYRLTYGE 109 (264)
T ss_dssp HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEE-----TTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCS
T ss_pred hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEec-----CcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCC
Confidence 57999999999999999999999997 57789999999999 99999876 788899999999999
Q ss_pred cCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhccc
Q psy10322 91 VMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQ 166 (261)
Q Consensus 91 ~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~~ 166 (261)
+|+++.+|++++++++.+ +++||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 110 ~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~---- 184 (264)
T 3h4p_A 110 EISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEY---- 184 (264)
T ss_dssp CCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHC----
T ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhc----
Confidence 999999999999998543 2589999999999995 5699999999999999999999999999999999987
Q ss_pred ccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322 167 HSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI 246 (261)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i 246 (261)
+++||+|||++++++||..+.+| .+|++++|++|
T Consensus 185 --------------------------------------------~~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi 218 (264)
T 3h4p_A 185 --------------------------------------------RDDITLDEGLELAITALTKANED--IKPENVDVCII 218 (264)
T ss_dssp --------------------------------------------CTTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEE
T ss_pred --------------------------------------------cCCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEE
Confidence 78999999999999999999987 68999999999
Q ss_pred EcCCEEEEee
Q psy10322 247 TKDGIKEYNF 256 (261)
Q Consensus 247 tkdg~~~~~~ 256 (261)
++++...+.+
T Consensus 219 ~~~~~~~~~l 228 (264)
T 3h4p_A 219 TVKDAQFKKI 228 (264)
T ss_dssp ETTTTEEEEC
T ss_pred EeCCCcEEEC
Confidence 9886554444
No 37
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=4.7e-38 Score=287.74 Aligned_cols=176 Identities=14% Similarity=0.132 Sum_probs=162.1
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|.++|.++.+ +.+|||+|+ +|++|+++ +++.+++.|++.++
T Consensus 31 v~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~-----d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~ 104 (288)
T 3nzj_F 31 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVD-----RHIGCVYSGLIPDGRHLVNRGREEAASFKKLYK 104 (288)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEET-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEc-----CCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999999987664 779999999 99999876 88899999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|+++++++|.+ +++||+|++||||||++ +|+||++||+|++.+++++|+|+|+.+++++||+.+
T Consensus 105 ~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~--- 180 (288)
T 3nzj_F 105 TPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLV--- 180 (288)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETT-EEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHH---
T ss_pred CcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCC-CCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhc---
Confidence 9999999999999999653 37899999999999975 599999999999999999999999999999999983
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
. .|+++||+|||++++++||..+.+||..+++.++|++
T Consensus 181 ------------------------------------~------~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~v 218 (288)
T 3nzj_F 181 ------------------------------------D------HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISW 218 (288)
T ss_dssp ------------------------------------H------HCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEE
T ss_pred ------------------------------------c------ccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEE
Confidence 0 0379999999999999999999999998999999999
Q ss_pred EEc
Q psy10322 246 ITK 248 (261)
Q Consensus 246 itk 248 (261)
|++
T Consensus 219 It~ 221 (288)
T 3nzj_F 219 CSL 221 (288)
T ss_dssp EET
T ss_pred EEe
Confidence 998
No 38
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=9.9e-38 Score=275.83 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=159.6
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+.|.. ++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 99 (233)
T 1ryp_F 28 IKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCD-----EHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFN 99 (233)
T ss_dssp HHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEc-----CCEEEEEEechHHHHHHHHHHHHHHHHHHHHHC
Confidence 45799999999999999999999999853 5889999999 99999876 88899999999999
Q ss_pred CcCCHHHHHHHHHHHHhc----cccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYG----KRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~----~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|++++++++. .+.|||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 100 ~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~--- 175 (233)
T 1ryp_F 100 RKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTL--- 175 (233)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHh---
Confidence 999999999999999953 23579999999999997 4599999999999999999999999999999999988
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CC--CHHHHHHHHHHHHHHHHhcc-cCCCCc
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PV--PLEKAISVVKDAFTAAAERD-IYTGDG 240 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--s~eea~~l~~~al~~~~~rd-~~~g~~ 240 (261)
++ +| |+|||++++++||..+. || ..++++
T Consensus 176 ---------------------------------------------~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~ 209 (233)
T 1ryp_F 176 ---------------------------------------------DTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDN 209 (233)
T ss_dssp ---------------------------------------------HHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTT
T ss_pred ---------------------------------------------ccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCc
Confidence 45 89 99999999999999999 88 678999
Q ss_pred EEEEEEEcC-CEEE
Q psy10322 241 VHLCAITKD-GIKE 253 (261)
Q Consensus 241 v~i~~itkd-g~~~ 253 (261)
++|++|++| |++.
T Consensus 210 i~v~vi~~~~~~~~ 223 (233)
T 1ryp_F 210 LSIAIVGKDTPFTI 223 (233)
T ss_dssp EEEEEEETTEEEEE
T ss_pred EEEEEEECCCCEEE
Confidence 999999999 5443
No 39
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.5e-37 Score=277.57 Aligned_cols=175 Identities=19% Similarity=0.215 Sum_probs=160.2
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHh-hhhhc
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQM-YLHEH 88 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~-y~~~~ 88 (261)
+.+|+|+|||+++||||||+|+|.+ +.++.+++.+|||+|+ +|++|+++ +++.+++. |++.+
T Consensus 28 v~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 101 (250)
T 1ryp_B 28 VKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLT-----PDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIY 101 (250)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEEC-----CCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999999999998 5678889999999999 99999876 77888888 99999
Q ss_pred CCcCCHHHHHHHHHHHHh----ccccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhc
Q psy10322 89 NKVMSTTSLAKMISIMMY----GKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGI 164 (261)
Q Consensus 89 g~~isv~~lA~~Is~~ly----~~r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~ 164 (261)
+.+++++.+++.+++++. .++++||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 102 ~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~-- 179 (250)
T 1ryp_B 102 GEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW-- 179 (250)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHh--
Confidence 999999999888888763 33578999999999999867899999999999999999999999999999999986
Q ss_pred ccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEE
Q psy10322 165 IQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244 (261)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~ 244 (261)
+++||.|||++++++||..+.+||. +|++++|+
T Consensus 180 ----------------------------------------------~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~ 212 (250)
T 1ryp_B 180 ----------------------------------------------NDELELEDAIHIALLTLKESVEGEF-NGDTIELA 212 (250)
T ss_dssp ----------------------------------------------CTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEE
T ss_pred ----------------------------------------------ccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEE
Confidence 7899999999999999999999865 79999999
Q ss_pred EEEcCC
Q psy10322 245 AITKDG 250 (261)
Q Consensus 245 ~itkdg 250 (261)
+|++||
T Consensus 213 vi~~~~ 218 (250)
T 1ryp_B 213 IIGDEN 218 (250)
T ss_dssp EECSCC
T ss_pred EEEccc
Confidence 999974
No 40
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=1e-37 Score=278.56 Aligned_cols=173 Identities=19% Similarity=0.248 Sum_probs=160.8
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+.| ++..++.+|||+|+ +|++|+++ +++.+++.|+++++
T Consensus 26 v~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 99 (248)
T 1iru_D 26 VKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALD-----DNVCMAFAGLTADARIVINRARVECQSHRLTVE 99 (248)
T ss_dssp HHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESS-----SSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEc-----CCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHC
Confidence 457999999999999999999999998 57778999999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc--c--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK--R--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~--r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|++++++++.+ + .|||+|++||||||++++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 100 ~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~--- 176 (248)
T 1iru_D 100 DPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNY--- 176 (248)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTC---
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhh---
Confidence 9999999999999999653 2 57999999999999667799999999999999999999999999999999976
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPV--PLEKAISVVKDAFTAAAERDIYTGDGVHL 243 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--s~eea~~l~~~al~~~~~rd~~~g~~v~i 243 (261)
+++| |.|||++++++||..+.+ .+|++++|
T Consensus 177 ---------------------------------------------~~~m~~s~eea~~la~~al~~~~~---~sg~~i~v 208 (248)
T 1iru_D 177 ---------------------------------------------TDEAIETDDLTIKLVIKALLEVVQ---SGGKNIEL 208 (248)
T ss_dssp ---------------------------------------------CSSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCE
T ss_pred ---------------------------------------------cccccCCHHHHHHHHHHHHHHHHc---CCCCcEEE
Confidence 7899 999999999999999997 47999999
Q ss_pred EEEEcCC
Q psy10322 244 CAITKDG 250 (261)
Q Consensus 244 ~~itkdg 250 (261)
++|++||
T Consensus 209 ~vi~~~g 215 (248)
T 1iru_D 209 AVMRRDQ 215 (248)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 9999998
No 41
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=5.1e-37 Score=273.52 Aligned_cols=176 Identities=16% Similarity=0.204 Sum_probs=161.4
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+.+. +.+++.+|||+|+ +|++|+++ +++.+++.|++.++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~~l-~~~~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 104 (246)
T 1j2p_A 31 VKRGATAIGIKCKEGVILIADKRVGSKL-LEKDTIEKIYKID-----EHICAATSGLVADARVLIDRARIEAQINRLTYD 104 (246)
T ss_dssp HHTSCCEEEEEETTEEEEEEECCCSCTT-BCGGGCCSEEECS-----SSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHcCCcEEEEEECCEEEEEEeccCCccc-cccCccCcEEEEC-----CCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhC
Confidence 4579999999999999999999999985 5578999999999 99999876 88889999999999
Q ss_pred CcCCHHHHHHHHHHHHh--ccc--cCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMY--GKR--FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly--~~r--~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++++++.+|++++++++ .++ .|||+|++|||||| ++|+||++||.|++.++++.|+|+|+.+++++||+.|
T Consensus 105 ~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--- 179 (246)
T 1j2p_A 105 IPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEY--- 179 (246)
T ss_dssp SCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHh---
Confidence 99999999999999994 433 57999999999999 5699999999999999999999999999999999986
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCA 245 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~ 245 (261)
+++||.|||++++++||..+.+| ..+|++++|++
T Consensus 180 ---------------------------------------------~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~v 213 (246)
T 1j2p_A 180 ---------------------------------------------RDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGY 213 (246)
T ss_dssp ---------------------------------------------CTTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEE
T ss_pred ---------------------------------------------ccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEE
Confidence 78999999999999999999998 78899999999
Q ss_pred EE-cC-CEEE
Q psy10322 246 IT-KD-GIKE 253 (261)
Q Consensus 246 it-kd-g~~~ 253 (261)
|+ ++ |++.
T Consensus 214 i~~~~~~~~~ 223 (246)
T 1j2p_A 214 VKVDDRTFKE 223 (246)
T ss_dssp EETTTCCCEE
T ss_pred EEcCCCceEE
Confidence 99 64 5543
No 42
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=1.3e-37 Score=285.22 Aligned_cols=180 Identities=21% Similarity=0.263 Sum_probs=148.2
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+.+|+|+|||+++||||||+|+|+++|.++.+++.+|||+|+ +|++|+++ +++.+++.|++.++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~-----d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~ 128 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITD-----DYTATGIAGTAAVAVEFARLYAVELEHYEKLEG 128 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeC-----CcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcC
Confidence 578999999999999999999999999889999999999999 99999875 78889999999999
Q ss_pred CcCCHHHHHHHHHHHHhccc---cCCcceEEEEEEEcCCCC-----eEEEEECCCCcee--ecCEEEEecChHHHHHHHH
Q psy10322 90 KVMSTTSLAKMISIMMYGKR---FFPYYTSTIIAGLDPEGK-----GCVYSYDPIGHTE--RANFRAGGSSGALLQALLD 159 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~r---~~P~~v~~IVaG~D~~g~-----p~Ly~iDp~Gs~~--~~~~~a~G~g~~~~~~~Le 159 (261)
.+++++.+|+++++++|.++ ++||+|++||||||++++ |+||++||.|++. ++++.|+|+|+.+++++||
T Consensus 129 ~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le 208 (291)
T 2jay_A 129 VPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMK 208 (291)
T ss_dssp SCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHH
Confidence 99999999999999999875 469999999999998766 9999999999988 8999999999999999999
Q ss_pred hhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHHHHHHhcccCCCC
Q psy10322 160 NQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD 239 (261)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al~~~~~rd~~~g~ 239 (261)
+.| +++||.|||++++++||..+++||+.+|+
T Consensus 209 ~~~------------------------------------------------~~~ms~eEAi~la~~aL~~a~~~D~~sg~ 240 (291)
T 2jay_A 209 KLY------------------------------------------------SQVTDGDSGLRVAVEALYDAADDDSATGG 240 (291)
T ss_dssp HHG------------------------------------------------GGCCSHHHHHHHHHHHHHHC---------
T ss_pred Hhc------------------------------------------------CCCCCHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 987 78999999999999999999999999886
Q ss_pred c--E-----EEEEEEcCCEEE
Q psy10322 240 G--V-----HLCAITKDGIKE 253 (261)
Q Consensus 240 ~--v-----~i~~itkdg~~~ 253 (261)
. + +|++|++||+++
T Consensus 241 ~e~vr~~~~~v~vi~~dg~~~ 261 (291)
T 2jay_A 241 PDLVRGIFPTAVIIDADGAVD 261 (291)
T ss_dssp -------CCEEEEEETTEEEE
T ss_pred cccccccCCEEEEEECCCeEE
Confidence 4 2 699999999765
No 43
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2e-37 Score=279.36 Aligned_cols=175 Identities=14% Similarity=0.128 Sum_probs=160.8
Q ss_pred ccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------HHHHHHHhhhhhcC
Q psy10322 21 SDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT-----------ITILPFQMYLHEHN 89 (261)
Q Consensus 21 ~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g 89 (261)
+++|+|+|||+++||||||+|+|.+.|.. ++.+|||+|+ +|++|+++ +++.+++.|++.++
T Consensus 29 v~~Gtt~vgi~~~dgVVlaaD~r~~~gl~---~~~~KI~~i~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~ 100 (263)
T 1iru_F 29 VKQGSATVGLKSKTHAVLVALKRAQSELA---AHQKKILHVD-----NHIGISIAGLTADARLLCNFMRQECLDSRFVFD 100 (263)
T ss_dssp HHHSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEE-----TTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCcEEEEEeCCEEEEEEecccccccc---cchhcEEEEc-----CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35799999999999999999999999852 5889999999 99999876 88899999999999
Q ss_pred CcCCHHHHHHHHHHHHhcc----ccCCcceEEEEEEEcCCCCeEEEEECCCCceeecCEEEEecChHHHHHHHHhhhhcc
Q psy10322 90 KVMSTTSLAKMISIMMYGK----RFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 90 ~~isv~~lA~~Is~~ly~~----r~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
++|+++.+|+++++++|.+ ..|||+|++||||||+ ++|+||++||+|++.++++.|+|+|+.+++++||+.|
T Consensus 101 ~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~--- 176 (263)
T 1iru_F 101 RPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHM--- 176 (263)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHh---
Confidence 9999999999999999742 3579999999999997 5699999999999999999999999999999999988
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC--CCCHHHHHHHHHHHHHHHHhcc-cCCCCcEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT--PVPLEKAISVVKDAFTAAAERD-IYTGDGVH 242 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~eea~~l~~~al~~~~~rd-~~~g~~v~ 242 (261)
++ +||+|||++++++||..+.+|| ..+|++++
T Consensus 177 ---------------------------------------------~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~ie 211 (263)
T 1iru_F 177 ---------------------------------------------SEFMECNLNELVKHGLRALRETLPAEQDLTTKNVS 211 (263)
T ss_dssp ---------------------------------------------HHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEE
T ss_pred ---------------------------------------------cccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEE
Confidence 44 8999999999999999999999 57899999
Q ss_pred EEEEEcC-CEE
Q psy10322 243 LCAITKD-GIK 252 (261)
Q Consensus 243 i~~itkd-g~~ 252 (261)
|++|+++ |++
T Consensus 212 v~vi~~~~~~~ 222 (263)
T 1iru_F 212 IGIVGKDLEFT 222 (263)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCCCeE
Confidence 9999999 444
No 44
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=7.3e-37 Score=274.35 Aligned_cols=181 Identities=12% Similarity=0.125 Sum_probs=154.3
Q ss_pred hhhcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------
Q psy10322 7 QILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT----------- 75 (261)
Q Consensus 7 ~~~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s----------- 75 (261)
|.........+.++ .+|+|+|||+++||||||+|+| +++.+|||+|+ +|++|+++
T Consensus 11 ~~~~~r~EYA~~av-~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~-----d~i~~~~aG~~aD~~~l~~ 76 (248)
T 3mi0_A 11 QAMRERSELARKGI-ARAKSVVALAYAGGVLFVAENP--------SRSLQKISELY-----DRVGFAAAGKFNEFDNLRR 76 (248)
T ss_dssp HHHHHHHHHHHHHH-HTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEE-----TTEEEEEEECHHHHHHHHH
T ss_pred HhcccchHHHHHHH-hCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEEC-----CCEEEEEccCHHHHHHHHH
Confidence 33333445556675 5799999999999999999999 46889999999 99999886
Q ss_pred HHHHHHHhhhhhcC-CcCCHHHHHHHHHHHH---hccccCCcceEEEEEEEcC---CCCeEEEEECCCCceee-cCEEEE
Q psy10322 76 ITILPFQMYLHEHN-KVMSTTSLAKMISIMM---YGKRFFPYYTSTIIAGLDP---EGKGCVYSYDPIGHTER-ANFRAG 147 (261)
Q Consensus 76 ~lr~~~~~y~~~~g-~~isv~~lA~~Is~~l---y~~r~~P~~v~~IVaG~D~---~g~p~Ly~iDp~Gs~~~-~~~~a~ 147 (261)
.++.+++.|++.++ .+++++.+|+++++.+ |+++++||+|++||||||+ +++|+||++||+|++.+ ++++|+
T Consensus 77 ~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~ 156 (248)
T 3mi0_A 77 GGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVM 156 (248)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEE
Confidence 44455566699999 8999999999999543 5457899999999999997 47799999999999995 999999
Q ss_pred ecChHHHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHH
Q psy10322 148 GSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAF 227 (261)
Q Consensus 148 G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al 227 (261)
|+|+.+++++||+.| +++||.|||++++++||
T Consensus 157 Gsgs~~a~~~Le~~y------------------------------------------------~~~mt~eeai~la~~aL 188 (248)
T 3mi0_A 157 GGTTEPIANALKESY------------------------------------------------AENASLTDALRIAVAAL 188 (248)
T ss_dssp SSCHHHHHHHHHHHC------------------------------------------------CTTCCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhhc------------------------------------------------CCCCCHHHHHHHHHHHH
Confidence 999999999999987 88999999999999999
Q ss_pred HHHH-------hcccCCCCcEEEEEEEcCC
Q psy10322 228 TAAA-------ERDIYTGDGVHLCAITKDG 250 (261)
Q Consensus 228 ~~~~-------~rd~~~g~~v~i~~itkdg 250 (261)
..++ +|+ .++++++|++|+++|
T Consensus 189 ~~~~~~~~~~~~~~-~~~~~iev~vv~~~g 217 (248)
T 3mi0_A 189 RAGSADTSGGDQPT-LGVASLEVAVLDANR 217 (248)
T ss_dssp HHC-------------CCTTEEEEEEETTS
T ss_pred HHHHhhcccCcccc-cCCCcEEEEEEECCC
Confidence 9999 676 568999999999998
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=5.5e-37 Score=276.14 Aligned_cols=181 Identities=13% Similarity=0.182 Sum_probs=158.1
Q ss_pred hhhcCcccccccccccCCceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEecCcCCCCeEEEehH-----------
Q psy10322 7 QILETPIQHHFSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFT----------- 75 (261)
Q Consensus 7 ~~~~~~~~~~~~~~~~~G~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I~~~~~~d~i~~~~s----------- 75 (261)
|.+..+....+.++ .+|+|+|||+++||||||+|+| +++.+|||+|+ +|++|+++
T Consensus 11 ~~~~~qvEYA~~av-~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~-----d~i~~~~aG~~aD~~~l~~ 76 (259)
T 1q5q_A 11 QIMRDRSELARKGI-ARGRSVVVLTFRDGVLFVAENP--------STALHKVSELY-----DRLGFAAVGKYNEFENLRR 76 (259)
T ss_dssp HHHHHHHHHHHHHH-HTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEE-----TTEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeC-----CCEEEEEccCHHHHHHHHH
Confidence 33333445556665 5799999999999999999999 37889999999 99999876
Q ss_pred HHHHHHHhhhhhcC-CcCCHHHHHHHHHHH---HhccccCCcceEEEEEEEc--C-CCCeEEEEECCCCcee-ecCEEEE
Q psy10322 76 ITILPFQMYLHEHN-KVMSTTSLAKMISIM---MYGKRFFPYYTSTIIAGLD--P-EGKGCVYSYDPIGHTE-RANFRAG 147 (261)
Q Consensus 76 ~lr~~~~~y~~~~g-~~isv~~lA~~Is~~---ly~~r~~P~~v~~IVaG~D--~-~g~p~Ly~iDp~Gs~~-~~~~~a~ 147 (261)
+++.+++.|.+.++ .+|+++.+|++++++ .|..+++||+|++|||||| + +++|+||++||+|++. ++++.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~ai 156 (259)
T 1q5q_A 77 AGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVM 156 (259)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEE
T ss_pred HHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEE
Confidence 66788888988888 499999999999995 4666789999999999999 3 5679999999999999 7899999
Q ss_pred ecChHHHHHHHHhhhhcccccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCCCCCHHHHHHHHHHHH
Q psy10322 148 GSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAF 227 (261)
Q Consensus 148 G~g~~~~~~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~eea~~l~~~al 227 (261)
|+|+..++++||+.| +++||+|||++++++||
T Consensus 157 G~gs~~a~~~Le~~~------------------------------------------------~~~ms~eea~~la~~al 188 (259)
T 1q5q_A 157 GGTTEPIATAMRESY------------------------------------------------RADLDLEAAVGIAVNAL 188 (259)
T ss_dssp SSSHHHHHHHHHHHC------------------------------------------------CTTCCHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHhhc------------------------------------------------cCCCCHHHHHHHHHHHH
Confidence 999999999999986 78999999999999999
Q ss_pred HHHH-----hcccCCCCcEEEEEEEcCC
Q psy10322 228 TAAA-----ERDIYTGDGVHLCAITKDG 250 (261)
Q Consensus 228 ~~~~-----~rd~~~g~~v~i~~itkdg 250 (261)
..+. +||+ +|++++|++|+++|
T Consensus 189 ~~~~~~~~~~rd~-sg~~iev~vi~~~~ 215 (259)
T 1q5q_A 189 RQGGAGEGEKRNV-DVASLEVAVLDQSR 215 (259)
T ss_dssp TTCC--------C-CSSCSEEEEEETTS
T ss_pred HHHhhcccccccC-CCCcEEEEEEECCC
Confidence 9999 9999 89999999999994
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.98 E-value=1.4e-31 Score=228.55 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=138.7
Q ss_pred cCCceEEEEEcCCeEEEEEecccccCce-eecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhc
Q psy10322 22 DNGGTTVAVAGPDYAIIASDTRLSAGYN-IYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEH 88 (261)
Q Consensus 22 ~~G~TvVGIk~kDGVVLAaDtr~s~g~~-i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~ 88 (261)
.+|+|+|||+++||||||+|+|++.|.+ +.+++.+|||+| + +|++++++ +++.+++.|+
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~y~--- 74 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFN-----GKVLAGFAGSVADAFTLFEKFEAKLEEYN--- 74 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETT-----TTEEEEECSCHHHHHHHHHHHHHHHHHTT---
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECC-----CCEEEEeCchHHHHHHHHHHHHHHHHHhc---
Confidence 5799999999999999999999999888 999999999999 9 99999886 7777888776
Q ss_pred CCcCCHHHHHHHHHHHHhccc-cCCcceEEEEEEEcCCCCeEEEEECCCCceee--cCEEEEecChHHHHHHHHhhhhcc
Q psy10322 89 NKVMSTTSLAKMISIMMYGKR-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTER--ANFRAGGSSGALLQALLDNQVGII 165 (261)
Q Consensus 89 g~~isv~~lA~~Is~~ly~~r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~--~~~~a~G~g~~~~~~~Le~~~~~~ 165 (261)
+ +.++.++ .+++.+++.+ .|||++++||| | +|+||++||.|++.+ +++.|+|+|+.+++++||+.|
T Consensus 75 g--~~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~--- 143 (180)
T 2z3b_A 75 G--NLKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALK--- 143 (180)
T ss_dssp T--CHHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHH---
T ss_pred C--ChHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhh---
Confidence 3 3344444 4567776655 56999999999 4 499999999999987 599999999999999999988
Q ss_pred cccccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCCC---CCCHHHHHHHHHHHHHHHHhcccCCCCcEE
Q psy10322 166 QHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDKT---PVPLEKAISVVKDAFTAAAERDIYTGDGVH 242 (261)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~s~eea~~l~~~al~~~~~rd~~~g~~v~ 242 (261)
++ +||.|| ++++||..+.+||+.+|++++
T Consensus 144 ---------------------------------------------~~~~~~mt~ee---l~~~al~~a~~rd~~sg~~i~ 175 (180)
T 2z3b_A 144 ---------------------------------------------KHAGESMSASE---IARAALETAGEICVYTNDQII 175 (180)
T ss_dssp ---------------------------------------------HHHGGGCCHHH---HHHHHHHHHHHHCTTCCSCCE
T ss_pred ---------------------------------------------hccCCCCCHHH---HHHHHHHHHHHhcCccCCeEE
Confidence 44 899999 578999999999999999999
Q ss_pred EEEE
Q psy10322 243 LCAI 246 (261)
Q Consensus 243 i~~i 246 (261)
|++|
T Consensus 176 v~~i 179 (180)
T 2z3b_A 176 LEEL 179 (180)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9998
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=99.97 E-value=2.9e-31 Score=224.81 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=139.1
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM 92 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i 92 (261)
+|+|||+++||||||+|+|++.|.++.+++.+|||+| + +|++++++ +++.+++.|++
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------ 69 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYN-----GKVLAGFAGGTADAFTLFELFERKLEMHQG------ 69 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETT-----TTEEEEEESCHHHHHHHHHHHHHHHHHTTT------
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECC-----CCEEEEeCccHHHHHHHHHHHHHHHHHhcC------
Confidence 6899999999999999999999988999999999999 9 99999886 77788887764
Q ss_pred CHHHHHHHHHHHHhcccc-CCcceEEEEEEEcCCCCeEEEEECCCCceeecC---EEEEecChHHHHHHHHhhhhccccc
Q psy10322 93 STTSLAKMISIMMYGKRF-FPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN---FRAGGSSGALLQALLDNQVGIIQHS 168 (261)
Q Consensus 93 sv~~lA~~Is~~ly~~r~-~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~---~~a~G~g~~~~~~~Le~~~~~~~~~ 168 (261)
+....+..+++.++++|. +|+ +++++|+| +|+||++||+|++.+++ +.|+|+|+.+++++||+.|
T Consensus 70 ~~~~~~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~------ 138 (174)
T 1g3k_A 70 HLLKSAVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALV------ 138 (174)
T ss_dssp CHHHHHHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHH------
T ss_pred cHHHHHHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhc------
Confidence 556677788888888774 454 57888887 59999999999999987 9999999999999999988
Q ss_pred ccchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEE
Q psy10322 169 SKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDK-TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT 247 (261)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~it 247 (261)
+ ++||.+ +++++||..+.+||+.+|++++|++|+
T Consensus 139 ------------------------------------------~~~~mt~~---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 139 ------------------------------------------ENTELSAH---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp ------------------------------------------HHCCCCHH---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred ------------------------------------------ccCCCCHH---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 5 789955 799999999999999999999999985
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.97 E-value=3.9e-31 Score=223.19 Aligned_cols=155 Identities=17% Similarity=0.175 Sum_probs=137.4
Q ss_pred ceEEEEEcCCeEEEEEecccccCceeecCCcCcEEEe-cCcCCCCeEEEehH-----------HHHHHHHhhhhhcCCcC
Q psy10322 25 GTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDH-YYYRPTYNFLMIFT-----------ITILPFQMYLHEHNKVM 92 (261)
Q Consensus 25 ~TvVGIk~kDGVVLAaDtr~s~g~~i~~~~~~KIf~I-~~~~~~d~i~~~~s-----------~lr~~~~~y~~~~g~~i 92 (261)
+|+|||+++||||||+|+|.+.|.++.+++.+|||+| + +|++++++ +++.+++.|+++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~-----~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~----- 70 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGE-----GKVLAGFAGSVADAMTLFDRFEAKLREWGGN----- 70 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETT-----TTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCC-----CCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----
Confidence 6899999999999999999999989999999999999 9 99999876 778888877744
Q ss_pred CHHHHHHHHHHHHhccc-cCCcceEEEEEEEcCCCCeEEEEECCCCceeecC--EEEEecChHHHHHHHHhhhhcccccc
Q psy10322 93 STTSLAKMISIMMYGKR-FFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERAN--FRAGGSSGALLQALLDNQVGIIQHSS 169 (261)
Q Consensus 93 sv~~lA~~Is~~ly~~r-~~P~~v~~IVaG~D~~g~p~Ly~iDp~Gs~~~~~--~~a~G~g~~~~~~~Le~~~~~~~~~~ 169 (261)
.++.++++.+ .+|++| .+||++++|+| | +|+||++||.|++.+++ +.|+|+|+.+++++||+.|
T Consensus 71 ~~~~~~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~------- 137 (171)
T 1m4y_A 71 LTKAAVELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALL------- 137 (171)
T ss_dssp HHHHHHHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhc-------
Confidence 2777777654 677766 45799999988 5 59999999999999987 9999999999999999988
Q ss_pred cchhhcccccccchhhhHHHHHhhhhhhhhhhccccCCCCCC-CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy10322 170 KQMKSVLGGIRTHDLALTREINALSSKLTILLGFRNQENVDK-TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAI 246 (261)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~i 246 (261)
+ ++||. ++++++||..+.+||+.+|++++|+++
T Consensus 138 -----------------------------------------~~~~ms~---~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 138 -----------------------------------------RNTDLSA---REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp -----------------------------------------HHCCCCH---HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred -----------------------------------------ccCCCCH---HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 5 78986 678999999999999999999999864
No 49
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=37.38 E-value=59 Score=27.41 Aligned_cols=39 Identities=26% Similarity=0.367 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 211 KTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 211 ~~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
.+.++.|+|.+++..++..+.++ |..+.|+|++..|...
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~ll 100 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGNTL 100 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCCEE
Confidence 67899999999999999999996 5689999999988754
No 50
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=29.76 E-value=53 Score=26.10 Aligned_cols=38 Identities=16% Similarity=0.154 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCEEE
Q psy10322 212 TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253 (261)
Q Consensus 212 ~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~~~ 253 (261)
+.+|.++|.+++..+...+.++ |..+.|+|++..|...
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll 47 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTL 47 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEE
Confidence 5689999999999999999885 5689999999888754
No 51
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=29.23 E-value=96 Score=24.20 Aligned_cols=40 Identities=20% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCE
Q psy10322 212 TPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251 (261)
Q Consensus 212 ~~~s~eea~~l~~~al~~~~~rd~~~g~~v~i~~itkdg~ 251 (261)
.+++++..++.+.+||..+..+......++++.+=.+.|-
T Consensus 16 KgI~~e~v~eaie~AL~~A~kk~~g~~~~~~V~id~~tG~ 55 (129)
T 2kwp_A 16 KALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGD 55 (129)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTE
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCCe
Confidence 6899999999999999999998766667777765555563
No 52
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=20.04 E-value=81 Score=21.99 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcc
Q psy10322 212 TPVPLEKAISVVKDAFTAAAERD 234 (261)
Q Consensus 212 ~~~s~eea~~l~~~al~~~~~rd 234 (261)
.+||.|+|.++.++.++..+-||
T Consensus 28 ~~ls~EQAqe~Lve~~rQmMike 50 (63)
T 2q8v_A 28 SAMSLQEARELLLQASRLLMMKD 50 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999888776
Done!