BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10329
(606 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F6H|X Chain X, Myosin V Cargo Binding Domain
Length = 419
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 98/192 (51%), Gaps = 11/192 (5%)
Query: 392 VWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRLGRSESVGS---SPGDLQALL 448
+W+ + + ++ IN++VI ES+P S+G+ S + + D+
Sbjct: 157 IWLKKLQKQLQKKAINAVVIS-----ESLPGFSAGETSGFLNKIFANTEEYTMDDILTFF 211
Query: 449 MSFYKLLVLHGIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQ 508
S Y + I+ E+ + V L Y+ A N L++++ W RG+Q+ YN++ LE+
Sbjct: 212 NSIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEE 271
Query: 509 FTRDNKMADGEINEQLSPLIQASQLLQARK-TQEDVNTVCEMCNKMSTNQLESLENELNR 567
+ + + + DG E L LIQ ++LLQ RK T ED++ + +C ++ QL+ L ++
Sbjct: 272 WCKTHGLTDG--TECLQHLIQTAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQV 329
Query: 568 ARTENADLRHVM 579
A E+ + ++
Sbjct: 330 ADYESPIPQEIL 341
>pdb|3UNG|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
pdb|3UR3|C Chain C, Structure Of The Cmr2 Subunit Of The Crispr Rna Silencing
Complex
Length = 693
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 360 KAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVWIYQA 397
K + T V +Q LANF RE R V+ D G+ IY
Sbjct: 456 KYYSTPQVHVAISQALANFSIREVRSVVKDEGLLIYAG 493
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 47 KAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVQLESEVDELKTRLMNDR 96
K + T V +Q LANF RE R V+ D G+ + + D++ L D+
Sbjct: 456 KYYSTPQVHVAISQALANFSIREVRSVVKDEGLLIYAGGDDVLAILPVDK 505
>pdb|4DOZ|A Chain A, Crystal Structure Of Pyrococcus Furiosus Cmr2 (Cas10)
Length = 686
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 360 KAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVWIYQA 397
K + T V +Q LANF RE R V+ D G+ IY
Sbjct: 441 KYYSTPQVHVAISQALANFSIREVRSVVKDEGLLIYAG 478
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 47 KAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVQLESEVDELKTRLMNDR 96
K + T V +Q LANF RE R V+ D G+ + + D++ L D+
Sbjct: 441 KYYSTPQVHVAISQALANFSIREVRSVVKDEGLLIYAGGDDVLAILPVDK 490
>pdb|3SOG|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1
Length = 205
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 90 TRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQD 130
TRL + YL+ I+G+Q+ ++KL+E L + Y D +D
Sbjct: 23 TRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGRED 63
>pdb|4ATM|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1 At 1.8 Angstrom Resolution Featuring Increased
Order At The N-Terminus
Length = 243
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 90 TRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQD 130
TRL + YL+ I+G+Q+ ++KL+E L + Y D +D
Sbjct: 55 TRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGRED 95
>pdb|2FIC|A Chain A, The Crystal Structure Of The Bar Domain From Human
Bin1AMPHIPHYSIN II And Its Implications For Molecular
Recognition
pdb|2FIC|B Chain B, The Crystal Structure Of The Bar Domain From Human
Bin1AMPHIPHYSIN II And Its Implications For Molecular
Recognition
Length = 251
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 90 TRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTD 124
TRL D YL+ ++ + + + KL+ECL + Y D
Sbjct: 69 TRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPD 103
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 443 DLQALLMSFYKLLVLHGIDMEIINQVFKQLY--YYIGASSLNNLLLRKELCHWTRGMQIR 500
D + ++S ++ G+ + + +K+L+ Y G+ S +NL+ TR
Sbjct: 794 DATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAV-----TRRFSTE 848
Query: 501 YNLSHLEQFTRDNK 514
Y L LEQF +DN+
Sbjct: 849 YELQQLEQFKKDNE 862
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,240,434
Number of Sequences: 62578
Number of extensions: 500480
Number of successful extensions: 1145
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1135
Number of HSP's gapped (non-prelim): 10
length of query: 606
length of database: 14,973,337
effective HSP length: 104
effective length of query: 502
effective length of database: 8,465,225
effective search space: 4249542950
effective search space used: 4249542950
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)