RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10322
(261 letters)
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 150 bits (380), Expect = 9e-46
Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 38/252 (15%)
Query: 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY----RPTYN 69
F+PY DNGGT + +AG D+A++A DTR Y+I +R + K+F D+
Sbjct: 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADG 61
Query: 70 FLMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGC 129
++ + ++K +S S A+ I ++YGKRFFPYY TIIAGLD +GKG
Sbjct: 62 DALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGA 121
Query: 130 VYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTRE 189
VYS+DP+G ER RAGG++ +L+ LDNQV
Sbjct: 122 VYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEP------------------- 162
Query: 190 INALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKD 249
G + + +E+ I +V+D+FT+A ER I GDG+ + +TKD
Sbjct: 163 ------------GTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKD 210
Query: 250 GIKEYNFPLRKD 261
G+++ + L++D
Sbjct: 211 GVRKEFYELKRD 222
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 133 bits (335), Expect = 4e-39
Identities = 106/251 (42%), Positives = 148/251 (58%), Gaps = 45/251 (17%)
Query: 17 FSPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYY------RPTYNF 70
FSPY NGGT +A+AG D+AI+ASDTRLS G++I+TR+ K + +
Sbjct: 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDC 61
Query: 71 LMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCV 130
L + I +MY H +NK M+T ++A M+S ++Y +RFFPYY II GLD EGKG V
Sbjct: 62 LTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAV 121
Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREI 190
YS+DP+G +R +F+AGGS+ A+LQ LLDNQV
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQV---------------------------- 153
Query: 191 NALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
GF+N +NV+ P+ L++A+ +VKD F +AAERD+YTGD + +C +TK+G
Sbjct: 154 -----------GFKNMQNVEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG 202
Query: 251 IKEYNFPLRKD 261
I+E LRKD
Sbjct: 203 IREETVSLRKD 213
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 118 bits (297), Expect = 2e-33
Identities = 49/249 (19%), Positives = 92/249 (36%), Gaps = 53/249 (21%)
Query: 19 PYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPTY---NFLMI 73
P S NGG VA+ G D IA D RL + + + K+F H + T + +
Sbjct: 3 PSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYGHVFLGITGLATDVTTL 62
Query: 74 FTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPE-GKGCVYS 132
+ +Y + + + + +++S +Y +RF PY+ ++AG++ + GK +
Sbjct: 63 NEMFRYKTNLYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 122
Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
+D IG + A + S Q+ +
Sbjct: 123 FDLIGCIDEAKDFIVSGTA-----------------SDQLFGMC---------------- 149
Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
E++ + + E + A AA+RD +G G + I KD +
Sbjct: 150 --------------ESLYEPNLEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDEVV 195
Query: 253 EYNFPLRKD 261
+ +R+D
Sbjct: 196 KRYLKMRQD 204
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 114 bits (285), Expect = 9e-32
Identities = 53/251 (21%), Positives = 90/251 (35%), Gaps = 54/251 (21%)
Query: 18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFL 71
S S NGG +A+ G + IA+D R + T + K+F D Y +
Sbjct: 1 SIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQ 60
Query: 72 MIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGC-V 130
+ +Y + + + +L M++ ++Y KRF PYYT +IAGLDP+ +
Sbjct: 61 TVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFI 120
Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREI 190
S D IG ++ + + ++QM +
Sbjct: 121 CSLDLIGCP-----------------MVTDDFVVSGTCAEQMYGMC-------------- 149
Query: 191 NALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
E++ + + + + A A +RD +G GV + I KD
Sbjct: 150 ----------------ESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 193
Query: 251 IKEYNFPLRKD 261
I R D
Sbjct: 194 ITTRTLKARMD 204
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 100 bits (251), Expect = 9e-27
Identities = 39/241 (16%), Positives = 75/241 (31%), Gaps = 56/241 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF--DHYYYRPT----YNFLMIFTI 76
G + +AV D I+ +D+R + G I R KL + + I I
Sbjct: 8 LGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADI 67
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPI 136
++Y ++ ST + A + + Y + I+AG D + KG VY+
Sbjct: 68 VQYHLELYTSQYGT-PSTETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLG 125
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G + + GS + D
Sbjct: 126 GSVHKLPYAIAGSGSTFIYGYCDKN----------------------------------- 150
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNF 256
+ + E+ + +K + + A + D +G + + +T G++ F
Sbjct: 151 -------------FRENMSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVERLIF 197
Query: 257 P 257
Sbjct: 198 Y 198
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 100 bits (249), Expect = 2e-26
Identities = 44/238 (18%), Positives = 74/238 (31%), Gaps = 55/238 (23%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIFTITILP-- 80
T +AV ++ +D+R + G I R KL D + + + +
Sbjct: 2 TIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTY 61
Query: 81 -FQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
+ E N+ + A + M Y + IIAG DP+ G VYS G
Sbjct: 62 QLGFHSIELNEPPLVHTAASLFKEMCY-RYREDLMAGIIIAGWDPQEGGQVYSVPMGGMM 120
Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
R +F GGS + + +D
Sbjct: 121 VRQSFAIGGSGSSYIYGYVDAT-------------------------------------- 142
Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFP 257
+ + E+ + +A A ERD +G + L AI + G++
Sbjct: 143 ----------YREGMTKEECLQFTANALALAMERDGSSGGVIRLAAIAESGVERQVLL 190
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 92.6 bits (229), Expect = 1e-23
Identities = 42/236 (17%), Positives = 85/236 (36%), Gaps = 54/236 (22%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
TTV + D ++A++ R + G I ++ K++ D + + I +
Sbjct: 2 TTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKI 61
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
+Y + + ++A + S ++ R+FPY +I G+D EGK G
Sbjct: 62 EANLYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDPIGGAI 121
Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
E + A GS +L+++
Sbjct: 122 EEKDIVATGSGSLTAYGVLEDR-------------------------------------- 143
Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
+ +++A+ + A +A +RD +GDG+ + IT+D +Y+
Sbjct: 144 ----------FTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKITEDEFYQYS 189
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 89.4 bits (221), Expect = 3e-22
Identities = 40/235 (17%), Positives = 79/235 (33%), Gaps = 54/235 (22%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
TT+A I+A D+R +AG + ++ ++ + T
Sbjct: 2 TTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGS 61
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
+++ + +S + +K++S ++Y + T+I G + +Y D G
Sbjct: 62 QCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTR 121
Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
+ + GS +LD+
Sbjct: 122 LKGDIFCVGSGQTFAYGVLDSNY------------------------------------- 144
Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
K + +E A+ + K + AAA RD Y+G V+L +T+DG +
Sbjct: 145 -----------KWDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYH 188
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 89.0 bits (220), Expect = 6e-22
Identities = 34/246 (13%), Positives = 76/246 (30%), Gaps = 57/246 (23%)
Query: 18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTYNFLMIF 74
P G + +++ + IIA+D S G + +L D+ + + +
Sbjct: 3 QPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQ 61
Query: 75 TIT-ILPFQMYLHEHN-------KVMSTTSLAKMISIMMYGK--RFFPYYTSTIIAGLDP 124
I +L + + ++ + + + + + ++ +MY + + P + + I+AG+
Sbjct: 62 HIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQS 121
Query: 125 EGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDL 184
G + + +G T + A G + LL V
Sbjct: 122 NGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV---------------------- 159
Query: 185 ALTREINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLC 244
D ++ A + +A RD + L
Sbjct: 160 ---------------------DRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLA 198
Query: 245 AITKDG 250
I K+
Sbjct: 199 IIDKNT 204
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 85.6 bits (211), Expect = 5e-21
Identities = 34/237 (14%), Positives = 70/237 (29%), Gaps = 57/237 (24%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
+ + D I+AS ++ G ++ K H + +
Sbjct: 3 IILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQA 62
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMM--YGKRFFPYYTSTIIAGLDPEGKGCV-YSYDPI 136
Q+Y + +S +++ + + + PY + +I G D + Y D +
Sbjct: 63 NIQLYSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYL 122
Query: 137 GHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSK 196
G + A G SG +LLD+
Sbjct: 123 GTKVELPYGAHGYSGFYTFSLLDHH----------------------------------- 147
Query: 197 LTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
+ + E+ + ++K +R GV + + KDGI++
Sbjct: 148 -------------YRPDMTTEEGLDLLKLCVQELEKRMPMDFKGVIVKIVDKDGIRQ 191
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 85.6 bits (211), Expect = 6e-21
Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 55/235 (23%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
TT+A I+A+D+R +AG I ++ K+ + + +
Sbjct: 2 TTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLAR 61
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
++Y + + +S + +K+++ M+Y + T+I G D G G Y D G+
Sbjct: 62 QCRIYELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDKRGPGLYY-VDSEGNR 120
Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
+ GS ++D
Sbjct: 121 ISGATFSVGSGSVYAYGVMDRGY------------------------------------- 143
Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
+ +E+A + + A A RD Y+G V+L + +DG
Sbjct: 144 -----------SYDLEVEQAYDLARRAIYQATYRDAYSGGAVNLYHVREDGWIRV 187
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 82.9 bits (204), Expect = 9e-20
Identities = 34/246 (13%), Positives = 69/246 (28%), Gaps = 57/246 (23%)
Query: 18 SPYSDNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY----RPTYNF 70
+P G + + V +IA+D S G R S++ +
Sbjct: 3 NPMV-TGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQ 61
Query: 71 LMIFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGK--RFFPYYTSTIIAGLDPEGKG 128
+ + + L S ++ ++ MY + + P + + +I G +G+
Sbjct: 62 YLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYA-DGES 120
Query: 129 CVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTR 188
+ D +G A A G L Q LL + S+
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQ------------------ 162
Query: 189 EINALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITK 248
+A +V+ RD + + +T+
Sbjct: 163 ----------------------------TEARDLVERCMRVLYYRDARSYNRFQTATVTE 194
Query: 249 DGIKEY 254
G++
Sbjct: 195 KGVEIE 200
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 82.5 bits (203), Expect = 1e-19
Identities = 35/233 (15%), Positives = 77/233 (33%), Gaps = 56/233 (24%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
T V D ++ +DTR + G + + SK+ + Y + M +
Sbjct: 2 TIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISS 61
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
+++ ++ + +M+ M + + ++ G+D G YS P G T
Sbjct: 62 NLELHSLSTGRLPRVVTANRMLK-QMLFRYRGYIGAALVLGGVDVTGPHL-YSIYPHGST 119
Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
++ + GS A+ +++
Sbjct: 120 DKLPYVTMGSGSLAAMAVFEDK-------------------------------------- 141
Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
+ + E+A ++V +A A D+ +G + LC I+K+ +
Sbjct: 142 ----------FRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLD 184
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 81.1 bits (199), Expect = 2e-19
Identities = 34/245 (13%), Positives = 71/245 (28%), Gaps = 57/245 (23%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYY---YRPTYNFLMIFTITIL 79
+ + GPDY ++ASD ++ + K+F + + +
Sbjct: 3 YLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQK 62
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMM--YGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIG 137
Q+Y + +S T+ A + + PY+ + ++AG D +Y D +
Sbjct: 63 NVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLA 122
Query: 138 HTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKL 197
+A F + + S
Sbjct: 123 ALAKAPF------------------AAHGYGAFLTLS----------------------- 141
Query: 198 TILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY-NF 256
+ + E+A+ +++ +R I + I K+GI + N
Sbjct: 142 -------ILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTFSVRIIDKNGIHDLDNI 194
Query: 257 PLRKD 261
K
Sbjct: 195 SFPKQ 199
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 79.4 bits (195), Expect = 3e-18
Identities = 31/244 (12%), Positives = 73/244 (29%), Gaps = 58/244 (23%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY---NFLMIFTI 76
+ GT + + D ++A++ ++++ KL+ D + ++
Sbjct: 30 HAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINT 89
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVYS 132
+ Q YL +N+ + L + +S + G P+ S I AG D +Y+
Sbjct: 90 ARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYT 149
Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
+P G+ + ++ +++L
Sbjct: 150 SNPSGNYTGWKAI------------------SVGANTSAAQTLL---------------- 175
Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
+ K + ++ AI + + + T D + I K
Sbjct: 176 --------------QMDYKDDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND 221
Query: 253 EYNF 256
+
Sbjct: 222 GEVY 225
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 78.2 bits (192), Expect = 5e-18
Identities = 30/243 (12%), Positives = 60/243 (24%), Gaps = 53/243 (21%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR---PTYNFLMIFTI 76
++AV G D ++ S ++ + S +F P +
Sbjct: 29 TNINSLAVRGKDCTVVISQKKVPDKL-LDPTTVSYIFCISRTIGMVVNGPIPDARNAALR 87
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYS 132
+ +++ M LAK ++ + P +D E +Y
Sbjct: 88 AKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYK 147
Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
DP G+ A G + L+N
Sbjct: 148 TDPAGYYVGYKATATGPKQQEITTNLENH------------------------------- 176
Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
F+ + EK + A + + + + + TKD
Sbjct: 177 ----------FKKSKIDHINEESWEKVVEFAITHMIDALGTEF-SKNDLEVGVATKDKFF 225
Query: 253 EYN 255
+
Sbjct: 226 TLS 228
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 77.9 bits (191), Expect = 6e-18
Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 56/235 (23%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
T V V + +IA+DTR + G + + +KL + + + +
Sbjct: 2 TIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGS 61
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
+++ ++ S +M+ ++ K I+AG+DP G +S G T
Sbjct: 62 NIELHSLYTSREPRVVSALQMLKQHLF-KYQGHIGAYLIVAGVDPTGSHL-FSIHAHGST 119
Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
+ + + GS A+L++
Sbjct: 120 DVGYYLSLGSGSLAAMAVLESHW------------------------------------- 142
Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEY 254
K + E+AI + DA A D+ +G V +C + EY
Sbjct: 143 -----------KQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEY 186
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 77.1 bits (189), Expect = 9e-18
Identities = 39/237 (16%), Positives = 82/237 (34%), Gaps = 57/237 (24%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYY---RPTYNFLMIFTITIL 79
TTV + D I+A++ R++ I + KLF + + ++
Sbjct: 2 TTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKA 61
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHT 139
++Y + M ++A ++S M+ ++ PY ++ G+D S D G +
Sbjct: 62 ELELYRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDTAPHVF--SIDAAGGS 119
Query: 140 ERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTI 199
+ + GS + +L++Q
Sbjct: 120 VEDIYASTGSGSPFVYGVLESQ-------------------------------------- 141
Query: 200 LLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAIT-KDGIKEYN 255
+ +++ + +V A +AA +RD +G + + IT KDG +
Sbjct: 142 ----------YSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLP 188
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 77.0 bits (189), Expect = 2e-17
Identities = 28/242 (11%), Positives = 70/242 (28%), Gaps = 57/242 (23%)
Query: 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPTY---NFLMIFT 75
+ GT + + D ++A++ R K++ + + ++
Sbjct: 28 GHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTN 87
Query: 76 ITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVY 131
L Q YL ++ + + L + + F P+ S + G D +Y
Sbjct: 88 ELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLY 147
Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
DP G+ G++ A ++L
Sbjct: 148 QSDPSGNYGGWKATCIGNNSAAAVSMLK-------------------------------- 175
Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
++ + + L+ A+++ + + + V + +T++
Sbjct: 176 ---------------QDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENG 220
Query: 252 KE 253
K
Sbjct: 221 KT 222
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 69.3 bits (169), Expect = 1e-14
Identities = 17/150 (11%), Positives = 41/150 (27%), Gaps = 11/150 (7%)
Query: 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR---PTYNFLMIFT 75
+N T + + D + + + +LF H + +
Sbjct: 31 ENSSTAIGIRCKDGVVFGVEKLVL-SKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLAD 89
Query: 76 ITILPFQMYLHEHNKVMSTTSLAKMISIMM----YGKRFFPYYTSTIIAGLDPEGKGCVY 131
I + + LA +++ + P+ S ++ +Y
Sbjct: 90 IAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLY 149
Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQ 161
DP G + A G + + ++
Sbjct: 150 MIDPSGVSYGYWGCAIGKARQAAKTEIEKL 179
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 69.4 bits (169), Expect = 1e-14
Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 12/150 (8%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR----PTYNFLMIFT 75
G T++ + + +IA++ + S+ + SK+ +++
Sbjct: 30 QGVTSLGIKATNGVVIATEKKSSSPL-AMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDK 88
Query: 76 ITILPFQMYLHEHNKVMSTTSLAKMISIMM----YGKRFFPYYTSTIIAGLDPEGKGCVY 131
+ Y + + T L ++ +M P+ S +IAG D +Y
Sbjct: 89 SRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLY 148
Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQ 161
DP G A G + L+ +
Sbjct: 149 QVDPSGSYFPWKATAIGKGSVAAKTFLEKR 178
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 68.5 bits (167), Expect = 2e-14
Identities = 28/249 (11%), Positives = 65/249 (26%), Gaps = 57/249 (22%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR---PTYNFLMIFTI 76
NG T++ + D + A + +++ + + K+ H + +
Sbjct: 29 NGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVNR 87
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVYS 132
+ + + + A + + + P+ STI G+D G +Y
Sbjct: 88 GREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNG-AHLYM 146
Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
+P G A G +A L+
Sbjct: 147 LEPSGSYWGYKGAATGKGRQSAKAELEK-------------------------------- 174
Query: 193 LSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIK 252
L + E + +A+ A E + + + +
Sbjct: 175 --------LVDHHPEGLS-----AREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETN 221
Query: 253 EYNFPLRKD 261
+ ++ D
Sbjct: 222 GLHKFVKGD 230
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 67.6 bits (164), Expect = 3e-14
Identities = 38/252 (15%), Positives = 69/252 (27%), Gaps = 71/252 (28%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYY---YRPTYNFLMIFTITIL 79
T VA+ ++A D R + G I +R+ K++ ++ + + + +
Sbjct: 2 TIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAV 61
Query: 80 PFQMYLHEHNKVMSTTSLAKMISIMMY--------GKRFFPYYTSTIIAGLDPEGKGCVY 131
+ Y ++ A ++ M+ G P + D G +
Sbjct: 62 ELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIV 121
Query: 132 SYDPIGH--TERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTRE 189
SYD +G ERA + A GS ++ L
Sbjct: 122 SYDVVGGRYEERAGYHAVGSGSLFAKSALKKI---------------------------- 153
Query: 190 INALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGD-------GVH 242
E A+ ++ AA+ D TG
Sbjct: 154 --------------------YSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPT 193
Query: 243 LCAITKDGIKEY 254
IT+ G
Sbjct: 194 AVTITQAGAVHV 205
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 65.1 bits (158), Expect = 1e-13
Identities = 27/216 (12%), Positives = 52/216 (24%), Gaps = 51/216 (23%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYL 85
T + V ++ D +++ G + K+ + F + F +
Sbjct: 2 TILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFE 61
Query: 86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFR 145
+ + + A + + ++ D E + S + +
Sbjct: 62 AKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKEN-IFIISGNGEVIQPDDDAA 120
Query: 146 AGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRN 205
A GS G A
Sbjct: 121 AIGSGGPYALAAAK--------------------------------------------AL 136
Query: 206 QENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241
N D + A +V+ A T A E IYT +
Sbjct: 137 LRNTDLS------AREIVEKAMTIAGEICIYTNQNI 166
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 66.3 bits (161), Expect = 1e-13
Identities = 29/244 (11%), Positives = 67/244 (27%), Gaps = 63/244 (25%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYR--------PTYNFLMIF 74
G +V + + ++A++ + + R K+ + P Y L+
Sbjct: 30 GGAPSVGIKAANGVVLATEKKQKSIL-YDERSVHKVEPITKHIGLVYSGMGPDYRVLVHR 88
Query: 75 TITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRF---FPYYTSTIIAGLDPEGKGCVY 131
+ Q Y + + + T L + ++ +M + +++ EG+ ++
Sbjct: 89 ARKLA--QQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLF 146
Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREIN 191
DP G A G + + L+ +
Sbjct: 147 QSDPSGAYFAWKATAMGKNYVNGKTFLEKR------------------------------ 176
Query: 192 ALSSKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGI 251
+ LE AI + E + T D + + + G
Sbjct: 177 ------------------YNEDLELEDAIHTAILTLKESFEGQM-TEDNIEVGICNEAGF 217
Query: 252 KEYN 255
+
Sbjct: 218 RRLT 221
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 66.2 bits (161), Expect = 1e-13
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 11/149 (7%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT---YNFLMIFTI 76
G T V V G D ++ + + S R K+ D+ + ++
Sbjct: 27 KGSTAVGVRGRDIVVLGVEKK-SVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINR 85
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMY----GKRFFPYYTSTIIAGLDPEGKGCVYS 132
+ Q + ++ + + I+ + P+ S +I G D +G +Y
Sbjct: 86 ARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQ 145
Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQ 161
DP G A G ++ L+
Sbjct: 146 TDPSGTYHAWKANAIGRGAKSVREFLEKN 174
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 66.2 bits (161), Expect = 1e-13
Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 11/170 (6%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR-----PTYNFLMIF 74
G V V G + ++ + R + SK+ H L+
Sbjct: 27 RGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEK 86
Query: 75 TITILPFQ--MYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEG-KGCVY 131
T +A + P+ ST+IAG DP + +Y
Sbjct: 87 ARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLY 146
Query: 132 SYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRT 181
+P G + + G + ++ L+ + + + V +R+
Sbjct: 147 QTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRS 196
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 66.2 bits (161), Expect = 1e-13
Identities = 19/147 (12%), Positives = 46/147 (31%), Gaps = 8/147 (5%)
Query: 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYY---RPTYNFLMIFTITI 78
G TV + +A++ + R + + ++ + +H T + ++
Sbjct: 27 KQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTADARLLCNFMR 86
Query: 79 LPFQMYLHEHNKVMSTTSLAKMISIMMYGKR----FFPYYTSTIIAGLDPEGKGCVYSYD 134
++ + + L +I PY +IAG D G ++
Sbjct: 87 QECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGP-HIFQTC 145
Query: 135 PIGHTERANFRAGGSSGALLQALLDNQ 161
P + + G+ + L+
Sbjct: 146 PSANYFDCRAMSIGARSQSARTYLERH 172
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 64.6 bits (157), Expect = 6e-13
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 12/180 (6%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT-------YNFLM 72
G T+VAV G D A+I + ++ + + + LF ++ T
Sbjct: 34 GGLTSVAVRGKDCAVIVTQKKVPDKL-LDSSTVTHLFKITENIGCVMTGMTADSRSQVQR 92
Query: 73 IFTITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYS 132
Y +E M +A + + P I+ G+D E VY
Sbjct: 93 ARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYK 152
Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINA 192
DP G+ A G + L+ +V + + I L+ +
Sbjct: 153 CDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVET-AITCLSTVLSIDFKP 211
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 62.4 bits (151), Expect = 3e-12
Identities = 27/236 (11%), Positives = 63/236 (26%), Gaps = 52/236 (22%)
Query: 22 DNGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPT---YNFLMIFTITI 78
G TV + +A++ + R + + Y ++ K +H + ++
Sbjct: 29 KQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDARVLSNYLR 88
Query: 79 LPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVYSYD 134
N+ ++ ++ PY +I G D G + +
Sbjct: 89 QQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSG-AHLLEFQ 147
Query: 135 PIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALS 194
P G+ A G+ + L+ +
Sbjct: 148 PSGNVTELYGTAIGARSQGAKTYLERTL-------------------------------- 175
Query: 195 SKLTILLGFRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDG 250
+ K ++ I +A + + + T D + + + KD
Sbjct: 176 ------------DTFIKIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDT 219
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 61.6 bits (149), Expect = 6e-12
Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 17/155 (10%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYRPT---YNFLMIFTI 76
G T + +A + ++ + R ++ + + K+ H + + +
Sbjct: 25 LGSTAIGIATKEGVVLGVEKRATSPL-LESDSIEKIVEIDRHIGCAMSGLTADARSMIEH 83
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMY----------GKRFFPYYTSTIIAGLDPEG 126
+ +++ ++ SL + + + P+ + +IAG D +
Sbjct: 84 ARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADD 143
Query: 127 KGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161
++ +P G R N +A GS QA L N+
Sbjct: 144 GYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNE 178
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 59.4 bits (143), Expect = 2e-11
Identities = 19/219 (8%), Positives = 44/219 (20%), Gaps = 48/219 (21%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQ 82
+ T AV + ++ D +++ G + + ++ +
Sbjct: 4 HATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLF 63
Query: 83 MYLHEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERA 142
+ + + + + + + + + S
Sbjct: 64 EKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIEPDD 123
Query: 143 NFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLG 202
A GS G A
Sbjct: 124 GILAIGSGGNYALAAGRALK---------------------------------------- 143
Query: 203 FRNQENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241
K A + + A A E +YT D +
Sbjct: 144 --------KHAGESMSASEIARAALETAGEICVYTNDQI 174
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 60.0 bits (145), Expect = 2e-11
Identities = 24/154 (15%), Positives = 58/154 (37%), Gaps = 17/154 (11%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYY------RPTYNFLMIFTI 76
G T + + + +A + R+++ + K+ + + + +
Sbjct: 26 LGSTAIGIQTSEGVCLAVEKRITSPL-MEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDK 84
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMY---------GKRFFPYYTSTIIAGLDPEGK 127
+ Q + +N+ M+ S+ + +S + G P+ + + G+D +G
Sbjct: 85 ARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKG- 143
Query: 128 GCVYSYDPIGHTERANFRAGGSSGALLQALLDNQ 161
++ DP G + + RA GS+ Q+ L
Sbjct: 144 PQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEL 177
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 59.7 bits (144), Expect = 2e-11
Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 12/149 (8%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYR------PTYNFLMIFTI 76
G T + + + ++ SD ++ + I K+ Y + ++
Sbjct: 21 KGSTALGMKFANGVLLISDKKVRSRL-IEQNSIEKIQLIDDYVAAVTSGLVADARVLVDF 79
Query: 77 TILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCVYS 132
+ Q + +++ +L K ++ M + PY S I AG+D G +
Sbjct: 80 ARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRL-FD 138
Query: 133 YDPIGHTERANFRAGGSSGALLQALLDNQ 161
DP G A GS + + L+ +
Sbjct: 139 CDPAGTINEYKATAIGSGKDAVVSFLERE 167
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 59.3 bits (143), Expect = 3e-11
Identities = 21/150 (14%), Positives = 55/150 (36%), Gaps = 17/150 (11%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYY---RPTYNFLMIFTITIL 79
G + V + D + ++ +A + + +L+D + F + I+
Sbjct: 18 RGRSVVVLTFRDGVLFVAENPSTALHKVS-----ELYDRLGFAAVGKYNEFENLRRAGIV 72
Query: 80 PFQMYLHEHNKV-MSTTSLAKMISIMM---YGKRFFPYYTSTIIAGLDP---EGKGCVYS 132
M + +++ ++ SLA + + + ++ PY +A + +Y
Sbjct: 73 HADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYR 132
Query: 133 YDPIGHT--ERANFRAGGSSGALLQALLDN 160
G E+ GG++ + A+ ++
Sbjct: 133 ITYDGSIVDEQHFVVMGGTTEPIATAMRES 162
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 57.5 bits (138), Expect = 7e-11
Identities = 22/216 (10%), Positives = 51/216 (23%), Gaps = 50/216 (23%)
Query: 26 TTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLFDHYYYRPTYNFLMIFTITILPFQMYL 85
T V+V ++ D ++S G + K+ Y + F F+++
Sbjct: 2 TIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFE 61
Query: 86 HEHNKVMSTTSLAKMISIMMYGKRFFPYYTSTIIAGLDPEGKGCVYSYDPIGHTERANFR 145
+ + + + ++ D + + + E
Sbjct: 62 RKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDQIL 121
Query: 146 AGGSSGALLQALLDNQVGIIQHSSKQMKSVLGGIRTHDLALTREINALSSKLTILLGFRN 205
A GS G +
Sbjct: 122 AIGSGGNYALSAAR--------------------------------------------AL 137
Query: 206 QENVDKTPVPLEKAISVVKDAFTAAAERDIYTGDGV 241
EN + + A +V+ + A + ++T
Sbjct: 138 VENTELS------AHEIVEKSLRIAGDICVFTNTNF 167
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 51.6 bits (123), Expect = 2e-08
Identities = 24/151 (15%), Positives = 49/151 (32%), Gaps = 17/151 (11%)
Query: 23 NGGTTVAVAGPDYAIIASDTRLSAGYNIYTREQSKLF---DHYYYR-----PTYNFLMIF 74
G T + + + I+ +D R+ + K++ +H L+
Sbjct: 30 RGATAIGIKCKEGVILIADKRVGSKLLEK-DTIEKIYKIDEHICAATSGLVADARVLIDR 88
Query: 75 TITILPFQMYLHEHNKVMSTTSLAKMISIMMYGKRFF----PYYTSTIIAGLDPEGKGCV 130
Q+ ++ ++ LAK I + P+ S +IAG++ +
Sbjct: 89 ARIEA--QINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVNE--VPKL 144
Query: 131 YSYDPIGHTERANFRAGGSSGALLQALLDNQ 161
Y DP G A G + + +
Sbjct: 145 YETDPSGALLEYKATAIGMGRMAVTEFFEKE 175
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
s100a3 [TaxId: 9606]}
Length = 93
Score = 29.4 bits (66), Expect = 0.11
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 6/39 (15%)
Query: 215 PLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
PLE+A++ + F A R GD + + +KE
Sbjct: 3 PLEQAVAAIVCTFQEYAGRC---GDK---YKLCQAELKE 35
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
s100a6 [TaxId: 9606]}
Length = 89
Score = 29.1 bits (65), Expect = 0.13
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 215 PLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
PL++AI ++ F + R+ GD ++K +KE
Sbjct: 3 PLDQAIGLLVAIFHKYSGRE---GDK---HTLSKKELKE 35
>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens),
s100a4 [TaxId: 9606]}
Length = 93
Score = 28.7 bits (64), Expect = 0.20
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 215 PLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
PLEKA+ V+ F + ++ GD + K +KE
Sbjct: 3 PLEKALDVMVSTFHKYSGKE---GDK---FKLNKSELKE 35
>d2oqoa1 d.2.1.10 (A:57-243) Penicillin-binding protein 1a, PBP1a
{Aquifex aeolicus [TaxId: 63363]}
Length = 187
Score = 26.1 bits (57), Expect = 3.9
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 210 DKTPVPLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYN 255
+ V ++K V +AF A +R+ + G+ AI + I Y
Sbjct: 6 KRFYVSIDKIPEHVINAFVATEDRNFWHHFGIDPVAIVRAAIVNYR 51
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 25.2 bits (55), Expect = 5.1
Identities = 3/44 (6%), Positives = 11/44 (25%)
Query: 215 PLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKEYNFPL 258
+ A+ +K +++ L + +
Sbjct: 22 EIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEF 65
>d1cxla1 b.1.18.2 (A:497-583) Cyclomaltodextrin
glycanotransferase, domain D {Bacillus circulans,
different strains [TaxId: 1397]}
Length = 87
Score = 23.8 bits (51), Expect = 9.1
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 11 TPIQHHFSPYSDNGGTTVAVAG 32
TP H P G T+ + G
Sbjct: 2 TPTIGHVGPMMAKPGVTITIDG 23
>d1e8aa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
calgranulin C, s100a12 [TaxId: 9606]}
Length = 87
Score = 24.0 bits (52), Expect = 9.2
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 215 PLEKAISVVKDAFTAAAERDIYTGDGVHLCAITKDGIKE 253
LE+ + + + F + R G ++K +K+
Sbjct: 2 KLEEHLEGIVNIFHQYSVRK---GHF---DTLSKGELKQ 34
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 367
Score = 25.3 bits (55), Expect = 9.3
Identities = 20/126 (15%), Positives = 37/126 (29%), Gaps = 7/126 (5%)
Query: 60 DHYYYRPTYNFLMIFTITILPFQMYLHEHNKVMSTTSLAK--MISIMMYGKRFFPYYTST 117
H YY N + L ++ + K +I + + +Y S
Sbjct: 226 LHQYYGNRDNDTANYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVWYHSN 285
Query: 118 IIAGLDPEGKGCVYSYDPIGHTERANFRAGGSSGALLQALLDNQVGIIQHSSKQMKSVLG 177
L + P + NF G +L L+ + + Q+ +V+
Sbjct: 286 EADKLIEPW-----TVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQLVNVIA 340
Query: 178 GIRTHD 183
I T
Sbjct: 341 PIMTEK 346
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 953,331
Number of extensions: 42361
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 73
Length of query: 261
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 177
Effective length of database: 1,254,276
Effective search space: 222006852
Effective search space used: 222006852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)