Query psy10329
Match_columns 606
No_of_seqs 246 out of 538
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 15:12:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1892|consensus 100.0 1.6E-38 3.5E-43 353.0 24.2 284 228-579 540-831 (1629)
2 PF01843 DIL: DIL domain; Int 100.0 3.1E-31 6.8E-36 236.2 6.9 101 467-568 1-102 (105)
3 COG5022 Myosin heavy chain [Cy 99.3 1.7E-11 3.7E-16 145.5 17.9 278 293-582 1110-1402(1463)
4 PF04091 Sec15: Exocyst comple 96.7 0.086 1.9E-06 56.2 17.5 243 297-566 44-311 (311)
5 PF04437 RINT1_TIP1: RINT-1 / 92.1 2.8 6.1E-05 47.4 14.5 170 380-563 304-491 (494)
6 KOG1892|consensus 86.9 0.51 1.1E-05 56.2 3.3 41 3-43 596-636 (1629)
7 PF05700 BCAS2: Breast carcino 85.6 6.3 0.00014 40.0 10.1 111 9-177 99-209 (221)
8 PF12325 TMF_TATA_bd: TATA ele 76.1 23 0.00049 32.9 9.3 81 72-177 19-102 (120)
9 PF15058 Speriolin_N: Sperioli 71.8 6.9 0.00015 39.1 5.1 37 144-183 8-44 (200)
10 PF09730 BicD: Microtubule-ass 71.2 26 0.00057 41.7 10.5 53 98-167 94-147 (717)
11 KOG0995|consensus 71.1 38 0.00081 39.1 11.2 89 73-183 239-327 (581)
12 PF06046 Sec6: Exocyst complex 69.6 1.6E+02 0.0034 33.7 16.3 174 382-579 357-541 (566)
13 PF09744 Jnk-SapK_ap_N: JNK_SA 66.4 1.3E+02 0.0029 29.2 13.6 106 3-117 3-112 (158)
14 PF09726 Macoilin: Transmembra 64.2 30 0.00065 41.2 9.2 77 77-178 567-650 (697)
15 PF06005 DUF904: Protein of un 63.7 42 0.00092 28.4 7.6 21 94-114 18-38 (72)
16 PF04880 NUDE_C: NUDE protein, 63.6 6.6 0.00014 38.5 3.1 34 72-113 10-43 (166)
17 COG2433 Uncharacterized conser 63.2 75 0.0016 37.1 11.6 133 29-180 374-511 (652)
18 KOG1962|consensus 62.3 17 0.00036 37.1 5.8 22 146-167 191-212 (216)
19 PF10234 Cluap1: Clusterin-ass 62.1 1.5E+02 0.0032 31.4 12.8 82 29-117 129-213 (267)
20 KOG1853|consensus 61.2 82 0.0018 33.0 10.4 46 66-111 35-83 (333)
21 PF10473 CENP-F_leu_zip: Leuci 60.0 73 0.0016 30.5 9.3 40 74-113 22-64 (140)
22 PF10226 DUF2216: Uncharacteri 59.9 85 0.0018 31.5 10.0 36 74-117 43-78 (195)
23 PF09738 DUF2051: Double stran 58.1 1.5E+02 0.0033 31.8 12.4 33 143-177 214-246 (302)
24 KOG0999|consensus 58.0 48 0.001 38.2 8.9 54 97-167 166-220 (772)
25 PF08614 ATG16: Autophagy prot 57.8 38 0.00082 33.6 7.5 97 65-182 81-184 (194)
26 PF04849 HAP1_N: HAP1 N-termin 57.0 81 0.0018 33.9 10.0 32 144-177 216-247 (306)
27 PF15070 GOLGA2L5: Putative go 55.7 36 0.00077 40.0 7.8 85 67-177 89-180 (617)
28 PF08172 CASP_C: CASP C termin 55.5 24 0.00051 36.8 5.7 41 71-115 88-128 (248)
29 PF02403 Seryl_tRNA_N: Seryl-t 55.0 1.4E+02 0.0031 26.4 10.0 83 68-168 12-94 (108)
30 PF04849 HAP1_N: HAP1 N-termin 54.7 64 0.0014 34.7 8.8 16 92-107 232-247 (306)
31 COG3074 Uncharacterized protei 53.4 1.1E+02 0.0025 25.9 8.2 22 94-115 18-39 (79)
32 PRK15422 septal ring assembly 53.1 91 0.002 27.0 7.8 22 94-115 18-39 (79)
33 PF08317 Spc7: Spc7 kinetochor 52.3 1.1E+02 0.0025 32.7 10.5 22 94-115 209-230 (325)
34 PF04111 APG6: Autophagy prote 51.6 71 0.0015 34.3 8.8 31 145-177 103-133 (314)
35 PF00038 Filament: Intermediat 51.3 1.6E+02 0.0036 30.8 11.4 34 146-181 274-307 (312)
36 PRK05560 DNA gyrase subunit A; 50.4 1.1E+02 0.0024 37.2 10.9 105 61-181 336-454 (805)
37 PRK05561 DNA topoisomerase IV 49.7 1.2E+02 0.0025 36.7 10.9 102 62-180 347-460 (742)
38 COG4372 Uncharacterized protei 49.3 1.4E+02 0.0031 33.1 10.4 92 64-177 73-164 (499)
39 PRK13979 DNA topoisomerase IV 48.7 75 0.0016 39.3 9.3 105 60-180 351-469 (957)
40 PRK10884 SH3 domain-containing 48.2 65 0.0014 32.6 7.4 28 148-177 132-159 (206)
41 PF07798 DUF1640: Protein of u 47.9 2.3E+02 0.0049 27.7 11.0 22 94-115 73-94 (177)
42 smart00338 BRLZ basic region l 46.6 45 0.00097 27.1 4.9 33 146-180 31-63 (65)
43 TIGR01062 parC_Gneg DNA topois 45.5 1.3E+02 0.0029 36.1 10.5 102 63-181 335-448 (735)
44 PF12711 Kinesin-relat_1: Kine 44.9 34 0.00075 30.0 4.2 20 149-168 45-64 (86)
45 PF11559 ADIP: Afadin- and alp 44.2 2.8E+02 0.006 26.1 11.6 22 143-164 128-149 (151)
46 TIGR01063 gyrA DNA gyrase, A s 44.2 1.3E+02 0.0029 36.4 10.4 104 61-180 333-450 (800)
47 PRK10884 SH3 domain-containing 44.0 1.5E+02 0.0032 30.1 9.2 30 146-177 137-166 (206)
48 PF12325 TMF_TATA_bd: TATA ele 44.0 2.4E+02 0.0052 26.2 9.8 30 146-177 49-81 (120)
49 PF07412 Geminin: Geminin; In 43.6 72 0.0016 32.3 6.8 55 61-116 92-154 (200)
50 KOG0994|consensus 43.5 67 0.0014 40.1 7.5 84 67-168 1210-1294(1758)
51 KOG4643|consensus 43.0 1.7E+02 0.0036 36.3 10.5 96 78-177 186-291 (1195)
52 PF14662 CCDC155: Coiled-coil 41.9 1.8E+02 0.0039 29.3 9.1 29 146-176 100-128 (193)
53 KOG4460|consensus 40.4 2.5E+02 0.0054 32.7 10.9 127 38-175 550-687 (741)
54 KOG0804|consensus 40.3 1.7E+02 0.0038 33.0 9.6 15 154-168 427-441 (493)
55 cd00187 TOP4c DNA Topoisomeras 40.2 2.2E+02 0.0048 32.2 10.8 104 61-180 311-428 (445)
56 PHA02562 46 endonuclease subun 40.1 1.4E+02 0.003 34.0 9.3 32 144-177 361-392 (562)
57 PF08700 Vps51: Vps51/Vps67; 39.4 1.6E+02 0.0035 24.8 7.5 44 74-117 31-74 (87)
58 COG3524 KpsE Capsule polysacch 39.4 2E+02 0.0044 31.1 9.5 58 94-168 251-308 (372)
59 PF14182 YgaB: YgaB-like prote 38.8 99 0.0021 26.8 5.9 43 75-119 23-65 (79)
60 PF00170 bZIP_1: bZIP transcri 36.9 69 0.0015 25.9 4.6 31 146-178 31-61 (64)
61 TIGR01061 parC_Gpos DNA topois 36.8 2.3E+02 0.005 34.2 10.7 102 63-180 335-450 (738)
62 COG2433 Uncharacterized conser 36.3 1.9E+02 0.0041 34.0 9.4 69 94-180 436-504 (652)
63 PF14197 Cep57_CLD_2: Centroso 35.6 2.7E+02 0.0058 23.4 9.0 26 150-177 42-67 (69)
64 KOG0971|consensus 35.6 1.3E+02 0.0028 36.9 8.1 29 147-177 447-475 (1243)
65 PF07393 Sec10: Exocyst comple 35.6 8.3E+02 0.018 29.1 17.1 167 382-563 527-697 (710)
66 COG3883 Uncharacterized protei 35.0 2.8E+02 0.0061 29.3 9.8 33 149-183 74-106 (265)
67 PRK11637 AmiB activator; Provi 34.7 2.9E+02 0.0062 30.7 10.6 23 146-168 101-123 (428)
68 PF07106 TBPIP: Tat binding pr 34.6 1.5E+02 0.0033 28.5 7.4 23 146-168 114-136 (169)
69 PF06156 DUF972: Protein of un 34.6 2E+02 0.0044 26.2 7.7 54 71-168 3-56 (107)
70 PRK11637 AmiB activator; Provi 34.3 4E+02 0.0087 29.5 11.6 17 149-165 234-250 (428)
71 KOG0971|consensus 34.3 3.1E+02 0.0067 33.8 10.8 15 183-197 554-568 (1243)
72 PRK09039 hypothetical protein; 34.0 3.5E+02 0.0075 29.5 10.7 51 67-118 55-105 (343)
73 PF04793 Herpes_BBRF1: BRRF1-l 33.6 3.2E+02 0.007 29.2 10.1 77 469-548 191-273 (284)
74 COG3074 Uncharacterized protei 33.4 1.3E+02 0.0029 25.5 5.6 41 75-115 17-60 (79)
75 PF07888 CALCOCO1: Calcium bin 33.4 2.5E+02 0.0054 32.7 9.8 30 146-177 204-233 (546)
76 smart00546 CUE Domain that may 33.4 57 0.0012 24.2 3.3 29 540-568 3-31 (43)
77 PRK09631 DNA topoisomerase IV 33.2 2.6E+02 0.0056 33.2 10.1 38 141-180 389-427 (635)
78 PF00170 bZIP_1: bZIP transcri 32.9 2E+02 0.0044 23.1 6.8 40 70-109 20-62 (64)
79 PF12718 Tropomyosin_1: Tropom 32.7 4.2E+02 0.0092 25.2 9.9 84 76-177 14-100 (143)
80 PF05010 TACC: Transforming ac 32.6 5.5E+02 0.012 26.1 11.9 33 146-180 166-198 (207)
81 TIGR03752 conj_TIGR03752 integ 32.5 2.1E+02 0.0045 32.7 8.8 38 74-115 57-94 (472)
82 KOG0412|consensus 32.4 9.7E+02 0.021 28.9 17.1 175 372-564 583-767 (773)
83 PF15058 Speriolin_N: Sperioli 32.0 88 0.0019 31.5 5.2 39 96-168 7-45 (200)
84 PF15070 GOLGA2L5: Putative go 31.9 4.6E+02 0.01 31.0 11.9 85 70-164 16-103 (617)
85 COG4026 Uncharacterized protei 31.4 2.9E+02 0.0063 28.6 8.8 119 35-180 77-200 (290)
86 PF03961 DUF342: Protein of un 30.7 2.4E+02 0.0051 31.7 9.1 35 144-180 371-405 (451)
87 PF08317 Spc7: Spc7 kinetochor 30.3 4.3E+02 0.0094 28.3 10.7 96 19-117 161-267 (325)
88 PF00804 Syntaxin: Syntaxin; 30.2 3.4E+02 0.0073 22.9 8.7 56 94-165 7-62 (103)
89 PRK14127 cell division protein 30.0 4.4E+02 0.0096 24.2 9.3 46 62-115 20-65 (109)
90 PF04899 MbeD_MobD: MbeD/MobD 29.5 2.3E+02 0.0051 23.9 6.6 29 146-176 33-61 (70)
91 PF09789 DUF2353: Uncharacteri 29.3 6.2E+02 0.013 27.6 11.4 32 150-181 191-227 (319)
92 PLN02678 seryl-tRNA synthetase 29.3 4.5E+02 0.0097 29.8 10.9 63 90-168 36-98 (448)
93 PF05557 MAD: Mitotic checkpoi 29.3 3.9E+02 0.0083 32.0 11.0 24 158-183 609-632 (722)
94 PF14923 CCDC142: Coiled-coil 29.2 9E+02 0.019 27.6 13.1 118 383-515 228-353 (450)
95 PF02845 CUE: CUE domain; Int 29.2 81 0.0017 23.4 3.5 29 540-568 2-30 (42)
96 PLN03229 acetyl-coenzyme A car 29.1 1.9E+02 0.0041 34.8 8.1 57 99-175 671-730 (762)
97 PF06818 Fez1: Fez1; InterPro 29.0 2.4E+02 0.0053 28.6 7.8 87 82-182 16-105 (202)
98 COG4026 Uncharacterized protei 28.9 4.3E+02 0.0092 27.5 9.5 23 146-168 182-204 (290)
99 PRK05431 seryl-tRNA synthetase 28.8 5.2E+02 0.011 28.9 11.3 34 85-119 27-60 (425)
100 KOG1151|consensus 28.8 7.9E+02 0.017 28.4 12.3 33 156-192 333-366 (775)
101 TIGR03752 conj_TIGR03752 integ 28.5 3.1E+02 0.0066 31.4 9.3 77 70-168 57-136 (472)
102 PF08826 DMPK_coil: DMPK coile 28.2 84 0.0018 25.9 3.7 35 141-177 11-45 (61)
103 PF08826 DMPK_coil: DMPK coile 27.8 2.4E+02 0.0052 23.3 6.2 36 74-113 23-58 (61)
104 PF00769 ERM: Ezrin/radixin/mo 27.8 5.1E+02 0.011 26.8 10.3 30 146-177 80-109 (246)
105 KOG1655|consensus 27.5 2.2E+02 0.0048 28.9 7.1 30 94-123 126-155 (218)
106 KOG4593|consensus 27.3 7.4E+02 0.016 29.7 12.3 110 5-118 404-527 (716)
107 KOG0946|consensus 27.2 6.5E+02 0.014 30.8 11.8 23 22-44 617-639 (970)
108 PF15112 DUF4559: Domain of un 27.1 4.8E+02 0.01 28.2 10.0 62 9-73 139-206 (307)
109 PF13747 DUF4164: Domain of un 27.0 2.4E+02 0.0052 24.8 6.6 60 100-177 7-66 (89)
110 PRK13169 DNA replication intia 27.0 2.9E+02 0.0062 25.4 7.3 52 68-120 4-55 (110)
111 KOG0977|consensus 26.3 2.7E+02 0.0059 32.3 8.6 55 66-120 71-132 (546)
112 KOG0995|consensus 26.1 4.5E+02 0.0097 30.7 10.1 24 94-117 301-324 (581)
113 PF06730 FAM92: FAM92 protein; 25.8 6.1E+02 0.013 26.1 10.1 37 143-180 148-184 (219)
114 KOG3156|consensus 25.8 2.4E+02 0.0053 28.9 7.1 17 141-157 134-150 (220)
115 PF00038 Filament: Intermediat 25.4 7.1E+02 0.015 26.0 11.1 37 145-183 107-143 (312)
116 TIGR00219 mreC rod shape-deter 25.1 1.4E+02 0.0031 31.5 5.8 40 81-120 71-110 (283)
117 TIGR02231 conserved hypothetic 25.1 3.3E+02 0.0071 31.1 9.1 39 143-183 133-171 (525)
118 KOG4571|consensus 25.0 1.1E+02 0.0024 32.6 4.8 30 146-177 253-282 (294)
119 PF02388 FemAB: FemAB family; 24.9 2.4E+02 0.0052 31.3 7.8 61 59-119 232-298 (406)
120 PF11932 DUF3450: Protein of u 24.8 5.2E+02 0.011 26.5 9.8 45 67-113 23-68 (251)
121 PF07558 Shugoshin_N: Shugoshi 24.7 76 0.0016 24.5 2.7 20 146-165 26-45 (46)
122 PF14916 CCDC92: Coiled-coil d 24.6 1.8E+02 0.0039 24.0 4.9 38 78-115 5-42 (60)
123 PF14775 NYD-SP28_assoc: Sperm 24.3 1.1E+02 0.0023 25.0 3.6 27 94-120 33-59 (60)
124 PF09032 Siah-Interact_N: Siah 24.2 1.6E+02 0.0034 25.6 4.8 39 101-156 3-41 (79)
125 PF10168 Nup88: Nuclear pore c 24.1 7.1E+02 0.015 30.0 11.8 35 141-177 632-666 (717)
126 PF11559 ADIP: Afadin- and alp 24.0 6E+02 0.013 23.8 10.2 54 61-115 27-80 (151)
127 PF04111 APG6: Autophagy prote 24.0 99 0.0022 33.2 4.4 31 145-177 47-77 (314)
128 smart00434 TOP4c DNA Topoisome 23.9 2.8E+02 0.006 31.4 8.1 40 141-182 400-440 (445)
129 PF05769 DUF837: Protein of un 23.8 5.6E+02 0.012 25.4 9.3 50 101-165 128-177 (181)
130 KOG4360|consensus 23.8 3.2E+02 0.007 31.5 8.3 63 94-177 233-302 (596)
131 PF10473 CENP-F_leu_zip: Leuci 23.7 4.2E+02 0.0092 25.4 8.1 82 80-182 7-91 (140)
132 PF03962 Mnd1: Mnd1 family; I 23.7 6.6E+02 0.014 25.0 9.8 25 94-118 103-127 (188)
133 KOG4005|consensus 23.6 3.6E+02 0.0077 28.2 7.9 56 94-177 90-145 (292)
134 TIGR00414 serS seryl-tRNA synt 23.5 6.4E+02 0.014 28.2 10.8 29 91-119 34-62 (418)
135 PF06785 UPF0242: Uncharacteri 23.4 4.2E+02 0.009 29.1 8.7 28 146-175 132-159 (401)
136 smart00787 Spc7 Spc7 kinetocho 23.3 6.6E+02 0.014 27.1 10.4 8 23-30 128-135 (312)
137 KOG2264|consensus 23.3 5.1E+02 0.011 30.5 9.7 86 25-116 27-122 (907)
138 PRK10803 tol-pal system protei 23.1 4.2E+02 0.0092 27.6 8.8 23 146-168 80-102 (263)
139 PF14915 CCDC144C: CCDC144C pr 23.1 2.7E+02 0.0058 30.0 7.2 25 144-168 217-241 (305)
140 PTZ00419 valyl-tRNA synthetase 22.9 2.3E+02 0.005 35.2 7.8 64 94-179 929-993 (995)
141 PF10212 TTKRSYEDQ: Predicted 22.8 7.1E+02 0.015 28.9 10.9 30 146-177 485-514 (518)
142 KOG4196|consensus 22.7 2.4E+02 0.0052 26.8 6.0 36 82-118 76-112 (135)
143 PRK13169 DNA replication intia 22.5 4.4E+02 0.0095 24.2 7.6 16 152-167 40-55 (110)
144 PF06005 DUF904: Protein of un 22.2 4.9E+02 0.011 22.1 7.6 42 73-114 15-59 (72)
145 PLN02320 seryl-tRNA synthetase 22.0 5.8E+02 0.013 29.5 10.1 34 85-119 92-125 (502)
146 TIGR01843 type_I_hlyD type I s 22.0 1E+03 0.022 25.6 11.8 27 94-120 165-191 (423)
147 PF06160 EzrA: Septation ring 21.6 5.6E+02 0.012 29.7 10.2 70 53-123 259-338 (560)
148 COG0188 GyrA Type IIA topoisom 21.6 4.8E+02 0.01 31.9 9.8 105 60-180 339-457 (804)
149 PF08172 CASP_C: CASP C termin 21.4 1.4E+02 0.003 31.2 4.7 23 146-168 112-134 (248)
150 PF04102 SlyX: SlyX; InterPro 21.3 3.1E+02 0.0068 22.7 6.0 35 81-115 2-39 (69)
151 PRK13922 rod shape-determining 21.0 1.7E+02 0.0037 30.4 5.4 24 96-119 88-111 (276)
152 KOG2391|consensus 21.0 1E+03 0.022 26.3 11.0 31 138-168 293-323 (365)
153 TIGR03495 phage_LysB phage lys 20.9 3.7E+02 0.008 25.6 7.0 54 94-162 40-96 (135)
154 PF09738 DUF2051: Double stran 20.8 4.1E+02 0.0089 28.6 8.2 63 94-168 105-167 (302)
155 PF02183 HALZ: Homeobox associ 20.7 3E+02 0.0066 21.2 5.3 34 80-113 2-38 (45)
156 PF09789 DUF2353: Uncharacteri 20.6 9.1E+02 0.02 26.3 10.7 38 144-183 68-108 (319)
157 PF07889 DUF1664: Protein of u 20.6 7.2E+02 0.016 23.4 9.2 45 71-115 38-82 (126)
158 PHA02562 46 endonuclease subun 20.6 7.1E+02 0.015 28.2 10.7 31 145-177 217-247 (562)
159 PF10146 zf-C4H2: Zinc finger- 20.4 5.5E+02 0.012 26.5 8.7 23 146-168 79-101 (230)
160 PF01486 K-box: K-box region; 20.3 5.7E+02 0.012 22.4 7.8 64 36-117 31-98 (100)
161 PRK11546 zraP zinc resistance 20.3 6.4E+02 0.014 24.3 8.5 59 84-168 51-109 (143)
162 PF13851 GAS: Growth-arrest sp 20.3 4.7E+02 0.01 26.3 8.1 36 145-182 97-132 (201)
163 PF12808 Mto2_bdg: Micro-tubul 20.2 1.5E+02 0.0033 23.7 3.6 38 79-117 7-45 (52)
No 1
>KOG1892|consensus
Probab=100.00 E-value=1.6e-38 Score=353.04 Aligned_cols=284 Identities=20% Similarity=0.287 Sum_probs=239.9
Q ss_pred cccceeecccHHHHHHhhhhcccccccchhcchhhhhhhhhcccccccccccchHHHHHHhhccCh-hHHHHHHHHHhhh
Q psy10329 228 LGMFEFEKSDINIIMKRLITDKFLEGISVVFNACNVIRKKERTYLGMFEFEKSDINIIMKRLITGL-PAYIFFMCVRHTD 306 (606)
Q Consensus 228 ~g~le~~~~de~~~l~~li~dl~p~~~~~~~~~~~~~~~~~~~~~qml~f~~~Dl~~i~~~L~P~~-PAyiLfmciR~ad 306 (606)
...+||+...++-+|..||. -+..++ .+++.|.+ |+|-.+...+-.
T Consensus 540 ~~si~~~d~~~~sfL~~vi~-~~a~t~-------------------------------~~~~s~~y~y~~S~~yrp~~~- 586 (1629)
T KOG1892|consen 540 GASIEFRDSSEDSFLSAVIN-TNASTV-------------------------------HFKLSPTYRYVLSNQYRPDIS- 586 (1629)
T ss_pred ccceecccCcHHHHHHHHHh-Cccccc-------------------------------ccccCcccchhhhcccccccC-
Confidence 34599999999999999987 344444 23332221 222221111111
Q ss_pred hcCChHHHHHHHHHHHHHHHHHHHhhcCCcccchhHHHhHHHHHHHHhhhcccccccccchhhhhhhhccccchHHHHHH
Q psy10329 307 YINDEEKVRCLLSAIILNVKRVVKKRYEDLDSTILWLTNLLRLLNLLKQYSGEKAFQTDNTEVQNAQCLANFDFREYRQV 386 (606)
Q Consensus 307 ~~~d~~~l~~LL~~ii~~Ik~vv~~~~~Dl~~lafWLSN~~eLL~fLkq~s~~~~f~~~nt~~Qn~~~L~~fdl~E~~~~ 386 (606)
..--..++..|+++++++++.|+++...+-..|+|||||+++|+||+|+|.+...|.. ..+.+
T Consensus 587 pTer~hk~i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~ls~~~~-----------------~aq~v 649 (1629)
T KOG1892|consen 587 PTERTHKVIAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRDLSRITL-----------------DAQDV 649 (1629)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccchhheeh-----------------hHHHH
Confidence 1122578999999999999999999988888999999999999999999988766542 46789
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhcCCCHHHHH
Q psy10329 387 LSDTGVWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRLGRSESVGSSPGDLQALLMSFYKLLVLHGIDMEIIN 466 (606)
Q Consensus 387 L~dLi~~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~kR~~s~~~s~~~i~~IL~~~~~lL~~~~V~p~Li~ 466 (606)
|+.+|+.+|..||.|++..|.+ -.||+|+.+....- ....+..+|+.+|.+|+.|+|+++|++
T Consensus 650 la~~vq~aFr~LV~clqsel~~-~~~afLden~~~~~----------------a~gdVlh~L~~aM~llRrCrvNAALTI 712 (1629)
T KOG1892|consen 650 LAHLVQMAFRYLVHCLQSELNN-YMPAFLDENSLQRP----------------AIGDVLHTLTGAMSLLRRCRVNAALTI 712 (1629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhccccCc----------------cccchHHHhHHHHHHHHHhccchHHHH
Confidence 9999999999999999999999 48999986644421 134577889999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHhhc--CcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHHHHhhhhccC-chhhH
Q psy10329 467 QVFKQLYYYIGASSLNNLLLR--KELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARK-TQEDV 543 (606)
Q Consensus 467 QlFsQLF~fIna~lFN~LLlr--k~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqLLQ~~K-T~~D~ 543 (606)
|+|+|||||||+++||+|+.. ..+|+-.||.-|++.|..||.||+.+|+ +.+|.|||.+|+||++||+++| ..+|+
T Consensus 713 QLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErqGl-ElAAdCHL~ri~Qaa~lL~~~K~a~ddi 791 (1629)
T KOG1892|consen 713 QLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQGL-ELAADCHLSRIVQAATLLTMDKYAPDDI 791 (1629)
T ss_pred HHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHhcc-hHhhhccHHHHHHHHHHHhccccChhhH
Confidence 999999999999999999999 5799999999999999999999999999 8999999999999999999999 89999
Q ss_pred HHHHhhcccCCHHHHHHHHhcCCCC----CCCchHHhhhh
Q psy10329 544 NTVCEMCNKMSTNQLESLENELNRA----RTENADLRHVM 579 (606)
Q Consensus 544 ~si~~~C~~Ln~~QL~kIL~~Y~p~----rV~~~fI~~v~ 579 (606)
..|..+|++||+.|+.+||+.|.|+ .+|.+++..+.
T Consensus 792 ~~l~stCfkLNSLQ~~alLq~~~~~~~e~~~p~dlvd~v~ 831 (1629)
T KOG1892|consen 792 PNLNSTCFKLNSLQLQALLQNYHCAPDEPFIPTDLVDNVV 831 (1629)
T ss_pred HhhccchhhcchHHHHHHHhcCCCCCCCCCCchHHHHHHH
Confidence 9999999999999999999999988 78989888764
No 2
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.97 E-value=3.1e-31 Score=236.19 Aligned_cols=101 Identities=42% Similarity=0.756 Sum_probs=89.5
Q ss_pred HHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHHHHhhhhccC-chhhHHH
Q psy10329 467 QVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARK-TQEDVNT 545 (606)
Q Consensus 467 QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqLLQ~~K-T~~D~~s 545 (606)
|+|+|+|||||+.+||+||.|+++|+|++|+||||||+.||+||+++|+ +..+.++|.|++||++|||++| +.+|++.
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l-~~~~~~~l~~l~Qa~~lL~~~k~~~~d~~~ 79 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGL-EEAAEEHLQPLSQAANLLQLRKSTLQDWDS 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTS-TTH-HHHCHHHHHHHHHCCC--SSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 8999999999999999999999999999999999999999999999999 4447999999999999999999 8999999
Q ss_pred HHhhcccCCHHHHHHHHhcCCCC
Q psy10329 546 VCEMCNKMSTNQLESLENELNRA 568 (606)
Q Consensus 546 i~~~C~~Ln~~QL~kIL~~Y~p~ 568 (606)
++++||+|||.||++||++|+|+
T Consensus 80 ~~~~c~~Ln~~Qi~~iL~~Y~~~ 102 (105)
T PF01843_consen 80 LRETCPSLNPAQIRKILSNYQPD 102 (105)
T ss_dssp HCCCTTTS-HHHHHHHHCCB---
T ss_pred HHHHcccCCHHHHHHHHHhCCCc
Confidence 99999999999999999999996
No 3
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.35 E-value=1.7e-11 Score=145.55 Aligned_cols=278 Identities=18% Similarity=0.281 Sum_probs=196.2
Q ss_pred hhHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHhhcCCc--ccchhHHHhHHHHHH---HHhhhcccccccccch
Q psy10329 293 LPAYIFFMCVRHTDYINDEEKVRCLLSAIILNVKRVVKKRYEDL--DSTILWLTNLLRLLN---LLKQYSGEKAFQTDNT 367 (606)
Q Consensus 293 ~PAyiLfmciR~ad~~~d~~~l~~LL~~ii~~Ik~vv~~~~~Dl--~~lafWLSN~~eLL~---fLkq~s~~~~f~~~nt 367 (606)
.||..+...+-..+..+..+....++...+..++.+......+. ....||.+|...+++ |.-.. ....+.....
T Consensus 1110 ~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 1188 (1463)
T COG5022 1110 KPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALS-EKRLYQSALY 1188 (1463)
T ss_pred chhhHHHHHHHHhhccchHHhhhhHHHHHHhhccchhccccchhccccccccccccccCCCCCchhhcc-hhhhhHhhhh
Confidence 47777766666656555566677778777778877776554433 346799999999874 22110 0000000000
Q ss_pred hhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhhhhccCCCCcccCCCCCCCCCCCCC-CCCcc
Q psy10329 368 EVQNAQCLANFDFREYRQVLSDTGVWIYQAVVRFMEEKINSIV----IPAILEFESIPVMSSGKPSRLGRSESV-GSSPG 442 (606)
Q Consensus 368 ~~Qn~~~L~~fdl~E~~~~L~dLi~~iy~~li~~i~k~L~~li----vpAiLe~esi~g~~~~k~~g~kR~~s~-~~s~~ 442 (606)
. .........+.+...-+..+...+|..|.... .+.+.+ +|... ..+++|+.+. . .....+ .-+..
T Consensus 1189 d--~~~~~s~s~v~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~-~~~~~~~~~~--~--~~~~~~~~~~~~ 1259 (1463)
T COG5022 1189 D--EKSKLSSSEVNDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEY-STSLKGFNNL--N--KKFDTPASMSNE 1259 (1463)
T ss_pred c--ccccccHHHHHHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhh-ccccccccch--h--hcccCcccCcHH
Confidence 0 00001111123444455666677777777765 223322 33333 2245555320 0 111111 11234
Q ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhCCCCcchHHh
Q psy10329 443 DLQALLMSFYKLLVLHGIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINE 522 (606)
Q Consensus 443 ~i~~IL~~~~~lL~~~~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~ 522 (606)
.+.++++.+.+.+..+.+.+.+..-.++++..++|..+||.|..+..-..|+.|-++.+|.+.+.+||+.+|. ..+..
T Consensus 1260 ~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~~i--~~~~~ 1337 (1463)
T COG5022 1260 KLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREFEI--SDVDE 1337 (1463)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhhcc--cchHH
Confidence 5567799999999999999999999999999999999999999999999999999999999999999999998 67899
Q ss_pred hchhHHHHHhhhhccC-chhhHHHHHhhcccCCHHHHHHHHhcCCCC----CCCchHHhhhhhhh
Q psy10329 523 QLSPLIQASQLLQARK-TQEDVNTVCEMCNKMSTNQLESLENELNRA----RTENADLRHVMLKE 582 (606)
Q Consensus 523 ~L~pL~QAaqLLQ~~K-T~~D~~si~~~C~~Ln~~QL~kIL~~Y~p~----rV~~~fI~~v~~~~ 582 (606)
+|++++|++..+|..+ ++.+++.+.+.|.+|||+|+.+++..|.|. .+|.++..++.+..
T Consensus 1338 ~l~~l~q~~k~~~~~~~dl~~~~~~~~~~~~l~~~~~~~L~~~y~~~~~e~~l~ke~~~~~~a~~ 1402 (1463)
T COG5022 1338 ELEELIQAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALL 1402 (1463)
T ss_pred HHHHHHhhhhhhhhhhCCHHHHHHHHHHHHhcCHHHHHHHHHhhhhhcccCCChHHHHHHHhhhh
Confidence 9999999999999999 999999999999999999999999999998 78998875554443
No 4
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.69 E-value=0.086 Score=56.20 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=113.3
Q ss_pred HHHHHHHhhhhcCC-----h----HHHHHHHHH-HHHHHHHHHHhhcCCccc-------chhHHHhHHHHHHHHhhhccc
Q psy10329 297 IFFMCVRHTDYIND-----E----EKVRCLLSA-IILNVKRVVKKRYEDLDS-------TILWLTNLLRLLNLLKQYSGE 359 (606)
Q Consensus 297 iLfmciR~ad~~~d-----~----~~l~~LL~~-ii~~Ik~vv~~~~~Dl~~-------lafWLSN~~eLL~fLkq~s~~ 359 (606)
.+..|+.|.+.... + .-+..||.+ +...|++.+.+. ..+.. +.||-..+.+|-.++.+-.+.
T Consensus 44 fi~~~~~F~~~~~~~~~eid~~v~ks~d~lL~~~l~~~L~~~i~~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~ 122 (311)
T PF04091_consen 44 FIEKCYKFSDDLYQSSTEIDDIVRKSLDRLLTRVLNGSLKSKIRSS-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGI 122 (311)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCC
Confidence 34566666655433 2 233445555 444566666655 34444 445555555555555443322
Q ss_pred ccccccchhhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCCCCCCCCCC
Q psy10329 360 KAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRLGRSESVGS 439 (606)
Q Consensus 360 ~~f~~~nt~~Qn~~~L~~fdl~E~~~~L~dLi~~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~kR~~s~~~ 439 (606)
..... .+..+ .....+.+.-..+...++..+..++...+ .+-+++=.|... ++.
T Consensus 123 ~~~~~------~~~~l------~a~~~f~~~r~~Ae~~I~~lv~~KIDe~l--ela~yDW~~~~~------------~~~ 176 (311)
T PF04091_consen 123 PQSAG------GHIRL------KATKMFKDARKAAEKRIFELVNSKIDEFL--ELAEYDWTPTEP------------PGE 176 (311)
T ss_dssp ---------------------------S---TTHHHHHHHHHHHHHHHHHH--TT--TT--------------------S
T ss_pred Cccch------HhHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcccceecCCC------------CCC
Confidence 11000 00111 12234455556777778888888888854 444444222110 011
Q ss_pred CcccHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHhhhHHHHHHHhhcC-cccccchhhHHHhchhHHHHHHHhC---
Q psy10329 440 SPGDLQALLMSFYKLLV--LHGIDMEIINQVFKQLYYYIGASSLNNLLLRK-ELCHWTRGMQIRYNLSHLEQFTRDN--- 513 (606)
Q Consensus 440 s~~~i~~IL~~~~~lL~--~~~V~p~Li~QlFsQLF~fIna~lFN~LLlrk-~~cswskG~QIR~NLS~LEeW~r~~--- 513 (606)
+..-+.++...+-.++. ...+++.+..-++...|.+|+..+.+-|+... +..+-.--.++...|..+|.++++.
T Consensus 177 ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~ 256 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPVP 256 (311)
T ss_dssp --HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SSS
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCc
Confidence 22345555444444442 47899999999999999999999999987554 4455555578889999999999988
Q ss_pred CCCcchHHhhchhHHHHHhhhhccC--chhhHHHHHhhcccCCHHHHHHHHhcCC
Q psy10329 514 KMADGEINEQLSPLIQASQLLQARK--TQEDVNTVCEMCNKMSTNQLESLENELN 566 (606)
Q Consensus 514 gL~~~~a~~~L~pL~QAaqLLQ~~K--T~~D~~si~~~C~~Ln~~QL~kIL~~Y~ 566 (606)
|...+....+|..++|.+.||.... +..|......-.+.++|..+..||.+|+
T Consensus 257 ~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 257 GNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp S--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 2223567889999999999999876 4455555556689999999999998875
No 5
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=92.14 E-value=2.8 Score=47.35 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhccCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhc
Q psy10329 380 FREYRQVLSDTGVWIYQAVVRFMEEKINSIVI-PAILEFESIPVMSSGKPSRLGRSESVGSSPGDLQALLMSFYKLLVLH 458 (606)
Q Consensus 380 l~E~~~~L~dLi~~iy~~li~~i~k~L~~liv-pAiLe~esi~g~~~~k~~g~kR~~s~~~s~~~i~~IL~~~~~lL~~~ 458 (606)
...|.....+....+-+.+++.++..+++..- ...... +..+. ....+++.+......+|...+..|+..
T Consensus 304 i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~---~~~~~------~~~~~~S~el~~~L~~L~~~L~~L~~~ 374 (494)
T PF04437_consen 304 ISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSI---ESPSD------SSPLSPSPELVPALSLLRSRLSFLERS 374 (494)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT----------------------GGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCc---ccccc------cccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666777777777777543 222111 10000 000111112344556699999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHHHHhhhhccC
Q psy10329 459 GIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARK 538 (606)
Q Consensus 459 ~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqLLQ~~K 538 (606)
+++.....+...+..-|+..+|+.++.+. -.+..-|.|+.+=+..|-..... .......++..+.+++.||.++.
T Consensus 375 -L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L~~~~~~---~~~~p~~~f~~l~E~~~LL~L~~ 449 (494)
T PF04437_consen 375 -LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRALFSVFSQ---YTPRPEAFFKRLREACKLLNLPY 449 (494)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHHHTTS-----TTSGG-HHHHHHHHHHHHHGGGG
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHHHHHHHh---hccCHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999987 58888999999888777666665 23445688999999999999876
Q ss_pred -chh--------------hHHHHHhh--cccCCHHHHHHHHh
Q psy10329 539 -TQE--------------DVNTVCEM--CNKMSTNQLESLEN 563 (606)
Q Consensus 539 -T~~--------------D~~si~~~--C~~Ln~~QL~kIL~ 563 (606)
+.. ++..+.+. -..|++.++.++|.
T Consensus 450 ~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 450 GSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp -CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred cchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 322 12222222 36788888888775
No 6
>KOG1892|consensus
Probab=86.92 E-value=0.51 Score=56.19 Aligned_cols=41 Identities=15% Similarity=0.384 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhccC
Q psy10329 3 CLLSAIILNVKRVVKKRYEDLDSTILWLTNLLRLLNLLKQY 43 (606)
Q Consensus 3 ~l~~~~~~~ik~~~k~~~~d~~~~~~wl~n~~~l~~~l~qy 43 (606)
.+++.+++.++.|+.+...+--.++|||+|+--|+|.+||-
T Consensus 596 ~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~D 636 (1629)
T KOG1892|consen 596 AFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQD 636 (1629)
T ss_pred HHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhc
Confidence 57889999999999999888779999999999999999985
No 7
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=85.61 E-value=6.3 Score=40.05 Aligned_cols=111 Identities=25% Similarity=0.335 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhccCCCcchhhccCchhhhhhhhcccCchHHHHHhHHhHHhhHHHHHHH
Q psy10329 9 ILNVKRVVKKRYEDLDSTILWLTNLLRLLNLLKQYSGEKAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVQLESEVDEL 88 (606)
Q Consensus 9 ~~~ik~~~k~~~~d~~~~~~wl~n~~~l~~~l~qysg~~~~~~~nt~~qn~~~l~nfdl~e~rq~lsdl~~~le~~l~~~ 88 (606)
+.+.+.+++...--++.....+.|. .||.+|+. ..|..+| ..|......+|.+
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NL----eLl~~~g~-naW~~~n------------------~~Le~~~~~le~~---- 151 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENL----ELLSKYGE-NAWLIHN------------------EQLEAMLKRLEKE---- 151 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhH-HHHHHHH------------------HHHHHHHHHHHHH----
Confidence 4556666666555566666555553 57888875 4666665 2333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 89 KTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
+.+++.+|+.+...-...|.-... .=..|...-..++..|++++-....++
T Consensus 152 -------l~~~k~~ie~vN~~RK~~Q~~~~~----------------------~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 152 -------LAKLKKEIEEVNRERKRRQEEAGE----------------------ELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHhHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444666677766665554441111 112588899999999999999999999
Q ss_pred hhhHHHHHH
Q psy10329 169 ASKDENEIT 177 (606)
Q Consensus 169 ~~~~~~~l~ 177 (606)
.++..+|
T Consensus 203 --~ei~~l~ 209 (221)
T PF05700_consen 203 --QEIEQLK 209 (221)
T ss_pred --HHHHHHH
Confidence 9999998
No 8
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.09 E-value=23 Score=32.94 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=56.6
Q ss_pred HHhHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHH
Q psy10329 72 QVLSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKI 148 (606)
Q Consensus 72 q~lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (606)
.-++-..+++|.|+..++.+.. .++..+..||-+|-.+++..+.... .+ ..|+.
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~----------------------~~-~~L~~ 75 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKK----------------------EV-EELEQ 75 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HH-HHHHH
Confidence 4477788899999998777766 7888888888888888887755111 11 13778
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 149 EVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 149 e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
|+..|...+=.+-|-+-..+ +++.+||
T Consensus 76 el~~l~~ry~t~LellGEK~--E~veEL~ 102 (120)
T PF12325_consen 76 ELEELQQRYQTLLELLGEKS--EEVEELR 102 (120)
T ss_pred HHHHHHHHHHHHHHHhcchH--HHHHHHH
Confidence 88888776666655555555 5555555
No 9
>PF15058 Speriolin_N: Speriolin N terminus
Probab=71.80 E-value=6.9 Score=39.06 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHhcC
Q psy10329 144 HYLKIEVLKLVEENLKLKQALEVASASKDENEITRMIVEG 183 (606)
Q Consensus 144 ~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~~~ 183 (606)
..++|.|.||+.||=+||.+|..+. ++.+||+.|.+.
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLir---EN~eLksaL~ea 44 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIR---ENHELKSALGEA 44 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHh
Confidence 3589999999999999999998765 667888777554
No 10
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=71.22 E-value=26 Score=41.66 Aligned_cols=53 Identities=32% Similarity=0.368 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcch-hHHHHHHHHHHHhhhHHHHHHHh
Q psy10329 98 KYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDH-YLKIEVLKLVEENLKLKQALEVA 167 (606)
Q Consensus 98 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~l~~enl~l~e~~~~~ 167 (606)
.+.+....|.+||.-+|+-++- |.+-++++ .++|||.||..|.--|+-|+|.+
T Consensus 94 rll~dyselEeENislQKqvs~-----------------Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 94 RLLQDYSELEEENISLQKQVSV-----------------LKQSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred HHhhhhHHHHHHHHHHHHHHHH-----------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677889999999995532 11126665 69999999999887666555543
No 11
>KOG0995|consensus
Probab=71.09 E-value=38 Score=39.09 Aligned_cols=89 Identities=21% Similarity=0.231 Sum_probs=62.5
Q ss_pred HhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHH
Q psy10329 73 VLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLK 152 (606)
Q Consensus 73 ~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 152 (606)
.+...++.|++++.+ ....-..++.++....+|+++..+.+..+++..+. .+. +-..+.+
T Consensus 239 ~l~~~n~~l~e~i~e-~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k----~~~---------------~~~~l~~ 298 (581)
T KOG0995|consen 239 DLKKTNRELEEMINE-REKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK----KQH---------------MEKKLEM 298 (581)
T ss_pred HHHHHHHHHHHHHHH-HhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh----hHH---------------HHHHHHH
Confidence 367777888888875 33333667788888888999999999888776554 322 5556666
Q ss_pred HHHHhhhHHHHHHHhhhhhHHHHHHHHHhcC
Q psy10329 153 LVEENLKLKQALEVASASKDENEITRMIVEG 183 (606)
Q Consensus 153 l~~enl~l~e~~~~~~~~~~~~~l~~~~~~~ 183 (606)
+..|=-.-.++++.+. +++..|++++.++
T Consensus 299 l~~Eie~kEeE~e~lq--~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 299 LKSEIEEKEEEIEKLQ--KENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHhc
Confidence 6655555566777777 7778888777555
No 12
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=69.61 E-value=1.6e+02 Score=33.73 Aligned_cols=174 Identities=11% Similarity=0.142 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCCCCCCCCCCCcccHHHH---HHHHHHHHHhc
Q psy10329 382 EYRQVLSDTGVWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRLGRSESVGSSPGDLQAL---LMSFYKLLVLH 458 (606)
Q Consensus 382 E~~~~L~dLi~~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~kR~~s~~~s~~~i~~I---L~~~~~lL~~~ 458 (606)
.....+.++.....+.++..+-..|+|. ...+... +.-. + ..+..| +..++.-++.
T Consensus 357 ~~~~~~~~l~~~~~~~L~~~if~Dl~p~-~~~Lft~--------------~W~~----~-~~~~~I~~Ti~dY~~d~~~- 415 (566)
T PF06046_consen 357 ELMDGFDDLAKECCQYLLEEIFNDLKPH-FKKLFTK--------------KWYS----G-EAVDTICATIEDYLQDFQH- 415 (566)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHCTHHH-HCTTTSG--------------GGCT----S--HHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHhCcC--------------cCcC----c-chHHHHHHHHHHHHHHHHH-
Confidence 4556677788888888888888878774 2222100 1110 1 233444 4444444433
Q ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHhhcCccc-----ccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHHHHhh
Q psy10329 459 GIDMEIINQVFKQLYYYIGASSLNNLLLRKELC-----HWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQL 533 (606)
Q Consensus 459 ~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~c-----swskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqL 533 (606)
.+++.+...++..+...+=..-+..||.++--| .-.-+-+|+-....|.+-+.+.+. ...+...+..|..++.+
T Consensus 416 ~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~~-~~~~~~~~~~l~~l~~l 494 (566)
T PF06046_consen 416 YLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLGS-KSEVKSSFDVLEDLLEL 494 (566)
T ss_dssp CS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHTH-HHHHHHHHHHHHHHHHH
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccchHHHHHHHHHH
Confidence 589999999999999888888888888877545 455678999999999999998873 45566778888888888
Q ss_pred hhccC--c-hhhHHHHHhhcccCCHHHHHHHHhcCCCCCCCchHHhhhh
Q psy10329 534 LQARK--T-QEDVNTVCEMCNKMSTNQLESLENELNRARTENADLRHVM 579 (606)
Q Consensus 534 LQ~~K--T-~~D~~si~~~C~~Ln~~QL~kIL~~Y~p~rV~~~fI~~v~ 579 (606)
|-+.. . ..++.++...+|.++.-.|..||..=. -++.+-.+.+.
T Consensus 495 l~~~d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~--D~~r~~~~~il 541 (566)
T PF06046_consen 495 LRLEDPEMIKLEVSSLLQKYPDISEEHVEALLALRG--DLSRSEVKEIL 541 (566)
T ss_dssp H-HS-CCCHHHHHHHHHCC-TT--SHHHHHHHCT-T--T--HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcc--CCCHHHHHHHH
Confidence 84433 2 357788889999999999999994322 35555555544
No 13
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.43 E-value=1.3e+02 Score=29.24 Aligned_cols=106 Identities=22% Similarity=0.259 Sum_probs=65.0
Q ss_pred chHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhccCCCcchhhccCchhhhh-hhhc--ccCchHHHHHhHHhHH
Q psy10329 3 CLLSAIILNVKRVVKKRYEDLDSTILWLTNLLRLLNLLKQYSGEKAFQTDNTEVQNA-QCLA--NFDFREYRQVLSDTGV 79 (606)
Q Consensus 3 ~l~~~~~~~ik~~~k~~~~d~~~~~~wl~n~~~l~~~l~qysg~~~~~~~nt~~qn~-~~l~--nfdl~e~rq~lsdl~~ 79 (606)
.|-++|=.=+-+++..+|.| ...=-+--..+.+-+| +.|...|....-+ ..|+ |=.|--=++.-+.+-.
T Consensus 3 ~lA~~Ig~EfE~lId~~G~e--~v~~LmP~VV~vLE~L------e~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~ 74 (158)
T PF09744_consen 3 DLASSIGKEFERLIDRYGEE--AVKGLMPKVVRVLELL------ESLASRNQEHEVELELLREDNEQLETQYEREKELRK 74 (158)
T ss_pred HHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHHHH------HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666678999999887 6666666677777777 3333334322111 1111 1122222223455556
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 80 QLESEVDELKTRLM-NDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 80 ~le~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
+.|.++.+ ....| .+...+...|+.|+++|.+++..+
T Consensus 75 ~~e~~l~~-~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 75 QAEEELLE-LEDQWRQERKDLQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66777776 45566 788889999999999998887544
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.24 E-value=30 Score=41.19 Aligned_cols=77 Identities=25% Similarity=0.334 Sum_probs=40.4
Q ss_pred hHHhhHHHHHHHHHH--H-HHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHH
Q psy10329 77 TGVQLESEVDELKTR--L-MNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKL 153 (606)
Q Consensus 77 l~~~le~~l~~~~~~--~-~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 153 (606)
..+.+|.++++++.. . +.+.|.|...+..+|+++..+..-| ..|.-|+.++=..
T Consensus 567 ~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL-----------------------saEtriKldLfsa 623 (697)
T PF09726_consen 567 QIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL-----------------------SAETRIKLDLFSA 623 (697)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh-----------------------hHHHHHHHHHHHH
Confidence 344455555443332 1 1456666666666666666665522 1233344443332
Q ss_pred ----HHHhhhHHHHHHHhhhhhHHHHHHH
Q psy10329 154 ----VEENLKLKQALEVASASKDENEITR 178 (606)
Q Consensus 154 ----~~enl~l~e~~~~~~~~~~~~~l~~ 178 (606)
-.+-=.++.++-+.+ ++|.+||.
T Consensus 624 Lg~akrq~ei~~~~~~~~d--~ei~~lk~ 650 (697)
T PF09726_consen 624 LGDAKRQLEIAQGQLRKKD--KEIEELKA 650 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 222223455777888 99999993
No 15
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=63.73 E-value=42 Score=28.42 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLS 114 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~ 114 (606)
+.+..|+.+++.|+++|..++
T Consensus 18 eti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 667777777777777776654
No 16
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=63.59 E-value=6.6 Score=38.45 Aligned_cols=34 Identities=35% Similarity=0.443 Sum_probs=16.2
Q ss_pred HHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy10329 72 QVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 72 q~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (606)
..--+-+..||+||++ +|.|+.++|+|++|.-.+
T Consensus 10 N~AIERnalLE~ELdE--------KE~L~~~~QRLkDE~RDL 43 (166)
T PF04880_consen 10 NQAIERNALLESELDE--------KENLREEVQRLKDELRDL 43 (166)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHCH----------
T ss_pred HHHHHHhHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 3344567899999988 455555555555555443
No 17
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.24 E-value=75 Score=37.10 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhccCCCcchhhccCchhh---hh--hhhcccCchHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHH
Q psy10329 29 WLTNLLRLLNLLKQYSGEKAFQTDNTEVQ---NA--QCLANFDFREYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEI 103 (606)
Q Consensus 29 wl~n~~~l~~~l~qysg~~~~~~~nt~~q---n~--~~l~nfdl~e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~ 103 (606)
|.---.-=.+.++=||=.++-++.-...+ .. +----=|...|+..++++-..+|..=.+ .+....++++++.+|
T Consensus 374 ~~d~~rika~VIrG~~l~eal~~~~e~~~p~e~~~~~~~e~~ei~~~~~~i~~~~~~ve~l~~e-~~~L~~~~ee~k~ei 452 (652)
T COG2433 374 WKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEE-NSELKRELEELKREI 452 (652)
T ss_pred hhhHHHHHHHeecCCcHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 55444444455666665555554432222 11 1112245666666666665555433222 222225555566666
Q ss_pred HHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 104 QGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 104 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+.|+++.+....=....... .- .+. .++.+|.+|..+=.+=.+.++.|+ +++.+++++.
T Consensus 453 e~L~~~l~~~~r~~~~~~~~----~r-----------ei~-~~~~~I~~L~~~L~e~~~~ve~L~--~~l~~l~k~~ 511 (652)
T COG2433 453 EKLESELERFRREVRDKVRK----DR-----------EIR-ARDRRIERLEKELEEKKKRVEELE--RKLAELRKMR 511 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hH-----------HHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 66666655554422111111 00 011 155566666555444455666666 6666666443
No 18
>KOG1962|consensus
Probab=62.32 E-value=17 Score=37.15 Aligned_cols=22 Identities=36% Similarity=0.433 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVA 167 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~ 167 (606)
++.|..||..||=.||++++.-
T Consensus 191 ~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 191 LQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred cccHHHHHHHHHHHHHHHHhcc
Confidence 7778888888888888888753
No 19
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=62.07 E-value=1.5e+02 Score=31.44 Aligned_cols=82 Identities=12% Similarity=0.136 Sum_probs=65.4
Q ss_pred HHHHHHHHHhhhccCCCcchhhccCchhhhhhhhcccCchHHHHHhHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy10329 29 WLTNLLRLLNLLKQYSGEKAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVQLESEVDELKTRLM---NDREKYLSEIQG 105 (606)
Q Consensus 29 wl~n~~~l~~~l~qysg~~~~~~~nt~~qn~~~l~nfdl~e~rq~lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~ 105 (606)
+....-.|.++|.+--. +-..-+...=+++|+.+.-+.++.....+..+++..+.... .+...+.+.|++
T Consensus 129 it~~GA~LydlL~kE~~-------lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 129 ITQRGASLYDLLGKEVE-------LREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHhchHh-------HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888866552 33344455559999999999999999999999998666665 777889999999
Q ss_pred HHHhhHHhhHHh
Q psy10329 106 LQDKNIKLSECL 117 (606)
Q Consensus 106 l~~~~~~~~~~l 117 (606)
-+.|.++.++=|
T Consensus 202 kk~ELER~qKRL 213 (267)
T PF10234_consen 202 KKQELERNQKRL 213 (267)
T ss_pred HHHHHHHHHHHH
Confidence 999999999866
No 20
>KOG1853|consensus
Probab=61.16 E-value=82 Score=33.03 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=28.7
Q ss_pred CchHHHHHhHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhH
Q psy10329 66 DFREYRQVLSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNI 111 (606)
Q Consensus 66 dl~e~rq~lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~ 111 (606)
.|.||..+=.++--.+|+||+.++++.. .+...++.|.+++++..+
T Consensus 35 El~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 35 ELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777778888887777655 334444445554444443
No 21
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.96 E-value=73 Score=30.46 Aligned_cols=40 Identities=28% Similarity=0.273 Sum_probs=26.8
Q ss_pred hHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHh
Q psy10329 74 LSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~ 113 (606)
|.|-+..+|++|+..+...- .+.+..+++|+.|+++.+.+
T Consensus 22 le~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~l 64 (140)
T PF10473_consen 22 LEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEEL 64 (140)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777776555544 66677777777777766654
No 22
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=59.94 E-value=85 Score=31.49 Aligned_cols=36 Identities=19% Similarity=0.259 Sum_probs=25.9
Q ss_pred hHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 74 LSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
..|++++|+..|.+ +..|+..-++|++||.++..+.
T Consensus 43 m~evNrrlQ~hl~E--------IR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 43 MKEVNRRLQQHLNE--------IRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Confidence 55566655555554 8888888888899998887754
No 23
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=58.14 E-value=1.5e+02 Score=31.85 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=23.9
Q ss_pred chhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 143 DHYLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 143 ~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
+..|---+.+|+.|+-.|.++|.++. ..+...+
T Consensus 214 ~g~LDvRLkKl~~eke~L~~qv~klk--~qLee~~ 246 (302)
T PF09738_consen 214 DGSLDVRLKKLADEKEELLEQVRKLK--LQLEERQ 246 (302)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 33465668899999999988888777 5554444
No 24
>KOG0999|consensus
Probab=57.98 E-value=48 Score=38.15 Aligned_cols=54 Identities=33% Similarity=0.388 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcch-hHHHHHHHHHHHhhhHHHHHHHh
Q psy10329 97 EKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDH-YLKIEVLKLVEENLKLKQALEVA 167 (606)
Q Consensus 97 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~l~~enl~l~e~~~~~ 167 (606)
..+.++-..|.+||.-+|+..+- |.. + +++. .++|||.||+.|---|..++|..
T Consensus 166 ~RllseYSELEEENIsLQKqVs~-LR~-----------s-----QVEyEglkheikRleEe~elln~q~ee~ 220 (772)
T KOG0999|consen 166 ARLLSEYSELEEENISLQKQVSN-LRQ-----------S-----QVEYEGLKHEIKRLEEETELLNSQLEEA 220 (772)
T ss_pred HHHHHHHHHHHHhcchHHHHHHH-Hhh-----------h-----hhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999999985532 222 2 5554 69999999988765555555443
No 25
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=57.82 E-value=38 Score=33.56 Aligned_cols=97 Identities=21% Similarity=0.250 Sum_probs=38.8
Q ss_pred cCchHHHHHhHHhHHhh---HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccc
Q psy10329 65 FDFREYRQVLSDTGVQL---ESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLE 138 (606)
Q Consensus 65 fdl~e~rq~lsdl~~~l---e~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 138 (606)
-||++.+..-++++-+| ..+++.++.... ..+..++.++..|+.+...+...|...=
T Consensus 81 ~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~----------------- 143 (194)
T PF08614_consen 81 EELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKN----------------- 143 (194)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred ccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 57888887755544333 333333222222 4555666666666655555544332210
Q ss_pred cCCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH-HHHhc
Q psy10329 139 SITPDHYLKIEVLKLVEENLKLKQALEVASASKDENEIT-RMIVE 182 (606)
Q Consensus 139 ~~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~-~~~~~ 182 (606)
..-..++-|+.-|.-++--+.+++.+++ ++.++|- +.+.+
T Consensus 144 --k~~e~l~DE~~~L~l~~~~~e~k~~~l~--~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 144 --KANEILQDELQALQLQLNMLEEKLRKLE--EENRELVERWMQR 184 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 1112366677777777777777777777 7777766 44433
No 26
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=56.98 E-value=81 Score=33.90 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 144 HYLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 144 ~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
+.|.+|+.+-+.+|...+|++..+- .++..++
T Consensus 216 a~LseELa~k~Ee~~rQQEEIt~Ll--sqivdlQ 247 (306)
T PF04849_consen 216 ASLSEELARKTEENRRQQEEITSLL--SQIVDLQ 247 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4599999999999999999999999 8888888
No 27
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=55.68 E-value=36 Score=39.99 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=46.3
Q ss_pred chHHHHHhHHhHHhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCcccc
Q psy10329 67 FREYRQVLSDTGVQLESEVDELKTRLM-------NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLES 139 (606)
Q Consensus 67 l~e~rq~lsdl~~~le~~l~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 139 (606)
+...++-+..+..+++.+++. ..... +.+.++...+++++++.....++|. ++.. +-.
T Consensus 89 ~~~L~kElE~L~~qlqaqv~~-ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe-~lqs----dk~--------- 153 (617)
T PF15070_consen 89 AEHLRKELESLEEQLQAQVEN-NEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLE-QLQS----DKA--------- 153 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcc----cch---------
Confidence 344455666666666655443 22211 4444555566666666666666553 2222 111
Q ss_pred CCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 140 ITPDHYLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 140 ~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
-++|.++.|.+|++++..+. ....+|.
T Consensus 154 ---------t~SRAlsQN~eLK~QL~Elq--~~Fv~lt 180 (617)
T PF15070_consen 154 ---------TASRALSQNRELKEQLAELQ--DAFVKLT 180 (617)
T ss_pred ---------HHHHHHHhHHHHHHHHHHHH--HHHHHHH
Confidence 26777777777777777666 5544444
No 28
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=55.54 E-value=24 Score=36.78 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=31.7
Q ss_pred HHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhH
Q psy10329 71 RQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 71 rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
|+=|+.-+..||.|+.. ...++.+++.||+.|+.+|.+|=+
T Consensus 88 RDRFR~Rn~ELE~elr~----~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRK----QQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33377777788887765 237789999999999999998755
No 29
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=55.04 E-value=1.4e+02 Score=26.37 Aligned_cols=83 Identities=29% Similarity=0.336 Sum_probs=48.4
Q ss_pred hHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHH
Q psy10329 68 REYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLK 147 (606)
Q Consensus 68 ~e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (606)
..|++.+..-+ ....-+++ --+..++..++..+++.|+.+.....+-+.+.... .. .-..+.
T Consensus 12 e~v~~~l~~R~-~~~~~vd~-i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~----~~------------~~~~l~ 73 (108)
T PF02403_consen 12 EEVRENLKKRG-GDEEDVDE-IIELDQERRELQQELEELRAERNELSKEIGKLKKA----GE------------DAEELK 73 (108)
T ss_dssp HHHHHHHHHTT-CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT----TC------------CTHHHH
T ss_pred HHHHHHHHHcC-CCHhhHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC----cc------------cHHHHH
Confidence 34445554433 34444554 44445667778888888888888887777666544 11 112366
Q ss_pred HHHHHHHHHhhhHHHHHHHhh
Q psy10329 148 IEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 148 ~e~~~l~~enl~l~e~~~~~~ 168 (606)
.|+..+..+=-++.+++..++
T Consensus 74 ~e~~~lk~~i~~le~~~~~~e 94 (108)
T PF02403_consen 74 AEVKELKEEIKELEEQLKELE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555555555
No 30
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=54.73 E-value=64 Score=34.68 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10329 92 LMNDREKYLSEIQGLQ 107 (606)
Q Consensus 92 ~~~~~~~~~~~~~~l~ 107 (606)
+++++..|.++|-+++
T Consensus 232 QQEEIt~LlsqivdlQ 247 (306)
T PF04849_consen 232 QQEEITSLLSQIVDLQ 247 (306)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3355555555555544
No 31
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.37 E-value=1.1e+02 Score=25.91 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
+.+.=+.-||+.|+++|..+++
T Consensus 18 dTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHH
Confidence 7788888899999999887655
No 32
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.14 E-value=91 Score=27.04 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
+.+.=++.||+.|+++|..+.+
T Consensus 18 dtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7789999999999999988876
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=52.28 E-value=1.1e+02 Score=32.73 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
.+++++++++..+..+.+..++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~ 230 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKK 230 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555553333
No 34
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.61 E-value=71 Score=34.29 Aligned_cols=31 Identities=29% Similarity=0.410 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
.++.+......|.-.++-+++... ..+.+|+
T Consensus 103 ~~~~~l~~~~~e~~sl~~q~~~~~--~~L~~L~ 133 (314)
T PF04111_consen 103 ELQLELIEFQEERDSLKNQYEYAS--NQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 355555555555555555555555 5555555
No 35
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=51.32 E-value=1.6e+02 Score=30.79 Aligned_cols=34 Identities=12% Similarity=0.151 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
++.++.+...|+-+|..---.|+ .+|..||++|.
T Consensus 274 l~~~~~~~~~ey~~Ll~~K~~Ld--~EIatYR~LLE 307 (312)
T PF00038_consen 274 LREEMARQLREYQELLDVKLALD--AEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHh
Confidence 45555555556666666555667 88888888773
No 36
>PRK05560 DNA gyrase subunit A; Validated
Probab=50.37 E-value=1.1e+02 Score=37.20 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=64.7
Q ss_pred hhcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHH----H--hhHHhhHHhhhhccCCccC
Q psy10329 61 CLANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQGLQ----D--KNIKLSECLSKTYSTDVSH 127 (606)
Q Consensus 61 ~l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~~l~----~--~~~~~~~~l~~~~~~~~~~ 127 (606)
.++-++|.++-+. +.-+.+..+-+|+.++.+.| +-+...-..++..- . ..+...+.|...+..
T Consensus 336 ~~~~~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~l~g~~~~~~~~d~vI~iir~s~~~~~~~~~L~~~f~~---- 411 (805)
T PRK05560 336 QPKLLNLKEILEAFLEHRKEVITRRTRFELRKAEERAHILEGLLIALDNIDEVIALIRASPTPAEAKEGLMERFGL---- 411 (805)
T ss_pred EeEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHhcCC----
Confidence 4566666665554 33344566666666666666 33333333322222 1 222344555555555
Q ss_pred CCCCCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 128 TQDSSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
+.. +.++.|.--+.+||. |-..|+++.+.+. +++++|+.+|.
T Consensus 412 ~~~----------qa~~IL~m~L~~LT~~e~~kL~~E~~~l~--~ei~~l~~iL~ 454 (805)
T PRK05560 412 SEI----------QAQAILDMRLQRLTGLERDKIEDEYKELL--ALIADLKDILA 454 (805)
T ss_pred CHH----------HHHHHHHhHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHhC
Confidence 433 788899999999997 6667999999999 88888885553
No 37
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=49.68 E-value=1.2e+02 Score=36.65 Aligned_cols=102 Identities=11% Similarity=0.164 Sum_probs=65.8
Q ss_pred hcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHH----HhhHHhhHHhhhhccCCccCCCC
Q psy10329 62 LANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQGLQ----DKNIKLSECLSKTYSTDVSHTQD 130 (606)
Q Consensus 62 l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~~l~----~~~~~~~~~l~~~~~~~~~~~~~ 130 (606)
++-++|.+.-+. +.-+.+..|-+|+.++.+.| +-+-..-..++..- ...+ .++.|.+.+.. +..
T Consensus 347 p~~~~l~~il~~f~~~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s~~-ak~~l~~~f~~----~~~ 421 (742)
T PRK05561 347 PRVKGLKEILSEWLDHRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRESDE-PKANLMARFDL----SEI 421 (742)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCcc-HHHHHHHHhCC----CHH
Confidence 455677655544 44455777788877777777 55444444444443 2222 34444444555 333
Q ss_pred CCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 131 SSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+.++.|.--+.+||. |-.+|+++.+.+. +++.+|+.+|
T Consensus 422 ----------qa~~Il~m~L~~Lt~le~~kl~~E~~~l~--~ei~~l~~iL 460 (742)
T PRK05561 422 ----------QAEAILELRLRRLAKLEEIEIRKEQDELR--KEIAELEAIL 460 (742)
T ss_pred ----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 788999999999997 5557888888888 8888888554
No 38
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=49.26 E-value=1.4e+02 Score=33.10 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=55.2
Q ss_pred ccCchHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcc
Q psy10329 64 NFDFREYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPD 143 (606)
Q Consensus 64 nfdl~e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (606)
.|.|.+.+..|..+--.++.--.+ ++...-|.++.++|++..+.|.+.-++-+.+. - +--
T Consensus 73 Vfqlddi~~qlr~~rtel~~a~~~-k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a--------------~-----~n~ 132 (499)
T COG4372 73 VFQLDDIRPQLRALRTELGTAQGE-KRAAETEREAARSELQKARQEREAVRQELAAA--------------R-----QNL 132 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-----HHH
Confidence 466666666665444444332222 22222667777788888877776555422211 0 122
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 144 HYLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 144 ~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
...++|+.|++...-+|+..+..+. ++-++|-
T Consensus 133 ~kAqQ~lar~t~Q~q~lqtrl~~l~--~qr~ql~ 164 (499)
T COG4372 133 AKAQQELARLTKQAQDLQTRLKTLA--EQRRQLE 164 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3478889999988888888888777 6655554
No 39
>PRK13979 DNA topoisomerase IV subunit A; Provisional
Probab=48.65 E-value=75 Score=39.33 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=71.0
Q ss_pred hhhcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHH----HHhh--HHhhHHhhhhccCCcc
Q psy10329 60 QCLANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQGL----QDKN--IKLSECLSKTYSTDVS 126 (606)
Q Consensus 60 ~~l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~~l----~~~~--~~~~~~l~~~~~~~~~ 126 (606)
..++-+.|.++-+. +.-+.+..+-+|+.++.|.| +-+......|++. +... ...++.|...+..
T Consensus 351 ~~p~~~~l~~il~~~~~~r~~~~~rr~~~~l~k~~~r~~i~eGl~~a~~~id~vi~~ir~s~~~~~a~~~l~~~f~~--- 427 (957)
T PRK13979 351 GKPETMGLKTMLKHYVEHQKEVVTRRTKKELEIAEKRFHIVEGFIKAIGIMDEIIKTIRSSKSKKDASENLIEKFGF--- 427 (957)
T ss_pred CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHhCC---
Confidence 35666777776655 34455777888888788888 6565555554443 2222 1344445555555
Q ss_pred CCCCCCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 127 HTQDSSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+.. ++++.|.--+.|||. |-.+|+++.+.+. +++.+|+.+|
T Consensus 428 -s~~----------qa~aIl~mrL~~Lt~le~~kl~~E~~eL~--~~I~~l~~iL 469 (957)
T PRK13979 428 -TDE----------QAEAILELMLYRLTGLEIVAFEKEYKELE--KLIKKLTKIL 469 (957)
T ss_pred -CHH----------HHHHHHhCcHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 444 888998888999987 8888999999888 8888888554
No 40
>PRK10884 SH3 domain-containing protein; Provisional
Probab=48.21 E-value=65 Score=32.64 Aligned_cols=28 Identities=39% Similarity=0.345 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 148 IEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 148 ~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
+++..|..||-.|+++++.+. .+...++
T Consensus 132 ~~~~~L~~~n~~L~~~l~~~~--~~~~~l~ 159 (206)
T PRK10884 132 SVINGLKEENQKLKNQLIVAQ--KKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 345555556666666655555 4444444
No 41
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=47.88 E-value=2.3e+02 Score=27.71 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
.+...++.+.++|+.|.+++.+
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655
No 42
>smart00338 BRLZ basic region leucin zipper.
Probab=46.59 E-value=45 Score=27.05 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
|..++..|..+|-+|+.+++.+. .++..|+..+
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~--~e~~~lk~~~ 63 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLR--RELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 78888999999999999999999 8888877443
No 43
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=45.49 E-value=1.3e+02 Score=36.14 Aligned_cols=102 Identities=12% Similarity=0.139 Sum_probs=66.9
Q ss_pred cccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHH----HHHHHhhHHhhHHhhhhccCCccCCCCC
Q psy10329 63 ANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEI----QGLQDKNIKLSECLSKTYSTDVSHTQDS 131 (606)
Q Consensus 63 ~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~----~~l~~~~~~~~~~l~~~~~~~~~~~~~~ 131 (606)
+-++|.+.-+. +.-+.+..+-.|+.++.+.| +-+-..-..| +=++++.+ -++.|...+.. +..
T Consensus 335 ~~~~l~~il~~~~~~R~~~~~rR~~~~l~k~~~rl~il~Gl~ia~~~iDevI~iIR~s~~-~k~~L~~~f~l----s~~- 408 (735)
T TIGR01062 335 AVKNLLEILQEWLVFRRNTVIRRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIREEDE-PKTILMERFKL----SAI- 408 (735)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcChh-hHHHHHHhcCC----CHH-
Confidence 34555554444 34445667777777677777 4443333333 33344443 34555555666 444
Q ss_pred CccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 132 SSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 132 ~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
+.++.|.--+++|+. |-.+++++.+.+. +++++|+++|.
T Consensus 409 ---------QaeaIL~mrL~~L~~le~~~i~~E~~~l~--~e~~~l~~~L~ 448 (735)
T TIGR01062 409 ---------QAEAILNLRLRHLAKLEEHAIIDEQSELE--KERAILEKILK 448 (735)
T ss_pred ---------HHHHHHHhHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHhC
Confidence 899999999999987 8889999999999 99999886653
No 44
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=44.89 E-value=34 Score=30.05 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=15.5
Q ss_pred HHHHHHHHhhhHHHHHHHhh
Q psy10329 149 EVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 149 e~~~l~~enl~l~e~~~~~~ 168 (606)
|++|-..||..|+|++..+.
T Consensus 45 evtr~A~EN~rL~ee~rrl~ 64 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQ 64 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58888899999988765544
No 45
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.23 E-value=2.8e+02 Score=26.11 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHhhhHHHHH
Q psy10329 143 DHYLKIEVLKLVEENLKLKQAL 164 (606)
Q Consensus 143 ~~~~~~e~~~l~~enl~l~e~~ 164 (606)
..-..||+.|-..|.-.|++++
T Consensus 128 ~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 128 KTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3346677777766666666654
No 46
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=44.16 E-value=1.3e+02 Score=36.42 Aligned_cols=104 Identities=11% Similarity=0.084 Sum_probs=65.1
Q ss_pred hhcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHH----Hhh--HHhhHHhhhhccCCccC
Q psy10329 61 CLANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQGLQ----DKN--IKLSECLSKTYSTDVSH 127 (606)
Q Consensus 61 ~l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~~l~----~~~--~~~~~~l~~~~~~~~~~ 127 (606)
.++-+++.++-+. +.-+.+..+-+|..++.+.| +-+...-..++..- ... +...+.|.+.+..
T Consensus 333 ~~~~~~~~~il~~~~~~r~~~~~~r~~~~l~~~~~~~~~~~g~~~~~~~~d~vi~~ir~~~~~~~~~~~L~~~~~~---- 408 (800)
T TIGR01063 333 LPKVLNLKELLEAFVEHRKDVITRRTIFELRKAEERAHILEGLLIALDNIDEVIALIRASQNTEEAKTRLVERFSL---- 408 (800)
T ss_pred EeeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHhcCC----
Confidence 4556666666555 33444666777777777776 44444333333332 221 2344555555554
Q ss_pred CCCCCccCccccCCcchhHHHHHHHHHHH-hhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 128 TQDSSSTTSLESITPDHYLKIEVLKLVEE-NLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~e-nl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
++. +.++.+.--+.+||.+ -.+|+++.+.+. +++++|+.+|
T Consensus 409 ~~~----------qa~~il~m~L~~Lt~~e~~kl~~e~~~l~--~ei~~l~~iL 450 (800)
T TIGR01063 409 SEI----------QAQAILDMRLQRLTGLEREKLQEEYKELL--ELIADLEDIL 450 (800)
T ss_pred CHH----------HHHHHHHhHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 333 7888899999999974 456888999998 8888888555
No 47
>PRK10884 SH3 domain-containing protein; Provisional
Probab=44.05 E-value=1.5e+02 Score=30.13 Aligned_cols=30 Identities=20% Similarity=0.209 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
|+.|-.+|..|.-.++.+++.++ .++..++
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~--~~~~~~~ 166 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAAN--LQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 55555566556666666666555 4544444
No 48
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=44.02 E-value=2.4e+02 Score=26.24 Aligned_cols=30 Identities=33% Similarity=0.557 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhHH---HHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLK---QALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~---e~~~~~~~~~~~~~l~ 177 (606)
+..||.+|+.+|=.++ .++..+. .++..|.
T Consensus 49 l~~Eiv~l~~~~e~~~~~~~~~~~L~--~el~~l~ 81 (120)
T PF12325_consen 49 LREEIVKLMEENEELRALKKEVEELE--QELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 7778999988885543 3445555 5555554
No 49
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=43.62 E-value=72 Score=32.27 Aligned_cols=55 Identities=25% Similarity=0.384 Sum_probs=43.4
Q ss_pred hhcccCc-------hHHHHHhHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHH
Q psy10329 61 CLANFDF-------REYRQVLSDTG-VQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSEC 116 (606)
Q Consensus 61 ~l~nfdl-------~e~rq~lsdl~-~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (606)
-...||| ..|.+.+.+-- +.|+.-|++ -...|++++.+..||..|++||..++.+
T Consensus 92 ~~eA~DLm~~e~Pse~YWk~lAE~RR~AL~eaL~E-Ne~Lh~~ie~~~eEi~~lk~en~~L~el 154 (200)
T PF07412_consen 92 TIEAEDLMSSEGPSENYWKELAEERRKALEEALEE-NEKLHKEIEQKDEEIAKLKEENEELKEL 154 (200)
T ss_dssp ---CCCCC-SSSCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred cccHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457898 56878876654 567888998 7788899999999999999999998873
No 50
>KOG0994|consensus
Probab=43.54 E-value=67 Score=40.12 Aligned_cols=84 Identities=21% Similarity=0.218 Sum_probs=54.2
Q ss_pred chHHHHHhHHhHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchh
Q psy10329 67 FREYRQVLSDTGVQLESEVDELKTRLM-NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHY 145 (606)
Q Consensus 67 l~e~rq~lsdl~~~le~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (606)
|.+.|.+|++.++..|. -++. +..++|+.+|+++++..-+..+-|+-.... .+.+. ..=..
T Consensus 1210 l~~ir~il~~~svs~~~------i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~-------~~~a~-----~~Les 1271 (1758)
T KOG0994|consen 1210 LEEIRAILSAPSVSAED------IAQLASATESLRRQLQALTEDLPQEEETLSDITNS-------LPLAG-----KDLES 1271 (1758)
T ss_pred HHHHHHHhcCCCccHHH------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhc-------cchhh-----hhHHH
Confidence 55666666666665552 1122 567788888888888887777755543222 11122 23345
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
||.|...|+.-..+|+|+++++.
T Consensus 1272 Lq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1272 LQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888888888888888776
No 51
>KOG4643|consensus
Probab=43.02 E-value=1.7e+02 Score=36.34 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=52.7
Q ss_pred HHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHhhHHhhhhccC-----CccC-CCCCCccCccccCCcchhHH
Q psy10329 78 GVQLESEVDELKTRLM----NDREKYLSEIQGLQDKNIKLSECLSKTYST-----DVSH-TQDSSSTTSLESITPDHYLK 147 (606)
Q Consensus 78 ~~~le~~l~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~ 147 (606)
++.|+.||++ +.+.- ++++.+..|+++|+.|++..... +..... |..| ..+-.++.--|.+..-.+++
T Consensus 186 ir~LrqElEE-K~enll~lr~eLddleae~~klrqe~~e~l~e-a~ra~~yrdeldalre~aer~d~~ykerlmDs~fyk 263 (1195)
T KOG4643|consen 186 IRTLRQELEE-KFENLLRLRNELDDLEAEISKLRQEIEEFLDE-AHRADRYRDELDALREQAERPDTTYKERLMDSDFYK 263 (1195)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHH
Confidence 4556666665 54433 67777777777777766633210 000000 0000 00101111112222233467
Q ss_pred HHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 148 IEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 148 ~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
--+.-|-..|--|.|.-++++ +++.+||
T Consensus 264 dRveelkedN~vLleekeMLe--eQLq~lr 291 (1195)
T KOG4643|consen 264 DRVEELKEDNRVLLEEKEMLE--EQLQKLR 291 (1195)
T ss_pred HHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 777888888999999999999 9999988
No 52
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=41.93 E-value=1.8e+02 Score=29.33 Aligned_cols=29 Identities=34% Similarity=0.299 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEI 176 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l 176 (606)
|-.+|-.|-.||..+....+.+- +....|
T Consensus 100 L~~~i~~Lqeen~kl~~e~~~lk--~~~~eL 128 (193)
T PF14662_consen 100 LVAEIETLQEENGKLLAERDGLK--KRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHhHHHHhhhhHH--HHHHHH
Confidence 44555556666666655555555 444444
No 53
>KOG4460|consensus
Probab=40.35 E-value=2.5e+02 Score=32.70 Aligned_cols=127 Identities=14% Similarity=0.130 Sum_probs=70.9
Q ss_pred hhhccCCCcchhhccCchhh--hhhhhcccCc--hHHHHHhHHhHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHH
Q psy10329 38 NLLKQYSGEKAFQTDNTEVQ--NAQCLANFDF--REYRQVLSDTGVQLESEVDELKTRLMNDREK-------YLSEIQGL 106 (606)
Q Consensus 38 ~~l~qysg~~~~~~~nt~~q--n~~~l~nfdl--~e~rq~lsdl~~~le~~l~~~~~~~~~~~~~-------~~~~~~~l 106 (606)
+-+--.+.+|.|..-|...| .+|-++--|+ .|+.+-...+.++++.|+|.++ ...++++. +-..+++.
T Consensus 550 ~~~SsP~~~E~~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~QlQ~l~-~~~eer~~i~e~a~~La~R~eea 628 (741)
T KOG4460|consen 550 KASSAPPPEECLQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQLQDLS-YCREERKSLREMAERLADRYEEA 628 (741)
T ss_pred ccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444556655553333 4555555555 3455557888899999998843 33333332 33333444
Q ss_pred HHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHH
Q psy10329 107 QDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVASASKDENE 175 (606)
Q Consensus 107 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~ 175 (606)
.+.-+-+.+++.+-++.--+|-|. . ...|--.++|+.++-.+--.|+--+|.+. +..+|
T Consensus 629 ~e~qe~L~~~~~~L~~~~~~~lp~----l----~~AErdFk~Elq~~~~~~~~L~~~iET~~--~~~~K 687 (741)
T KOG4460|consen 629 KEKQEDLMNRMKKLLHSFHSELPV----L----SDAERDFKKELQLIPDQLRHLGNAIETVT--MKKDK 687 (741)
T ss_pred HHhHHHHHHHHHHHHhcccccCCc----c----hhHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHH
Confidence 333333444444444442233333 1 14555689999888777778888888877 65555
No 54
>KOG0804|consensus
Probab=40.31 E-value=1.7e+02 Score=33.05 Aligned_cols=15 Identities=7% Similarity=-0.150 Sum_probs=5.7
Q ss_pred HHHhhhHHHHHHHhh
Q psy10329 154 VEENLKLKQALEVAS 168 (606)
Q Consensus 154 ~~enl~l~e~~~~~~ 168 (606)
...+-...+++..+.
T Consensus 427 ~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 427 KEALGSKDEKITDLQ 441 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 55
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=40.17 E-value=2.2e+02 Score=32.18 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=61.9
Q ss_pred hhcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhh---HHhhHHhhhhc---cCCccC
Q psy10329 61 CLANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQGLQDKN---IKLSECLSKTY---STDVSH 127 (606)
Q Consensus 61 ~l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~~l~~~~---~~~~~~l~~~~---~~~~~~ 127 (606)
.++-|.+.+.-+. +.-+.+..+-+|..++.+.| +.+...-..|..+.+.. +..++.|.+.+ ..
T Consensus 311 ~p~~~~l~~iL~~f~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~~id~vi~~ir~s~~ak~~L~~~l~~~~~---- 386 (445)
T cd00187 311 RPKKLNLKEILQEFLDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNIDEVINLIRSSDEAKKALIEELEKLGF---- 386 (445)
T ss_pred eeEEeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCC----
Confidence 3445555554443 33334666777766666666 33333333333221111 23344444444 33
Q ss_pred CCCCCccCccccCCcchhHHHHHHHHHHHh-hhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 128 TQDSSSTTSLESITPDHYLKIEVLKLVEEN-LKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~en-l~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+.. +.++.|.--+.+||.+. .+|+++.+.+. +++++|++.+
T Consensus 387 ~~~----------qa~~IL~m~L~~LT~~e~~kL~~E~~~l~--~ei~~l~~~l 428 (445)
T cd00187 387 SEI----------QADAILDMRLRRLTKLEREKLLKELKELE--AEIEDLEKIL 428 (445)
T ss_pred CHH----------HHHHHHHhHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 222 78888999999999854 46999999999 9999998776
No 56
>PHA02562 46 endonuclease subunit; Provisional
Probab=40.09 E-value=1.4e+02 Score=33.99 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 144 HYLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 144 ~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
..++.||.+|.+++.++.+.+..++ .++.+++
T Consensus 361 ~~l~~ei~~l~~~~~~~~~~l~~l~--~~l~~~~ 392 (562)
T PHA02562 361 KKVKAAIEELQAEFVDNAEELAKLQ--DELDKIV 392 (562)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHH--HHHHHHH
Confidence 3588899999888888888888888 7776666
No 57
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=39.38 E-value=1.6e+02 Score=24.78 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=24.4
Q ss_pred hHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 74 LSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
|.........+|+.+--+.|.+.-..-.+|..++.+...+...|
T Consensus 31 L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l 74 (87)
T PF08700_consen 31 LRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLL 74 (87)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555444444666666666666666666655544
No 58
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=39.38 E-value=2e+02 Score=31.07 Aligned_cols=58 Identities=17% Similarity=0.100 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
=++.-|+++++.|+.+..++.+.++.+=+. +.=...-.|..||+-||-=-+.++...-
T Consensus 251 Pqi~~LkarieSlrkql~qe~q~isag~~~-----------------~sl~~qaAefq~l~lE~~fAekay~AAl 308 (372)
T COG3524 251 PQIPGLKARIESLRKQLLQEKQAISAGGSS-----------------QSLSNQAAEFQRLYLENTFAEKAYAAAL 308 (372)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCCCc-----------------cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888777766655333111 1112244578888888876666666544
No 59
>PF14182 YgaB: YgaB-like protein
Probab=38.83 E-value=99 Score=26.80 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 75 SDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 75 sdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
-+.|.++|.+|.++++. .++...+.||.+.+.+....++++.+
T Consensus 23 lERCqeIE~eL~~l~~e--a~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 23 LERCQEIEKELKELERE--AELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678899999885544 55667778888888888777776644
No 60
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=36.91 E-value=69 Score=25.89 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITR 178 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~ 178 (606)
|+.++..|..+|-.|++.++.+. ..+..|+.
T Consensus 31 Le~~~~~L~~en~~L~~~~~~L~--~~~~~L~~ 61 (64)
T PF00170_consen 31 LEEKVEELESENEELKKELEQLK--KEIQSLKS 61 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 67778888888888888888888 77777763
No 61
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=36.78 E-value=2.3e+02 Score=34.17 Aligned_cols=102 Identities=15% Similarity=0.200 Sum_probs=62.2
Q ss_pred cccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHH----HHhh--HHhhHHhhhhccCCccCCC
Q psy10329 63 ANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQGL----QDKN--IKLSECLSKTYSTDVSHTQ 129 (606)
Q Consensus 63 ~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~~l----~~~~--~~~~~~l~~~~~~~~~~~~ 129 (606)
+-++|.+.-+. +.-+.+..+-+|+.++.+.| +-+......|++. +... ....+.|.+.+.. +.
T Consensus 335 ~~~~l~~il~~~~~~R~~~~~rr~~~~l~k~~~r~~il~g~~~~~~~id~~i~iir~~~~~~~~~~~l~~~f~~----~~ 410 (738)
T TIGR01061 335 IQVGLLSYLDAYIKHCHEVIINRSKYELEKASKRLEIVEGLIKAISIIDEIIKLIRSSEDKSDAKENLIDNFKF----TE 410 (738)
T ss_pred eECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHcCCCHHHHHHHHHHhcCC----CH
Confidence 44566555444 33445667777777677777 4333332233332 2111 1345555555554 33
Q ss_pred CCCccCccccCCcchhHHHHHHHHHHH-hhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 130 DSSSTTSLESITPDHYLKIEVLKLVEE-NLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~e~~~l~~e-nl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+ +.++.|.--+.+||.+ -.+|+++.+.+. +++.+|+.+|
T Consensus 411 ~----------q~~~il~m~l~~lt~~e~~kl~~e~~~l~--~~i~~l~~iL 450 (738)
T TIGR01061 411 N----------QAEAIVSLRLYRLTNTDIFELKEEQNELE--KKIISLEQII 450 (738)
T ss_pred H----------HHHHHHhhHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 3 7888899999999874 446888888888 8888888655
No 62
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=36.27 E-value=1.9e+02 Score=33.95 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVASASKDE 173 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~ 173 (606)
++...|+.++++++.+++++..=|.+.-.. . ..+.....|+.-+-.++-.|+-++.... +.+
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r~-----------~-----~~~~~~~rei~~~~~~I~~L~~~L~e~~--~~v 497 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRRE-----------V-----RDKVRKDREIRARDRRIERLEKELEEKK--KRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-----HHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 445555555555555555555433322111 1 3444455666666666666666666655 666
Q ss_pred HHHHHHH
Q psy10329 174 NEITRMI 180 (606)
Q Consensus 174 ~~l~~~~ 180 (606)
..|++.+
T Consensus 498 e~L~~~l 504 (652)
T COG2433 498 EELERKL 504 (652)
T ss_pred HHHHHHH
Confidence 6666333
No 63
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=35.64 E-value=2.7e+02 Score=23.41 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=16.1
Q ss_pred HHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 150 VLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 150 ~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
+.....+|.+|+++++.+. +++..++
T Consensus 42 l~~a~~e~~~Lk~E~e~L~--~el~~~r 67 (69)
T PF14197_consen 42 LGDAYEENNKLKEENEALR--KELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHhh
Confidence 4445557777777777777 6654443
No 64
>KOG0971|consensus
Probab=35.57 E-value=1.3e+02 Score=36.87 Aligned_cols=29 Identities=17% Similarity=0.352 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 147 KIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 147 ~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
..-++.||..|+.|.|++..++ +++..|-
T Consensus 447 E~MV~qLtdknlnlEekVklLe--etv~dlE 475 (1243)
T KOG0971|consen 447 EEMVEQLTDKNLNLEEKVKLLE--ETVGDLE 475 (1243)
T ss_pred HHHHHHHHhhccCHHHHHHHHH--HHHHHHH
Confidence 4457889999999888887777 6665554
No 65
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=35.55 E-value=8.3e+02 Score=29.07 Aligned_cols=167 Identities=13% Similarity=0.153 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhcCCC
Q psy10329 382 EYRQVLSDTGVWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRLGRSESVGSSPGDLQALLMSFYKLLVLHGID 461 (606)
Q Consensus 382 E~~~~L~dLi~~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~kR~~s~~~s~~~i~~IL~~~~~lL~~~~V~ 461 (606)
.+...+++.+...-+..+..+...+..++ ..+.-.++... +........+......+..+|...+.++..+==
T Consensus 527 ~~~~~le~~v~~gL~~~i~~l~~~v~~iL-----~~Qkk~Df~p~-~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~- 599 (710)
T PF07393_consen 527 SFESRLEEKVNAGLNKGIDVLMNWVEFIL-----SEQKKTDFKPK-EDDLSLDQQPTPACQEVVEFLERHCSLLKGSLD- 599 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhcCCCCCCCC-ccccccccCCCHHHHHHHHHHHHHHHHHHHHcc-
Confidence 46667778888888887777777766643 11111112100 000000000111234556669998888876622
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHhh--cCcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHHHHhhhhccCc
Q psy10329 462 MEIINQVFKQLYYYIGASSLNNLLL--RKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARKT 539 (606)
Q Consensus 462 p~Li~QlFsQLF~fIna~lFN~LLl--rk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqLLQ~~KT 539 (606)
...+.....-|+..+|+.|+. .+--.+-.-|+++..=|....+++++-+. ..+...|+-|.++++|+.++
T Consensus 600 ----~~nl~~f~~elg~~l~~~l~~h~kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~~--~~v~~~F~~L~~l~nl~~v~-- 671 (710)
T PF07393_consen 600 ----GSNLDVFLQELGERLHRLLLKHLKKFTVSSTGGLQLIKDLNEYQDFIRSWGI--PSVDEKFEALKELGNLFIVD-- 671 (710)
T ss_pred ----chhHHHHHHHHHHHHHHHHHHHHHhCccCchhHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHhheeec--
Confidence 222333333455555555542 34456779999999999999999999887 56789999999999999994
Q ss_pred hhhHHHHHhhc--ccCCHHHHHHHHh
Q psy10329 540 QEDVNTVCEMC--NKMSTNQLESLEN 563 (606)
Q Consensus 540 ~~D~~si~~~C--~~Ln~~QL~kIL~ 563 (606)
.++...++..- ..+++..|+..++
T Consensus 672 ~~~l~~~~~~~~~~~~~~~~i~~fi~ 697 (710)
T PF07393_consen 672 PENLKELCREGQLGRFSPEEIYEFIQ 697 (710)
T ss_pred HHHHHHHHhhccccCCCHHHHHHHHH
Confidence 35555555432 3467777766664
No 66
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.02 E-value=2.8e+02 Score=29.32 Aligned_cols=33 Identities=15% Similarity=0.136 Sum_probs=17.2
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHhcC
Q psy10329 149 EVLKLVEENLKLKQALEVASASKDENEITRMIVEG 183 (606)
Q Consensus 149 e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~~~ 183 (606)
|+.++-.|=-.|+.+++.+. ++|++-+..|.++
T Consensus 74 ~i~~~~~eik~l~~eI~~~~--~~I~~r~~~l~~r 106 (265)
T COG3883 74 EIDQSKAEIKKLQKEIAELK--ENIVERQELLKKR 106 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 34444333344555666666 6666655555444
No 67
>PRK11637 AmiB activator; Provisional
Probab=34.74 E-value=2.9e+02 Score=30.71 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
++.||..+..+=-+++++++.+.
T Consensus 101 ~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 101 LNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444455555444
No 68
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=34.65 E-value=1.5e+02 Score=28.52 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
|..+|..|..|+-.|+++++.+.
T Consensus 114 l~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 114 LREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888777666
No 69
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=34.57 E-value=2e+02 Score=26.17 Aligned_cols=54 Identities=30% Similarity=0.401 Sum_probs=0.0
Q ss_pred HHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHH
Q psy10329 71 RQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEV 150 (606)
Q Consensus 71 rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (606)
++.+-|...++|.++.+ ...++++++.++..|-+||..++-
T Consensus 3 k~~l~~~l~~le~~l~~----l~~~~~~LK~~~~~l~EEN~~L~~----------------------------------- 43 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQ----LLEELEELKKQLQELLEENARLRI----------------------------------- 43 (107)
T ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Q ss_pred HHHHHHhhhHHHHHHHhh
Q psy10329 151 LKLVEENLKLKQALEVAS 168 (606)
Q Consensus 151 ~~l~~enl~l~e~~~~~~ 168 (606)
||-.|++.+...+
T Consensus 44 -----EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 44 -----ENEHLRERLEELE 56 (107)
T ss_pred -----HHHHHHHHHHHHh
No 70
>PRK11637 AmiB activator; Provisional
Probab=34.30 E-value=4e+02 Score=29.54 Aligned_cols=17 Identities=12% Similarity=0.364 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhHHHHHH
Q psy10329 149 EVLKLVEENLKLKQALE 165 (606)
Q Consensus 149 e~~~l~~enl~l~e~~~ 165 (606)
++..|..+--.|+.+++
T Consensus 234 ~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 234 QLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 71
>KOG0971|consensus
Probab=34.26 E-value=3.1e+02 Score=33.82 Aligned_cols=15 Identities=40% Similarity=0.532 Sum_probs=10.9
Q ss_pred CCCCCCCCchhhhhc
Q psy10329 183 GSSSPPSLDEESMLG 197 (606)
Q Consensus 183 ~~~~~~~~~~~~~~~ 197 (606)
.+-.+||.+.+++.-
T Consensus 554 es~q~~s~~~et~dy 568 (1243)
T KOG0971|consen 554 ESQQPPSVDPETFDY 568 (1243)
T ss_pred HhcCCCCCchhhhHH
Confidence 367788888877653
No 72
>PRK09039 hypothetical protein; Validated
Probab=33.97 E-value=3.5e+02 Score=29.47 Aligned_cols=51 Identities=10% Similarity=0.160 Sum_probs=27.6
Q ss_pred chHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhh
Q psy10329 67 FREYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLS 118 (606)
Q Consensus 67 l~e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 118 (606)
|.+....++++...+.-+... ..+...++.+++.+++.++++...++..+.
T Consensus 55 L~~L~~qIa~L~e~L~le~~~-~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 55 LDRLNSQIAELADLLSLERQG-NQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455555555444444 344446666666666666666666666444
No 73
>PF04793 Herpes_BBRF1: BRRF1-like protein; InterPro: IPR006878 Most proteins in this entry are uncharacterised viral proteins translated from gene 49. The UL6 locus of pseudorabies virus (PRV) has a gene cluster with homology to herpes simplex virus UL5, UL6, UL7 and UL8, Epstein-Barr virus BBRF1 and BBRF2, and Kaposi sarcoma-associated herpes virus ORF43 and ORF42 [].
Probab=33.58 E-value=3.2e+02 Score=29.17 Aligned_cols=77 Identities=8% Similarity=0.147 Sum_probs=47.7
Q ss_pred HHHHHHhhhHH------HHHHHhhcCcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHHHHhhhhccCchhh
Q psy10329 469 FKQLYYYIGAS------SLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARKTQED 542 (606)
Q Consensus 469 FsQLF~fIna~------lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqLLQ~~KT~~D 542 (606)
|.|+++|..+. ++|+.+... -+...+ =++.-+..+.+|+...+...+.+...+..+..+++=++...+.-|
T Consensus 191 ~NqvVfWt~vlk~f~~ci~~~~l~d~--I~~~~~-LLk~evk~f~~w~~~~~~~~~~~~~~~~~l~~l~~~it~~ss~~~ 267 (284)
T PF04793_consen 191 FNQVVFWTAVLKMFQSCIYEQYLLDS--IACLSA-LLKNEVKAFCEWYDSQEFPHSVPLAMVKYLEHLLRDITDDSSDSD 267 (284)
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccccchh
Confidence 67777777654 344444432 111222 257789999999999995455666677777777776666554444
Q ss_pred HHHHHh
Q psy10329 543 VNTVCE 548 (606)
Q Consensus 543 ~~si~~ 548 (606)
+..+++
T Consensus 268 ~~ei~~ 273 (284)
T PF04793_consen 268 ASEIIS 273 (284)
T ss_pred HHHHHH
Confidence 444443
No 74
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.43 E-value=1.3e+02 Score=25.55 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=25.4
Q ss_pred HHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 75 SDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 75 sdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
-|++-.|.-|+++|+.... .+...++...+.|+.||+++++
T Consensus 17 vdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444433 6667777777777777777655
No 75
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=33.39 E-value=2.5e+02 Score=32.68 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
+..|...|..++-++.+.+..++ +.+..++
T Consensus 204 l~~E~~~L~~q~~e~~~ri~~LE--edi~~l~ 233 (546)
T PF07888_consen 204 LKEERESLKEQLAEARQRIRELE--EDIKTLT 233 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 44444444444444444444444 4444333
No 76
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=33.36 E-value=57 Score=24.21 Aligned_cols=29 Identities=10% Similarity=0.225 Sum_probs=25.0
Q ss_pred hhhHHHHHhhcccCCHHHHHHHHhcCCCC
Q psy10329 540 QEDVNTVCEMCNKMSTNQLESLENELNRA 568 (606)
Q Consensus 540 ~~D~~si~~~C~~Ln~~QL~kIL~~Y~p~ 568 (606)
.+.++.+.+++|.+...+|.+.|..+.-+
T Consensus 3 ~~~v~~L~~mFP~l~~~~I~~~L~~~~g~ 31 (43)
T smart00546 3 DEALHDLKDMFPNLDEEVIKAVLEANNGN 31 (43)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCC
Confidence 35678899999999999999999988753
No 77
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=33.24 E-value=2.6e+02 Score=33.22 Aligned_cols=38 Identities=13% Similarity=0.208 Sum_probs=29.4
Q ss_pred CcchhHHHHHHHHHHH-hhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 141 TPDHYLKIEVLKLVEE-NLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 141 ~~~~~~~~e~~~l~~e-nl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+.++.+.--+.|||.- --.++++++.++ ++++++++.|
T Consensus 389 qa~ail~mrl~rlt~~e~~k~~~e~~~l~--~~i~~~~~~L 427 (635)
T PRK09631 389 DIENLLKIPIRRISLFDIDKNQKEIRILN--KELKSVEKNL 427 (635)
T ss_pred HHHHHHHhHHHHHhhhhHHHHHHHHHHHH--HHHHHHHHHH
Confidence 7888899999999874 445777888888 8888877544
No 78
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=32.91 E-value=2e+02 Score=23.13 Aligned_cols=40 Identities=30% Similarity=0.326 Sum_probs=18.1
Q ss_pred HHHHhHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q psy10329 70 YRQVLSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDK 109 (606)
Q Consensus 70 ~rq~lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~ 109 (606)
||+--....-.||.++..|+.+.. .++..+..+++.|..+
T Consensus 20 ~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 20 SRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445555555555555443322 3334444444444333
No 79
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=32.74 E-value=4.2e+02 Score=25.16 Aligned_cols=84 Identities=24% Similarity=0.221 Sum_probs=42.1
Q ss_pred HhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHH
Q psy10329 76 DTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLK 152 (606)
Q Consensus 76 dl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 152 (606)
+-+..+|.++..+..+.- .++..|...++.|..+.++++.-|...-.. ..+ .........-
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~----lee------------~~~~~~~~E~ 77 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK----LEE------------SEKRKSNAEQ 77 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHh------------HHHHHHhHHH
Confidence 344555555555444443 566666666666666666666544433222 111 0111112224
Q ss_pred HHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 153 LVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 153 l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
|+...--|.++++..+ +.++...
T Consensus 78 l~rriq~LEeele~ae--~~L~e~~ 100 (143)
T PF12718_consen 78 LNRRIQLLEEELEEAE--KKLKETT 100 (143)
T ss_pred HHhhHHHHHHHHHHHH--HHHHHHH
Confidence 4445555777777776 5555444
No 80
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=32.64 E-value=5.5e+02 Score=26.14 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
||-.+.+.-...-.|.+.|+... +++.+|.++.
T Consensus 166 Lqa~lkk~e~~~~SLe~~LeQK~--kEn~ELtkIC 198 (207)
T PF05010_consen 166 LQASLKKEEMKVQSLEESLEQKT--KENEELTKIC 198 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 66677777777888888999988 8888888543
No 81
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.51 E-value=2.1e+02 Score=32.70 Aligned_cols=38 Identities=34% Similarity=0.396 Sum_probs=22.1
Q ss_pred hHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhH
Q psy10329 74 LSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
-.|+.|-|=.+++++++ +++++..+=++|++||+++++
T Consensus 57 P~DTlrTlva~~k~~r~----~~~~l~~~N~~l~~eN~~L~~ 94 (472)
T TIGR03752 57 PADTLRTLVAEVKELRK----RLAKLISENEALKAENERLQK 94 (472)
T ss_pred ccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665333 355555566666666666655
No 82
>KOG0412|consensus
Probab=32.39 E-value=9.7e+02 Score=28.94 Aligned_cols=175 Identities=14% Similarity=0.189 Sum_probs=98.8
Q ss_pred hhhccccchHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhhccC---CCCcccCCCCCCCCCCCCCCCCcccHHHH
Q psy10329 372 AQCLANFDFREYRQVLSDTGVWIYQAVVRF-MEEKINSIVIPAILEFE---SIPVMSSGKPSRLGRSESVGSSPGDLQAL 447 (606)
Q Consensus 372 ~~~L~~fdl~E~~~~L~dLi~~iy~~li~~-i~k~L~~livpAiLe~e---si~g~~~~k~~g~kR~~s~~~s~~~i~~I 447 (606)
++|+.++ .+...-+.+++..-+.++... ++.+++|.|.+ ..... +..+++.. ....+=|..+
T Consensus 583 ~~~l~~l--~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~~id~-f~~is~~ls~edy~~~-----------ea~d~~Vq~f 648 (773)
T KOG0412|consen 583 KSCLSNL--EALSLKFKDLLKWGMEQLFSTVLKPRIRPWIDT-FVNISYNLSEEDYAAY-----------EANDPWVQQF 648 (773)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhhh-hhhhhccccHHHHhhh-----------ccCChHHHHH
Confidence 4565554 455556677888888888864 45788887655 32221 00011000 0112234555
Q ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhch
Q psy10329 448 LMSFYKLLVLHG--IDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLS 525 (606)
Q Consensus 448 L~~~~~lL~~~~--V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~ 525 (606)
|.++...+-.+. ++|.-..-+.+=+--+|-..+= ..|.. --.++--|+|+---++.|-..+-. ...-.+.+-|.
T Consensus 649 l~~v~~l~~~~k~~ltp~nY~sLlsl~~~~ia~~LE-~~i~k-~~FNrlG~lqLDre~r~lis~lt~--~t~~~lRdKf~ 724 (773)
T KOG0412|consen 649 LSSVEQLLAELKNSLTPENYDSLLSLIVDEIATQLE-QIIWK-IQFNRLGGLQLDRELRALISYLTG--VTQWNLRDKFA 724 (773)
T ss_pred HHHHHHHHHhhhcccChhhHHHHHHHHHHHHHHHHH-HHHHH-hHHHhhcchHhhHHHHHHHHHhhc--ccchhHHHHHH
Confidence 666666664443 5565444444444444443332 22222 112223588888888888777763 22356789999
Q ss_pred hHHHHHhhhhccC-ch--hhHHHHH-hhcccCCHHHHHHHHhc
Q psy10329 526 PLIQASQLLQARK-TQ--EDVNTVC-EMCNKMSTNQLESLENE 564 (606)
Q Consensus 526 pL~QAaqLLQ~~K-T~--~D~~si~-~~C~~Ln~~QL~kIL~~ 564 (606)
+|.|++-||...| +. +-|..=. .+-..|||+.+.++|.+
T Consensus 725 RLtQIatLLnle~~se~le~w~~~~g~~twrLt~~EVr~vl~l 767 (773)
T KOG0412|consen 725 RLTQIATLLNLEKDSEILEYWGPNSGPLTWRLTPAEVRKVLAL 767 (773)
T ss_pred HHHHHHHHHcccccchHHHhcCCCCCCceEEeCHHHHHHHHHh
Confidence 9999999999988 32 2221111 13456999999999864
No 83
>PF15058 Speriolin_N: Speriolin N terminus
Probab=32.02 E-value=88 Score=31.51 Aligned_cols=39 Identities=33% Similarity=0.427 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 96 REKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
+|-++.+|++|..||++++| .-||..||..|+-.+-+.-
T Consensus 7 yeGlrhqierLv~ENeeLKK----------------------------------lVrLirEN~eLksaL~ea~ 45 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKK----------------------------------LVRLIRENHELKSALGEAC 45 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHH----------------------------------HHHHHHHHHHHHHHHHHhh
Confidence 46678899999999999988 2367789999888755444
No 84
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=31.93 E-value=4.6e+02 Score=31.02 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=37.6
Q ss_pred HHHHhHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhH
Q psy10329 70 YRQVLSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYL 146 (606)
Q Consensus 70 ~rq~lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (606)
|-+.++.-+..+...++.+-.... +++......|+.|.....+++.-+...... ..+.+++ ..+--+
T Consensus 16 ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~-----~~pa~ps-----e~E~~L 85 (617)
T PF15070_consen 16 YAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP-----EPPAGPS-----EVEQQL 85 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc-----cccccch-----HHHHHH
Confidence 444455444444444333222222 555555555666665555554433222222 1222333 445456
Q ss_pred HHHHHHHHHHhhhHHHHH
Q psy10329 147 KIEVLKLVEENLKLKQAL 164 (606)
Q Consensus 147 ~~e~~~l~~enl~l~e~~ 164 (606)
+.|+..|-.|-=+|.+++
T Consensus 86 q~E~~~L~kElE~L~~ql 103 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666644433333333
No 85
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.45 E-value=2.9e+02 Score=28.63 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=67.2
Q ss_pred HHHhhhccCCCcchhhccCchhhhhhhhcccCchHHHHHhHHhHHhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh
Q psy10329 35 RLLNLLKQYSGEKAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVQLESEVDELKT-----RLMNDREKYLSEIQGLQDK 109 (606)
Q Consensus 35 ~l~~~l~qysg~~~~~~~nt~~qn~~~l~nfdl~e~rq~lsdl~~~le~~l~~~~~-----~~~~~~~~~~~~~~~l~~~ 109 (606)
+|++-|+-+-|-=+-|+.-- .|-+-..|+.=.|+.++.-. +..=|+.|++ ...+.+++++..++.+++|
T Consensus 77 kf~eeLrg~VGhiERmK~Pi----GHDvEhiD~elvrkEl~nAl--vRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~E 150 (290)
T COG4026 77 KFFEELRGMVGHIERMKIPI----GHDVEHIDVELVRKELKNAL--VRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKE 150 (290)
T ss_pred HHHHHHHHhhhhhheeccCC----CCCccccCHHHHHHHHHHHH--HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544443321 24456677777777766433 2334444331 1225666666666767766
Q ss_pred hHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 110 NIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 110 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
++.+-+-|..- + + ..+ -+|.++.+|-.||--|.|.+.++. -+.-+|++-+
T Consensus 151 keeL~~eleel---------e----~-----e~e-e~~erlk~le~E~s~LeE~~~~l~--~ev~~L~~r~ 200 (290)
T COG4026 151 KEELLKELEEL---------E----A-----EYE-EVQERLKRLEVENSRLEEMLKKLP--GEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHH---------H----H-----HHH-HHHHHHHHHHHHHHHHHHHHHhch--hHHHHHHHHH
Confidence 66655422211 0 1 111 277788888888888888888887 7777777433
No 86
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.67 E-value=2.4e+02 Score=31.65 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 144 HYLKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 144 ~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
........++...-..+.++++.+. +++.+|+..+
T Consensus 371 ~~~~~~~~~l~~~~~~l~~~~~~l~--~~~~~l~~~l 405 (451)
T PF03961_consen 371 PEKKEQLKKLKEKKKELKEELKELK--EELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3466777888888888888888888 7777777555
No 87
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=30.26 E-value=4.3e+02 Score=28.32 Aligned_cols=96 Identities=22% Similarity=0.211 Sum_probs=43.5
Q ss_pred hcCCchhHHHHHHHHHHHHhhhccCCCc--chhhccCchhhhhhhhcccC---chHHHHHhHHhHHhhHH---HHHHHHH
Q psy10329 19 RYEDLDSTILWLTNLLRLLNLLKQYSGE--KAFQTDNTEVQNAQCLANFD---FREYRQVLSDTGVQLES---EVDELKT 90 (606)
Q Consensus 19 ~~~d~~~~~~wl~n~~~l~~~l~qysg~--~~~~~~nt~~qn~~~l~nfd---l~e~rq~lsdl~~~le~---~l~~~~~ 90 (606)
-..|.+.+.=++...--++.-|+.+-.. ++. +..++-..-+.+.| |..+|+.|.+....|+. ++.+++.
T Consensus 161 L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~---~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~ 237 (325)
T PF08317_consen 161 LQEDYAKLDKQLEQLDELLPKLRERKAELEEEL---ENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQE 237 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655555544443322 111 11222222234444 45556666666666652 2222222
Q ss_pred HHH---HHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 91 RLM---NDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 91 ~~~---~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
+.. .+++++..+++.++++...+++.+
T Consensus 238 el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 238 ELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 445555555555555555555433
No 88
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=30.20 E-value=3.4e+02 Score=22.91 Aligned_cols=56 Identities=23% Similarity=0.277 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALE 165 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~ 165 (606)
++.++.+..|..++...++++++-.+.+.. . ..+..++.|+..|+.+--.+-..+.
T Consensus 7 ~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~-----------~-----~~d~~~~~el~~l~~~i~~~~~~~~ 62 (103)
T PF00804_consen 7 DEVQEIREDIDKIKEKLNELRKLHKKILSS-----------P-----DQDSELKRELDELTDEIKQLFQKIK 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------S-----SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------C-----CcchhHHHHHHHHHHHHHHHHHHHH
Confidence 677778888888888888877766666554 2 2234688899999887666555444
No 89
>PRK14127 cell division protein GpsB; Provisional
Probab=29.95 E-value=4.4e+02 Score=24.20 Aligned_cols=46 Identities=22% Similarity=0.218 Sum_probs=30.3
Q ss_pred hcccCchHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhH
Q psy10329 62 LANFDFREYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 62 l~nfdl~e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
++-||-.|.-.-|.+++.-.|.=.++ +.+|+.++.+|+++...++.
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e--------~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKE--------IEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888877766554444 55555566666666555555
No 90
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=29.47 E-value=2.3e+02 Score=23.95 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEI 176 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l 176 (606)
+|+....-..+|-+|.++++.+. +....|
T Consensus 33 Lq~~~~~t~~~~a~L~~qv~~Ls--~qv~~L 61 (70)
T PF04899_consen 33 LQHMFEQTSQENAALSEQVNNLS--QQVQRL 61 (70)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHH--HHHHHH
Confidence 55555555556666666666665 444443
No 91
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.29 E-value=6.2e+02 Score=27.56 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=21.0
Q ss_pred HHHHHHHhhhHHHHHHHhh-----hhhHHHHHHHHHh
Q psy10329 150 VLKLVEENLKLKQALEVAS-----ASKDENEITRMIV 181 (606)
Q Consensus 150 ~~~l~~enl~l~e~~~~~~-----~~~~~~~l~~~~~ 181 (606)
|--|..||--|+|++..+. +...+.|||.++.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888877776655 1245667776665
No 92
>PLN02678 seryl-tRNA synthetase
Probab=29.27 E-value=4.5e+02 Score=29.84 Aligned_cols=63 Identities=17% Similarity=0.161 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 90 TRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
-+..++..++..+++.|+.+..+..+-+.+. .. ..+ .. ..+..|+..|..|=-.|.++++.++
T Consensus 36 l~ld~~~r~l~~~~e~lr~erN~~sk~I~~~-k~----~~~----------~~-~~l~~~~~~Lk~ei~~le~~~~~~~ 98 (448)
T PLN02678 36 IALDKEWRQRQFELDSLRKEFNKLNKEVAKL-KI----AKE----------DA-TELIAETKELKKEITEKEAEVQEAK 98 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh----CCC----------cH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334666677778888888877777766542 11 111 11 2355566665555555555555444
No 93
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.26 E-value=3.9e+02 Score=31.96 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=17.2
Q ss_pred hhHHHHHHHhhhhhHHHHHHHHHhcC
Q psy10329 158 LKLKQALEVASASKDENEITRMIVEG 183 (606)
Q Consensus 158 l~l~e~~~~~~~~~~~~~l~~~~~~~ 183 (606)
-+|+++++.++ +...+||.++.++
T Consensus 609 ~~l~~~~~~~e--kr~~RLkevf~~k 632 (722)
T PF05557_consen 609 AELKAELASAE--KRNQRLKEVFKAK 632 (722)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 45666777777 7788888777666
No 94
>PF14923 CCDC142: Coiled-coil protein 142
Probab=29.23 E-value=9e+02 Score=27.59 Aligned_cols=118 Identities=19% Similarity=0.259 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCC-CCCCCC--CCCcccH-HHHHHHHHH-HHH-
Q psy10329 383 YRQVLSDTGVWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRL-GRSESV--GSSPGDL-QALLMSFYK-LLV- 456 (606)
Q Consensus 383 ~~~~L~dLi~~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~-kR~~s~--~~s~~~i-~~IL~~~~~-lL~- 456 (606)
..+.+.+-+..+|.+.++.+-...-.++ +|. ++. ++...+ |..+... ..++..++. +++
T Consensus 228 ~Lq~~s~e~~~~f~~~C~~~s~~~f~~~---------mP~------g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g 292 (450)
T PF14923_consen 228 KLQSLSSECLRLFSQDCRKMSLAIFELC---------MPS------GRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQG 292 (450)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHh---------CCC------cchhcccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666555444432 331 123 333222 2222222 222333333 343
Q ss_pred hcCCCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHh--CCC
Q psy10329 457 LHGIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRD--NKM 515 (606)
Q Consensus 457 ~~~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~--~gL 515 (606)
..++++..-.-+.+++..-|.-.-.++|+..|=-+|-.-|+|++.-.+.+.+|+.+ .||
T Consensus 293 ~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~DF~~Vr~wl~~e~~~L 353 (450)
T PF14923_consen 293 VQGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQDFGYVRDWLESECSGL 353 (450)
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 34578888888889999999999999999999889999999999999999999998 777
No 95
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=29.20 E-value=81 Score=23.36 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=24.3
Q ss_pred hhhHHHHHhhcccCCHHHHHHHHhcCCCC
Q psy10329 540 QEDVNTVCEMCNKMSTNQLESLENELNRA 568 (606)
Q Consensus 540 ~~D~~si~~~C~~Ln~~QL~kIL~~Y~p~ 568 (606)
.+.++.+.+++|.+.+..|.++|..+.-+
T Consensus 2 ~~~v~~L~~mFP~~~~~~I~~~L~~~~~~ 30 (42)
T PF02845_consen 2 EEMVQQLQEMFPDLDREVIEAVLQANNGD 30 (42)
T ss_dssp HHHHHHHHHHSSSS-HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCC
Confidence 35678999999999999999999888754
No 96
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=29.07 E-value=1.9e+02 Score=34.80 Aligned_cols=57 Identities=23% Similarity=0.246 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhh---HHHHHHHhhhhhHHHH
Q psy10329 99 YLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLK---LKQALEVASASKDENE 175 (606)
Q Consensus 99 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~---l~e~~~~~~~~~~~~~ 175 (606)
+++-++.|+.|..+..+ +|++.|.. .+++ |++||.+-.++-++ |+|+.|.+. +++..
T Consensus 671 LK~k~E~Lk~Evaka~~------------~pd~~~k~-----kiea-l~~qik~~~~~a~~~~~lkek~e~l~--~e~~~ 730 (762)
T PLN03229 671 LKSKIELLKLEVAKASK------------TPDVTEKE-----KIEA-LEQQIKQKIAEALNSSELKEKFEELE--AELAA 730 (762)
T ss_pred HHHHHHHHHHHHHhcCC------------CCCcchHH-----HHHH-HHHHHHHHHHHHhccHhHHHHHHHHH--HHHHH
Confidence 45555555555543322 67744444 4554 89999998888886 666666666 55433
No 97
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=29.00 E-value=2.4e+02 Score=28.62 Aligned_cols=87 Identities=9% Similarity=0.102 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhh
Q psy10329 82 ESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENL 158 (606)
Q Consensus 82 e~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl 158 (606)
-.+|.+.+.+.. .++-.|+.++...+.++.....-+...-.. .++-. . ..+ ..+.|+.|..+|.-
T Consensus 16 KqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~--~~~K~----~-----ELE-~ce~ELqr~~~Ea~ 83 (202)
T PF06818_consen 16 KQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDS--LRTKQ----L-----ELE-VCENELQRKKNEAE 83 (202)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH--HHHhh----H-----hHH-HhHHHHHHHhCHHH
Confidence 344544455554 788888888888888777554433221111 00111 1 222 47889999999998
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 159 KLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 159 ~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
-|++++..++ .++.+||..+..
T Consensus 84 lLrekl~~le--~El~~Lr~~l~~ 105 (202)
T PF06818_consen 84 LLREKLGQLE--AELAELREELAC 105 (202)
T ss_pred HhhhhhhhhH--HHHHHHHHHHHh
Confidence 9999999999 999999966643
No 98
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=28.86 E-value=4.3e+02 Score=27.48 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
|..+..+|-.|.-+|+...+.++
T Consensus 182 LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 182 LEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHhchhHHHHHHHHHHHhc
Confidence 66677777778888888888887
No 99
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=28.84 E-value=5.2e+02 Score=28.95 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 85 VDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
+++ --+..++..++..+++.|+.+..+.++-+.+
T Consensus 27 vd~-i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 27 VDE-LLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 3334466677788888888888877776655
No 100
>KOG1151|consensus
Probab=28.75 E-value=7.9e+02 Score=28.39 Aligned_cols=33 Identities=12% Similarity=0.407 Sum_probs=24.4
Q ss_pred Hhhh-HHHHHHHhhhhhHHHHHHHHHhcCCCCCCCCch
Q psy10329 156 ENLK-LKQALEVASASKDENEITRMIVEGSSSPPSLDE 192 (606)
Q Consensus 156 enl~-l~e~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 192 (606)
.||+ -+|+++... ++|.+-+|+|+|+ -||+.+.
T Consensus 333 qnl~KqqE~iN~qR--eeIerqrklLaKR--KPp~~gk 366 (775)
T KOG1151|consen 333 QNLIKQQERINSQR--EEIERQRKLLAKR--KPPAMGK 366 (775)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHhcc--CCCCCCc
Confidence 4444 356788777 8888888999887 5777775
No 101
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.49 E-value=3.1e+02 Score=31.37 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=37.3
Q ss_pred HHHHhHHhH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhH
Q psy10329 70 YRQVLSDTG---VQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYL 146 (606)
Q Consensus 70 ~rq~lsdl~---~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (606)
.++-+..+. ++++.+++++.+ +-+.+++|-++|+.......+-+.+.+.. .. .-+
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~----~N~~l~~eN~~L~~r~~~id~~i~~av~~----~~--------------~~~ 114 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLIS----ENEALKAENERLQKREQSIDQQIQQAVQS----ET--------------QEL 114 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hh--------------HHH
Confidence 344444443 555666666333 34455566666655544443333333332 11 115
Q ss_pred HHHHHHHHHHhhhHHHHHHHhh
Q psy10329 147 KIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 147 ~~e~~~l~~enl~l~e~~~~~~ 168 (606)
++|...|..|=..++.++..+.
T Consensus 115 ~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 115 TKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555555555555444
No 102
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=28.25 E-value=84 Score=25.89 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=28.2
Q ss_pred CcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 141 TPDHYLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 141 ~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
+..-.++.|+++....|+.+..++...+ +.++.|.
T Consensus 11 rakQ~~~eEL~kvk~~n~~~e~kLqeaE--~rn~eL~ 45 (61)
T PF08826_consen 11 RAKQAIQEELTKVKSANLAFESKLQEAE--KRNRELE 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4445688899998889999988888888 7777777
No 103
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.83 E-value=2.4e+02 Score=23.29 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=22.1
Q ss_pred hHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy10329 74 LSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (606)
.+..++..|+.|++...+ ..++..+|+.|+.+.+++
T Consensus 23 vk~~n~~~e~kLqeaE~r----n~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKR----NRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 666777888888875544 344555555555555543
No 104
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=27.78 E-value=5.1e+02 Score=26.84 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
|..++..++.+--.|.+..+..+ ++...|+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke--~Ea~~lq 109 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKE--EEAEELQ 109 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 55566666555555555555555 5444444
No 105
>KOG1655|consensus
Probab=27.46 E-value=2.2e+02 Score=28.88 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccC
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYST 123 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 123 (606)
..++.++.+++.+-+...++|++|++++-.
T Consensus 126 d~IedlQDem~Dlmd~a~EiQE~Lgr~y~~ 155 (218)
T KOG1655|consen 126 DKIEDLQDEMEDLMDQADEIQEVLGRNYNT 155 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 899999999999999999999999999875
No 106
>KOG4593|consensus
Probab=27.33 E-value=7.4e+02 Score=29.72 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHhhhccCCCc-chhhccCchhhhh--hhhcccCc-----hHHHHHhHH
Q psy10329 5 LSAIILNVKRVVKKRYEDLDSTILWLTNLLRLLNLLKQYSGE-KAFQTDNTEVQNA--QCLANFDF-----REYRQVLSD 76 (606)
Q Consensus 5 ~~~~~~~ik~~~k~~~~d~~~~~~wl~n~~~l~~~l~qysg~-~~~~~~nt~~qn~--~~l~nfdl-----~e~rq~lsd 76 (606)
++.++.+. +.++++..|.+.+.--|-=.-+. ..||-|= +.+.+++++-.+. ....-|+. ..-.++++|
T Consensus 404 ~tq~~Dl~-~~~~~~~~~~krl~~~l~~~tk~---reqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kd 479 (716)
T KOG4593|consen 404 LTQERDLN-RAILGSKDDEKRLAEELPQVTKE---REQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKD 479 (716)
T ss_pred HHHHHHHH-HHHhhccchHHHHHHHhHHHHHH---HHHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 34445666666555444333333 3344333 4566666554444 22111211 112233788
Q ss_pred hHHhhHHHHHHHHHHHH-HH-----HHHHHHHHHHHHHhhHHhhHHhh
Q psy10329 77 TGVQLESEVDELKTRLM-ND-----REKYLSEIQGLQDKNIKLSECLS 118 (606)
Q Consensus 77 l~~~le~~l~~~~~~~~-~~-----~~~~~~~~~~l~~~~~~~~~~l~ 118 (606)
++-+|.+.-+.+..... .+ ++.+..++..|+.||..+.-.+.
T Consensus 480 L~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e 527 (716)
T KOG4593|consen 480 LQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLE 527 (716)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777766443333 33 88999999999999987764433
No 107
>KOG0946|consensus
Probab=27.20 E-value=6.5e+02 Score=30.82 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=15.0
Q ss_pred CchhHHHHHHHHHHHHhhhccCC
Q psy10329 22 DLDSTILWLTNLLRLLNLLKQYS 44 (606)
Q Consensus 22 d~~~~~~wl~n~~~l~~~l~qys 44 (606)
||++.-+.-.+-.++.-+++--+
T Consensus 617 D~~f~kL~kele~~i~k~ls~~~ 639 (970)
T KOG0946|consen 617 DFEFKKLFKELEGLIAKLLSSKT 639 (970)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCC
Confidence 66777777777777766665433
No 108
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=27.09 E-value=4.8e+02 Score=28.19 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=39.1
Q ss_pred HHHHHHHHHh-----hcCCchhHHHHHHHHH-HHHhhhccCCCcchhhccCchhhhhhhhcccCchHHHHH
Q psy10329 9 ILNVKRVVKK-----RYEDLDSTILWLTNLL-RLLNLLKQYSGEKAFQTDNTEVQNAQCLANFDFREYRQV 73 (606)
Q Consensus 9 ~~~ik~~~k~-----~~~d~~~~~~wl~n~~-~l~~~l~qysg~~~~~~~nt~~qn~~~l~nfdl~e~rq~ 73 (606)
++.++.|||- |+.|+++.+-||.--. .+.+++.++++..+-.. ..+--..+.+.|.+.+..+
T Consensus 139 ~~~v~eVI~~RN~~MHS~emkvs~~wm~~~~~~i~nll~~f~~ipe~~~---a~~~Ie~ll~~d~~v~~~~ 206 (307)
T PF15112_consen 139 RKKVREVIKCRNEIMHSSEMKVSSQWMRDFQMKIQNLLNEFRNIPEIVA---AGSRIEQLLTSDWAVHIPE 206 (307)
T ss_pred HHHHHHHHHHHHHhhcCcccccCHHHHHHHHHHHHHHHHHhccChHHHH---HHHHHHHHHhhhhhhcCch
Confidence 3456677774 7889999999997543 35667777887754322 2233344556666555554
No 109
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.98 E-value=2.4e+02 Score=24.78 Aligned_cols=60 Identities=17% Similarity=0.245 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 100 LSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 100 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
.+-+.+|....+.++..+.+.+.. . +...-+..||.+|..+---|-++++..+ ..+.+|.
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~----~------------~~~~~~e~ei~~l~~dr~rLa~eLD~~~--ar~~~Le 66 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLER----D------------RKRDELEEEIQRLDADRSRLAQELDQAE--ARANRLE 66 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----h------------hhhhhHHHHHHHHHhhHHHHHHHHHhHH--HHHHHHH
Confidence 334455555555666656555554 1 1224488899999888888999999998 8888887
No 110
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.97 E-value=2.9e+02 Score=25.44 Aligned_cols=52 Identities=27% Similarity=0.227 Sum_probs=31.4
Q ss_pred hHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 68 REYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 68 ~e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
.+.++.+..+..++..-+++ -.+....+.++..|=..|+-||+++.+.|.+.
T Consensus 4 ~elfd~l~~le~~l~~l~~e-l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKE-LGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555565555555544444 33333566666667777777888888877653
No 111
>KOG0977|consensus
Probab=26.30 E-value=2.7e+02 Score=32.35 Aligned_cols=55 Identities=27% Similarity=0.303 Sum_probs=37.0
Q ss_pred CchHHHHH----hHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 66 DFREYRQV----LSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 66 dl~e~rq~----lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
|+...|.+ -+.+...-|.|+..+.+-.. .+..++..+|.+|++|++.+.+-+.+.
T Consensus 71 di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~ 132 (546)
T KOG0977|consen 71 DINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA 132 (546)
T ss_pred HHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66666666 24455666777776555444 577788888888888888777666554
No 112
>KOG0995|consensus
Probab=26.13 E-value=4.5e+02 Score=30.74 Aligned_cols=24 Identities=29% Similarity=0.346 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
+|+++--.|++.|+.+++.+++.+
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666666666644
No 113
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=25.81 E-value=6.1e+02 Score=26.13 Aligned_cols=37 Identities=5% Similarity=0.219 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 143 DHYLKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 143 ~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+.-|+.=-...+.-+-.|.|.++.-+ .++++.||+++
T Consensus 148 e~el~kas~~~~rt~~~Lee~i~~FE-kqKl~DlK~i~ 184 (219)
T PF06730_consen 148 ESELQKASVDATRTTKQLEETIDNFE-KQKLKDLKKIF 184 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33344444444556677888888887 34556666555
No 114
>KOG3156|consensus
Probab=25.79 E-value=2.4e+02 Score=28.88 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=13.1
Q ss_pred CcchhHHHHHHHHHHHh
Q psy10329 141 TPDHYLKIEVLKLVEEN 157 (606)
Q Consensus 141 ~~~~~~~~e~~~l~~en 157 (606)
++...|+||+++.++|+
T Consensus 134 k~ks~lr~ei~~~~a~~ 150 (220)
T KOG3156|consen 134 KLKSSLRHEISKTTAEF 150 (220)
T ss_pred HHHHHHHHHHHhcchhc
Confidence 34555999999998876
No 115
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.36 E-value=7.1e+02 Score=26.01 Aligned_cols=37 Identities=8% Similarity=0.079 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHhcC
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEITRMIVEG 183 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~~~ 183 (606)
.++.++...+....+|+.++..+. +++.-+++.+...
T Consensus 107 ~lrk~ld~~~~~r~~le~~i~~L~--eEl~fl~~~heeE 143 (312)
T PF00038_consen 107 SLRKDLDEETLARVDLENQIQSLK--EELEFLKQNHEEE 143 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhHHHHHHHHHH--HHHHHHHhhhhhh
Confidence 367788888889999999999999 9988888666544
No 116
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.14 E-value=1.4e+02 Score=31.51 Aligned_cols=40 Identities=28% Similarity=0.397 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 81 LESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 81 le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
+++|-++|+++..+-..++....+.++.||++++++|.-.
T Consensus 71 l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 71 LEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4444444333322222444445556899999999988543
No 117
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=25.06 E-value=3.3e+02 Score=31.12 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHhcC
Q psy10329 143 DHYLKIEVLKLVEENLKLKQALEVASASKDENEITRMIVEG 183 (606)
Q Consensus 143 ~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~~~ 183 (606)
-.++..++..+-.+-.++..+++.++ +++.+|++.+.+-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~l~~~l~~l 171 (525)
T TIGR02231 133 FDFNGSEIERLLTEDREAERRIRELE--KQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhh
Confidence 44678899999999999999999999 9999999666544
No 118
>KOG4571|consensus
Probab=24.96 E-value=1.1e+02 Score=32.65 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
+-.|+.-|+.+|=.|+++++.++ ++|+.||
T Consensus 253 l~ge~~~Le~rN~~LK~qa~~le--rEI~ylK 282 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELKDQASELE--REIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 55678889999999999999999 9999999
No 119
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=24.93 E-value=2.4e+02 Score=31.26 Aligned_cols=61 Identities=20% Similarity=0.315 Sum_probs=50.4
Q ss_pred hhhhcccCchHHHHHhHHhHHhhHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 59 AQCLANFDFREYRQVLSDTGVQLESEVDELKTR-----LM-NDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 59 ~~~l~nfdl~e~rq~lsdl~~~le~~l~~~~~~-----~~-~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
.-++--.|+.+|...+.+-...++.++.+++.+ .. +.+.++..+++.+..+.++.++++..
T Consensus 232 ~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 232 KFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366778899999999999999999999987775 22 78888889999998888888886654
No 120
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.77 E-value=5.2e+02 Score=26.50 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=18.7
Q ss_pred chHHHHHhHHhHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHh
Q psy10329 67 FREYRQVLSDTGVQLESEVDELKTRLM-NDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 67 l~e~rq~lsdl~~~le~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 113 (606)
+....+.... ....+.+.++ +...+ ++...+.++++.+..+.+.+
T Consensus 23 ~~~~~~~~~~-~~~~~~~sQ~-~id~~~~e~~~L~~e~~~l~~e~e~L 68 (251)
T PF11932_consen 23 LDQAQQVQQQ-WVQAAQQSQK-RIDQWDDEKQELLAEYRQLEREIENL 68 (251)
T ss_pred HHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 2333344444 33333 44444444444444444433
No 121
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=24.69 E-value=76 Score=24.53 Aligned_cols=20 Identities=40% Similarity=0.557 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALE 165 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~ 165 (606)
+..++++|..||++|++++.
T Consensus 26 le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 26 LENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHhc
Confidence 77899999999999999764
No 122
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=24.61 E-value=1.8e+02 Score=24.01 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=26.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhH
Q psy10329 78 GVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 78 ~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
...+|.-+.=||.+-...+..|..||++|+.++..++=
T Consensus 5 v~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~ 42 (60)
T PF14916_consen 5 VQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTF 42 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccce
Confidence 34455555553333238899999999999999987643
No 123
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=24.27 E-value=1.1e+02 Score=25.04 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
.++.++..|.+.|+.+|.+++.+|.|-
T Consensus 33 ~~R~~l~~e~~~L~~qN~eLr~lLkqY 59 (60)
T PF14775_consen 33 LDRAALIQEKESLEQQNEELRSLLKQY 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788889999999999999988764
No 124
>PF09032 Siah-Interact_N: Siah interacting protein, N terminal ; InterPro: IPR015120 The N-terminal domain of Siah interacting protein (SIP) adopts a helical hairpin structure with a hydrophobic core stabilised by a classic knobs-and-holes arrangement of side chains contributed by the two amphipathic helices. Little is known about this domain's function, except that it is crucial for interactions with Siah. It has also been hypothesised that SIP can dimerise through this N-terminal domain []. ; PDB: 1YSM_A 2A26_C 2A25_B 1X5M_A.
Probab=24.18 E-value=1.6e+02 Score=25.58 Aligned_cols=39 Identities=26% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHH
Q psy10329 101 SEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEE 156 (606)
Q Consensus 101 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e 156 (606)
+.|+.|+.+.++++.+|++.=.. ++...|..|+.++..|
T Consensus 3 ~~i~eL~~Dl~El~~Ll~~a~R~-----------------rVk~~L~~ei~klE~e 41 (79)
T PF09032_consen 3 EQIEELQLDLEELKSLLEQAKRK-----------------RVKDLLTNEIRKLETE 41 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC-----------------CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhHH-----------------HHHHHHHHHHHHHHHH
Confidence 46888999999999988766222 6888888888887444
No 125
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.06 E-value=7.1e+02 Score=30.04 Aligned_cols=35 Identities=17% Similarity=0.202 Sum_probs=22.4
Q ss_pred CcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 141 TPDHYLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 141 ~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
..|--+..|+.++..+--+|+..++.+. ++.++.+
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk--~k~~~Q~ 666 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLKASIEQLK--KKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3466688888887776556666666665 5544444
No 126
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=24.04 E-value=6e+02 Score=23.81 Aligned_cols=54 Identities=17% Similarity=0.162 Sum_probs=32.7
Q ss_pred hhcccCchHHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhH
Q psy10329 61 CLANFDFREYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 61 ~l~nfdl~e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
+-..+|..-...++.++..+.+..+.. +......+..+..++++++...++++.
T Consensus 27 ~~~~~~~~~vin~i~~Ll~~~~r~~~~-~e~l~~~~~~l~~d~~~l~~~~~rL~~ 80 (151)
T PF11559_consen 27 EESEDNDVRVINCIYDLLQQRDRDMEQ-REDLSDKLRRLRSDIERLQNDVERLKE 80 (151)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445566777777788887777766665 333335555555555555555555544
No 127
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.02 E-value=99 Score=33.21 Aligned_cols=31 Identities=35% Similarity=0.380 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
.++.|+..|..|.-.+.++++.++ ++..++.
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE--~e~~~l~ 77 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELE--KEREELD 77 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 355555555555555555555555 4444444
No 128
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=23.85 E-value=2.8e+02 Score=31.36 Aligned_cols=40 Identities=18% Similarity=0.404 Sum_probs=32.7
Q ss_pred CcchhHHHHHHHHHHHhh-hHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 141 TPDHYLKIEVLKLVEENL-KLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 141 ~~~~~~~~e~~~l~~enl-~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
+.++.|.--+.+||.+.. +|+++.+.+. +++.+|++.+.+
T Consensus 400 q~~~IL~m~L~~LT~~e~~kL~~e~~~l~--~ei~~l~~~l~~ 440 (445)
T smart00434 400 QADAILDMRLRRLTKLEVEKLEKELKELE--KEIEDLEKILAS 440 (445)
T ss_pred HHHHHHHhHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHhccc
Confidence 678889999999998665 5888899888 888888866643
No 129
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=23.84 E-value=5.6e+02 Score=25.43 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=29.7
Q ss_pred HHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHH
Q psy10329 101 SEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALE 165 (606)
Q Consensus 101 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~ 165 (606)
.+++...+...+...+....... ..+ ...-.|..|.+|..||-.|+|.+.
T Consensus 128 ~~~~~~~~kI~EM~~vM~~ai~~----de~-----------~~~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 128 KEVQSQAEKICEMAAVMRKAIEL----DEE-----------NSQEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HHHhhHHHHHHHHHHHHHHHHhc----chh-----------hhHhHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444555555555554 222 223478888888888888888764
No 130
>KOG4360|consensus
Probab=23.77 E-value=3.2e+02 Score=31.52 Aligned_cols=63 Identities=24% Similarity=0.249 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHhh-------HHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHH
Q psy10329 94 NDREKYLSEIQGLQDKN-------IKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEV 166 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~ 166 (606)
++..+|.++|-.++.+. +.+.++|.... +...-++-|...+-..|.+..+-+..
T Consensus 233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~-------------------da~~ql~aE~~EleDkyAE~m~~~~E 293 (596)
T KOG4360|consen 233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK-------------------DAQRQLTAELEELEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777766665543 34444332221 23334777888888888888888888
Q ss_pred hhhhhHHHHHH
Q psy10329 167 ASASKDENEIT 177 (606)
Q Consensus 167 ~~~~~~~~~l~ 177 (606)
.+ +++++||
T Consensus 294 ae--eELk~lr 302 (596)
T KOG4360|consen 294 AE--EELKCLR 302 (596)
T ss_pred HH--HHHHhhc
Confidence 88 8888888
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=23.70 E-value=4.2e+02 Score=25.35 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHH
Q psy10329 80 QLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEE 156 (606)
Q Consensus 80 ~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~e 156 (606)
+++.+|++.++..- ..++.+.++++..+++.+.+.. ..+++- + .-..|+.|+..+|.+
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~------------daEn~k-~------eie~L~~el~~lt~e 67 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLIL------------DAENSK-A------EIETLEEELEELTSE 67 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHH------------HHHHHH-H------HHHHHHHHHHHHHHH
Confidence 45667776444443 6677777777777776655433 112000 1 122388888888888
Q ss_pred hhhHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 157 NLKLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 157 nl~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
.=+|...++.+. ++-..|.+++.+
T Consensus 68 l~~L~~EL~~l~--sEk~~L~k~lq~ 91 (140)
T PF10473_consen 68 LNQLELELDTLR--SEKENLDKELQK 91 (140)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 888888777777 555555544433
No 132
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.67 E-value=6.6e+02 Score=24.97 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLS 118 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~ 118 (606)
+++.++..+++.|+.++.++++-|.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666665555444
No 133
>KOG4005|consensus
Probab=23.61 E-value=3.6e+02 Score=28.21 Aligned_cols=56 Identities=25% Similarity=0.305 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhHH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVASASKDE 173 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~~ 173 (606)
...+++..+|.+|.+||++++- ..+ .|+.--.-|.++|-+|...++.+. +++
T Consensus 90 aRm~eme~~i~dL~een~~L~~------------en~--------------~Lr~~n~~L~~~n~el~~~le~~~--~~l 141 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQN------------END--------------SLRAINESLLAKNHELDSELELLR--QEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------HHH--------------HHHHHHHHHHhhhHHHHHHHHHHH--HHH
Confidence 5556777888888888888765 222 266556667888989988888888 888
Q ss_pred HHHH
Q psy10329 174 NEIT 177 (606)
Q Consensus 174 ~~l~ 177 (606)
.+++
T Consensus 142 ~~~~ 145 (292)
T KOG4005|consen 142 AELK 145 (292)
T ss_pred HhhH
Confidence 8888
No 134
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=23.53 E-value=6.4e+02 Score=28.17 Aligned_cols=29 Identities=45% Similarity=0.562 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 91 RLMNDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
...++..++..+++.|+.+..+..+-+.+
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677788888888888777776654
No 135
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.37 E-value=4.2e+02 Score=29.10 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENE 175 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~ 175 (606)
|..=+.++..||.-|+=+++.+. .++++
T Consensus 132 LE~li~~~~EEn~~lqlqL~~l~--~e~~E 159 (401)
T PF06785_consen 132 LEGLIRHLREENQCLQLQLDALQ--QECGE 159 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH--HHHhH
Confidence 55567889999999998888877 66544
No 136
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.28 E-value=6.6e+02 Score=27.10 Aligned_cols=8 Identities=25% Similarity=0.949 Sum_probs=3.8
Q ss_pred chhHHHHH
Q psy10329 23 LDSTILWL 30 (606)
Q Consensus 23 ~~~~~~wl 30 (606)
++.-..|-
T Consensus 128 l~ak~~WY 135 (312)
T smart00787 128 LEAKKMWY 135 (312)
T ss_pred HHHHHHHH
Confidence 44444554
No 137
>KOG2264|consensus
Probab=23.26 E-value=5.1e+02 Score=30.47 Aligned_cols=86 Identities=26% Similarity=0.321 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHhhhccCCCc-chhhc--cCchhhhhhhhcccCc--hHHHHH--hHHhHHhhHH---HHHHHHHHHHH
Q psy10329 25 STILWLTNLLRLLNLLKQYSGE-KAFQT--DNTEVQNAQCLANFDF--REYRQV--LSDTGVQLES---EVDELKTRLMN 94 (606)
Q Consensus 25 ~~~~wl~n~~~l~~~l~qysg~-~~~~~--~nt~~qn~~~l~nfdl--~e~rq~--lsdl~~~le~---~l~~~~~~~~~ 94 (606)
...-|++=+ |.=+|--.|-- .-|.+ +..++||.+.+--.|= ++|-.+ +.+..|.+++ ||.+++ -
T Consensus 27 ~r~~w~~~~--l~iil~~vs~~a~~~lt~~qdA~~~~~~~~~p~~~s~~~~s~~r~~~e~~RI~~sVs~EL~ele----~ 100 (907)
T KOG2264|consen 27 LRFIWFVFI--LYIILYNVSFSAPSWLTTLQDALKQNIENLDPYDASCSGYSIGRILREQKRILASVSLELTELE----V 100 (907)
T ss_pred HHHHHHHHH--HHHHHhhcccccceeeecccccchhcccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 455677722 22222222322 22333 5678888777665554 333332 4555554443 333322 2
Q ss_pred HHHHHHHHHHHHHHhhHHhhHH
Q psy10329 95 DREKYLSEIQGLQDKNIKLSEC 116 (606)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~ 116 (606)
.+.+++++|+++....|++++.
T Consensus 101 krqel~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 101 KRQELNSEIEEINTKIEELKRL 122 (907)
T ss_pred HHHHHHhHHHHHHHHHHHHHHH
Confidence 3445555566666655555553
No 138
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.13 E-value=4.2e+02 Score=27.63 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
+++|+.++.....|+-..+|.+.
T Consensus 80 ~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 80 NQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777676544
No 139
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=23.12 E-value=2.7e+02 Score=29.99 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 144 HYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 144 ~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
.+++.-+..|-+||+-|++|++.+-
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999999776
No 140
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=22.86 E-value=2.3e+02 Score=35.25 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhh-hccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhhhhhH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSK-TYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVASASKD 172 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~~~~~ 172 (606)
.|++++..++++++.+.+++++-|+. ++.. . | +.+.+..|-.+|. +++++++.++ +.
T Consensus 929 ~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~------k----A------p~~vve~e~~kl~----~~~~~l~~l~--~~ 986 (995)
T PTZ00419 929 KELAKLEKKLAKLQKSLESYLKKISIPNYED------K----V------PEDVRKLNDEKID----ELNEEIKQLE--QA 986 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchhhh------c----C------CHHHHHHHHHHHH----HHHHHHHHHH--HH
Confidence 45666777777777777777775532 1111 1 2 5566777888875 5666777777 67
Q ss_pred HHHHHHH
Q psy10329 173 ENEITRM 179 (606)
Q Consensus 173 ~~~l~~~ 179 (606)
+..|+++
T Consensus 987 l~~l~~~ 993 (995)
T PTZ00419 987 IEELKSL 993 (995)
T ss_pred HHHHHHh
Confidence 6666643
No 141
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=22.84 E-value=7.1e+02 Score=28.86 Aligned_cols=30 Identities=7% Similarity=0.134 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
-...++-++..=..|.|++.++. ++|..||
T Consensus 485 YE~QLs~MSEHLasmNeqL~~Q~--eeI~~LK 514 (518)
T PF10212_consen 485 YEEQLSMMSEHLASMNEQLAKQR--EEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 45567888877788999999999 9998888
No 142
>KOG4196|consensus
Probab=22.66 E-value=2.4e+02 Score=26.75 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHhhHHhh
Q psy10329 82 ESEVDELKTRLM-NDREKYLSEIQGLQDKNIKLSECLS 118 (606)
Q Consensus 82 e~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~ 118 (606)
..||+. ++..- .+++.|+.|+.+++-|.+.+..-..
T Consensus 76 k~eLE~-~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e 112 (135)
T KOG4196|consen 76 KHELEK-EKAELQQQVEKLKEENSRLRRELDAYKSKYE 112 (135)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 33333 6666666666666666664444333
No 143
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.50 E-value=4.4e+02 Score=24.25 Aligned_cols=16 Identities=44% Similarity=0.370 Sum_probs=8.6
Q ss_pred HHHHHhhhHHHHHHHh
Q psy10329 152 KLVEENLKLKQALEVA 167 (606)
Q Consensus 152 ~l~~enl~l~e~~~~~ 167 (606)
+|.-||-.|++.++..
T Consensus 40 ~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 40 ALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444666666665544
No 144
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=22.23 E-value=4.9e+02 Score=22.06 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=21.2
Q ss_pred HhHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhh
Q psy10329 73 VLSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLS 114 (606)
Q Consensus 73 ~lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 114 (606)
..=|++-.|+.++.+|+.+.. ++.++++.+.++|+.+-...+
T Consensus 15 ~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 15 QAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666555444433 445555555555554444333
No 145
>PLN02320 seryl-tRNA synthetase
Probab=22.02 E-value=5.8e+02 Score=29.46 Aligned_cols=34 Identities=9% Similarity=0.133 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 85 VDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 85 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
+++ --..+++..++..+++.|+.+..+..+-+.+
T Consensus 92 vd~-l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 92 LEL-VLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 3334466777888888888888877776654
No 146
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.97 E-value=1e+03 Score=25.59 Aligned_cols=27 Identities=4% Similarity=-0.011 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
.+++.++.++..++++....++++.+.
T Consensus 165 ~~l~~~~~~l~~~~~~~~~~~~L~~~g 191 (423)
T TIGR01843 165 AQLQALRQQLEVISEELEARRKLKEKG 191 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444555555555555555555543
No 147
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.63 E-value=5.6e+02 Score=29.74 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=49.3
Q ss_pred CchhhhhhhhcccCchHHHHHhHHhHHhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHH---hhhhcc
Q psy10329 53 NTEVQNAQCLANFDFREYRQVLSDTGVQL-------ESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSEC---LSKTYS 122 (606)
Q Consensus 53 nt~~qn~~~l~nfdl~e~rq~lsdl~~~l-------e~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---l~~~~~ 122 (606)
+.-.++...|.+.|+.+....+.++...| |.|+.+ +....+....+...|+.+++.|..+..- +++++.
T Consensus 259 ~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~A-k~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~ 337 (560)
T PF06160_consen 259 EQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEA-KKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT 337 (560)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999999999977777555 666666 5555566666666677777666655543 334555
Q ss_pred C
Q psy10329 123 T 123 (606)
Q Consensus 123 ~ 123 (606)
.
T Consensus 338 L 338 (560)
T PF06160_consen 338 L 338 (560)
T ss_pred C
Confidence 4
No 148
>COG0188 GyrA Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit [DNA replication, recombination, and repair]
Probab=21.56 E-value=4.8e+02 Score=31.88 Aligned_cols=105 Identities=15% Similarity=0.234 Sum_probs=60.5
Q ss_pred hhhcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHH----HHhh--HHhhHHhhhhccCCcc
Q psy10329 60 QCLANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQGL----QDKN--IKLSECLSKTYSTDVS 126 (606)
Q Consensus 60 ~~l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~~l----~~~~--~~~~~~l~~~~~~~~~ 126 (606)
..++...|.++-+. +--+.+..+=+|+.++.|.| +-+-....-|... +... ...++-|...+..
T Consensus 339 ~~P~~~~L~~iL~~~~~hr~~vi~rR~~~~L~Ka~~R~hileGl~~a~~~iDevI~iIr~s~~~~~a~~~L~~~f~l--- 415 (804)
T COG0188 339 GRPKVLNLKEILSEFLEHRLEVVTRRTEYELNKAEERLHILEGLLIALLNIDEVIEIIRESKDKPEAKEELMARFGL--- 415 (804)
T ss_pred CcceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHcCCCchHHHHHHHHHcCC---
Confidence 45555555544333 22334566667777677766 5554444433332 2221 2444455555555
Q ss_pred CCCCCCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 127 HTQDSSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+.. +.++.+..-+.|||. |=-.++...+.+. +++..|.++|
T Consensus 416 -se~----------Qa~aIl~mrL~rLt~le~~~i~~E~~~L~--~~i~~l~~iL 457 (804)
T COG0188 416 -SEK----------QAEAILDLRLRRLTGLEEEKIEKELKELE--KEIADLEKIL 457 (804)
T ss_pred -cHH----------HHHHHHhhhHHHhhcchHHHHHHHHHHHH--HHHHHHHHHh
Confidence 433 788888888899987 4445666677777 7777666555
No 149
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=21.41 E-value=1.4e+02 Score=31.17 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
|+.||..|-++|+.|=|++--+.
T Consensus 112 L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 112 LRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999877665
No 150
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.30 E-value=3.1e+02 Score=22.72 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 81 LESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 81 le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
+|..+.+|+.+.. +.+++|...+-+.+.+.++++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443 4455555555544444444433
No 151
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=21.02 E-value=1.7e+02 Score=30.37 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 96 REKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
++....+.+.+++||++++++|.-
T Consensus 88 l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 88 LESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333444555778888888887743
No 152
>KOG2391|consensus
Probab=21.01 E-value=1e+03 Score=26.32 Aligned_cols=31 Identities=19% Similarity=0.189 Sum_probs=20.9
Q ss_pred ccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 138 ESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 138 ~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
|.|...+.|-..+...+++-+..++.+-.++
T Consensus 293 ~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~ 323 (365)
T KOG2391|consen 293 EAIECTAPLYKQILECYALDLAIEDAIYSLG 323 (365)
T ss_pred hhhhccchHHHHHHHhhhhhhHHHHHHHHHH
Confidence 4455666677777777777777776666666
No 153
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=20.94 E-value=3.7e+02 Score=25.62 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHhh---HHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHH
Q psy10329 94 NDREKYLSEIQGLQDKN---IKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQ 162 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e 162 (606)
.++.+...+|..|.... +..|.-|.+.+.. . . ..-..-++.|.+|.+||=+|+.
T Consensus 40 ~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~----~------~-----~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 40 AELASKANQLIVLLALAKRNEEAQAQLRQQLAQ----A------R-----ALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----H------H-----HHHHHHHHHHHHHHHcCHHHHH
Confidence 55666666666665444 4455544433332 0 0 1122345667777777766554
No 154
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=20.82 E-value=4.1e+02 Score=28.61 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
+|...+.-+|+-|+++.+.+++.+++.-.. -.+ .+..-..+++.+..|..|--+|+++|...+
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re----~~e--------K~~elEr~K~~~d~L~~e~~~Lre~L~~rd 167 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQRE----YRE--------KIRELERQKRAHDSLREELDELREQLKQRD 167 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777788888777777766554222 001 112223466666666666666666665554
No 155
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.74 E-value=3e+02 Score=21.19 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHh
Q psy10329 80 QLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 80 ~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~ 113 (606)
|+|..-+.|++.-. .+.+.+..|.+.|+++...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444332211 33344444444444444333
No 156
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.60 E-value=9.1e+02 Score=26.27 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH---HHHhcC
Q psy10329 144 HYLKIEVLKLVEENLKLKQALEVASASKDENEIT---RMIVEG 183 (606)
Q Consensus 144 ~~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~---~~~~~~ 183 (606)
..|-+-+.....+|..|++.++.+- .++.+++ |.|.++
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lr--qkl~E~qGD~KlLR~~ 108 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELR--QKLNEAQGDIKLLREK 108 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhchHHHHHHH
Confidence 4466777777778888877777777 7766666 455443
No 157
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=20.58 E-value=7.2e+02 Score=23.40 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=29.1
Q ss_pred HHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhH
Q psy10329 71 RQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 71 rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
|..+++-+-.+-.+|+.+-......+..+.+.|+++-...+++.+
T Consensus 38 rr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~e 82 (126)
T PF07889_consen 38 RRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKE 82 (126)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 344666666666677664444446666677777777777666555
No 158
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.57 E-value=7.1e+02 Score=28.21 Aligned_cols=31 Identities=19% Similarity=0.175 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
.++.|+..+..+.-.++.+++.+. .++..++
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~--~~i~~l~ 247 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELT--DELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh
Confidence 477778888777777777777777 6665555
No 159
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=20.43 E-value=5.5e+02 Score=26.54 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
.+..|.|+..|..-|+++++.+.
T Consensus 79 ~~~~i~r~~eey~~Lk~~in~~R 101 (230)
T PF10146_consen 79 RQEKIQRLYEEYKPLKDEINELR 101 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666555444
No 160
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.35 E-value=5.7e+02 Score=22.42 Aligned_cols=64 Identities=25% Similarity=0.416 Sum_probs=41.3
Q ss_pred HHhhhccCCCcchhhccCchhhhhhhhcccCchHHHHHhHHhHHhhHHHHHHHHH---HHH-HHHHHHHHHHHHHHHhhH
Q psy10329 36 LLNLLKQYSGEKAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVQLESEVDELKT---RLM-NDREKYLSEIQGLQDKNI 111 (606)
Q Consensus 36 l~~~l~qysg~~~~~~~nt~~qn~~~l~nfdl~e~rq~lsdl~~~le~~l~~~~~---~~~-~~~~~~~~~~~~l~~~~~ 111 (606)
|..-++++.|+ +|-..++.| |..+-.+||.-|...+. +.. ++++.++.....++++|.
T Consensus 31 L~~~~R~~~Ge--------------dL~~Ls~~e----L~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~ 92 (100)
T PF01486_consen 31 LQKELRHLMGE--------------DLESLSLKE----LQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENN 92 (100)
T ss_pred HHHHHhccccc--------------cccccchHH----HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777887 344444444 55566666655544222 233 888889999999999998
Q ss_pred HhhHHh
Q psy10329 112 KLSECL 117 (606)
Q Consensus 112 ~~~~~l 117 (606)
.+++-+
T Consensus 93 ~L~~~~ 98 (100)
T PF01486_consen 93 QLRQKI 98 (100)
T ss_pred HHHHHh
Confidence 887633
No 161
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.34 E-value=6.4e+02 Score=24.27 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHH
Q psy10329 84 EVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQA 163 (606)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~ 163 (606)
+++.+..+.+.+-+.+|+++-.-+.|...+.. .. .|+ ++-|..|+.|.-+|+.+
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~------~~----~pD----------------~~kI~aL~kEI~~Lr~k 104 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLT------AN----PPD----------------SSKINAVAKEMENLRQS 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CC----CCC----------------HHHHHHHHHHHHHHHHH
Confidence 44552333337777888887777777766533 11 222 12366777777777776
Q ss_pred HHHhh
Q psy10329 164 LEVAS 168 (606)
Q Consensus 164 ~~~~~ 168 (606)
+..+.
T Consensus 105 L~e~r 109 (143)
T PRK11546 105 LDELR 109 (143)
T ss_pred HHHHH
Confidence 66443
No 162
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=20.29 E-value=4.7e+02 Score=26.25 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
.++.++..|..|+=.|.+++++++ ++..+|.+.+..
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle--~ErdeL~~kf~~ 132 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLE--QERDELYRKFES 132 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 478899999999999999999999 887788744433
No 163
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=20.24 E-value=1.5e+02 Score=23.71 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=26.7
Q ss_pred HhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 79 VQLESEVDELKTRLM-NDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 79 ~~le~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
+-+|..|.+ +++.. -+....+.+|.+|..||..+..-|
T Consensus 7 ~ELe~klka-erE~R~~d~~~a~~rl~~l~~EN~~Lr~eL 45 (52)
T PF12808_consen 7 EELERKLKA-EREARSLDRSAARKRLSKLEGENRLLRAEL 45 (52)
T ss_pred HHHHHHHHH-hHHhccCCchhHHHHHHHHHHHHHHHHHHH
Confidence 446677777 66555 667778888888888887766533
Done!