RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10328
(560 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 672 bits (1737), Expect = 0.0
Identities = 283/549 (51%), Positives = 354/549 (64%), Gaps = 47/549 (8%)
Query: 24 QTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEW 83
T FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFN HVFKLEQEEY++E I W
Sbjct: 425 STVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPW 484
Query: 84 KFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRF 143
IDFYDNQPCI+LIE+K+G+LDLLDEECKMPKGSD +WA+KLY +K F KPR
Sbjct: 485 TLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNK-CALFEKPRL 543
Query: 144 GAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTN--------------TSQQ 189
+F++KHFAD V Y GFLEKN+DTVYEEQI +L SS S
Sbjct: 544 SNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603
Query: 190 SSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIK 249
S+T SG ++ P SK+HKKTVG QFR SL LLM TLN+T PHY+RCIK
Sbjct: 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIK 663
Query: 250 PNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISA 309
PND K F F+ R +QQLRACGVLETIRISA
Sbjct: 664 PNDFKFP----------------------------FTFDEKRAVQQLRACGVLETIRISA 695
Query: 310 AGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFF 369
AGFPSRWTY EF++RYRVL + + ++++ I D DKY+FGKTKIFF
Sbjct: 696 AGFPSRWTYQEFFSRYRVLMKQKDVLS----DRKQTCKNVLEKLILDKDKYQFGKTKIFF 751
Query: 370 RSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVL 429
R+GQVAYLEK+RA+KL+ CI IQK +R +L+RKKY+ + ++ T+QR+ RG+ AR
Sbjct: 752 RAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT 811
Query: 430 HMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAALRIQ 489
+RRTRAA+ IQ R ++ R++Y +R + LQ RG LVR + + + ++ IQ
Sbjct: 812 FLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQ 871
Query: 490 TRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKII 549
VRG+LAR +Y T IV Q RR +AK+ KK+K EARSVE KKL+ GLENKI+
Sbjct: 872 KHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 550 SMQQRIGDL 558
+Q++I +
Sbjct: 932 QLQRKIDEQ 940
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 585 bits (1511), Expect = 0.0
Identities = 155/556 (27%), Positives = 242/556 (43%), Gaps = 58/556 (10%)
Query: 18 NQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYL 77
N+ + F+G+LDI GFE F N+FEQ CINY NEKLQQ FN +F LEQEEY
Sbjct: 415 NRALDRSPRQGASFLGILDIAGFEIFQLNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQ 474
Query: 78 QEGIEWKFIDF-YDNQPCIDLIESK---LGILDLLDEECKMPKGSDTSWAEKLYTKCSDK 133
+EGI W F+DF D QPCIDLIE G+L LLDEEC PK +D S+ EK+ +
Sbjct: 475 REGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKATDKSFVEKVAQEQGG- 533
Query: 134 WSKHFVKPRF--GAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNT--SQQ 189
F +PR F V H+A V Y +L KN D + + ALLH ST+ ++
Sbjct: 534 -HPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDPLNDNVAALLHQSTDRLTAEI 592
Query: 190 SSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIK 249
G + +++ + +TVG ++ESLS LM TL++T P ++RCI
Sbjct: 593 WKDVEGIVGLEQVSSLGDGPPGGRPRRGMFRTVGQLYKESLSRLMATLSNTNPSFVRCIV 652
Query: 250 PNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISA 309
PN KRA + VL QLR GVLE IRI
Sbjct: 653 PNHEKRAGKLEPRL---------VL-------------------DQLRCNGVLEGIRICR 684
Query: 310 AGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFF 369
GFP+R + EF RY +L N + E ++ + D + Y+ G++KIFF
Sbjct: 685 QGFPNRILFQEFRQRYEILTPN--AIPKGFMDGKQACEKMIQALELDPNLYRVGQSKIFF 742
Query: 370 RSGQVAYLEKLRAEKLKRCCIVIQKN--VRCFLVRKKYLSILK---SVATLQRWTRGYLA 424
R+G +A LE+ RA + + + + N V+ ++ L S+ ++Q + +
Sbjct: 743 RAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKE 802
Query: 425 RRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRA 484
+ + + +++ + + + ++ + + +
Sbjct: 803 YKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREP-----------FVAPAGLTPNEIDST 851
Query: 485 ALRIQTRVRGFLARRNYEATRAK--IVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNK 542
++ + E R K V+ Q R + + K
Sbjct: 852 WSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSIT 911
Query: 543 GLENKIISMQQRIGDL 558
++ K+ +++ G+
Sbjct: 912 AVQAKLKNLEAFDGEC 927
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 565 bits (1459), Expect = 0.0
Identities = 151/577 (26%), Positives = 254/577 (44%), Gaps = 83/577 (14%)
Query: 21 AAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEG 80
+ + FIGVLDI GFE F N+FEQ CINY NEKLQQ FN H+FK+EQEEYL+E
Sbjct: 439 NVLCSERKAYFIGVLDISGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEK 498
Query: 81 IEWKFIDF-YDNQPCIDLIESK--LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKH 137
I W FIDF D+Q IDLI+ + GIL LLDE+ P +D + KL++ S K +
Sbjct: 499 INWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKK-NAK 557
Query: 138 FVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAK 197
+ +PRF F V H+A V Y+ +LEKN+D + ++ S++
Sbjct: 558 YEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSD-----------N 606
Query: 198 RMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAF 257
+ L +K + TV +Q++E L+ LM TL +T PH++RCI PN+ +
Sbjct: 607 VVTKLFNDPNIA-SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLP- 664
Query: 258 EFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWT 317
+ + QLR GVLE IRI+ GFP+R
Sbjct: 665 ---------------------------AKLEDKVVLDQLRCNGVLEGIRITRKGFPNRII 697
Query: 318 YGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYL 377
Y +F RY +L N+ + + + ++ D ++Y+FG TKIFFR+GQ+A +
Sbjct: 698 YADFVKRYYLLAPNVPRDAE---DSQKATDAVLKHLNIDPEQYRFGITKIFFRAGQLARI 754
Query: 378 EKLRAEKLKRCCIVIQKNVRCFLVRK---------KYLSILKSVATLQRWTRGYLARRLV 428
E+ R ++L R + + + S+ ++Q + + +
Sbjct: 755 EEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKT 814
Query: 429 LHMRRTRAAVRIQSAVRAFIRRRQYLR--------------LRALVLGLQCAARGMLVRR 474
+ + +++ + + + ++ + + L+ A +
Sbjct: 815 EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874
Query: 475 EVRRVRENRAALRIQTRVRGFLARRNYEATR----------AKIVICQASIRRFLAK-KR 523
+ R+ + A+ +Q R N+ T+ I QA ++ A
Sbjct: 875 RIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934
Query: 524 FKKMKKEARS--VEHVKKLNKGLENKIISMQQRIGDL 558
+ ++ ++ S + + +L + N + + +R
Sbjct: 935 CQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTF 971
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 565 bits (1458), Expect = 0.0
Identities = 159/554 (28%), Positives = 253/554 (45%), Gaps = 45/554 (8%)
Query: 18 NQGAAFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYL 77
N+ + F+G+LDI GFE F+ N+FEQ CINY NEKLQQ FN +F LEQEEY
Sbjct: 446 NKALDKTKRQGASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQ 505
Query: 78 QEGIEWKFIDF-YDNQPCIDLIESKL---GILDLLDEECKMPKGSDTSWAEKLYTKCSDK 133
+EGIEW FIDF D QPCI+LIE G+L LLDEEC PK +DTS+ EKL + +
Sbjct: 506 REGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKATDTSFVEKLIQEQGN- 564
Query: 134 WSKHFVKPR--FGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNT--SQ- 188
F K + F + H+A VTY+ + +L KN D + + +LL+ S++ +
Sbjct: 565 -HAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDPLNDNVTSLLNQSSDKFVADL 623
Query: 189 -QSSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRC 247
+ + A + S K +TVG ++E L+ LM TL +T P+++RC
Sbjct: 624 WKDVDRIVGLDQMAKMTESSLPSASKTKKGMFRTVGQLYKEQLTKLMTTLRNTNPNFVRC 683
Query: 248 IKPNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRI 307
I PN KRA + +AH VL +QLR GVLE IRI
Sbjct: 684 IIPNHEKRAGKLDAHL---------VL-------------------EQLRCNGVLEGIRI 715
Query: 308 SAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKI 367
GFP+R + EF RY +L N + ++ + D + Y+ G++KI
Sbjct: 716 CRQGFPNRIVFQEFRQRYEILAANAI--PKGFMDGKQACILMIKALELDPNLYRIGQSKI 773
Query: 368 FFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SVATLQRWTRGYLA 424
FFR+G +A+LE+ R K+ I Q R +L RK + + S+ +Q R ++
Sbjct: 774 FFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMN 833
Query: 425 RRLVLHMRRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRA 484
M + R + Q A L E + +
Sbjct: 834 VXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEE 893
Query: 485 ALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGL 544
+Q +++ + + + + ++++E + ++ K +
Sbjct: 894 KNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953
Query: 545 ENKIISMQQRIGDL 558
+ +++ +++++ +
Sbjct: 954 QQQMLDLEEQLEEE 967
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 543 bits (1400), Expect = 0.0
Identities = 221/404 (54%), Positives = 264/404 (65%), Gaps = 47/404 (11%)
Query: 24 QTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEW 83
T FIGVLDIYGFETF+ N+FEQFCINYANEKLQQQFN HVFKLEQEEY++E I W
Sbjct: 425 STVKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPW 484
Query: 84 KFIDFYDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPRF 143
IDFYDNQPCI+LIE+K+G+LDLLDEECKMPKGSD +WA+KLY +K F KPR
Sbjct: 485 TLIDFYDNQPCINLIEAKMGVLDLLDEECKMPKGSDDTWAQKLYNTHLNK-CALFEKPRL 543
Query: 144 GAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTN--------------TSQQ 189
+F++KHFAD V Y GFLEKN+DTVYEEQI +L SS S
Sbjct: 544 SNKAFIIKHFADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPT 603
Query: 190 SSTKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIK 249
S+T SG ++ P SK+HKKTVG QFR SL LLM TLN+T PHY+RCIK
Sbjct: 604 SATPSGRVPLSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIK 663
Query: 250 PNDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISA 309
PND K F F+ R +QQLRACGVLETIRISA
Sbjct: 664 PNDFKFP----------------------------FTFDEKRAVQQLRACGVLETIRISA 695
Query: 310 AGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFF 369
AGFPSRWTY EF++RYRVL + + ++++ I D DKY+FGKTKIFF
Sbjct: 696 AGFPSRWTYQEFFSRYRVLMKQKDVLS----DRKQTCKNVLEKLILDKDKYQFGKTKIFF 751
Query: 370 RSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVA 413
R+GQVAYLEK+RA+KL+ CI IQK +R +L+RKKY+ + + A
Sbjct: 752 RAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRGDA 795
Score = 37.6 bits (88), Expect = 0.011
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 475 EVRRVRENRAALRIQTRVRGFLARRNYEATR 505
++R + A +RIQ +RG+L R+ Y R
Sbjct: 761 KIRADKLRAACIRIQKTIRGWLMRKKYMRMR 791
Score = 34.5 bits (80), Expect = 0.11
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 505 RAKIVICQASIRRFLAKKRFKKMKKEA 531
RA + Q +IR +L +K++ +M++
Sbjct: 768 RAACIRIQKTIRGWLMRKKYMRMRRGD 794
Score = 29.1 bits (66), Expect = 5.2
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 455 RLRALVLGLQCAARGMLVRREVRRVRENRAA 485
+LRA + +Q RG L+R++ R+R R
Sbjct: 766 KLRAACIRIQKTIRGWLMRKKYMRMR--RGD 794
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 517 bits (1334), Expect = e-176
Identities = 153/420 (36%), Positives = 212/420 (50%), Gaps = 48/420 (11%)
Query: 23 FQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIE 82
+ +IGVLDI GFE FD N+FEQ CINY NE+LQQ FN H+F LEQEEY +EGI
Sbjct: 447 DTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIA 506
Query: 83 WKFIDF-YDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKP 141
W+FIDF D Q CIDLIE +GIL +L+EEC PK D S+ +KLY K ++ F KP
Sbjct: 507 WEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKADDKSFQDKLYQNHMGK-NRMFTKP 565
Query: 142 ------RFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSG 195
G F + H+A +V Y G+LEKN+D + E +ALL +S
Sbjct: 566 GKPTRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKE-------PLV 618
Query: 196 AKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKR 255
A+ A +T+ + RESL+ LM+ L ST PH++RCI PN+ K+
Sbjct: 619 AELFKAPEEPAGGGKKKKGKSSAFQTISAVHRESLNKLMKNLYSTHPHFVRCIIPNELKQ 678
Query: 256 AFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSR 315
+A + QL+ GVLE IRI GFPSR
Sbjct: 679 P----------------------------GLVDAELVLHQLQCNGVLEGIRICRKGFPSR 710
Query: 316 WTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVA 375
Y EF RY +L N + E I+ D +Y+ G TK+FF++G +
Sbjct: 711 LIYSEFKQRYSILAPN--AIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLG 768
Query: 376 YLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SVATLQRWTRGYLARRLVLHMR 432
LE++R E+L + + Q ++R +L+RK Y + ++ +QR R +L R +
Sbjct: 769 NLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWK 828
Score = 56.6 bits (137), Expect = 1e-08
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 475 EVRRVRENRAALRIQTRVRGFLARRNYEATRAK---IVICQASIRRFLAKKRFKKMK 528
E+R R ++ Q +RG+L R+ Y+ + + + + Q +IR++L + ++ K
Sbjct: 772 EMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWK 828
Score = 35.4 bits (82), Expect = 0.057
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 505 RAKIVICQASIRRFLAKKRFKKMKKEARSV 534
I + QA IR +L +K +KK++ + +
Sbjct: 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGL 808
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 502 bits (1296), Expect = e-171
Identities = 121/390 (31%), Positives = 186/390 (47%), Gaps = 54/390 (13%)
Query: 22 AFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGI 81
F S FIGVLDI GFE F+ N+FEQFCINY NEKLQQ FN+ + K EQE Y +EG+
Sbjct: 438 CFPFETSSYFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGL 497
Query: 82 EWKFIDFYDNQPCIDLIESKL-GILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVK 140
+ + DNQ CIDLIE++L GILD+LDEE ++P+ SD + ++ K D
Sbjct: 498 GVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQPSDQHFTSAVHQKHKD--HFRLSI 555
Query: 141 PRFGAGS----------FLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQS 190
PR + F+++HFA V Y+T F+EKN D ++ +L+ S +
Sbjct: 556 PRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICESRD----- 610
Query: 191 STKSGAKRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKP 250
+ + + + K +VG++F+ L+LL+ L ST +IRCIKP
Sbjct: 611 ---KFIRELFESSTNNNKDTKQKAGKLSFISVGNKFKTQLNLLLDKLRSTGASFIRCIKP 667
Query: 251 NDTKRAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAA 310
N + F + +L QL+ G++ + +
Sbjct: 668 NLKMTSHHFEGAQ---------IL-------------------SQLQCSGMVSVLDLMQG 699
Query: 311 GFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFR 370
GFPSR ++ E YN Y+ + A + + + + YKFG TK+FFR
Sbjct: 700 GFPSRASFHELYNMYKKYMPD----KLARLDPRLFCKALFKALGLNEIDYKFGLTKVFFR 755
Query: 371 SGQVAYLEKLRAEKLKRCCIVIQKNVRCFL 400
G+ A +++ ++++ V +L
Sbjct: 756 PGKFAEFDQIMKSDPDHLAELVKR-VNHWL 784
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 495 bits (1277), Expect = e-168
Identities = 134/369 (36%), Positives = 190/369 (51%), Gaps = 47/369 (12%)
Query: 22 AFQTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGI 81
+ FIGVLDIYGFE F N+FEQ CINY NEKLQQ FN H+FKLEQEEYL+E I
Sbjct: 440 VLCQERKAYFIGVLDIYGFEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKI 499
Query: 82 EWKFIDF-YDNQPCIDLIESK--LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHF 138
W FIDF D+Q IDLI+ + GIL LLDE+ P +D + KL++ S K + +
Sbjct: 500 NWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKK-NAKY 558
Query: 139 VKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKR 198
+PRF F V H+A V Y+ +LEKN+D + ++ S++
Sbjct: 559 EEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSD-----------NV 607
Query: 199 MAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFE 258
+ L +K + TV +Q++E L+ LM TL +T PH++RCI PN+ + +
Sbjct: 608 VTKLFNDPNIA-SRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAK 666
Query: 259 FNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTY 318
VL QLR GVLE IRI+ GFP+R Y
Sbjct: 667 LEDKV---------VL-------------------DQLRCNGVLEGIRITRKGFPNRIIY 698
Query: 319 GEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLE 378
+F RY +L N+ + + + ++ D ++++FG TKIFFR+GQ+A +E
Sbjct: 699 ADFVKRYYLLAPNVPRDAE---DSQKATDAVLKHLNIDPEQFRFGITKIFFRAGQLARIE 755
Query: 379 KLRAEKLKR 387
+ R +
Sbjct: 756 EARELRGDY 764
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 490 bits (1263), Expect = e-166
Identities = 146/369 (39%), Positives = 194/369 (52%), Gaps = 39/369 (10%)
Query: 24 QTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEW 83
P FIGVLDI GFE FD N+FEQ CIN+ NEKLQQ FN H+F LEQEEY +EGIEW
Sbjct: 449 TKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEW 508
Query: 84 KFIDF-YDNQPCIDLIESKLGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKPR 142
FIDF D Q CIDLIE +GI+ +L+EEC PK +D ++ KL+ K S +F KPR
Sbjct: 509 TFIDFGMDLQACIDLIEKPMGIMSILEEECMFPKATDMTFKAKLFDNHLGK-SANFQKPR 567
Query: 143 FGAG----SFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGAKR 198
G F + H+A V Y+ G+L+KN+D + E + L S+ +
Sbjct: 568 NIKGKPEAHFSLIHYAGIVDYNIIGWLQKNKDPLNETVVGLYQKSSL----KLLSTLFAN 623
Query: 199 MAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRAFE 258
A A +K +TV + RE+L+ LM L ST PH++RCI PN+TK
Sbjct: 624 YAGADAPIEKGKGKAKKGSSFQTVSALHRENLNKLMTNLRSTHPHFVRCIIPNETKSP-- 681
Query: 259 FNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTY 318
+ M QLR GVLE IRI GFP+R Y
Sbjct: 682 --------------------------GVMDNPLVMHQLRCNGVLEGIRICRKGFPNRILY 715
Query: 319 GEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLE 378
G+F RYR+L + E +++S D ++YKFG TK+FF++G + LE
Sbjct: 716 GDFRQRYRILNPA-AIPEGQFIDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLE 774
Query: 379 KLRAEKLKR 387
++R E+L R
Sbjct: 775 EMRDERLSR 783
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 483 bits (1246), Expect = e-164
Identities = 129/371 (34%), Positives = 193/371 (52%), Gaps = 57/371 (15%)
Query: 24 QTTPPSRFIGVLDIYGFETFDSNNFEQFCINYANEKLQQQFNQHVFKLEQEEYLQEGIEW 83
TT IG+LDIYGFE F +N+FEQ IN+ NEKLQQ F + K EQEEY++EGIEW
Sbjct: 374 CTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEW 433
Query: 84 KFIDFYDNQPCIDLIESK-LGILDLLDEECKMPKGSDTSWAEKLYTKCSDKWSKHFVKP- 141
K I++++N+P +LIE K +G++ LLDE C + K +D ++ + + + + H
Sbjct: 434 KNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFEK--NPHLQSYV 491
Query: 142 -----RFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKSGA 196
G F +KH+A DVTYD GFL+KN+DT++ + I+ + SS++
Sbjct: 492 VSKDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSD----------- 540
Query: 197 KRMAALAASKTATLPSSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHYIRCIKPNDTKRA 256
L SK+ +T GSQFR +++ L+ TL + PHY+RCIK ND K+A
Sbjct: 541 ----PLVQGLFPPTRPEDSKKRPETAGSQFRNAMNALITTLLACSPHYVRCIKSNDNKQA 596
Query: 257 FEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRW 316
+ R V Q+R G+LE +R+ AGF R
Sbjct: 597 GVIDEDR---------VR-------------------HQVRYLGLLENVRVRRAGFAGRI 628
Query: 317 TYGEFYNRYRVLCGN-LKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRS-GQV 374
Y FYNRY++LC +N + + E I+ D ++ + GKTK+F R+ +
Sbjct: 629 EYTRFYNRYKMLCKKTWPSFNG---TAKQATELILQQHNIDKEEIRMGKTKVFIRNPTTL 685
Query: 375 AYLEKLRAEKL 385
Y E+ R ++
Sbjct: 686 FYFEEKRELEM 696
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ motif,
acetylation; 2.5A {Mus musculus}
Length = 58
Score = 76.4 bits (189), Expect = 8e-18
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 382 AEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAV 438
A+KL+ CI IQK +R +L+RK+YL + ++ T+QR+ RGY AR +RRT+AA
Sbjct: 1 ADKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAAT 57
Score = 64.1 bits (157), Expect = 2e-13
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 432 RRTRAAVRIQSAVRAFIRRRQYLRLRALVLGLQCAARGMLVRREVRRVRENRAA 485
+ A +RIQ +R ++ R++YL ++ + +Q RG R + +R +AA
Sbjct: 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKAA 56
Score = 56.8 bits (138), Expect = 6e-11
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 480 RENRAALRIQTRVRGFLARRNYEATRAKIVICQASIRRFLAKKRFKKMKKEA 531
+ A +RIQ +RG+L R+ Y + + Q +R + A+ K +++
Sbjct: 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTK 54
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.9 bits (152), Expect = 2e-10
Identities = 64/497 (12%), Positives = 131/497 (26%), Gaps = 152/497 (30%)
Query: 57 NEKLQQQFNQHVF------------KLEQEEYLQEGIEWKF---IDFYDNQPCIDLIESK 101
+ K+Q + + +F LE + L I+ + D N + + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQ 231
Query: 102 LGILDLLDEECKMPKGSDTSWAEKLYTKC----SDKWSKHFVKPRFGAGS-FLV----KH 152
+ LL K Y C + + F L+ K
Sbjct: 232 AELRRLL--------------KSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQ 276
Query: 153 FADDVTYDTAG--FLEKNRDTVYEEQ-IALLHSSTNTSQQSSTKSGAKRMAALAASKTAT 209
D ++ T L+ + T+ ++ +LL + Q L T
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-----------LPREVLTT 325
Query: 210 LPSSKSKQHKKTVGSQFRESLS-------LLMRTLNSTIPHYIRCIKPNDTKRAFEFNAH 262
P + + R+ L+ + L + I + ++P + ++ F+
Sbjct: 326 NP-----RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD---- 376
Query: 263 RTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPSRWTYGEFY 322
V F +AH +L I W
Sbjct: 377 -------RLSV-----------FPPSAHIPTI------LLSLI----------WFDVIKS 402
Query: 323 NRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRA 382
+ + + + S+ + + I S + KL
Sbjct: 403 D------------------VMVVVNKLHKYSLVEKQPKES---TISIPSIYLELKVKLEN 441
Query: 383 EKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVRIQS 442
E + V + + K + S + + Y + H++ R+
Sbjct: 442 EYALH-----RSIVDHYNIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 443 AVRAFIRRRQYLRLRAL-----VLGLQCAARGML------VRREVRRVRENRAAL-RIQT 490
F R +L R L A G + ++ + +N R+
Sbjct: 493 ----F--RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 491 RVRGFLARRNYEATRAK 507
+ FL + +K
Sbjct: 547 AILDFLPKIEENLICSK 563
Score = 44.8 bits (105), Expect = 7e-05
Identities = 37/277 (13%), Positives = 76/277 (27%), Gaps = 61/277 (22%)
Query: 323 NRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDK--YKFGKTKIFFRSGQVAYLEKL 380
+ L L E +V + + + YKF + I Q + + ++
Sbjct: 62 SGTLRLFWTLLSK----------QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 381 RAEKLKRCCIVIQKNVRCFLVR-KKYLSILKSVATLQRWTRGYLARRLVLH-MR------ 432
E+ R Q + + R + YL + +++ L+ A+ +++ +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP------AKNVLIDGVLGSGKTW 165
Query: 433 RTRAAVRIQSAVRAF------IRRRQYLRLRALVLGLQ--CA-ARGMLVRREVRRVRENR 483
+ + ++ LQ R
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 484 AALRIQTRVRGFLARRNYEATRAKIVI---------------CQ-------ASIRRFLAK 521
IQ +R L + YE +V+ C+ + FL+
Sbjct: 226 RIHSIQAELRRLLKSKPYE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 522 KRFKKMKKEARSVEHVKKLNKGLENKIISMQQRIGDL 558
+ + S+ K L K + R DL
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDL 318
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 41.2 bits (97), Expect = 2e-05
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 455 RLRALVLGLQCAARGMLVRREVRRVRENRAALR-IQTRVRGFLARRNYE 502
R+ +V +Q AARG + R+ R+ RE + R IQ +R +L +N+
Sbjct: 2 RIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWA 50
Score = 35.1 bits (81), Expect = 0.004
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 408 ILKSVATLQRWTRGYLARRLVLHMRRTRAAVR-IQSAVRAFIRRRQY 453
I + V +Q RG++ R+ R + R IQ +RA++ + +
Sbjct: 3 IGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNW 49
Score = 32.8 bits (75), Expect = 0.023
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 487 RIQTRVRGFLARRNYE---ATRAKIVICQASIRRFLAKKRFKKMK 528
+Q RG++ R+++ I Q +IR +L K + K
Sbjct: 9 VVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKNWAWWK 53
Score = 30.1 bits (68), Expect = 0.25
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 383 EKLKRCCIVIQKNVRCFLVRKKYLSILK---SVATLQRWTRGYLARR 426
++ V+Q R ++ RK + + S +Q R YL +
Sbjct: 1 RRIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47
Score = 27.4 bits (61), Expect = 2.1
Identities = 6/27 (22%), Positives = 18/27 (66%)
Query: 508 IVICQASIRRFLAKKRFKKMKKEARSV 534
+ + QA+ R ++ +K F++ ++++ S
Sbjct: 7 VKVVQAAARGWVERKHFRQAREKSVSA 33
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 38.6 bits (90), Expect = 2e-04
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 455 RLRALVLGLQCAARGMLVRREVRRVRENRAALR-IQTRVRGFLARRN 500
RL ++ Q RG L+R+ +++++ R L IQ +R +L RN
Sbjct: 4 RLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50
Score = 33.6 bits (77), Expect = 0.013
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 402 RKKYLSILKSVATLQRWTRGYLARRLVLHMRRTRAAVR-IQSAVRAFIRRRQ 452
R + LS + ++ Q RGYL R+ ++ R + IQ +R ++ R
Sbjct: 1 RDERLSKI--ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50
Score = 31.7 bits (72), Expect = 0.071
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 487 RIQTRVRGFLARRNYEATRAK---IVICQASIRRFLAKKRFKKMK 528
Q +RG+L R+ Y+ + + + + Q +IR++L + ++ K
Sbjct: 11 MFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNWQWWK 55
Score = 30.5 bits (69), Expect = 0.20
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 381 RAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SVATLQRWTRGYLARR 426
R E+L + + Q ++R +L+RK Y + ++ +QR R +L R
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49
Score = 27.4 bits (61), Expect = 2.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 508 IVICQASIRRFLAKKRFKKMKKEARSV 534
I + QA IR +L +K +KK++ + +
Sbjct: 9 ISMFQAHIRGYLIRKAYKKLQDQRIGL 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.004
Identities = 73/473 (15%), Positives = 137/473 (28%), Gaps = 164/473 (34%)
Query: 177 IALLHSSTNTSQQSSTKSG--AKRM----AALAASKTATL-----PSSK----------- 214
+ L H S T S A ++ + T P++
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV 68
Query: 215 SKQHKKTVGSQFRESLSLLMRTLNSTI-----PHYI--RCIKPNDTK--------RAFEF 259
S + + QF + L+L + + H + + ++ NDT + +
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-I 127
Query: 260 NAHRTMQQ----------LRACGVLETIRISAA--GQFEFNAHRTMQQLRACGVLETIRI 307
A ++ RA G ++ A GQ N ++LR
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGE-GNAQLVAIFGGQG--NTDDYFEELR---------- 174
Query: 308 SAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTKI 367
+ Y Y VL G+L + E ++ ++ D +K
Sbjct: 175 ------------DLYQTYHVLVGDL------IKFSAETLSELIRTT-LDAEKV------- 208
Query: 368 FFRSGQ--VAYLEKLRA----EKLKRCCI------VIQKNVRCFLVRKKYLSILKSVATL 415
F G + +LE + L I VIQ + ++V K L + L
Sbjct: 209 -FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ--LAHYVVTAKLLGF--TPGEL 263
Query: 416 QRWTRGYLARRLVLHMRRTRAAVRIQSA--VRAFIRR-RQYLRLRALVLGLQC------- 465
+ + +G H + AV I +F R+ + + +G++C
Sbjct: 264 RSYLKG-----ATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-LFFIGVRCYEAYPNT 317
Query: 466 ----------AARG------MLV-----RREV-RRVRENRAALRIQTRVRGFLARRNYEA 503
ML + +V V + + L +V ++ N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV--EISLVN--- 372
Query: 504 TRAKIVIC--QASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIISMQQR 554
+V+ S+ +K K + GL+ I +R
Sbjct: 373 GAKNLVVSGPPQSLYGL--NLTLRKAKAPS-----------GLDQSRIPFSER 412
Score = 35.0 bits (80), Expect = 0.082
Identities = 39/285 (13%), Positives = 79/285 (27%), Gaps = 90/285 (31%)
Query: 320 EFYNRYRVLCGNLKQ-YNTA-VHSMNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYL 377
+ Y + + +N A H + G SI D G+
Sbjct: 1634 DLYKTSKAA----QDVWNRADNHFKDTYGF-----SILDIVI-NNPVNLTIHFGGEKG-- 1681
Query: 378 EKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWT--RGYLARRLVLHMRRTR 435
+++R + V L +K + +T + +G L T+
Sbjct: 1682 KRIRENYSAMIF---ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL--------SATQ 1730
Query: 436 ------AAVRIQSAVRAFIRRRQYLRLRALV----LG----LQCAA-------------- 467
+ +A ++ + + A LG L A
Sbjct: 1731 FTQPALTLMEK-AAFED-LKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFY 1788
Query: 468 RGMLVRREVRRVRENR-----AALRIQTRVRGF-----------LARR--------NYEA 503
RGM ++ V R R A+ F + +R NY
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 504 TRAKIVI--------CQASIRRFLAKKRFKKMK-KEARSVEHVKK 539
+ V ++ F+ ++ ++ +++ S+E V+
Sbjct: 1849 ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 32.7 bits (74), Expect = 0.39
Identities = 48/285 (16%), Positives = 81/285 (28%), Gaps = 93/285 (32%)
Query: 154 ADDVTYDTAGFLEKNRDTVYEEQIAL-LHSSTNTSQQSSTKSGAKRMAALAASKTATLPS 212
AD+ DT GF D V + L +H ++ A + K T
Sbjct: 1649 ADNHFKDTYGF--SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKI 1706
Query: 213 SKSKQHKKTVGSQFRESLSLLMRTLNSTIP-----HY--IRCIK-----PNDTKRAF--- 257
K ++ + FR LL T T P +K P D F
Sbjct: 1707 FKEI-NEHSTSYTFRSEKGLLSATQF-TQPALTLMEKAAFEDLKSKGLIPADA--TFAGH 1762
Query: 258 ---EFNAHRTMQQLRAC-GVL---ETIRISAA-GQFEFNA------HRTMQQLRACG--- 300
E+ A L + V+ + + G A R+ + A
Sbjct: 1763 SLGEYAA------LASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGR 1816
Query: 301 --------VLETI--RISAAGFPSRWTYGEF-----YN----RYRVLCGNLKQYNTAVHS 341
L+ + R+ G YN +Y V G+L+ A+ +
Sbjct: 1817 VAASFSQEALQYVVERVGKRT-------GWLVEIVNYNVENQQY-VAAGDLR----ALDT 1864
Query: 342 MNEIGEHIVTSSIADCDKYKFGKTKIFFRSGQVAYLEKLRAEKLK 386
+ + + K K I + + L E+++
Sbjct: 1865 VTNV-----------LNFIKLQKIDI------IELQKSLSLEEVE 1892
Score = 32.3 bits (73), Expect = 0.56
Identities = 85/583 (14%), Positives = 152/583 (26%), Gaps = 182/583 (31%)
Query: 1 PSNSNRNLSQ-----SQSSSSSNQGAAFQTTPPS------RFIGVLDIYGFETFDSNNFE 49
P+ S SQ ++ +G A P + +F+G + S+ E
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG---------YVSSLVE 73
Query: 50 QFCINYANEKLQ---QQFNQ--------HVF--KLEQEEYLQEGIEWKFIDFY------D 90
+ ++ L +F H KL QE + I Y
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMA 133
Query: 91 NQPCIDLIESKL------GILDLL--------DEECKMPKGSDTSWAE--KLYTKCSDKW 134
+P S L G L+ ++ + E LY
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY---------FEELRDLYQT----- 179
Query: 135 SKHFVKPRFGAGSFLVKHFADDVTYDTAGFLEKNRDTVYEEQIALLHSSTNTSQQSSTKS 194
V + + + + V+ + + +L N S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTL---------DAEKVFTQGLNILEWLENPSNTPDK-- 228
Query: 195 GAKRMAALAASKTATLP----------SSKSKQHKKTVGSQFRESLSLLMRTLNSTIPHY 244
L S + P +K T G + R L +
Sbjct: 229 -----DYLL-SIPISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGA-----TGHSQG 276
Query: 245 I---RCIKPNDTKRAFEFNAHRTMQQLRACGV-------LETIRISAAGQFEFNAHRT-- 292
+ I D+ +F + + + L GV ++ S N
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 293 -MQQLRACG-----VLETIRISAAGFP-SRWTYGEFYN--RYRVLCGN---LKQYNTAVH 340
M L V + + + + P + N + V+ G L N +
Sbjct: 337 PM--LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 341 SMNEIGEHIVTSSIADCDKYK--FGKTKI-----F------FRSGQVAYLEKLRAEKLKR 387
+ + D+ + F + K+ F F S L A L
Sbjct: 395 KA---------KAPSGLDQSRIPFSERKLKFSNRFLPVASPFHS---HLLVP--ASDL-- 438
Query: 388 CCIVIQKNVRC--FLVRKKYLSI-LKSVAT---LQRWTRGYLARRLVLHMRRTRAAVRIQ 441
I K++ K + I + L R G ++ R+V + R V+ +
Sbjct: 439 ----INKDLVKNNVSFNAKDIQIPVYDTFDGSDL-RVLSGSISERIVDCI--IRLPVKWE 491
Query: 442 SAVRAFIRRRQYLRLRALVLG-LQCAARGMLVRREVR----RV 479
+ + L G + G+L R RV
Sbjct: 492 TTTQFKA-------THILDFGPGGASGLGVLTHRNKDGTGVRV 527
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand,
voltage-gated sodium channel regulation, CTD binds to
FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens}
PDB: 2kbi_A
Length = 168
Score = 33.1 bits (75), Expect = 0.10
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 472 VRREVRRVRENRAALRIQTRVRGFLARRNYEAT 504
+ +RR E +A+ IQ R L +R+ +
Sbjct: 120 ITTTLRRKHEEVSAMVIQRAFRRHLLQRSLKHA 152
Score = 27.7 bits (61), Expect = 6.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 436 AAVRIQSAVRAFIRRRQ 452
+A+ IQ A R + +R
Sbjct: 132 SAMVIQRAFRRHLLQRS 148
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid
phosphatase metalloenzyme, uteroferrin, hydrolase; HET:
NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A*
2bq8_X 1qfc_A* 1qhw_A*
Length = 313
Score = 29.6 bits (66), Expect = 2.6
Identities = 14/86 (16%), Positives = 30/86 (34%), Gaps = 3/86 (3%)
Query: 307 ISAAGFPSRWTYGEFYNRYRVLCGNLKQYNTAVHSMNEIGEHIVTSSIADCDKYKFGKTK 366
I+ + RW + Y R R + + N +V + +S +
Sbjct: 102 IAYSKISKRWNFPSPYYRLR---FKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRN 158
Query: 367 IFFRSGQVAYLEKLRAEKLKRCCIVI 392
+ Q+A+++K A + +V
Sbjct: 159 LALARTQLAWIKKQLAAAKEDYVLVA 184
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 29.7 bits (67), Expect = 3.0
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 255 RAFEFNAHRTMQQLRACGVLETIRISAAGQFEFNAHRTMQQLRACGVLETIRISAAGFPS 314
R R+M+ R GV + +I AG + R G E RI +
Sbjct: 66 RVGTIGP-RSMELFRRWGVAK--QIRTAGWPGDHPLDAAWVTRVGGH-EVYRIPLGTADT 121
Query: 315 RWTYGEFYNRYRVLC 329
R E +C
Sbjct: 122 R-ATPEHTPEPDAIC 135
>3onq_A Regulator of polyketide synthase expression; structural genomics,
PSI-2, protein structure initiative; HET: MSE; 2.10A
{Bifidobacterium adolescentis}
Length = 262
Score = 28.8 bits (64), Expect = 4.4
Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 435 RAAVRIQSAVRAFIRRRQYLRLRAL----VLGLQCAARGMLVRREVRRVRENRAALRIQT 490
R + A A + LR L L AR L R + +R
Sbjct: 141 RETMFSLQAAPALSTPSRPLRADELLPERALLGDDYAREELYRNVYQVLRGENPDDPTYL 200
Query: 491 RVRGFLAR-RNYEAT 504
V FL + E T
Sbjct: 201 TVSTFLKYGSSLENT 215
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix
bundle, actin-binding, ATP-binding, calmodulin-binding,
coiled coil; 2.70A {Sus scrofa}
Length = 148
Score = 27.7 bits (61), Expect = 6.3
Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 376 YLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLARRLVLHMRRTR 435
+L R +K++ C + + K ++ K ++ +Q+ R +L +R H R
Sbjct: 18 WLICSRWKKVQWCSLSVIK------LKNKIKYRAEACIKMQKTIRMWLCKR--RHKPRID 69
Query: 436 AAVRIQS 442
V++ +
Sbjct: 70 GLVKVGT 76
>3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I
2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I
3i8f_K 3i8i_K 3i9c_K 3i9e_K ...
Length = 148
Score = 27.1 bits (61), Expect = 8.7
Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 16/67 (23%)
Query: 499 RNY--------EATRAKIVICQASIRRFLAKKRFKKMKKEARSVEHVKKLNKGLENKIIS 550
RNY AT + + + L + + K+ A ++L + LEN ++
Sbjct: 27 RNYLLPRGLAVLATESNL--------KALEARIRAQAKRLAERKAEAERLKEILENLTLT 78
Query: 551 MQQRIGD 557
+ R G+
Sbjct: 79 IPVRAGE 85
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 28.1 bits (63), Expect = 8.8
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 315 RWTYGEFYNRYRVLCG----NLKQYNTAVHSMNEIGEHI 349
RW+ E RYR++ NL +N V E G +
Sbjct: 284 RWSVAEMERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPL 322
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 28.0 bits (63), Expect = 9.4
Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 6/20 (30%)
Query: 420 RGYLARRLVLHMRRTRAAVR 439
GYLAR + +RR ++R
Sbjct: 362 AGYLARLM---IRR---SLR 375
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.133 0.388
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,373,442
Number of extensions: 505386
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1109
Number of HSP's successfully gapped: 70
Length of query: 560
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 462
Effective length of database: 3,965,535
Effective search space: 1832077170
Effective search space used: 1832077170
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.3 bits)