BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10327
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 220 bits (561), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 101/129 (78%), Positives = 111/129 (86%)
Query: 159 AASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSS 218
+ I K + NPQVYMDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSS
Sbjct: 1 GSPIAKKARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSS 60
Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
FHRIIP FMCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQF
Sbjct: 61 FHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQF 120
Query: 279 FLCTTKTEW 287
FL KT+W
Sbjct: 121 FLTCDKTDW 129
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 46/54 (85%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
MDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F+
Sbjct: 16 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 69
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 217 bits (552), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 99/121 (81%), Positives = 108/121 (89%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
+ NPQVYMDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F
Sbjct: 1 RSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQF 60
Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
MCQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL KT+
Sbjct: 61 MCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTD 120
Query: 287 W 287
W
Sbjct: 121 W 121
Score = 90.9 bits (224), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 40/54 (74%), Positives = 46/54 (85%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
MDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F+
Sbjct: 8 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFM 61
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 98/126 (77%), Positives = 106/126 (84%)
Query: 162 IDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHR 221
I K + NPQVY DIKIG + GRI LR D+VP TAENFRCLCTHEKGFG++GSSFHR
Sbjct: 5 IAKKARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHR 64
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
IIP F CQGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LS ANSGPNTNGSQFFL
Sbjct: 65 IIPQFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLT 124
Query: 282 TTKTEW 287
KT+W
Sbjct: 125 CDKTDW 130
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 43/52 (82%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
DIKIG + GRI LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F
Sbjct: 18 DIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIPQF 69
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 85/119 (71%), Positives = 103/119 (86%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP VY+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 63 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 121
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 44/54 (81%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 8 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 61
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 199 bits (506), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 85/119 (71%), Positives = 103/119 (86%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP VY+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 4 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 63
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 64 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 122
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 44/54 (81%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 9 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 62
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 85/119 (71%), Positives = 103/119 (86%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP VY+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 3 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 63 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 121
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 44/54 (81%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 8 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 61
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 85/119 (71%), Positives = 103/119 (86%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP VY+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 62 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 120
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 44/54 (81%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 7 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 60
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 90/124 (72%), Positives = 103/124 (83%)
Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRII 223
P+ NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRII
Sbjct: 6 PEFMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRII 65
Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
P FMCQGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT
Sbjct: 66 PGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTA 125
Query: 284 KTEW 287
KTEW
Sbjct: 126 KTEW 129
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 16 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 69
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 102/119 (85%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT+HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 62 QGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 7 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 62 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 7 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 198 bits (503), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 22 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 81
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 82 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 140
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 27 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 80
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 197 bits (501), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+L+MAN+GPNTNGSQFF+CT KTEW
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEW 121
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 197 bits (500), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FH+IIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FH+IIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM 61
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 196 bits (499), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 62 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 120
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 7 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 196 bits (499), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 63 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 121
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 196 bits (499), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 102/119 (85%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGG+FT+HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63 QGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 195 bits (496), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 7 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 66
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 67 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 125
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 12 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 65
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 192 bits (489), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 99/119 (83%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F C
Sbjct: 2 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFXC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFT HNGTGGKSIYG KFEDENFILKHTGPG+LS AN+GPNTNGSQFF+CT KTEW
Sbjct: 62 QGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEW 120
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F
Sbjct: 7 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGF 59
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 87/119 (73%), Positives = 101/119 (84%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP FMC
Sbjct: 3 NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMC 62
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGG+FT+ NGTGGKSIYG KFEDENFILKHTGPG+LSMAN+GPNTNGSQFF+CT KTEW
Sbjct: 63 QGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
Score = 70.5 bits (171), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI + + +GR++ +L D VP+TAENFR L T EKGFGY+GS FHRIIP F+
Sbjct: 8 FDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 86/124 (69%), Positives = 101/124 (81%), Gaps = 1/124 (0%)
Query: 165 KTKKN-PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRII 223
K K+N P+V+ DI+IG + GRI ++LR D+VPRTAENFR LCT E+GFGY FHR+I
Sbjct: 5 KQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVI 64
Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
P FMCQGGDF +GTGGKSIYG KF+DENF L+H G GVLSMANSGPNTNGSQFF+CTT
Sbjct: 65 PQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTT 124
Query: 284 KTEW 287
K +W
Sbjct: 125 KCDW 128
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI+IG + GRI ++LR D+VPRTAENFR LCT E+GFGY FHR+IP F+
Sbjct: 15 FDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIPQFM 68
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/124 (66%), Positives = 95/124 (76%), Gaps = 7/124 (5%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRII 223
+V+ DI IG + GRI ++L D+VP+TA NFR LCT E G G ++GS FHRII
Sbjct: 5 KVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRII 64
Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
P+FM QGGDFT NGTGG+SIYG KF DENF KHTGPGVLSMAN+GPNTNGSQFFLCT
Sbjct: 65 PNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTV 124
Query: 284 KTEW 287
KTEW
Sbjct: 125 KTEW 128
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 7/61 (11%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
DI IG + GRI ++L D+VP+TA NFR LCT E G G ++GS FHRIIP+F
Sbjct: 8 FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNF 67
Query: 54 V 54
+
Sbjct: 68 M 68
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 170 bits (431), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 89/117 (76%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
QVY D++ Q +GR+ +L D+VP+TAENFR LCT EKGFGY GS FHR+IPDFM QG
Sbjct: 3 QVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQG 62
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFT NGTGGKSIYG KF DENF H PG+LSMAN+GPNTNGSQFF+ T W
Sbjct: 63 GDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPW 119
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 41/54 (75%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++ Q +GR+ +L D+VP+TAENFR LCT EKGFGY GS FHR+IPDF+
Sbjct: 6 FDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFM 59
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 94/118 (79%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP V+ D+ + +GRIT++L ++VPRTAENFR LCT EKGFG++ S FHR+IPDF+C
Sbjct: 6 NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVC 65
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
QGGD T H+GTGG+SIYG+KFEDENF +KHTGPG+LSMAN G NTN SQF + K E
Sbjct: 66 QGGDITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVITLKKAE 123
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 42/54 (77%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D+ + +GRIT++L ++VPRTAENFR LCT EKGFG++ S FHR+IPDFV
Sbjct: 11 FDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFV 64
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/117 (66%), Positives = 87/117 (74%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
V+ DI +G I +L D+VP+TA NFR LCT EKGFGY GS FHR+IPDFM QG
Sbjct: 3 NVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQG 62
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFT NGTGGKSIYG KF DENF LKH PG+LSMAN+GPNTNGSQFF+ T T W
Sbjct: 63 GDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSW 119
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 37/54 (68%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI +G I +L D+VP+TA NFR LCT EKGFGY GS FHR+IPDF+
Sbjct: 6 FDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFM 59
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 161 bits (407), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 77/130 (59%), Positives = 92/130 (70%), Gaps = 8/130 (6%)
Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQ 215
P NP+V+ D+ IG + VGRI ++L D+VP+TAENFR LCT EKG G ++
Sbjct: 10 PSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFK 69
Query: 216 GSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNG 275
G FHRII FM QGGDF+N NGTGG+SIYG KFEDENF KH G+LSMAN+G NTNG
Sbjct: 70 GCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNG 129
Query: 276 SQFFLCTTKT 285
SQFF+ T T
Sbjct: 130 SQFFITTVPT 139
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 8/61 (13%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPDF 53
D+ IG + VGRI ++L D+VP+TAENFR LCT EKG G ++G FHRII F
Sbjct: 21 DVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKF 80
Query: 54 V 54
+
Sbjct: 81 M 81
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 161 bits (407), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 90/116 (77%)
Query: 172 VYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGG 231
VY D+ ++ +GRI ++L D+VP+TA+NFR LC KG GY+GS+FHRIIP FM QGG
Sbjct: 30 VYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGG 89
Query: 232 DFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
D+T HNGTGG+SIYG KF DENF LKHT G+LSMAN G +TNGSQFF+ KT+W
Sbjct: 90 DYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQW 145
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D+ ++ +GRI ++L D+VP+TA+NFR LC KG GY+GS+FHRIIP F+
Sbjct: 33 DVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFM 85
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 160 bits (406), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 93/134 (69%), Gaps = 10/134 (7%)
Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQG 216
P + NP+V+ DI I + GRI ++L D VP+TAENFR LCT EKG G Y+
Sbjct: 2 PGSMTNPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKS 61
Query: 217 SSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILK---HTGPGVLSMANSGPNT 273
S FHR+IP+FM QGGDFT NGTGG+SIYG F DE+F K HTG G LSMAN+GPNT
Sbjct: 62 SVFHRVIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNT 121
Query: 274 NGSQFFLCTTKTEW 287
NGSQFF+CT T W
Sbjct: 122 NGSQFFICTAATPW 135
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
DI I + GRI ++L D VP+TAENFR LCT EKG G Y+ S FHR+IP+F
Sbjct: 12 FDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVIPNF 71
Query: 54 V 54
+
Sbjct: 72 M 72
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 95/130 (73%), Gaps = 3/130 (2%)
Query: 161 SIDPKTKK---NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGS 217
++D K K+ +VY D++IG +++GR+ I L VP+T +NF L T EKGFGY+ S
Sbjct: 1 AMDEKKKRPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDS 60
Query: 218 SFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQ 277
FHR+I DFM QGGDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQ
Sbjct: 61 KFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQ 120
Query: 278 FFLCTTKTEW 287
FF+ T KT W
Sbjct: 121 FFITTVKTAW 130
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG +++GR+ I L VP+T +NF L T EKGFGY+ S FHR+I DF+
Sbjct: 17 FDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFM 70
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 4/125 (3%)
Query: 167 KKNPQV----YMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRI 222
KK P+V Y D++IG +++GR+ I L VP+T +NF L T EKGFGY+ S FHR+
Sbjct: 6 KKGPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRV 65
Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 282
I DFM QGGDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T
Sbjct: 66 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 125
Query: 283 TKTEW 287
KT W
Sbjct: 126 VKTAW 130
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG +++GR+ I L VP+T +NF L T EKGFGY+ S FHR+I DF+
Sbjct: 17 FDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFM 70
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 89/126 (70%), Gaps = 7/126 (5%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHR 221
NP VY DI IG+ GRIT++L D VP TAENFR LCT EKG G Y GS FHR
Sbjct: 19 NPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHR 78
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
IIP FM QGGDFT +GTGG+SIYG+KF DENF+ H P +LSMAN+GPNTNGSQFF+
Sbjct: 79 IIPQFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFIT 138
Query: 282 TTKTEW 287
T W
Sbjct: 139 TVPCPW 144
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-------YQGSSFHRIIPDF 53
DI IG+ GRIT++L D VP TAENFR LCT EKG G Y GS FHRIIP F
Sbjct: 24 FDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQF 83
Query: 54 V 54
+
Sbjct: 84 M 84
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 91/125 (72%), Gaps = 4/125 (3%)
Query: 167 KKNPQV----YMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRI 222
KK P+V Y D++IG ++VGR+ L VP+T +NF L T EKGFGY+ S FHR+
Sbjct: 9 KKGPKVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRV 68
Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 282
I DFM QGGDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T
Sbjct: 69 IKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITT 128
Query: 283 TKTEW 287
KT W
Sbjct: 129 VKTAW 133
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG ++VGR+ L VP+T +NF L T EKGFGY+ S FHR+I DF+
Sbjct: 20 FDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 73
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 88/117 (75%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
+VY D++IG ++VGR+ L VP+T +NF L T EKGFGY+ S FHR+I DFM QG
Sbjct: 7 KVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQG 66
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFT +GTGGKSIYG +F DENF LKH GPG +SMAN+G +TNGSQFF+ T KT W
Sbjct: 67 GDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAW 123
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG ++VGR+ L VP+T +NF L T EKGFGY+ S FHR+I DF+
Sbjct: 10 FDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFM 63
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 87/117 (74%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
V+ +I I + GRI +L + VP+TA+NFR L T + GFGY+ S FHR+IP FM QG
Sbjct: 4 NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQG 63
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T T W
Sbjct: 64 GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSW 120
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+I I + GRI +L + VP+TA+NFR L T + GFGY+ S FHR+IP F+
Sbjct: 7 FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFM 60
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 87/117 (74%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
V+ +I I + GRI +L + VP+TA+NFR L T + GFGY+ S FHR+IP FM QG
Sbjct: 5 NVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQG 64
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFT HNGTGGKSIYG KF DENF +KHT PG+LSMAN+G NTNGSQFF+ T T W
Sbjct: 65 GDFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSW 121
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+I I + GRI +L + VP+TA+NFR L T + GFGY+ S FHR+IP F+
Sbjct: 8 FNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFM 61
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 89/117 (76%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
+V+ D++IG ++VGRI I L ++VP+T ENF L T EKG+GY+GS FHR+I DFM QG
Sbjct: 9 KVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQG 68
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFT +GTGG SIYG F DENF LKH G G +SMAN+GP+TNGSQFF+ TK W
Sbjct: 69 GDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 125
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG ++VGRI I L ++VP+T ENF L T EKG+GY+GS FHR+I DF+
Sbjct: 12 FDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFM 65
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 153 bits (387), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 73/124 (58%), Positives = 90/124 (72%), Gaps = 5/124 (4%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRII 223
NP V+ D+ IG QEVGR+ I+L D+VP+TAENFR CT E GY+GS+FHR+I
Sbjct: 10 NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVI 69
Query: 224 PDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTT 283
DFM QGGDF N +GTG SIY F DENF L+H+ PG+LSMANSGP+TNG QFF+ +
Sbjct: 70 KDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCS 129
Query: 284 KTEW 287
K +W
Sbjct: 130 KCDW 133
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDFV 54
D+ IG QEVGR+ I+L D+VP+TAENFR CT E GY+GS+FHR+I DF+
Sbjct: 16 DVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFM 73
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/117 (60%), Positives = 87/117 (74%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
+V+ D++IG ++VGRI I L +VP+T ENF L T EKG+GY+GS FHR+I DFM QG
Sbjct: 17 KVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFMIQG 76
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GD T +GTGG SIYG F DENF LKH G G +SMAN+GP+TNGSQFF+ TK W
Sbjct: 77 GDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 133
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG ++VGRI I L +VP+T ENF L T EKG+GY+GS FHR+I DF+
Sbjct: 20 FDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFM 73
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 149 bits (377), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 85/121 (70%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
K +VY D++IG + +GRI I L VP+TA NF L KG GY GS FHR+I DF
Sbjct: 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63
Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
M QGGDFT +GTGG+SIYG KF DENF LKH G G LSMAN+G +TNGSQFF+ T KT
Sbjct: 64 MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTP 123
Query: 287 W 287
W
Sbjct: 124 W 124
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 34/54 (62%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D++IG + +GRI I L VP+TA NF L KG GY GS FHR+I DF+
Sbjct: 11 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFM 64
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 148 bits (374), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
+VY DI IG + VGR+ I L + VP+T ENF+ L + E GFGY+GS FHR+I +FM QG
Sbjct: 7 KVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFMIQG 66
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFTN +GTGGKSIYG +F+DEN +KH G +SMAN+GPN+NGSQFF+ T T W
Sbjct: 67 GDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPW 122
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
DI IG + VGR+ I L + VP+T ENF+ L + E GFGY+GS FHR+I +F+
Sbjct: 10 FDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFM 63
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 147 bits (371), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
+VY D+ I + +GRITI L P T ENFR LCT E GFGY+ S FHR+I +FM QG
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQG 72
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFTN +GTGGKSIYG KF DEN +KH G LSMAN+GPNTNGSQFF+ T T W
Sbjct: 73 GDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPW 128
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D+ I + +GRITI L P T ENFR LCT E GFGY+ S FHR+I +F+
Sbjct: 16 FDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFM 69
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 147 bits (370), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/117 (62%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 171 QVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQG 230
+VY D+ I + +GRITI L P T ENFR LCT E GFGY+ S FHR+I +FM QG
Sbjct: 13 KVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFMIQG 72
Query: 231 GDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GDFTN +GTGGKSIYG KF DEN +KH G LSMAN+GPNTNGSQFF+ T T W
Sbjct: 73 GDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAPTPW 128
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D+ I + +GRITI L P T ENFR LCT E GFGY+ S FHR+I +F+
Sbjct: 16 FDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQNFM 69
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 93/144 (64%), Gaps = 8/144 (5%)
Query: 149 ENQIDPAEKLAASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTH 208
EN I P +P NP V+MDI +G +G+ +L ++VP+T+ENFR CT
Sbjct: 42 ENTIIPYYLSNLLTNPS---NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTG 98
Query: 209 EKGF-----GYQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGV 263
E GY+ + FHR+I +FM QGGDF NHNG+G SIYG KF+DENF +KH G+
Sbjct: 99 EYKVNNLPVGYKNTIFHRVIKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGL 158
Query: 264 LSMANSGPNTNGSQFFLCTTKTEW 287
LSMANSGPNTNG QFF+ T K EW
Sbjct: 159 LSMANSGPNTNGCQFFITTKKCEW 182
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKG-----FGYQGSSFHRIIPDFV 54
MDI +G +G+ +L ++VP+T+ENFR CT E GY+ + FHR+I +F+
Sbjct: 64 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEFM 122
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/122 (59%), Positives = 87/122 (71%), Gaps = 5/122 (4%)
Query: 171 QVYMDIK---IGKQE--VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPD 225
QV+ D++ +G E VGRI L VP+TA+NFR LC G GY+ S+FHRIIP+
Sbjct: 4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPN 63
Query: 226 FMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
FM QGGDFT NGTGG+SIYG+KF DENF KH G+LSMAN+GPNTNGSQFF+ T T
Sbjct: 64 FMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAVT 123
Query: 286 EW 287
W
Sbjct: 124 SW 125
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 3 IKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+ + +VGRI L VP+TA+NFR LC G GY+ S+FHRIIP+F+
Sbjct: 14 VGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNFM 65
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK------GFGYQGSSFHR 221
K +V+ DI I GRI +L D+ PRT ENFR LCT EK Y+ S FHR
Sbjct: 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
IIP FMCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+GPNTN SQFF+
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121
Query: 282 TTKTEW 287
W
Sbjct: 122 LVPCPW 127
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE------KGFGYQGSSFHRIIPDFV 54
DI I GRI +L D+ PRT ENFR LCT E K Y+ S FHRIIP F+
Sbjct: 8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFM 67
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 81/126 (64%), Gaps = 6/126 (4%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEK------GFGYQGSSFHR 221
K +V+ DI I GRI +L D+ PRT ENFR LCT EK Y+ S FHR
Sbjct: 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
IIP FMCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+GPNTN SQF +
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLIT 121
Query: 282 TTKTEW 287
W
Sbjct: 122 LVPCPW 127
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE------KGFGYQGSSFHRIIPDFV 54
DI I GRI +L D+ PRT ENFR LCT E K Y+ S FHRIIP F+
Sbjct: 8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQFM 67
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 88/124 (70%), Gaps = 8/124 (6%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSS 218
+ +PQ + DI+I ++ VGRI QL D+ P+T +NF CLC+ EKG G Y+GS+
Sbjct: 17 RGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGST 76
Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
FHR++ +FM QGGDF+ NG GG+SIYG F+DENFILKH +LSMAN G +TNGSQF
Sbjct: 77 FHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQF 136
Query: 279 FLCT 282
F+ T
Sbjct: 137 FITT 140
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
DI+I ++ VGRI QL D+ P+T +NF CLC+ EKG G Y+GS+FHR++ +
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 53 FV 54
F+
Sbjct: 84 FM 85
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/125 (52%), Positives = 84/125 (67%), Gaps = 8/125 (6%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSS 218
K +V++D+ I GRI ++L D+ PRT NF LCT G G Y+GS+
Sbjct: 4 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 63
Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
FHR+I +FM QGGDFT +GTGG+SIYG F+DE F++KH P V+SMAN GPNTNGSQF
Sbjct: 64 FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 123
Query: 279 FLCTT 283
F+ TT
Sbjct: 124 FITTT 128
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
+D+ I GRI ++L D+ PRT NF LCT G G Y+GS+FHR+I +
Sbjct: 11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 70
Query: 53 FV 54
F+
Sbjct: 71 FM 72
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 134 bits (337), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 8/126 (6%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSF 219
+ P+ + DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ F
Sbjct: 25 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 84
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF 279
HR++ DFM QGGDF+ NG GG+SIYG FEDE+F +KH +LSMAN G +TNGSQFF
Sbjct: 85 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFF 144
Query: 280 LCTTKT 285
+ T T
Sbjct: 145 ITTKPT 150
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ FHR++ D
Sbjct: 31 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKD 90
Query: 53 FV 54
F+
Sbjct: 91 FM 92
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 8/126 (6%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSF 219
+ P+ + DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ F
Sbjct: 8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLF 67
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF 279
HR++ DFM QGGDF+ NG GG+SIYG FEDE+F +KH +LSMAN G +TNGSQFF
Sbjct: 68 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 280 LCTTKT 285
+ T T
Sbjct: 128 ITTKPT 133
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ FHR++ D
Sbjct: 14 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRVVKD 73
Query: 53 FV 54
F+
Sbjct: 74 FM 75
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 8/126 (6%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSF 219
+ P+ + DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ F
Sbjct: 8 QRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLF 67
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFF 279
HR++ DFM QGGDF+ NG GG+SIYG FEDE+F +KH +LSMAN G +TNGSQFF
Sbjct: 68 HRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFF 127
Query: 280 LCTTKT 285
+ T T
Sbjct: 128 ITTKPT 133
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
DI I Q GR+ +L D+ P+T ENFRCLCT EKG G Y+ FHR++ D
Sbjct: 14 FDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKD 73
Query: 53 FV 54
F+
Sbjct: 74 FM 75
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 10/129 (7%)
Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
A+I P + + P VY++ +G I ++L + P+T +NF L +G+ Y G+ F
Sbjct: 2 AAIPPDSWQPPNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRGY-YNGTKF 53
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
HRII DFM QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54 HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
Query: 279 FLCTTKTEW 287
F+ T+W
Sbjct: 113 FVTLAPTQW 121
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G I ++L + P+T +NF L +G+ Y G+ FHRII DF+
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFM 61
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 10/129 (7%)
Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
A+I P + + P VY++ +G I ++L + P+T +NF L +G+ Y G+ F
Sbjct: 2 AAIPPDSWQPPNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRGY-YNGTKF 53
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
HRII DFM QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54 HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
Query: 279 FLCTTKTEW 287
F+ T+W
Sbjct: 113 FVTLAPTQW 121
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G I ++L + P+T +NF L +G+ Y G+ FHRII DF+
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFM 61
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/129 (47%), Positives = 83/129 (64%), Gaps = 10/129 (7%)
Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
A+I P + + P VY++ +G I ++L + P+T +NF L +G+ Y G+ F
Sbjct: 2 AAIPPDSWQPPNVYLETSMGI-----IVLELYWKHAPKTCKNFAELA--RRGY-YNGTKF 53
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
HRII DFM QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54 HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
Query: 279 FLCTTKTEW 287
F+ T+W
Sbjct: 113 FVTLAPTQW 121
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G I ++L + P+T +NF L +G+ Y G+ FHRII DF+
Sbjct: 19 SMGIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFM 61
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 68/99 (68%), Gaps = 5/99 (5%)
Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
+G ++L + P+T NF LC E GF Y + FHR+IP+F+ QGGD T G GGK
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTG-TGKGGK 102
Query: 243 SIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 280
SIYG FEDE N LKHTG G+LSM+N+GPNTN SQFF+
Sbjct: 103 SIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFI 141
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+G ++L + P+T NF LC E GF Y + FHR+IP+FV
Sbjct: 47 LGDFEVELYWYHSPKTCLNFYTLC--EMGF-YDNTIFHRVIPNFV 88
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 69/121 (57%), Gaps = 5/121 (4%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFM 227
+ P+ D I +G I +L P+T ENF C H + Y G +FHRII FM
Sbjct: 15 EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFM 71
Query: 228 CQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
Q GD T G GG+SI+G +FEDE + L+H P LSMAN+G NTNGSQFF+ T
Sbjct: 72 IQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTP 130
Query: 287 W 287
W
Sbjct: 131 W 131
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
D I +G I +L P+T ENF C H + Y G +FHRII F+
Sbjct: 22 DSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFM 71
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 182 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGG 241
+VG I I++ + P+T ENF LC Y G FHR I FM Q GD T G GG
Sbjct: 14 DVGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGG 69
Query: 242 KSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF+ K
Sbjct: 70 NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 113
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+VG I I++ + P+T ENF LC Y G FHR I F+
Sbjct: 14 DVGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFM 56
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 64/104 (61%), Gaps = 5/104 (4%)
Query: 182 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGG 241
+VG I I++ + P+T ENF LC Y G FHR I FM Q GD T G GG
Sbjct: 8 DVGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTG-TGRGG 63
Query: 242 KSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF+ K
Sbjct: 64 NSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGK 107
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 9 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+VG I I++ + P+T ENF LC Y G FHR I F+
Sbjct: 8 DVGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFM 50
>pdb|2CQB|A Chain A, Solution Structure Of The Rna Recognition Motif In
Peptidyl- Prolyl Cis-Trans Isomerase E
Length = 102
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/85 (52%), Positives = 55/85 (64%), Gaps = 24/85 (28%)
Query: 66 RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
R +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH
Sbjct: 13 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 72
Query: 107 -----QLFGRIIRVNLAKPQKVQQT 126
+LFGR IRVNLAKP +++++
Sbjct: 73 NMNESELFGRTIRVNLAKPMRIKES 97
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 64/106 (60%), Gaps = 5/106 (4%)
Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
+G I I L Y +T +NF H Y FHR+I FM Q GD + +GTGG+
Sbjct: 14 MGDIHISLFYKECKKTVQNFS---VHSINGYYNNCIFHRVIKHFMVQTGD-PSGDGTGGE 69
Query: 243 SIYGNKFEDENFI-LKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
SI+GN+FEDE F L H+ P ++SMAN GPNTNGSQFF+ T W
Sbjct: 70 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPW 115
>pdb|2KYX|A Chain A, Solution Structure Of The Rrm Domain Of Cyp33
Length = 83
Score = 84.3 bits (207), Expect = 6e-17, Method: Composition-based stats.
Identities = 45/82 (54%), Positives = 50/82 (60%), Gaps = 24/82 (29%)
Query: 62 SLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH--------------- 106
S R +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH
Sbjct: 2 STTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61
Query: 107 ---------QLFGRIIRVNLAK 119
+LFGR IRVNLAK
Sbjct: 62 AAIDNMNESELFGRTIRVNLAK 83
>pdb|3MDF|A Chain A, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
pdb|3MDF|B Chain B, Crystal Structure Of The Rrm Domain Of Cyclophilin 33
Length = 85
Score = 84.0 bits (206), Expect = 9e-17, Method: Composition-based stats.
Identities = 44/78 (56%), Positives = 49/78 (62%), Gaps = 24/78 (30%)
Query: 66 RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
R +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH
Sbjct: 8 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 67
Query: 107 -----QLFGRIIRVNLAK 119
+LFGR IRVNLAK
Sbjct: 68 NMNESELFGRTIRVNLAK 85
>pdb|3LPY|A Chain A, Crystal Structure Of The Rrm Domain Of Cyp33
pdb|3LPY|B Chain B, Crystal Structure Of The Rrm Domain Of Cyp33
Length = 79
Score = 82.0 bits (201), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/77 (55%), Positives = 48/77 (62%), Gaps = 24/77 (31%)
Query: 66 RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
R +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH
Sbjct: 3 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 62
Query: 107 -----QLFGRIIRVNLA 118
+LFGR IRVNLA
Sbjct: 63 NMNESELFGRTIRVNLA 79
>pdb|2KU7|A Chain A, Solution Structure Of Mll1 Phd3-Cyp33 Rrm Chimeric Protein
Length = 140
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 48/77 (62%), Gaps = 24/77 (31%)
Query: 66 RFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------- 106
R +GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETEKH
Sbjct: 64 RVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAID 123
Query: 107 -----QLFGRIIRVNLA 118
+LFGR IRVNLA
Sbjct: 124 NMNESELFGRTIRVNLA 140
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 5/108 (4%)
Query: 180 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGT 239
K G I I+L P+ NF LC Y + FHR++P F+ QGGD T G+
Sbjct: 30 KTTAGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFIVQGGDPTG-TGS 85
Query: 240 GGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
GG+SIYG F+DE + L+ G+++MAN+G + NGSQFF + +
Sbjct: 86 GGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRAD 133
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 7 KQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
K G I I+L P+ NF LC Y + FHR++P F+
Sbjct: 30 KTTAGDIDIELWSKEAPKACRNFIQLCLEAY---YDNTIFHRVVPGFI 74
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/98 (52%), Positives = 64/98 (65%), Gaps = 5/98 (5%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
G + ++L DL P+T ENF LC K Y G+ FHR I +F+ QGGD GTGG+S
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGD-PTGTGTGGES 84
Query: 244 IYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFL 280
+G F+DE L HTG G+LSMANSGPN+N SQFF+
Sbjct: 85 YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFI 122
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G + ++L DL P+T ENF LC K Y G+ FHR I +FV
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFV 69
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 60/102 (58%), Gaps = 9/102 (8%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
G + +L P+ +NF L G+ Y+ + FH+ I F+ QGGD T G GG+S
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTG-TGKGGES 81
Query: 244 IYGNKFEDENFI-LKHTGPGVLSMANSG----PNTNGSQFFL 280
IYG F+DE + LK+ G+LSMA+ G PNTNGSQFF+
Sbjct: 82 IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFI 123
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDFMCQGG 231
G I I L + P+T NF L K + Y G+ FHR+I FM QGG
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 232 DFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
D T G + ++F E L+ P +L+MAN+GP TNGSQFF+ KT
Sbjct: 93 DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKT 143
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 15/115 (13%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
G + I+L D+ PR ++F LC + + + FHR I +FM QGG + K
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 244 IY-----------GNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
+ G FEDE + L H G GVLSMAN G ++N S+FF+ E
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFITFKSCE 127
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G + I+L D+ PR ++F LC + + + FHR I +F+
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFM 56
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 164 PKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLC------THEKGFG---- 213
P + KNP+VYMDI + + +GR+ I+L D P ENF L + G G
Sbjct: 9 PNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKY 68
Query: 214 -------YQGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNK-----FEDENFILKHTGP 261
Y+G FH ++ + GD N NG+ ++Y ++ F D + H
Sbjct: 69 NRHINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD--YFYPHESK 126
Query: 262 GVLSMA 267
G+LS+
Sbjct: 127 GLLSLV 132
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 17/67 (25%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLC------THEKGFG-----------YQG 43
MDI + + +GR+ I+L D P ENF L + G G Y+G
Sbjct: 19 MDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEG 78
Query: 44 SSFHRII 50
FH ++
Sbjct: 79 CKFHNVL 85
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
G I I+ D P T +NF C +GF Y + FHR+I FM QGG F G K+
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKA 63
Query: 244 IYGNKFEDENFILKHTGPGVLSMANS-GPNTNGSQFFLCTTKTEW 287
+ N LK+T G L+MA + P++ +QFF+ ++
Sbjct: 64 TKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDF 107
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
G I I+ D P T +NF C +GF Y + FHR+I FM QGG F G K+
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGF--EPGMKQKA 63
Query: 244 IYGNKFEDENFILKHTGPGVLSMANS-GPNTNGSQFFLCTTKTEW 287
+ N LK+T G L+MA + P++ +QFF+ ++
Sbjct: 64 TKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQFFINVVDNDF 107
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 19/120 (15%)
Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
+G + ++L P NF LC +G+ Y + FHR++ DF+ QGGD T G
Sbjct: 30 LGDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGAD 86
Query: 243 SIY-GNKFEDENFI-LKHTGPGVLSMANSGPN--------------TNGSQFFLCTTKTE 286
+ + G F+ E LK G++ +AN G + TNG+QFF+ + +
Sbjct: 87 TTFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARAD 146
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDF 233
G IT++L D P TA NF K Y G+ FHR+I FM QGG F
Sbjct: 9 GTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQGGGF 55
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G IT++L D P TA NF K Y G+ FHR+I F+
Sbjct: 9 GTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFM 49
>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli
Periplasmic Cyclophilin
Length = 166
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 182 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFT 234
G I ++L P + +NF GF Y ++FHR+IP FM QGG FT
Sbjct: 12 SAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT 61
>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant
pdb|1V9T|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1V9T|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
Succinyl-Ala- Pro-Ala-P-Nitroanilide
pdb|1VAI|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
pdb|1VAI|B Chain B, Structure Of E. Coli Cyclophilin B K163t Mutant Bound To
N- Acetyl-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin
Length = 166
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 182 EVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFT 234
G I ++L P + +NF GF Y ++FHR+IP FM QGG FT
Sbjct: 12 SAGNIELELDKQKAPVSVQNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFT 61
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
G I ++L P+T ENF L +KG Y G+ FHR+I FM QGG F G K
Sbjct: 13 GVIKLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQGGGF--EPGLKQKP 67
Query: 244 IYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
+ N LK+ + + P++ +QFF+ E+
Sbjct: 68 TDAPIANEANNGLKNDTYTIAMARTNDPHSATAQFFINVNDNEF 111
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G I ++L P+T ENF L +KG Y G+ FHR+I F+
Sbjct: 13 GVIKLELDEAKAPKTVENF--LNYVKKGH-YDGTIFHRVINGFM 53
>pdb|1X5U|A Chain A, Solution Structure Of Rrm Domain In Splicing Factor 3b
Length = 105
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRI 112
+GGL E+V + +L F+ G +V+ MP D T +HQ +G +
Sbjct: 20 VGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFV 62
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVN 116
+G L+ E+ + + AAF PFG + D ++ D T K + +G + N
Sbjct: 20 VGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFN 66
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKV 123
+GGL+ + K L F FG++VD + D T + + FG I+ + A +KV
Sbjct: 16 VGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKV 69
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVN 116
+G L+ E+ + + +AF PFG + D ++ D T K + +G + N
Sbjct: 20 VGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 66
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug Triplet
Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 73 LAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQT 126
L +E D+ L F+PFG++V ++ +D +T + FG + N Q Q+
Sbjct: 33 LPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 86
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 73 LAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRI 112
L +E D L + F+PFG+++ ++ +D +T + FG +
Sbjct: 48 LPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFV 87
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLF 109
+G + E+ + + AF PFG + I M D T KH+ F
Sbjct: 33 VGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGF 72
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFG 110
+G + E+ + + AF PFG + I M D T KH+ F
Sbjct: 18 VGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFA 58
>pdb|1X4D|A Chain A, Solution Structure Of Rrm Domain In Matrin 3
Length = 102
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 82 LNAAFIPFGDLVDIQMPLDYETEKHQL-FGRIIRVNLAKPQKVQQTSSKP 130
+N AFI D Q +DY T L FG+ +RV+L+ QK ++ S P
Sbjct: 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS--QKYKRIKSGP 99
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRI 112
+G L + + +L F PFG + IQ+ +D ET + + +G I
Sbjct: 31 VGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFI 73
>pdb|4DZB|B Chain B, Mucosal-Associated Invariant T Cell Receptor,
Valpha7.2jalpha33-Vbeta2
Length = 246
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 240 GGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
G K+ Y E + F++ H + ++ + + S F++C+ +T
Sbjct: 53 GSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYICSART 98
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRII 113
+GGL+ + K L F FG++VD + LD T + + FG ++
Sbjct: 4 IGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVL 47
>pdb|1IQT|A Chain A, Solution Structure Of The C-Terminal Rna-Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
Length = 75
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLF 109
+GGL+ + ++ + F FG++ I++P+D +T K + F
Sbjct: 4 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 43
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 109 FGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETL-DPENQID------PAEKLAAS 161
FGRI++++ K +++++ + + A+ G+TL DP+ I P ++ +
Sbjct: 360 FGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIA 419
Query: 162 IDPKTKKNPQVYMDIKIGK 180
++PKTK + Q M + +G+
Sbjct: 420 VEPKTKAD-QEKMGLALGR 437
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain Of
Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 28.5 bits (62), Expect = 4.7, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLF 109
+GGL+ + ++ + F FG++ I++P+D +T K + F
Sbjct: 6 VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGF 45
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 109 FGRIIRVNLAKPQKVQQTSSKPVWASDTWLQKHAGETL-DPENQID------PAEKLAAS 161
FGRI++++ K +++++ + + A+ G+TL DP+ I P ++ +
Sbjct: 359 FGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIA 418
Query: 162 IDPKTKKNPQVYMDIKIGK 180
++PKTK + Q M + +G+
Sbjct: 419 VEPKTKAD-QEKMGLALGR 436
>pdb|1X4G|A Chain A, Solution Structure Of Rrm Domain In Nucleolysin Tiar
Length = 109
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQM 97
GG+A + D+++ F PFG +++I++
Sbjct: 31 GGIASGLTDQLMRQTFSPFGQIMEIRV 57
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFG 110
+G + E+ + + AF PFG + I D T KH+ F
Sbjct: 17 VGSIYYELGEDTIRQAFAPFGPIKSIDXSWDSVTXKHKGFA 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,634,445
Number of Sequences: 62578
Number of extensions: 430405
Number of successful extensions: 984
Number of sequences better than 100.0: 110
Number of HSP's better than 100.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 186
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)