RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10328
(560 letters)
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 526 bits (1358), Expect = 0.0
Identities = 222/363 (61%), Positives = 251/363 (69%), Gaps = 46/363 (12%)
Query: 28 PSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFID 87
+ FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFNQHVFKLEQEEYL+EGIEW FID
Sbjct: 366 QTSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFID 425
Query: 88 FYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGS 147
FYDNQPCIDLIESKLGIL LLDEEC++PKGSD SWA+KLY K K + HF KPRFG S
Sbjct: 426 FYDNQPCIDLIESKLGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPHFEKPRFGQTS 485
Query: 148 FLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTN---------TSQQSSTKSGAKR 198
F VKHFADDV YD GFLEKNRDTV +E + +L +S N SS+ S AK
Sbjct: 486 FTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAK- 544
Query: 199 MAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFE 258
+ A P ++KQHK TVGSQF+ SL LM TLNST PHYIRCIKPND K+ F+
Sbjct: 545 -----SKPAAKRPPKRAKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFK 599
Query: 259 FNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTY 318
F E R+ +QQLRACGVLETIRISAAGFPSRWTY
Sbjct: 600 F---------------EPKRV-------------LQQLRACGVLETIRISAAGFPSRWTY 631
Query: 319 GEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLE 378
EF RYRVL + ++ E+I+T I D DKY+FGKTKIFFR+GQVA+LE
Sbjct: 632 EEFAQRYRVL---VPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLE 688
Query: 379 KLR 381
KLR
Sbjct: 689 KLR 691
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 471 bits (1215), Expect = e-152
Identities = 214/528 (40%), Positives = 299/528 (56%), Gaps = 50/528 (9%)
Query: 29 SRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDF 88
S FIGVLDIYGFE F+ N+FEQ CINY NEKLQQ FNQH+FKLEQEEY++EGIEW FID+
Sbjct: 427 SNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDY 486
Query: 89 YDNQPCIDLIESK--LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAG 146
+DNQPCIDLIE K LGIL LLDEEC MP +D S+ KL + + + F K RF
Sbjct: 487 FDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKSRFRDN 546
Query: 147 SFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASK 206
F+VKH+A DV YD GFL+KN+D + ++ + LL +STN +
Sbjct: 547 KFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEENI-------- 598
Query: 207 TATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQ 266
+SK T+GS+F+ESL+ LM TLNST PHYIRCIKPN+ K + F+
Sbjct: 599 -------ESKGRFPTLGSRFKESLNSLMSTLNSTQPHYIRCIKPNEEKSPWTFD-----N 646
Query: 267 QLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYR 326
Q+ VL QLR CGVLETIRIS AGFPSRWT+ EF RYR
Sbjct: 647 QM----VL-------------------SQLRCCGVLETIRISRAGFPSRWTFDEFVQRYR 683
Query: 327 VLCGNLKQY---NTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAE 383
+L K + T + I+ + D KY+ G TK+FF++G +A LE +R
Sbjct: 684 IL-SPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDA 742
Query: 384 KLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQSA 443
KL IQ+ +R +R++YL LK + +Q G+ RRLV + + R +++Q
Sbjct: 743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPL 802
Query: 444 VRAFIRRRQYLRLRALVLGLQCAA-RGMLVRREVRRVRENRAALRIQTRVRGFLARRNYE 502
+ R++Y A ++ LQ R +R +A + IQ R A++ +
Sbjct: 803 LSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFS 862
Query: 503 ATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIIS 550
+ + + Q++ R LA+++ +++K + +S+ +K +N LE++II
Sbjct: 863 LLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIE 910
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 435 bits (1122), Expect = e-146
Identities = 177/380 (46%), Positives = 223/380 (58%), Gaps = 64/380 (16%)
Query: 5 NRNLSQSQSSSSSNQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQF 64
N++LS S+ FIGVLDIYGFE F+ N+FEQ CINYANEKLQQ F
Sbjct: 358 NQSLSFKDGST--------------YFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFF 403
Query: 65 NQHVFKLEQEEYLQEGIEWKFIDFYDNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWA 123
NQHVFKLEQEEY +EGI+W FIDF+DNQ CIDLIE K GIL LLDEEC+ PKG+D ++
Sbjct: 404 NQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKGTDQTFL 463
Query: 124 EKLYTKCSDKWSKHFVKP-RFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHS 182
EKL HF KP + G F++KH+A DVTYD GFLEKN+DT+ ++ I LL S
Sbjct: 464 EKLNQHHKK--HPHFSKPKKKGRTEFIIKHYAGDVTYDVTGFLEKNKDTLSDDLIELLQS 521
Query: 183 STNTSQQSSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIP 242
S N +A+L S + ++ SK+ +TVGSQF+E L+ LM TLNST P
Sbjct: 522 SKN-----------PLIASLFPS---GVSNAGSKKRFQTVGSQFKEQLNELMDTLNSTNP 567
Query: 243 HYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVL 302
H+IRCIKPN+ K+ +F++ + QLR GVL
Sbjct: 568 HFIRCIKPNEEKKP----------------------------GDFDSSLVLHQLRYLGVL 599
Query: 303 ETIRISAAGFPSRWTYGEFYNRYRVLC-GNLKQYNTAVHSMNEIGEHIVTSSIADCDKYK 361
E IRI AGFP R + EF RYRVL + + E ++ S D D+Y+
Sbjct: 600 ENIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGG---DAKKACEALLQSLGLDEDEYQ 656
Query: 362 FGKTKIFFRSGQVAYLEKLR 381
GKTK+F R GQ+A LE+LR
Sbjct: 657 LGKTKVFLRPGQLAELEELR 676
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 380 bits (979), Expect = e-124
Identities = 163/365 (44%), Positives = 204/365 (55%), Gaps = 48/365 (13%)
Query: 18 NQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYL 77
N+ + + + FIGVLDIYGFE F+ N+FEQ CINYANEKLQQ FN H+FKLEQEEY+
Sbjct: 351 NEALSAKLQKAAAFIGVLDIYGFEIFEKNSFEQLCINYANEKLQQFFNHHMFKLEQEEYV 410
Query: 78 QEGIEWKFIDF-YDNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWS 135
+EGI W FID+ DNQ CIDLIE K GIL LLDEEC+ PK +D ++ EKL S K
Sbjct: 411 REGIAWTFIDYGLDNQACIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLLDTFSSK-H 469
Query: 136 KHFVKPRF--GAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTK 193
HF KPRF G SF VKH+A DV Y+ GFLEKN+D ++++ I+LL SS++
Sbjct: 470 PHFSKPRFGQGDTSFTVKHYAGDVEYNATGFLEKNKDPLFDDLISLLKSSSDPLVLELFP 529
Query: 194 SGAKR----MAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIK 249
A K + +T GSQF+ESL LM+TL ST PH++RCIK
Sbjct: 530 EEELDEEEFAGRYARLGCGK-GKDGKKSNFETAGSQFKESLGNLMKTLRSTNPHFVRCIK 588
Query: 250 PNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISA 309
PN+ K A F++ + QLR GVLE IRI AG
Sbjct: 589 PNEKKAAGPFDSSLVLHQLRCLGVLEGIRIRRAG-------------------------- 622
Query: 310 AGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIG----EHIVTSSIADCDKYKFGKT 365
FP+R T+ EF RYR+L E I+ S D ++Y+ GKT
Sbjct: 623 --FPNRITFDEFLQRYRLLAPK------TNPWWVGDAKKGCELILDSLSLDKEEYRKGKT 674
Query: 366 KIFFR 370
KIFFR
Sbjct: 675 KIFFR 679
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 372 bits (958), Expect = e-121
Identities = 161/354 (45%), Positives = 210/354 (59%), Gaps = 36/354 (10%)
Query: 29 SRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDF 88
S FIG+LDI+GFE F+ N+FEQ CINYANEKLQQ FNQHVFKLEQEEY +EGI+W+ IDF
Sbjct: 361 SLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDF 420
Query: 89 YDNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGS 147
DNQ IDLIE K G+L LLDEEC PKG+D ++ EKL K + + +
Sbjct: 421 TDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSN-NAFYPAKKNAPTE 479
Query: 148 FLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKT 207
F +KH+A DVTYD GFLEKN+D + E ++LL SS+N + +S + + T
Sbjct: 480 FTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGST 539
Query: 208 ATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQ 267
S K+ +TVGSQFR SL LM TLNST PH+IRCIKPN+ K+ F++ +
Sbjct: 540 ---SSKGKKKKGQTVGSQFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGK---- 592
Query: 268 LRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRV 327
VL QQLR G+LETIRI GF R + EF +RYR
Sbjct: 593 -----VL-------------------QQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRF 628
Query: 328 LCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLR 381
L +L + V + E ++ D+++ GKTK+F + GQ++ LEK+R
Sbjct: 629 LAPDLLE---KVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 355 bits (912), Expect = e-115
Identities = 153/359 (42%), Positives = 202/359 (56%), Gaps = 54/359 (15%)
Query: 30 RFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFY 89
IGVLDIYGFE+F +N+FEQFCIN NEKLQQ FNQHVFK+EQEEY +E I+W +I+F
Sbjct: 367 SLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFV 426
Query: 90 DNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSF 148
DNQ +DLIE K GI+ LLDE C PK + ++A+KLY D K F KP+ +F
Sbjct: 427 DNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKD--HKRFEKPKLSRTAF 484
Query: 149 LVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTA 208
+ H+A DVTY T FL+KN+D V E ALL++S + A
Sbjct: 485 TIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCS---------------FVAGLFP 529
Query: 209 TLPSSKSKQHKKT-VGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQ 267
LP SK K + +GS+F++ L LM TL++T PHYIRCIKPN+ + F +QQ
Sbjct: 530 PLPEETSKSSKFSSIGSRFKQQLQSLMETLSTTEPHYIRCIKPNNVLKPGIFENENVLQQ 589
Query: 268 LRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRV 327
LR CG GVLE IRIS AG+P+R T+ EF +R+ +
Sbjct: 590 LR-CG---------------------------GVLEAIRISCAGYPTRRTFDEFLDRFGI 621
Query: 328 LCGN-LKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKL 385
L LK + + +I + + Y+ GKTK+F R+GQ+A L+ R E L
Sbjct: 622 LAPEVLKGSSDDKAACKKILDKM------GLKGYQIGKTKVFLRAGQMAELDARRTEVL 674
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 351 bits (902), Expect = e-113
Identities = 148/363 (40%), Positives = 193/363 (53%), Gaps = 42/363 (11%)
Query: 24 QTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEW 83
+ FIGVLDI GFE FD N+FEQ CINY NEKLQQ FN H+F LEQEEY +EGIEW
Sbjct: 368 TKQQRAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEW 427
Query: 84 KFIDF-YDNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKP 141
FIDF D QP IDLIE +GIL LLDEEC PK +D ++ EKLY K K
Sbjct: 428 TFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLGKSKFKKPKK 487
Query: 142 RFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAA 201
F + H+A V Y+ G+LEKN+D + + + LL S++ K A
Sbjct: 488 GKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSD----KLVAELFKDYAE 543
Query: 202 LAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNA 261
+ K +TV ++E L+ LM TL ST PH++RCI PN+ K+ + +A
Sbjct: 544 ASGDGGGGGGKKKKGGSFRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDA 603
Query: 262 HRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRAC-GVLETIRISAAGFPSRWTYGE 320
H + QLR C GVLE IRI GFP+R Y E
Sbjct: 604 HLVLDQLR-----------------------------CNGVLEGIRICRKGFPNRILYAE 634
Query: 321 FYNRYRVLCGNL--KQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLE 378
F RY +L N K + + + E I+ S D ++Y+FG TK+FFR+G +A+LE
Sbjct: 635 FRQRYEILAPNAIPKGFMDS----KKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLE 690
Query: 379 KLR 381
++R
Sbjct: 691 EMR 693
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 296 bits (759), Expect = 4e-92
Identities = 132/370 (35%), Positives = 196/370 (52%), Gaps = 55/370 (14%)
Query: 18 NQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYL 77
N+ ++ ++ IGVLDIYGFE F N+FEQFCINY NEKLQQ F + K EQEEY+
Sbjct: 354 NKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYV 413
Query: 78 QEGIEWKFIDFYDNQPCIDLIESK--LGILDLLDEECK-MPKGSDTSWAEKLYTKCSDKW 134
+EGI+W I++++N+ DLIE K GI +LD+ C +G+D + K + K+
Sbjct: 414 REGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTD----QTFLEKLNKKF 469
Query: 135 SKHFVKPRF--GAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSST 192
S H F G+ F +KH+A DVTY GF +KN+DT++++ I L+ SS+N
Sbjct: 470 SSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPF----- 524
Query: 193 KSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPND 252
+ +L K+ SK+ T G + + S + L+ TL PHYIRCIKPN+
Sbjct: 525 ------LRSLFPEKSDA----DSKKRPTTAGFKIKTSANALVETLMKCTPHYIRCIKPNE 574
Query: 253 TKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGF 312
TK +F+ R + Q++ G+LE +R+ R AGF
Sbjct: 575 TKSPNDFDESRVLHQVKYLGLLENVRV----------RR------------------AGF 606
Query: 313 PSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSG 372
R T+ +F RY++L K + T E I+ D ++Y+ GKTKIF R+
Sbjct: 607 AYRQTFDKFLQRYKLLSP--KTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNP 664
Query: 373 Q-VAYLEKLR 381
+ + LE++R
Sbjct: 665 ETLFALEEMR 674
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 293 bits (751), Expect = 5e-91
Identities = 143/359 (39%), Positives = 188/359 (52%), Gaps = 52/359 (14%)
Query: 28 PSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFID 87
IGVLDI+GFE FD N+FEQ CIN+ANE LQQ F QH+FKLEQEEY E I W+ I+
Sbjct: 360 SRNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIE 419
Query: 88 FYDNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKP-RFGA 145
F DNQ +DLI K L I+ L+DEE K PKG+D + EKL++ +++KP
Sbjct: 420 FVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHS--QHGLHSNYLKPKSTQE 477
Query: 146 GSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAAS 205
F + HFA V YDT GFLEKNRDT + L+ SS N K + + +
Sbjct: 478 TQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKN-----------KFLKQIFQA 526
Query: 206 KTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTM 265
++ K K T+ SQFR SL LLMRTL+S P +IRCIKPN+ K
Sbjct: 527 DVEMGAETRKK--KPTLSSQFRRSLDLLMRTLSSCQPFFIRCIKPNEYKEP--------- 575
Query: 266 QQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRY 325
F+ ++QLR G++ETIRI AG+P R T+ EF RY
Sbjct: 576 -------------------MVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERY 616
Query: 326 RVL---CGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLR 381
RVL + + I E ++ + D ++ GKTK+F + LE+ R
Sbjct: 617 RVLVPGVKPAYKQDCLAGLAQRICEAVLLAD----DDWQLGKTKVFLKDHHDLLLEQER 671
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 287 bits (735), Expect = 1e-88
Identities = 147/353 (41%), Positives = 198/353 (56%), Gaps = 41/353 (11%)
Query: 30 RFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFY 89
R I +LDIYGFE+FD N+FEQFCINYANE+LQQ FN+H+FKLEQEEY ++GI+W ++F
Sbjct: 365 RSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFE 424
Query: 90 DNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSF 148
DNQ C+DL E K LG+L LLDEE P +D ++A KL + F R GA F
Sbjct: 425 DNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKT--NSCFRGERGGA--F 480
Query: 149 LVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTA 208
V+H+A +VTYDT GFLEKNRD ++ + I LL S + + A M +
Sbjct: 481 TVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSS----CKCQLPQLFASSMLIQSPVVGP 536
Query: 209 TLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQL 268
+S + K +VG++F+ L LM+ L +T PH+IRCIKPN+ +
Sbjct: 537 LYVASAADSQKLSVGTKFKGQLFKLMQQLENTTPHFIRCIKPNNKQL------------- 583
Query: 269 RACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVL 328
G +E +QQLR CGVLE +RIS +G+P+R T+ EF RY
Sbjct: 584 -------------PGIYEQGL--VLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRY--- 625
Query: 329 CGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLR 381
G L N A + I+ + Y+ G TK+FFR+GQ+ LE R
Sbjct: 626 -GFLLLENIASQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 232 bits (593), Expect = 6e-68
Identities = 127/345 (36%), Positives = 175/345 (50%), Gaps = 43/345 (12%)
Query: 31 FIGVLDIYGFETFDS-NNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFY 89
IGVLDI+GFE F N+FEQ CINYANE+LQ FNQH+FKLEQEEY EGI W I++
Sbjct: 377 SIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYT 436
Query: 90 DNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSF 148
DN CI L K G+L LLDEE P + + K + D +K++ P+ +F
Sbjct: 437 DNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKD--NKYYEGPQVKEPAF 494
Query: 149 LVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTA 208
+++H+A V Y F EKN D + ++ +ALL S SS M +A + A
Sbjct: 495 IIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSD-----SSYVRELIGMDPVAVFRWA 549
Query: 209 TLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQL 268
L ++ +V +QF+ SL+ LM TL P +IRCIK N K F+
Sbjct: 550 VLRAAFRAMAAPSVSAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDD------- 602
Query: 269 RACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVL 328
E + ++QLR G+LET+RI AG+ R+TY +F +YR+L
Sbjct: 603 ------ELV---------------LRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRIL 641
Query: 329 CGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQ 373
Q S E +++ D Y+ GKTKIF R +
Sbjct: 642 LPKGAQ------SCREDISTLLSKMKIDKRNYQIGKTKIFMRETE 680
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 217 bits (555), Expect = 7e-63
Identities = 119/351 (33%), Positives = 171/351 (48%), Gaps = 73/351 (20%)
Query: 32 IGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDN 91
+G+LDI+GFE F N+FEQ CIN ANE++Q FNQH+F EQ+EYL EG++ + +++ DN
Sbjct: 375 VGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDN 434
Query: 92 QPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLV 150
+P +D+ K LG+L LLDEE + P+ +D + EK SK F +P+ SF +
Sbjct: 435 RPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDNLK---SKFFWRPKRVELSFGI 491
Query: 151 KHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTATL 210
H+A V Y+ +GFLEKNRD + + + LL SS
Sbjct: 492 HHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS--------------------------- 524
Query: 211 PSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLRA 270
+TV S FR SL L+ + PH++RCIKPN+ ++A +F+A + ++QLR
Sbjct: 525 ---------QTVASYFRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRY 575
Query: 271 CGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLCG 330
G+LET RI +Q GF R + F RY L
Sbjct: 576 TGILETARIR-------------RQ---------------GFSHRILFANFIRRYCFLAY 607
Query: 331 NLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLR 381
S E I+ A D + GKTK+F + V L +R
Sbjct: 608 RF---EEEPVSSPESCALILEK--AKLDNWALGKTKVFLKYYHVEQLNLMR 653
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 216 bits (551), Expect = 3e-62
Identities = 123/356 (34%), Positives = 174/356 (48%), Gaps = 47/356 (13%)
Query: 32 IGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEWKFIDFYDN 91
I +LDIYGFE N+FEQ CINYANE LQ FN+ VF+ EQEEY++E ++W I F DN
Sbjct: 363 IAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADN 422
Query: 92 QPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRFGAGSFLV 150
QP I+LI K GIL +LD++C P+ +D ++ +K + + + KP+ F +
Sbjct: 423 QPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHY--HHGANPLYSKPKMPLPEFTI 480
Query: 151 KHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRMAALAASKTATL 210
KH+A VTY FL+KN D V ++ + L SS S AA A K
Sbjct: 481 KHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSS----HAAQRAPKRLGK 536
Query: 211 PSSKSKQHKK-TVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFEFNAHRTMQQLR 269
SS ++ +K TV ++F++SL L+ + P ++RC+KPN K
Sbjct: 537 SSSGTRLYKAHTVAAKFQQSLLDLVEKMERCNPLFVRCLKPNHKKEP------------- 583
Query: 270 ACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFYNRYRVLC 329
G FE + M QLR GVLET+RI GFP R + F +RYR L
Sbjct: 584 -------------GLFEPDV--VMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLV 628
Query: 330 GNLKQYNTAVHSMNEIGEHIVTSSIADC----DKYKFGKTKIFFRSGQVAYLEKLR 381
+ G+ V+ C Y+ G +K+F + LE +R
Sbjct: 629 -------ALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 214 bits (546), Expect = 4e-61
Identities = 133/387 (34%), Positives = 187/387 (48%), Gaps = 92/387 (23%)
Query: 18 NQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYL 77
NQ F+T+ S FIGVLDI GFE F+ N+FEQFCINY NEKLQQ FN+ + K EQE Y
Sbjct: 387 NQCFPFETS--SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQ 444
Query: 78 QEGIEWKFIDFYDNQPCIDLIESKL-GILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSK 136
+EG+ + + DNQ CIDLIE+KL GILD+LDEE ++P+ SD + ++ K
Sbjct: 445 REGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQPSDQHFTSVVH----QKHKD 500
Query: 137 HF-----VKPRFGAG-------SFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSST 184
HF K + F+++HFA V Y+T F+EKN D LH S
Sbjct: 501 HFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNND--------ALHMSL 552
Query: 185 NTSQQSSTKSGAKRMAALAASKTATLPSSKSKQHK---KTVGSQFRESLSLLMRTLNSTI 241
+ S K + +L S + +K K K +VG++F+ L+LL+ L ST
Sbjct: 553 ESLICESKD---KFLRSLFES-STNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTG 608
Query: 242 PHYIRCIKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGV 301
+IRCIKPN + +F + + QL+ G++ + + MQ
Sbjct: 609 SSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLDL-------------MQ------- 648
Query: 302 LETIRISAAGFPSRWTYGEFYNRY-------------RVLCGNLKQYNTAVHSMNEIGEH 348
GFPSR ++ E YN Y R+ C L ++
Sbjct: 649 --------GGFPSRASFHELYNMYKKYMPPKLVRLDPRLFCKAL------FKALG----- 689
Query: 349 IVTSSIADCDKYKFGKTKIFFRSGQVA 375
+ + YKFG TK+FFR G+ A
Sbjct: 690 ------LNENDYKFGLTKVFFRPGKFA 710
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 190 bits (485), Expect = 3e-52
Identities = 120/408 (29%), Positives = 190/408 (46%), Gaps = 60/408 (14%)
Query: 27 PPS---RFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEW 83
PP FIG+LDI+GFE F +N+ EQ IN NE LQ+ F VF+ E + Y EGI
Sbjct: 456 PPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGIST 515
Query: 84 KFIDFYDNQPCIDLIESKL-GILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKH-FVKP 141
+ +++ N+ IDL+ K +L +L+++C P G+D EK + C+ + KP
Sbjct: 516 EELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTD----EKFVSSCNTNLKNNPKYKP 571
Query: 142 --RFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKRM 199
+F++KH D+ Y +GFL KN+D + E + ++ +S N
Sbjct: 572 AKVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNP------------- 618
Query: 200 AALAASKTATLPSSKSKQHKKT-VGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFE 258
L + K K K +GSQF L LM +NST PH+IRCIKPN+ K+ +
Sbjct: 619 --LVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLMSLINSTEPHFIRCIKPNENKKPLD 676
Query: 259 FNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTY 318
+N+ + + QL + +LE + QLR GF R T+
Sbjct: 677 WNSSKVLIQLHSLSILEAL-----------------QLRQL-----------GFSYRRTF 708
Query: 319 GEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLE 378
EF ++++ L +L N + E E ++ S D Y GKT +F + L
Sbjct: 709 AEFLSQFKYL--DLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELT 766
Query: 379 KLRAEKLKR---CCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYL 423
+++ EKL V++ + ++K +KS+ +Q R +L
Sbjct: 767 QIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHL 814
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 91.8 bits (228), Expect = 2e-19
Identities = 108/427 (25%), Positives = 170/427 (39%), Gaps = 71/427 (16%)
Query: 5 NRNLSQSQSSSSSNQGAAFQTTPPSRFIGVLDIYGFETFDSN------NFEQFCINYANE 58
NR++S S S +S I ++D GF+ S FE+ C NY E
Sbjct: 362 NRSISSSHHSIAS--------------IMLVDTPGFQNPASQGKDRAATFEELCHNYLQE 407
Query: 59 KLQQQFNQHVFKLEQEEYLQEGIEWKF----------IDFYDNQPCIDLIESKL------ 102
+LQ F+ F E Y +EG+E +F + D P ++ + L
Sbjct: 408 RLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDAR 467
Query: 103 GILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRF----GAGSFLVKHF--ADD 156
G+L LLDEE +P SD ++ E+L+ D+ ++ R G F++ H +
Sbjct: 468 GLLWLLDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNP 527
Query: 157 VTYDTAGFLEKNRDTV-YEEQIALLHSST----NTSQQSSTKSGAKRMAALAASKTA--- 208
V YD G+L + + LL S N+ Q + A A +
Sbjct: 528 VLYDVTGWLRRAKPNPAALNAPQLLQDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQ 587
Query: 209 ----------TLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPN-DTKRAF 257
T SS + +K+ Q + + L+ TL + H++ C P + +A
Sbjct: 588 ALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLHFVHCYLPQHNGGKAM 647
Query: 258 EFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWT 317
A + QQ GV AA + QLR +LE R+ GFP
Sbjct: 648 ARTASPSPQQSEDNGV-------AAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVP 700
Query: 318 YGEFYNRYRVLCGNL-KQYNTAVHSMNEIG--EHIVTSSIADCDKYKFGKTKIFFRSGQV 374
GEF R+ +L L K+ A +E E I+ + D Y+ G +++FFR+G +
Sbjct: 701 LGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVL 760
Query: 375 AYLEKLR 381
+ LE R
Sbjct: 761 SRLEAQR 767
>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif. Short calmodulin-binding
motif containing conserved Ile and Gln residues.
Length = 23
Score = 33.8 bits (79), Expect = 0.006
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 480 RENRAALRIQTRVRGFLARRNY 501
R RAA+ IQ RG+LAR+ Y
Sbjct: 1 RLTRAAIIIQAAWRGYLARKRY 22
Score = 31.9 bits (74), Expect = 0.039
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 384 KLKRCCIVIQKNVRCFLVRKKY 405
+L R I+IQ R +L RK+Y
Sbjct: 1 RLTRAAIIIQAAWRGYLARKRY 22
Score = 28.8 bits (66), Expect = 0.49
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 432 RRTRAAVRIQSAVRAFIRRRQY 453
R TRAA+ IQ+A R ++ R++Y
Sbjct: 1 RLTRAAIIIQAAWRGYLARKRY 22
Score = 26.9 bits (61), Expect = 1.7
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Query: 502 EATRAKIVICQASIRRFLAKKRFK 525
TRA I+I QA+ R +LA+KR+K
Sbjct: 1 RLTRAAIII-QAAWRGYLARKRYK 23
Score = 26.1 bits (59), Expect = 3.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 410 KSVATLQRWTRGYLARR 426
++ +Q RGYLAR+
Sbjct: 4 RAAIIIQAAWRGYLARK 20
>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif. Calmodulin-binding
motif.
Length = 21
Score = 31.9 bits (74), Expect = 0.028
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 482 NRAALRIQTRVRGFLARRNYE 502
+AA++IQ RG+LAR+ Y+
Sbjct: 1 RKAAIKIQAAWRGYLARKRYK 21
Score = 29.2 bits (67), Expect = 0.33
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 434 TRAAVRIQSAVRAFIRRRQY 453
+AA++IQ+A R ++ R++Y
Sbjct: 1 RKAAIKIQAAWRGYLARKRY 20
Score = 28.1 bits (64), Expect = 0.66
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 386 KRCCIVIQKNVRCFLVRKKY 405
++ I IQ R +L RK+Y
Sbjct: 1 RKAAIKIQAAWRGYLARKRY 20
Score = 26.5 bits (60), Expect = 2.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 505 RAKIVICQASIRRFLAKKRFK 525
R + QA+ R +LA+KR+K
Sbjct: 1 RKAAIKIQAAWRGYLARKRYK 21
Score = 26.1 bits (59), Expect = 3.7
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 410 KSVATLQRWTRGYLARR 426
K+ +Q RGYLAR+
Sbjct: 2 KAAIKIQAAWRGYLARK 18
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 34.0 bits (78), Expect = 0.11
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 2 SNSNRNLSQSQSS-----SSSNQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQ 50
+ N + S+S S N A+ P I ++D+ G E D + E
Sbjct: 74 TAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEG 127
>gnl|CDD|213045 cd12098, DD_R_PKA_fungi, Dimerization/Docking domain of the
Regulatory subunit of fungal cAMP-dependent protein
kinase. cAMP-dependent protein kinase (PKA) is a
serine/threonine kinase (STK), catalyzing the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic subunits with a
dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active
subunits. The R subunit of fungal PKA is encoded by a
single gene, which is called by various names in
different organisms (for example: Yarrowia lipolytica
RKA1, Saccharomyces cerevisiae Bcy1, and
Schizosaccharomyces pombe Cgs1). Although most
characterized PKA holoenzymes are tetramers, Y.
lipolytica PKA has been reported to be a dimer of RKA1
and the catalytic subunit TPK1. RKA1 is essential and
promotes hyphal growth. Cgs1 is essential for sexual
differentiation of S. pombe; mutants with defective
Cgs1 are partially sterile. The R subunit contains an
N-terminal dimerization/docking (D/D) domain, a linker
with an inhibitory sequence, and two c-AMP binding
domains. The D/D domain of metazoan R subunits
dimerizes to form a four-helix bundle that serves as a
docking site for A-kinase-anchoring proteins (AKAPs).
The D/D domain of fungal R subunits may also serve as a
dimerization domain, in the case of heterotetrameric
PKAs. Fungal PKA plays a major role in controlling cell
growth and metabolism in response to nutrients and
stress conditions.
Length = 38
Score = 28.4 bits (64), Expect = 0.76
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 46 NNFEQFCINYANEKLQQQ 63
+ QFC NY N++L+QQ
Sbjct: 20 TDILQFCANYFNKRLEQQ 37
>gnl|CDD|177659 PLN00021, PLN00021, chlorophyllase.
Length = 313
Score = 30.8 bits (70), Expect = 1.9
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 16/77 (20%)
Query: 87 DFYDN--QPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKP--R 142
+F++ P + + G +D+LD++ +G T C + + KP R
Sbjct: 220 EFFNECKAPAVHFVAKDYGHMDMLDDDTSGIRGKIT------GCMCKNGKPR---KPMRR 270
Query: 143 FGAG---SFLVKHFADD 156
F G +FL + D
Sbjct: 271 FVGGAVVAFLKAYLEGD 287
>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional.
Length = 679
Score = 30.2 bits (68), Expect = 3.9
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 18/113 (15%)
Query: 252 DTKRAFEFNAHRTMQQLRACG-VLETIRISAAGQFEFNAHRTMQQLRACG---VLETIRI 307
+ +F FN + + +CG V+E +RI+A F T Q ++ T+R+
Sbjct: 363 EADVSF-FNVRQ-TASIISCGAVMENMRIAATT---FGLDATTQYRPDAAQEDLMATVRL 417
Query: 308 SAAGFP---------SRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVT 351
R T + Y++ + L T + S+ H +T
Sbjct: 418 QPGDHTKDPLADHIWKRCTNRKPYSKRPLPEWVLNDLKTRIRSIPGAHLHFIT 470
>gnl|CDD|218715 pfam05719, GPP34, Golgi phosphoprotein 3 (GPP34). This family
consists of several eukaryotic GPP34 like proteins.
GPP34 localises to the Golgi complex and is conserved
from yeast to humans. The cytosolic-ally exposed
location of GPP34 predict a role for a novel coat
protein in Golgi trafficking.
Length = 205
Score = 29.2 bits (66), Expect = 4.3
Identities = 18/101 (17%), Positives = 32/101 (31%), Gaps = 15/101 (14%)
Query: 423 LARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVR----- 477
L + +R ++ + R R+ A GL ARG+L R + R
Sbjct: 60 LLDEALAELRGASRPRSVKDWLERLSGRGLRERVAA---GL--VARGILRREKRRFLGLF 114
Query: 478 -----RVRENRAALRIQTRVRGFLARRNYEATRAKIVICQA 513
+ + A ++ R+R L R +
Sbjct: 115 PTTRYPLVDPAAEAALRARLRAALRGGAPPDPRTAALAALL 155
>gnl|CDD|204544 pfam10712, NAD-GH, NAD-specific glutamate dehydrogenase. The
members of this are annotated as being NAD-specific
glutamate dehydrogenase encoded in antisense gene pair
with DnaK-J. However, this could not be confirmed.
Length = 574
Score = 29.6 bits (67), Expect = 5.4
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 424 ARRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVR 480
A +L + + RTR + V + R + L L LQ +G LV +V V
Sbjct: 278 AGQLHVEVLRTRVVGGDERQVDFGLLRGRQLDLGLFGRFLQ-TLQGQLVLAQVDAVL 333
>gnl|CDD|203570 pfam07058, Myosin_HC-like, Myosin II heavy chain-like. This family
represents a conserved region within a number of myosin
II heavy chain-like proteins that seem to be specific to
Arabidopsis thaliana.
Length = 351
Score = 29.2 bits (65), Expect = 5.5
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 182 SSTNTSQQSSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLS 231
T+ S +G R +L ++T+ +S KK SQ R SL+
Sbjct: 166 FVRPTTVGRSESNGPTRRQSLGGAETSPKFTSNGGLSKKRPSSQLRGSLT 215
>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional.
Length = 856
Score = 29.5 bits (67), Expect = 6.1
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 466 AARGMLVRREVRRVRENRAAL-RIQTRVRGFLARR 499
A RG++ RE R++R N L ++ R+ LA R
Sbjct: 222 AKRGLITDREARQLRRNERFLKTLRARLH-LLAGR 255
>gnl|CDD|234425 TIGR03974, rSAM_six_Cys, SCIFF radical SAM maturase. Members of
this protein family are predicted radical SAM enzymes
universally associated with Six Cysteines in Forty-Five
protein, or SCIFF (family TIGR03973), a predicted
ribosomal natural product precursor that is nearly
universal in the class Clostridia. Similarity of this
family to radical SAM maturases (PqqE and subtilosin A
maturase) found in the vicinity of other peptide
precursors suggests this protein is the SCIFF radical
SAM maturase [Cellular processes, Biosynthesis of
natural products].
Length = 451
Score = 29.1 bits (66), Expect = 7.0
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 152 HFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQ 189
H DDVTYD E+ +D E+I + +
Sbjct: 21 HVVDDVTYDVIALYEEGKDKETPEEIKEKLKGKYSEED 58
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 28.9 bits (65), Expect = 8.2
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 182 SSTNTSQQSSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTI 241
S +++ K+ SK + K K+ KK S+ L +
Sbjct: 43 SEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKT 102
Query: 242 PHYIRCIKPNDTKRAFEFNAHRTMQQLRA-CGVLETIRISAAG 283
KPN+ NA + +L V +SA+G
Sbjct: 103 KKKPPKPKPNEDV----DNAFNKIAELAEKSNVYIGAHVSASG 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.133 0.388
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,094,548
Number of extensions: 2759858
Number of successful extensions: 2773
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2697
Number of HSP's successfully gapped: 66
Length of query: 560
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 458
Effective length of database: 6,413,494
Effective search space: 2937380252
Effective search space used: 2937380252
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (27.5 bits)