RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10327
(289 letters)
>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6
{Malassezia sympodialis [TaxId: 76777]}
Length = 162
Score = 142 bits (358), Expect = 1e-42
Identities = 78/118 (66%), Positives = 87/118 (73%)
Query: 170 PQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQ 229
V+ DI +G I +L D+VP+TA NFR LCT EKGFGY GS FHR+IPDFM Q
Sbjct: 2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61
Query: 230 GGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
GGDFT NGTGGKSIYG KF DENF LKH PG+LSMAN+GPNTNGSQFF+ T T W
Sbjct: 62 GGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSW 119
Score = 62.8 bits (152), Expect = 8e-13
Identities = 31/53 (58%), Positives = 36/53 (67%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
DI +G I +L D+VP+TA NFR LCT EKGFGY GS FHR+IPDF
Sbjct: 6 FDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDF 58
>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia
malayi) [TaxId: 6279]}
Length = 174
Score = 135 bits (341), Expect = 4e-40
Identities = 66/129 (51%), Positives = 84/129 (65%), Gaps = 8/129 (6%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSS 218
K +V++D+ I GRI ++L D+ PRT NF LCT G G Y+GS+
Sbjct: 1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST 60
Query: 219 FHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQF 278
FHR+I +FM QGGDFT +GTGG+SIYG F+DE F++KH P V+SMAN GPNTNGSQF
Sbjct: 61 FHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQF 120
Query: 279 FLCTTKTEW 287
F+ TT
Sbjct: 121 FITTTPAPH 129
Score = 63.7 bits (154), Expect = 6e-13
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
+D+ I GRI ++L D+ PRT NF LCT G G Y+GS+FHR+I +
Sbjct: 8 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKN 67
Query: 53 FV 54
F+
Sbjct: 68 FM 69
>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans
isomerase, cyclophilin F {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 129 bits (324), Expect = 1e-37
Identities = 85/120 (70%), Positives = 103/120 (85%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NP VY+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP FMC
Sbjct: 2 NPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMC 61
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWN 288
Q GDFTNHNGTGGKSIYG++F DENF LKH GPGVLSMAN+GPNTNGSQFF+CT KT+W
Sbjct: 62 QAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWL 121
Score = 61.8 bits (149), Expect = 2e-12
Identities = 30/54 (55%), Positives = 44/54 (81%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
+D+ + +GR+ ++L+ D+VP+TAENFR LCT EKGFGY+GS+FHR+IP F+
Sbjct: 7 LDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFM 60
>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium
falciparum [TaxId: 5833]}
Length = 170
Score = 128 bits (321), Expect = 4e-37
Identities = 71/126 (56%), Positives = 82/126 (65%), Gaps = 6/126 (4%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE------KGFGYQGSSFHR 221
K +V+ DI I GRI +L D+ PRT ENFR LCT E K Y+ S FHR
Sbjct: 2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHR 61
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
IIP FMCQGGD TN NG+GG+SIYG F DENF +KH PG+LSMAN+GPNTN SQFF+
Sbjct: 62 IIPQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFIT 121
Query: 282 TTKTEW 287
W
Sbjct: 122 LVPCPW 127
Score = 47.9 bits (113), Expect = 2e-07
Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLC------THEKGFGYQGSSFHRIIPDF 53
DI I GRI +L D+ PRT ENFR LC + K Y+ S FHRIIP F
Sbjct: 8 FDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRIIPQF 66
>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 3 [TaxId: 6239]}
Length = 172
Score = 127 bits (319), Expect = 7e-37
Identities = 82/127 (64%), Positives = 94/127 (74%), Gaps = 7/127 (5%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------KGFGYQGSSFHR 221
+V+ DI IG + GRI ++L D+VP+TA NFR LCT E K ++GS FHR
Sbjct: 3 RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62
Query: 222 IIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLC 281
IIP+FM QGGDFT NGTGG+SIYG KF DENF KHTGPGVLSMAN+GPNTNGSQFFLC
Sbjct: 63 IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLC 122
Query: 282 TTKTEWN 288
T KTEW
Sbjct: 123 TVKTEWL 129
Score = 50.2 bits (119), Expect = 2e-08
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 7/60 (11%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-------KGFGYQGSSFHRIIPDF 53
DI IG + GRI ++L D+VP+TA NFR LCT E K ++GS FHRIIP+F
Sbjct: 8 FDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNF 67
>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus
musculus), variant C [TaxId: 10090]}
Length = 182
Score = 125 bits (314), Expect = 5e-36
Identities = 74/125 (59%), Positives = 91/125 (72%), Gaps = 4/125 (3%)
Query: 167 KKNPQ----VYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRI 222
K+ P V+ D++IG ++VGRI I L ++VP+T ENF L T EKG+GY+GS FHR+
Sbjct: 1 KRGPSVTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRV 60
Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 282
I DFM QGGDFT +GTGG SIYG F DENF LKH G G +SMAN+GP+TNGSQFF+
Sbjct: 61 IKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITL 120
Query: 283 TKTEW 287
TK W
Sbjct: 121 TKPTW 125
Score = 57.5 bits (138), Expect = 8e-11
Identities = 30/53 (56%), Positives = 40/53 (75%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
D++IG ++VGRI I L ++VP+T ENF L T EKG+GY+GS FHR+I DF
Sbjct: 12 FDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDF 64
>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis
elegans, isoform 5 [TaxId: 6239]}
Length = 182
Score = 123 bits (308), Expect = 4e-35
Identities = 73/121 (60%), Positives = 85/121 (70%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
K +VY D++IG + +GRI I L VP+TA NF L KG GY GS FHR+I DF
Sbjct: 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63
Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
M QGGDFT +GTGG+SIYG KF DENF LKH G G LSMAN+G +TNGSQFF+ T KT
Sbjct: 64 MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTP 123
Query: 287 W 287
W
Sbjct: 124 W 124
Score = 59.8 bits (144), Expect = 1e-11
Identities = 27/53 (50%), Positives = 33/53 (62%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
D++IG + +GRI I L VP+TA NF L KG GY GS FHR+I DF
Sbjct: 11 FDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63
>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl
cis-trans isomerase, cyclophilin F {Human (Homo sapiens)
[TaxId: 9606]}
Length = 161
Score = 121 bits (304), Expect = 8e-35
Identities = 99/119 (83%), Positives = 107/119 (89%)
Query: 169 NPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMC 228
NPQVYMDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP FMC
Sbjct: 1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMC 60
Query: 229 QGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
QGGDFTNHNGTGGKSIYG KF+DENFILKHTGPG+LSMANSGPNTNGSQFFL KT+W
Sbjct: 61 QGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 119
Score = 60.3 bits (145), Expect = 7e-12
Identities = 40/53 (75%), Positives = 45/53 (84%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
MDIKIG + GRI + LR D+VP TAENFRCLCTHEKGFG++GSSFHRIIP F
Sbjct: 6 MDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQF 58
>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow
(Bos taurus) [TaxId: 9913]}
Length = 195
Score = 122 bits (307), Expect = 8e-35
Identities = 77/133 (57%), Positives = 92/133 (69%), Gaps = 8/133 (6%)
Query: 163 DPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------Y 214
P NP+V+ D+ IG + VGRI ++L D+VP+TAENFR LCT EKG G +
Sbjct: 8 KPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHF 67
Query: 215 QGSSFHRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTN 274
+G FHRII FM QGGDF+N NGTGG+SIYG KFEDENF KH G+LSMAN+G NTN
Sbjct: 68 KGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTN 127
Query: 275 GSQFFLCTTKTEW 287
GSQFF+ T T
Sbjct: 128 GSQFFITTVPTPH 140
Score = 55.6 bits (133), Expect = 6e-10
Identities = 31/61 (50%), Positives = 39/61 (63%), Gaps = 8/61 (13%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG--------YQGSSFHRIIPD 52
D+ IG + VGRI ++L D+VP+TAENFR LCT EKG G ++G FHRII
Sbjct: 19 FDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKK 78
Query: 53 F 53
F
Sbjct: 79 F 79
>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi
[TaxId: 5693]}
Length = 166
Score = 120 bits (301), Expect = 3e-34
Identities = 70/121 (57%), Positives = 88/121 (72%), Gaps = 1/121 (0%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
+VY DI IG + VGR+ I L + VP+T ENF+ L + E GFGY+GS FHR+I +F
Sbjct: 3 VVTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNF 62
Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
M QGGDFTN +GTGGKSIYG +F+DEN +KH G +SMAN+GPN+NGSQFF+ T T
Sbjct: 63 MIQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTP 121
Query: 287 W 287
W
Sbjct: 122 W 122
Score = 56.8 bits (136), Expect = 1e-10
Identities = 28/53 (52%), Positives = 37/53 (69%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
DI IG + VGR+ I L + VP+T ENF+ L + E GFGY+GS FHR+I +F
Sbjct: 10 FDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNF 62
>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus
fumigatus [TaxId: 5085]}
Length = 171
Score = 118 bits (297), Expect = 1e-33
Identities = 71/123 (57%), Positives = 86/123 (69%), Gaps = 5/123 (4%)
Query: 170 PQVYMDIK-----IGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIP 224
QV+ D++ + +VGRI L VP+TA+NFR LC G GY+ S+FHRIIP
Sbjct: 2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 61
Query: 225 DFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTK 284
+FM QGGDFT NGTGG+SIYG+KF DENF KH G+LSMAN+GPNTNGSQFF+ T
Sbjct: 62 NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 121
Query: 285 TEW 287
T W
Sbjct: 122 TSW 124
Score = 49.1 bits (116), Expect = 8e-08
Identities = 25/52 (48%), Positives = 33/52 (63%)
Query: 2 DIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 53
+ + +VGRI L VP+TA+NFR LC G GY+ S+FHRIIP+F
Sbjct: 12 PVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIPNF 63
>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like
1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 116 bits (292), Expect = 6e-33
Identities = 59/129 (45%), Positives = 79/129 (61%), Gaps = 10/129 (7%)
Query: 160 ASIDPKTKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSF 219
A+I P + + P VY++ +G I ++L + P+T +NF L G + F
Sbjct: 2 AAIPPDSWQPPNVYLETSMG-----IIVLELYWKHAPKTCKNFAELARRGYYNGTK---F 53
Query: 220 HRIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQF 278
HRII DFM QGGD T G GG SIYG +FEDE + LK TG G+L+MAN+GP+TNGSQF
Sbjct: 54 HRIIKDFMIQGGDPTG-TGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQF 112
Query: 279 FLCTTKTEW 287
F+ T+W
Sbjct: 113 FVTLAPTQW 121
Score = 39.7 bits (92), Expect = 1e-04
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G I ++L + P+T +NF L G + FHRII DF+
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELARRGYYNGTK---FHRIIKDFM 61
>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo
sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20
[TaxId: 9606]}
Length = 173
Score = 114 bits (285), Expect = 7e-32
Identities = 73/128 (57%), Positives = 91/128 (71%), Gaps = 5/128 (3%)
Query: 166 TKKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFH 220
+ NP V+ D+ IG QEVGR+ I+L D+VP+TAENFR CT E GY+GS+FH
Sbjct: 3 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFH 62
Query: 221 RIIPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFL 280
R+I DFM QGGDF N +GTG SIY F DENF L+H+ PG+LSMANSGP+TNG QFF+
Sbjct: 63 RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 122
Query: 281 CTTKTEWN 288
+K +W
Sbjct: 123 TCSKCDWL 130
Score = 47.6 bits (112), Expect = 2e-07
Identities = 32/58 (55%), Positives = 40/58 (68%), Gaps = 5/58 (8%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHE-----KGFGYQGSSFHRIIPDF 53
D+ IG QEVGR+ I+L D+VP+TAENFR CT E GY+GS+FHR+I DF
Sbjct: 11 FDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDF 68
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans
isomerase-like 2, Cyclophilin-60, PPI domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 112 bits (280), Expect = 5e-31
Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 5/105 (4%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
G + ++L DL P+T ENF LC K Y G+ FHR I +F+ QGGD T GTGG+S
Sbjct: 10 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPT-GTGTGGES 65
Query: 244 IYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
+G F+DE L HTG G+LSMANSGPN+N SQFF+ +
Sbjct: 66 YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFITFRSCAY 110
Score = 49.7 bits (118), Expect = 5e-08
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
G + ++L DL P+T ENF LC K Y G+ FHR I +FV
Sbjct: 10 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFV 50
>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium
yoelii [TaxId: 5861]}
Length = 186
Score = 104 bits (260), Expect = 6e-28
Identities = 68/125 (54%), Positives = 86/125 (68%), Gaps = 5/125 (4%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-----YQGSSFHRI 222
NP V+MDI +G +G+ +L ++VP+T+ENFR CT E Y+ + FHR+
Sbjct: 15 SNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRV 74
Query: 223 IPDFMCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCT 282
I +FM QGGDF NHNG+G SIYG KF+DENF +KH G+LSMANSGPNTNG QFF+ T
Sbjct: 75 IKEFMIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITT 134
Query: 283 TKTEW 287
K EW
Sbjct: 135 KKCEW 139
Score = 46.8 bits (110), Expect = 5e-07
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFG-----YQGSSFHRIIPDF 53
MDI +G +G+ +L ++VP+T+ENFR CT E Y+ + FHR+I +F
Sbjct: 21 MDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 78
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human
(Homo sapiens) [TaxId: 9606]}
Length = 159
Score = 97.2 bits (241), Expect = 2e-25
Identities = 53/115 (46%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 174 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDF 233
M + + +VG I I++ + P+T ENF LC G FHR I FM Q GD
Sbjct: 1 MSVTL-HTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI---FHRNIKGFMVQTGDP 56
Query: 234 TNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
G GG SI+G KFEDE + LKH GV+SMAN+GPNTNGSQFF+ K
Sbjct: 57 -TGTGRGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFITYGKQPH 110
Score = 41.0 bits (95), Expect = 4e-05
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFV 54
M + + +VG I I++ + P+T ENF LC G FHR I F+
Sbjct: 1 MSVTL-HTDVGDIKIEVFCERTPKTCENFLALCASNYYNGCI---FHRNIKGFM 50
>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 171
Score = 94.2 bits (233), Expect = 3e-24
Identities = 42/116 (36%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDFMCQGG 231
G I I L + P+T NF L K + Y G+ FHR+I FM QGG
Sbjct: 13 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 72
Query: 232 DFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
D GTG ++ + L+ P +L+MAN+GP TNGSQFF+ KT
Sbjct: 73 DP---TGTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPH 125
Score = 48.7 bits (115), Expect = 1e-07
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFG------------YQGSSFHRIIPDFV 54
G I I L + P+T NF L K + Y G+ FHR+I F+
Sbjct: 13 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFM 68
>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD
repeat-containing protein 1, PPWD1, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 86.2 bits (212), Expect = 3e-21
Identities = 47/120 (39%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 168 KNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFM 227
+ P+ D I +G I +L P+T ENF C H + Y G +FHRII FM
Sbjct: 3 EGPKRVSDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFM 59
Query: 228 CQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
Q GD T G G ++ + L+H P LSMAN+G NTNGSQFF+ T W
Sbjct: 60 IQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPW 119
Score = 42.3 bits (98), Expect = 2e-05
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 1 MDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKH 60
D I +G I +L P+T ENF C H + Y G +FHRII F+
Sbjct: 9 SDSAIIHTSMGDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDP 65
Query: 61 Q 61
Sbjct: 66 T 66
>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693
{Plasmodium yoelii [TaxId: 5861]}
Length = 169
Score = 77.6 bits (190), Expect = 5e-18
Identities = 43/122 (35%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
+ Y+ I G ++L + P+T NF LC +
Sbjct: 12 GHTERGYITIYTNL---GDFEVELYWYHSPKTCLNFYTLCEMGFYDNTI----FHRVIPN 64
Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDE-NFILKHTGPGVLSMANSGPNTNGSQFFLCTTKT 285
G G GGKSIYG FEDE N LKHTG G+LSM+N+GPNTN SQFF+
Sbjct: 65 FVIQGGDPTGTGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNGPNTNSSQFFITLAPL 124
Query: 286 EW 287
Sbjct: 125 PH 126
Score = 31.4 bits (70), Expect = 0.067
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLC 33
+G ++L + P+T NF LC
Sbjct: 25 LGDFEVELYWYHSPKTCLNFYTLC 48
>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 74.6 bits (182), Expect = 4e-17
Identities = 27/105 (25%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 184 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGKS 243
G I I+ D P T +NF C + Y + FHR+I FM Q G K+
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQ--GGGFEPGMKQKA 63
Query: 244 IYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEWN 288
+ N LK+T + P++ +QFF+ ++
Sbjct: 64 TKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFL 108
Score = 43.7 bits (102), Expect = 5e-06
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 11 GRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKH 60
G I I+ D P T +NF C + Y + FHR+I F+
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC---REGFYNNTIFHRVINGFMIQGGGF 55
>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w
{Plasmodium falciparum [TaxId: 5833]}
Length = 155
Score = 73.8 bits (180), Expect = 7e-17
Identities = 49/106 (46%), Positives = 62/106 (58%), Gaps = 5/106 (4%)
Query: 183 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFMCQGGDFTNHNGTGGK 242
+G I I L Y +T +NF + FHR+I FM Q GD + GTGG+
Sbjct: 10 MGDIHISLFYKECKKTVQNFSVHSINGYYNNCI---FHRVIKHFMVQTGDPSGD-GTGGE 65
Query: 243 SIYGNKFEDENF-ILKHTGPGVLSMANSGPNTNGSQFFLCTTKTEW 287
SI+GN+FEDE F L H+ P ++SMAN GPNTNGSQFF+ T W
Sbjct: 66 SIWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPW 111
Score = 39.5 bits (91), Expect = 1e-04
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKH 60
+G I I L Y +T +NF + + +
Sbjct: 10 MGDIHISLFYKECKKTVQNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSGD 60
>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
{Escherichia coli [TaxId: 562]}
Length = 166
Score = 70.7 bits (172), Expect = 1e-15
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 167 KKNPQVYMDIKIGKQEVGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDF 226
K +P V + G I ++L P + +NF FHR+IP F
Sbjct: 2 KGDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSGFYNNTT---FHRVIPGF 53
Query: 227 MCQGGDFTNHNGTGGKSIYGNKFEDENFILKHTGPGVLSMANSGPNTNGSQFFLCTTKTE 286
M QGG FT + D L++T + + ++ SQFF+
Sbjct: 54 MIQGGGFTEQMQQKKPNPPIKNEADNG--LRNTRGTIAMARTADKDSATSQFFINVADNA 111
Query: 287 W 287
+
Sbjct: 112 F 112
Score = 38.8 bits (89), Expect = 2e-04
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)
Query: 10 VGRITIQLRYDLVPRTAENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSN 69
G I ++L P + +NF FHR+IP F+ +
Sbjct: 13 AGNIELELDKQKAPVSVQNFVDYVNSGFYNNTT---FHRVIPGFMIQGGGFTEQMQQKKP 69
Query: 70 LGGLAEEVDDK 80
+ E D+
Sbjct: 70 NPPIKNEADNG 80
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 36.6 bits (84), Expect = 3e-04
Identities = 42/79 (53%), Positives = 51/79 (64%), Gaps = 24/79 (30%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETE------------------------KH 106
GGLAEEVDDKVL+AAFIPFGD+ DIQ+PLDYETE +
Sbjct: 11 GGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNES 70
Query: 107 QLFGRIIRVNLAKPQKVQQ 125
+LFGR IRVNLAKP ++++
Sbjct: 71 ELFGRTIRVNLAKPMRIKE 89
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 35.3 bits (81), Expect = 0.001
Identities = 11/69 (15%), Positives = 26/69 (37%), Gaps = 18/69 (26%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDY------------------ETEKHQLFGRI 112
GG+A + D+++ F PFG +++I++ + + G +
Sbjct: 24 GGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHV 83
Query: 113 IRVNLAKPQ 121
++ K
Sbjct: 84 VKCYWGKES 92
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 35.0 bits (80), Expect = 0.002
Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 23/75 (30%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
LA + + L F G + D+++ D + + +
Sbjct: 24 MQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQR 83
Query: 108 LFGRIIRVNLAKPQK 122
L G I V ++ +K
Sbjct: 84 LLGVPIIVQASQAEK 98
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 34.2 bits (78), Expect = 0.003
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 24/84 (28%)
Query: 65 SRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYET------------------- 103
+ S+L GL + ++ L F FG+++ +Q+ D +T
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 104 ---EKHQLFGRIIRVNLAKPQKVQ 124
++H + GR L ++ Q
Sbjct: 66 VMSQRHMIDGRWCDCKLPNSKQSQ 89
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 34.1 bits (78), Expect = 0.003
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 17/73 (23%)
Query: 71 GGLA-EEVDDKVLNAAFIPFGDLVDIQMPLDY----------------ETEKHQLFGRII 113
G L V + A F +G +V + + + + G+++
Sbjct: 21 GNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVL 80
Query: 114 RVNLAKPQKVQQT 126
+NLA KV ++
Sbjct: 81 DINLAAEPKVNRS 93
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 33.5 bits (76), Expect = 0.005
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 24/83 (28%)
Query: 64 KSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK---------------- 105
KS N+ L + +D+K L F FG+++ ++ D K
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERA 64
Query: 106 ------HQLFGRIIRVNLAKPQK 122
L R + V K +K
Sbjct: 65 IEKMNGMLLNDRKVFVGRFKSRK 87
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 33.4 bits (76), Expect = 0.005
Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 24/73 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKH------------------------ 106
G L +V + +L F P G ++ I++ D T +
Sbjct: 6 GDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFD 65
Query: 107 QLFGRIIRVNLAK 119
+ G+ +R+ ++
Sbjct: 66 VIKGKPVRIMWSQ 78
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 32.7 bits (74), Expect = 0.007
Identities = 12/69 (17%), Positives = 26/69 (37%)
Query: 54 VSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRII 113
+S L+ F + AF+ + D ++ + K +L G+I+
Sbjct: 9 LSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIM 68
Query: 114 RVNLAKPQK 122
V+ + +K
Sbjct: 69 EVDYSVSKK 77
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.7 bits (74), Expect = 0.009
Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 17/74 (22%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP--------LDYETE---------KHQLFGRII 113
G ++ + L F +GD++D+ +P + + + + G +
Sbjct: 11 GRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGEDLIIKGISV 70
Query: 114 RVNLAKPQKVQQTS 127
++ A+P+ +
Sbjct: 71 HISNAEPKHNSNSG 84
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 32.3 bits (73), Expect = 0.011
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 24/74 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP-------------LDYETEK-----------H 106
L +++ D+ L A F G + ++ +D+ +E
Sbjct: 8 NYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGI 67
Query: 107 QLFGRIIRVNLAKP 120
+ + ++V+ A+P
Sbjct: 68 TVRNKRLKVSYARP 81
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 32.2 bits (73), Expect = 0.012
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 26/81 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD--------------YETE------------ 104
+ + + + + F FG+L +++P + T+
Sbjct: 14 RNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCH 73
Query: 105 KHQLFGRIIRVNLAKPQKVQQ 125
L+GR + + A + Q
Sbjct: 74 STHLYGRRLVLEWADSEVTVQ 94
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 31.9 bits (72), Expect = 0.019
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 22/77 (28%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD-----------YETEK-----------HQL 108
G L+ +V + ++ F G +M + + + ++
Sbjct: 14 GNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI 73
Query: 109 FGRIIRVNLAKPQKVQQ 125
G+ ++VN A Q+
Sbjct: 74 LGKEVKVNWATTPSSQK 90
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 31.5 bits (71), Expect = 0.022
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 24/76 (31%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
GGL E+V + +L F+ G +V+ MP D T +
Sbjct: 15 GGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMI 74
Query: 107 QLFGRIIRVNLAKPQK 122
+L+G+ IRVN A
Sbjct: 75 KLYGKPIRVNKASAHN 90
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 31.2 bits (70), Expect = 0.031
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 55 SFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDY-ETEKHQLFGRII 113
++Q L G ++ + +N AFI D Q +DY T +FG+ +
Sbjct: 19 GKNLRYQ-LLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 77
Query: 114 RVNLAKPQK 122
RV+L++ K
Sbjct: 78 RVHLSQKYK 86
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 30.5 bits (68), Expect = 0.050
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 24/74 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETE------------------------KH 106
L + + + + F G++ ++ D T
Sbjct: 8 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGL 67
Query: 107 QLFGRIIRVNLAKP 120
+L + I+V+ A+P
Sbjct: 68 RLQTKTIKVSYARP 81
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 30.1 bits (67), Expect = 0.059
Identities = 2/74 (2%), Positives = 10/74 (13%), Gaps = 24/74 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
+ + +
Sbjct: 7 TNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 66
Query: 107 QLFGRIIRVNLAKP 120
++ G + ++ P
Sbjct: 67 KIEGYTLVTKVSNP 80
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 29.9 bits (67), Expect = 0.083
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 18/68 (26%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP-------LDYETEK-----------HQLFGRI 112
G L ++ ++ + F +G ++ + + ET L G+
Sbjct: 14 GNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQ 73
Query: 113 IRVNLAKP 120
+RV A
Sbjct: 74 LRVRFACH 81
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 29.9 bits (67), Expect = 0.088
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 24/76 (31%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD-------------YETEK-----------H 106
G L+ ++ + F GD+ I M LD Y +
Sbjct: 13 GNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGT 72
Query: 107 QLFGRIIRVNLAKPQK 122
+L RIIR + K
Sbjct: 73 RLDDRIIRTDWDAGFK 88
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 29.6 bits (66), Expect = 0.096
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 53 FVS-FMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGR 111
+V L+ FS G + + D N AF+ + + + E Q+
Sbjct: 9 YVYGEDMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVA-ELNGTQVESV 67
Query: 112 IIRVNLAKPQKV 123
++VN+A+ Q +
Sbjct: 68 QLKVNIARKQPM 79
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 29.6 bits (66), Expect = 0.100
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 54 VSFMTKHQSLKSRFSNLGGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRII 113
+ T + ++ F+N+ A E K+ + AF+ F + D + L G I
Sbjct: 16 LMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMK-ALNGKVLDGSPI 74
Query: 114 RVNLAKPQK 122
V LAKP
Sbjct: 75 EVTLAKPVD 83
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 28.4 bits (63), Expect = 0.21
Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 23/71 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP------------LDYETEK-----------HQ 107
L V D + F FG L + + +E +
Sbjct: 6 SNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVP 65
Query: 108 LFGRIIRVNLA 118
L GR + + L
Sbjct: 66 LDGRPMNIQLV 76
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 28.4 bits (63), Expect = 0.23
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 23/71 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYET-----------------------EKHQ 107
GGL+ + + L F FG++ + + D T +H+
Sbjct: 6 GGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHE 65
Query: 108 LFGRIIRVNLA 118
L + I +A
Sbjct: 66 LDSKTIDPKVA 76
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 28.8 bits (64), Expect = 0.30
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 21/76 (27%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP----------LDYETEK-----------HQLF 109
L ++ + + F +G + I++ + YE +
Sbjct: 13 RNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVC 72
Query: 110 GRIIRVNLAKPQKVQQ 125
R + V + Q
Sbjct: 73 NRYLVVLYYNANRAFQ 88
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 28.0 bits (62), Expect = 0.30
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRI 112
GGL+ + ++ + F FG++ I++P+D +T K + F I
Sbjct: 5 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFI 46
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 27.8 bits (61), Expect = 0.34
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 23/71 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
GGL+ + + F FG + D + D T + H+
Sbjct: 5 GGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHE 64
Query: 108 LFGRIIRVNLA 118
+ +++ A
Sbjct: 65 INNKMVECKKA 75
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.2 bits (62), Expect = 0.37
Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 24/76 (31%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK------------------------H 106
L+ V ++ L + F F + + T + +
Sbjct: 24 KNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGY 83
Query: 107 QLFGRIIRVNLAKPQK 122
+L+G+I+ + K +K
Sbjct: 84 KLYGKILVIEFGKNKK 99
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 28.1 bits (62), Expect = 0.37
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 21/73 (28%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD----------YETEK-----------HQLF 109
G L ++ K + F +G + DI + +E + +
Sbjct: 20 GNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD 79
Query: 110 GRIIRVNLAKPQK 122
G +RV + +
Sbjct: 80 GYRLRVEFPRSGR 92
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 28.0 bits (62), Expect = 0.41
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRI 112
L + D L+ F +G +V + D T + + +
Sbjct: 12 TNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 53
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 27.7 bits (61), Expect = 0.44
Identities = 8/79 (10%), Positives = 21/79 (26%), Gaps = 27/79 (34%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP----------------LDYETEK--------- 105
L ++ L F G + + ++Y+ +
Sbjct: 4 KNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQL 63
Query: 106 --HQLFGRIIRVNLAKPQK 122
H + G + V +++
Sbjct: 64 QGHTVDGHKLEVRISERAT 82
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 27.4 bits (60), Expect = 0.52
Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 8/76 (10%)
Query: 54 VSFMTKHQSLKSRFSNLGGLAEEV-------DDKVLNAAFIPFGDLVDIQMPLDYETEKH 106
+ + L FS G + + AFI F ++
Sbjct: 6 LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE-AMNGQ 64
Query: 107 QLFGRIIRVNLAKPQK 122
L R I V+ A +
Sbjct: 65 YLCNRPITVSYAFKKD 80
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 27.3 bits (60), Expect = 0.54
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 23/71 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEK-----------------------HQ 107
GGL+ + K L F FG++VD + LD T + H+
Sbjct: 5 GGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK 64
Query: 108 LFGRIIRVNLA 118
L G++I A
Sbjct: 65 LNGKVIDPKRA 75
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 27.7 bits (61), Expect = 0.57
Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 24/74 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETE------------------------KH 106
L+E+ + L F PFG + I + D T
Sbjct: 14 TNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGF 73
Query: 107 QLFGRIIRVNLAKP 120
I+ V AKP
Sbjct: 74 GYDHLILNVEWAKP 87
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 27.3 bits (60), Expect = 0.64
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 22/72 (30%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLD-----------YETEK-----------HQL 108
+ D L F FG ++D+++ + +E +
Sbjct: 17 SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV 76
Query: 109 FGRIIRVNLAKP 120
GR I VN A
Sbjct: 77 EGRKIEVNNATA 88
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.9 bits (61), Expect = 0.66
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 105 KHQLFGRIIRVNLAKPQKVQQT 126
K ++ R I + + +V+ +
Sbjct: 78 KERIGHRYIEIFKSSRAEVRTS 99
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.7 bits (61), Expect = 0.70
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 54 VSFMTKHQSLKSRFSNLGGLAEEVDDKVLNA------AFIPFGDLVDIQMPLDYETEKHQ 107
+SF T +SL++ + G L + V + + F+ F + ++ + H
Sbjct: 28 LSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM--AARPHS 85
Query: 108 LFGRIIRVNLAKP 120
+ GR++ A
Sbjct: 86 IDGRVVEPKRAVA 98
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 27.5 bits (60), Expect = 0.76
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 96 QMPLDYETEKHQLFGRIIRVNLAKPQK 122
L+ E +L GR ++V+LA +
Sbjct: 69 AASLEAEGGGLKLDGRQLKVDLAVTRD 95
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 28.4 bits (62), Expect = 0.77
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Query: 27 ENFRCLCTHEKGFGYQGSSFHRIIPDFVSFMTKHQSLKSRFSNLGGLAEEVDD------K 80
E R + + + +I + T+ L+ F G + K
Sbjct: 78 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 137
Query: 81 VLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSS 128
AF+ F D + + + H + G V A ++ ++S
Sbjct: 138 KRGFAFVTFDDHDSVDKIV--IQKYHTVNGHNCEVRKALSKQEMASAS 183
Score = 27.7 bits (60), Expect = 1.4
Identities = 15/71 (21%), Positives = 28/71 (39%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQQTSSKP 130
GGL+ E D+ L + F +G L D + D T++ + FG + + +
Sbjct: 12 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK 71
Query: 131 VWASDTWLQKH 141
V ++
Sbjct: 72 VDGRVVEPKRA 82
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 26.9 bits (59), Expect = 0.78
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 85 AFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQK 122
AF + D+ + QL + + V A
Sbjct: 46 AFCEYVDINVTDQAIA-GLNGMQLGDKKLLVQRASVGA 82
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 27.3 bits (60), Expect = 0.82
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 105 KHQLFGRIIRVNLAKPQK 122
+ QL+G I V+ A+P+
Sbjct: 69 RIQLWGHQIAVDWAEPEI 86
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 27.4 bits (60), Expect = 0.90
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 76 EVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQKVQ 124
++ A + D Q+ + H+L G+ IR+ L+K Q VQ
Sbjct: 34 KILFNKKENALVQMADGNQAQLAMS-HLNGHKLHGKPIRITLSKHQNVQ 81
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 27.0 bits (59), Expect = 0.93
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 25/84 (29%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP-------------LDYETE-----------KH 106
L+ ++ L F +G L ++ P + +
Sbjct: 14 RNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQ 73
Query: 107 QLFGRIIRVNLAKPQKVQQTSSKP 130
GR++ V + +K + + S P
Sbjct: 74 VFQGRMLHVLPSTIKK-EASQSGP 96
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 27.0 bits (59), Expect = 1.1
Identities = 10/75 (13%), Positives = 19/75 (25%), Gaps = 23/75 (30%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETE-----------------------KHQ 107
G L +V ++ + F E +
Sbjct: 21 GNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEES 80
Query: 108 LFGRIIRVNLAKPQK 122
L + IRV++A +
Sbjct: 81 LGNKRIRVDVADQAQ 95
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.6 bits (58), Expect = 1.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 106 HQLFGRIIRVNLAKPQKVQQ 125
+ GR +RV+ A +K ++
Sbjct: 73 REFSGRALRVDNAASEKNKE 92
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 26.2 bits (57), Expect = 1.5
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 24/75 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP-------------LDYETEK-----------H 106
+ EE + + F +G++ +I + ++YET K
Sbjct: 13 TSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA 72
Query: 107 QLFGRIIRVNLAKPQ 121
++ G+ I+V+ +
Sbjct: 73 EIMGQTIQVDWCFVK 87
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.9 bits (56), Expect = 2.3
Identities = 6/77 (7%), Positives = 18/77 (23%), Gaps = 19/77 (24%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP------LDYETE-----------KHQLFGRII 113
L ++ + + ++ + + ++ G+ +
Sbjct: 11 KNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDL 70
Query: 114 RVNLAKPQKVQQTSSKP 130
V L S P
Sbjct: 71 IVQLQPTDA--LLCSGP 85
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 25.8 bits (56), Expect = 2.6
Identities = 6/71 (8%), Positives = 22/71 (30%), Gaps = 19/71 (26%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP--------LDYETEK-----------HQLFGR 111
L+ + + L F ++ + +++++E ++ GR
Sbjct: 22 KNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR 81
Query: 112 IIRVNLAKPQK 122
+ + +
Sbjct: 82 SVSLYYTGEKG 92
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 25.5 bits (55), Expect = 2.6
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 102 ETEKHQLFGRIIRVNLAKPQ 121
+ + L R I V+LA +
Sbjct: 66 QMNRSLLGNREISVSLADKK 85
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 25.8 bits (56), Expect = 2.7
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 62 SLKSRFSNL--GGLAEEVDDKVLNAAFIPFGDLVDIQMPLDYETEKHQLFGRI 112
S R +NL GL + + K L F +G ++ ++ +D T + G I
Sbjct: 1 SASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFI 53
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.5 bits (55), Expect = 3.0
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 106 HQLFGRIIRVNLAKPQK 122
+ GR IRV+ A
Sbjct: 70 KSVDGRQIRVDQAGKSS 86
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 25.6 bits (55), Expect = 3.6
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 102 ETEKHQLFGRIIRVNLAKPQKVQQ 125
K + R I+V+ + + +
Sbjct: 78 CRHKQYMGNRFIQVHPITKKGMLE 101
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.1 bits (54), Expect = 4.7
Identities = 8/79 (10%), Positives = 19/79 (24%), Gaps = 21/79 (26%)
Query: 70 LGGLAEEVDDKVLNAAFIPFGDLVDIQMP-----------LDYETE----------KHQL 108
+ GL + + F P + +++ T K +
Sbjct: 20 MRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANM 79
Query: 109 FGRIIRVNLAKPQKVQQTS 127
R + + L +
Sbjct: 80 QHRYVELFLNSTAGTSGSG 98
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 25.1 bits (54), Expect = 4.8
Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 32/88 (36%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDL--------VDIQMPLDYETEK----------------- 105
GL + V L F G + I + LD ET K
Sbjct: 14 QGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKA 73
Query: 106 -------HQLFGRIIRVNLAKPQKVQQT 126
G ++V+LA+ + +
Sbjct: 74 AVEWFDGKDFQGSKLKVSLARKKPPMNS 101
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 25.0 bits (54), Expect = 5.0
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 86 FIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQK 122
F+ + + V Q + Q+ + ++V L + +
Sbjct: 64 FVSYDNPVSAQAAIQ-SMNGFQIGMKRLKVQLKRSKN 99
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 24.6 bits (53), Expect = 5.2
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 23/71 (32%)
Query: 71 GGLAEEVDDKVLNAAFIPFGDLVDIQMP-------------LDYETEK----------HQ 107
GGL+ E D+ L + F +G L D + + Y T + H+
Sbjct: 12 GGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK 71
Query: 108 LFGRIIRVNLA 118
+ GR++ A
Sbjct: 72 VDGRVVEPKRA 82
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 24.2 bits (52), Expect = 8.3
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 86 FIPFGDLVDIQMPLDYETEKHQLFGRIIRVNLAKPQ 121
F+ F ++ L + + + +R+ AK
Sbjct: 50 FVIFKEVSSATNALR-SMQGFPFYDKPMRIQYAKTD 84
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 24.7 bits (53), Expect = 8.6
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 9/110 (8%)
Query: 91 DLVDIQMPLDYETEKHQLFGRIIRV-NLAKPQKVQQTSSKPVWASDTWLQKHAGETLDPE 149
L + L+Y E+ I L + TS + + +KH +T
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR 66
Query: 150 NQIDPA--EKLAASIDPKTKKNPQ-----VYMDIKIGKQE-VGRITIQLR 191
+DPA E P T+ + + + + +G + I L
Sbjct: 67 KTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLS 116
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.420
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,103,173
Number of extensions: 51986
Number of successful extensions: 285
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 109
Length of query: 289
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 205
Effective length of database: 1,254,276
Effective search space: 257126580
Effective search space used: 257126580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)