Query psy10329
Match_columns 606
No_of_seqs 246 out of 538
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 15:13:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f6h_X Myosin-2, type V myosin 100.0 5.5E-63 1.9E-67 534.9 26.6 324 226-586 8-352 (419)
2 3mmi_A Myosin-4; globular tail 100.0 5.3E-57 1.8E-61 478.0 25.2 274 292-598 52-349 (386)
3 3mmi_A Myosin-4; globular tail 98.6 3.6E-08 1.2E-12 105.0 7.9 70 2-86 75-157 (386)
4 2f6h_X Myosin-2, type V myosin 98.6 2.3E-08 7.9E-13 108.2 5.0 63 2-71 71-137 (419)
5 2a2f_X Exocyst complex compone 92.4 5.3 0.00018 41.6 17.7 129 393-537 184-319 (325)
6 2fji_1 Exocyst complex compone 86.5 35 0.0012 35.9 21.3 158 384-564 180-350 (399)
7 2v71_A Nuclear distribution pr 79.8 15 0.00051 35.4 11.2 26 143-168 90-115 (189)
8 2dfs_A Myosin-5A; myosin-V, in 75.7 10 0.00034 45.6 10.7 31 145-177 1020-1050(1080)
9 3s9g_A Protein hexim1; cyclin 72.0 9.2 0.00031 33.0 6.6 56 94-168 37-92 (104)
10 1hjb_A Ccaat/enhancer binding 70.7 6.5 0.00022 33.3 5.4 37 145-183 40-76 (87)
11 1t6f_A Geminin; coiled-coil, c 70.5 6.6 0.00023 27.8 4.4 32 84-116 5-36 (37)
12 3fhn_A Protein transport prote 69.1 41 0.0014 38.5 13.2 148 381-538 509-658 (706)
13 2jee_A YIIU; FTSZ, septum, coi 66.0 22 0.00076 29.7 7.6 22 94-115 20-41 (81)
14 2zxx_A Geminin; coiled-coil, c 62.3 14 0.00046 30.9 5.6 50 70-120 17-67 (79)
15 2wt7_A Proto-oncogene protein 61.4 13 0.00045 29.2 5.2 33 146-180 28-60 (63)
16 1t2k_D Cyclic-AMP-dependent tr 60.9 13 0.00046 28.9 5.1 33 146-180 27-59 (61)
17 1gu4_A CAAT/enhancer binding p 60.4 7.6 0.00026 32.2 3.8 35 145-181 40-74 (78)
18 2v71_A Nuclear distribution pr 59.1 68 0.0023 30.8 10.7 39 74-113 36-75 (189)
19 1ci6_A Transcription factor AT 58.0 16 0.00054 28.9 5.1 33 146-180 28-60 (63)
20 1wlq_A Geminin; coiled-coil; 2 56.0 22 0.00074 29.8 5.8 49 70-119 21-70 (83)
21 2yy0_A C-MYC-binding protein; 55.8 18 0.00061 27.8 4.9 31 149-181 20-50 (53)
22 3m91_A Proteasome-associated A 52.9 31 0.0011 26.3 5.7 36 79-114 12-50 (51)
23 1g6u_A Domain swapped dimer; d 51.6 20 0.00068 26.0 4.2 36 80-115 4-41 (48)
24 3hnw_A Uncharacterized protein 51.1 49 0.0017 30.1 8.0 13 156-168 111-123 (138)
25 1ci6_A Transcription factor AT 50.2 45 0.0015 26.2 6.6 46 69-118 16-61 (63)
26 1x79_B RAB GTPase binding effe 49.7 55 0.0019 28.9 7.7 69 77-168 28-97 (112)
27 3oja_B Anopheles plasmodium-re 49.5 21 0.00072 39.0 6.3 30 146-177 542-571 (597)
28 2ast_A S-phase kinase-associat 49.4 18 0.00063 33.1 4.9 43 521-563 96-139 (159)
29 3mq7_A Bone marrow stromal ant 48.0 1.5E+02 0.0051 26.3 11.0 39 74-112 23-64 (121)
30 3o0z_A RHO-associated protein 47.5 1.4E+02 0.0046 28.2 10.5 19 150-168 113-131 (168)
31 1uii_A Geminin; human, DNA rep 47.1 39 0.0013 28.3 5.9 49 69-118 28-77 (83)
32 2dfs_A Myosin-5A; myosin-V, in 46.8 53 0.0018 39.4 9.5 16 100-115 959-974 (1080)
33 1wt6_A Myotonin-protein kinase 45.8 1.1E+02 0.0036 25.6 8.3 21 155-177 52-72 (81)
34 1jnm_A Proto-oncogene C-JUN; B 43.0 15 0.00053 28.7 2.8 33 146-180 27-59 (62)
35 2p22_A Suppressor protein STP2 42.4 2.2E+02 0.0077 26.8 11.2 66 94-168 70-135 (174)
36 2wvr_A Geminin; DNA replicatio 42.4 38 0.0013 32.8 5.9 58 61-119 82-147 (209)
37 3hnw_A Uncharacterized protein 41.2 1.3E+02 0.0044 27.3 9.1 23 146-168 108-130 (138)
38 1go4_E MAD1 (mitotic arrest de 39.4 31 0.0011 29.9 4.4 19 96-114 21-39 (100)
39 1zvu_A Topoisomerase IV subuni 37.6 61 0.0021 37.1 7.6 102 62-180 312-425 (716)
40 2di0_A Activating signal coint 37.3 36 0.0012 27.7 4.2 29 540-568 14-42 (71)
41 3iv1_A Tumor susceptibility ge 37.3 1.4E+02 0.0048 24.7 7.8 30 146-177 44-73 (78)
42 1wt6_A Myotonin-protein kinase 36.8 69 0.0024 26.7 5.9 38 72-113 34-71 (81)
43 2jee_A YIIU; FTSZ, septum, coi 36.6 1.7E+02 0.0058 24.4 8.2 20 94-113 27-46 (81)
44 1gk4_A Vimentin; intermediate 36.6 1.8E+02 0.006 23.9 11.3 75 73-182 5-79 (84)
45 1t2k_D Cyclic-AMP-dependent tr 36.6 59 0.002 25.1 5.3 24 94-117 36-59 (61)
46 1gd2_E Transcription factor PA 36.5 60 0.002 26.3 5.4 37 77-113 30-69 (70)
47 3mov_A Lamin-B1; LMNB1, B-type 36.2 2E+02 0.0068 24.4 9.4 73 74-181 17-89 (95)
48 1deb_A APC protein, adenomatou 34.9 78 0.0027 24.1 5.3 47 96-168 5-51 (54)
49 3ilw_A DNA gyrase subunit A; D 34.3 71 0.0024 34.8 7.2 106 61-182 322-441 (470)
50 4gkw_A Spindle assembly abnorm 33.7 2.7E+02 0.0093 25.2 10.0 35 86-120 49-86 (167)
51 3m9b_A Proteasome-associated A 33.6 30 0.001 34.7 3.8 37 79-115 57-96 (251)
52 3tnu_A Keratin, type I cytoske 33.6 2.5E+02 0.0086 24.8 11.1 33 146-180 96-128 (131)
53 2zqm_A Prefoldin beta subunit 33.1 2.2E+02 0.0075 24.0 9.8 33 146-180 75-107 (117)
54 3oja_B Anopheles plasmodium-re 32.8 1.7E+02 0.0057 31.7 10.2 18 96-113 472-489 (597)
55 3tnu_B Keratin, type II cytosk 31.4 2.7E+02 0.0092 24.5 10.5 33 146-180 94-126 (129)
56 1x8y_A Lamin A/C; structural p 30.4 2.3E+02 0.0079 23.4 9.8 69 79-182 13-81 (86)
57 2w6a_A ARF GTPase-activating p 30.0 1.9E+02 0.0066 22.7 7.0 47 67-114 12-61 (63)
58 1ez3_A Syntaxin-1A; three heli 30.0 1.9E+02 0.0065 24.7 8.2 56 94-165 12-67 (127)
59 1fs1_B SKP1, cyclin A/CDK2-ass 29.4 41 0.0014 30.2 3.8 91 458-563 42-134 (141)
60 4emc_A Monopolin complex subun 29.2 56 0.0019 31.4 4.7 28 149-178 21-48 (190)
61 3lay_A Zinc resistance-associa 29.2 3.6E+02 0.012 25.3 10.8 67 76-168 67-133 (175)
62 3ol1_A Vimentin; structural ge 29.1 2.9E+02 0.0099 24.1 11.5 91 69-181 17-107 (119)
63 3ghg_A Fibrinogen alpha chain; 29.1 2.1E+02 0.0073 31.5 9.7 45 66-111 110-155 (562)
64 2wt7_A Proto-oncogene protein 27.6 1E+02 0.0035 24.0 5.3 24 94-117 37-60 (63)
65 3hr0_A COG4; conserved oligome 27.3 4.7E+02 0.016 25.9 15.5 101 459-564 144-249 (263)
66 3oja_A Leucine-rich immune mol 26.9 1.1E+02 0.0039 32.4 7.3 23 94-116 435-457 (487)
67 1jnm_A Proto-oncogene C-JUN; B 26.4 1.2E+02 0.0041 23.4 5.5 42 72-117 18-59 (62)
68 3cve_A Homer protein homolog 1 26.0 96 0.0033 25.3 4.9 39 78-120 16-54 (72)
69 1hjb_A Ccaat/enhancer binding 25.9 1.5E+02 0.005 24.9 6.2 26 94-119 50-75 (87)
70 4gkw_A Spindle assembly abnorm 24.9 3.9E+02 0.013 24.2 9.6 23 146-168 58-80 (167)
71 3nmd_A CGMP dependent protein 24.4 1.7E+02 0.0059 23.8 6.1 24 94-117 47-70 (72)
72 1gd2_E Transcription factor PA 24.3 1.8E+02 0.006 23.5 6.2 15 154-168 49-63 (70)
73 3a7p_A Autophagy protein 16; c 24.1 2.7E+02 0.0092 25.8 8.2 30 146-177 101-130 (152)
74 2xcs_B DNA gyrase subunit B, D 24.1 76 0.0026 36.2 5.4 106 61-182 543-662 (692)
75 3na7_A HP0958; flagellar bioge 24.0 4.4E+02 0.015 25.7 10.5 20 145-164 94-113 (256)
76 2inr_A DNA topoisomerase 4 sub 23.6 1.2E+02 0.0041 33.4 6.7 106 61-182 360-479 (514)
77 4h22_A Leucine-rich repeat fli 23.0 2.6E+02 0.0087 24.3 7.3 47 74-120 35-84 (103)
78 2dkz_A Hypothetical protein LO 23.0 64 0.0022 27.1 3.4 58 501-564 18-75 (84)
79 3a7p_A Autophagy protein 16; c 22.5 4E+02 0.014 24.6 9.0 65 74-164 66-133 (152)
80 3m91_A Proteasome-associated A 22.2 1.5E+02 0.0051 22.5 5.0 34 145-180 13-46 (51)
81 1gu4_A CAAT/enhancer binding p 22.0 1.6E+02 0.0055 24.2 5.6 26 94-119 50-75 (78)
82 1wgl_A TOLL-interacting protei 21.6 84 0.0029 24.4 3.7 30 539-568 9-38 (59)
83 3qne_A Seryl-tRNA synthetase, 21.3 4.6E+02 0.016 28.5 10.8 20 555-574 409-431 (485)
84 2xkj_E Topoisomerase IV; type 20.3 2.4E+02 0.0082 32.6 8.5 104 62-182 606-721 (767)
No 1
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-63 Score=534.88 Aligned_cols=324 Identities=21% Similarity=0.334 Sum_probs=267.9
Q ss_pred cccccceeecccHHHHHHhhhhccc--ccccchhcchhhhhhhhhcccccccccccchHHHHHHhhccChhHHHHHHHHH
Q psy10329 226 TYLGMFEFEKSDINIIMKRLITDKF--LEGISVVFNACNVIRKKERTYLGMFEFEKSDINIIMKRLITGLPAYIFFMCVR 303 (606)
Q Consensus 226 ~~~g~le~~~~de~~~l~~li~dl~--p~~~~~~~~~~~~~~~~~~~~~qml~f~~~Dl~~i~~~L~P~~PAyiLfmciR 303 (606)
+...+|||.+.-.+.+++.+|..++ +.++ ..++ ..-.+.+|||+||+|+|
T Consensus 8 ~~~~ll~~~~~~~~ei~~~l~~~~~ip~~~~----~~~~------------------------~~~~~l~PA~il~~cl~ 59 (419)
T 2f6h_X 8 ELYRLLEDTEILNQEITEGLLKGFEVPDAGV----AIQL------------------------SKRDVVYPARILIIVLS 59 (419)
T ss_dssp HHHHHHHCHHHHHHHHHHTTTTTCCCCCCST----TCCC------------------------CHHHHSHHHHHHHHHHH
T ss_pred HHHHHHhhhhhccHHHHHHHHHHccCCCCcc----ccCC------------------------CCCCcchHHHHHHHHHH
Confidence 5678999998888999999988665 2222 0011 01123599999999999
Q ss_pred hhhhcCChHHHHHHHHHHHHHHHHHHHhhc-CC-cccchhHHHhHHHHHHHH--hhhcccccccccchhhhhhhhccccc
Q psy10329 304 HTDYINDEEKVRCLLSAIILNVKRVVKKRY-ED-LDSTILWLTNLLRLLNLL--KQYSGEKAFQTDNTEVQNAQCLANFD 379 (606)
Q Consensus 304 ~ad~~~d~~~l~~LL~~ii~~Ik~vv~~~~-~D-l~~lafWLSN~~eLL~fL--kq~s~~~~f~~~nt~~Qn~~~L~~fd 379 (606)
++|+.+...+.++||.+++++|+++++++. +| ++.++|||||+++||||| ++++.. .+++ +++++.++|
T Consensus 60 ~~~~~~~~~~~~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~~-----~~~~--~~~~~~~~~ 132 (419)
T 2f6h_X 60 EMWRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSIL-----TEET--FKNGMTDEE 132 (419)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCC------CCHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhhh-----ccCc--cccccchhh
Confidence 889988899999999999999999999986 44 688999999999999999 666531 1111 345566666
Q ss_pred hHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCC-CCCCCCC--CCcccHHHHHH
Q psy10329 380 FRE-------YRQVLSDTGVWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRL-GRSESVG--SSPGDLQALLM 449 (606)
Q Consensus 380 l~E-------~~~~L~dLi~~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~-kR~~s~~--~s~~~i~~IL~ 449 (606)
+.+ |+++|++++.+||++++++++++|+|+++||||+++++||+.+.++.|+ +|.++.+ .++..|..+|+
T Consensus 133 ~~~y~~l~~~~~~~L~~l~~~iy~~li~~l~k~L~p~l~paIl~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~Il~~L~ 212 (419)
T 2f6h_X 133 YKEYVSLVTELKDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGETSGFLNKIFANTEEYTMDDILTFFN 212 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSTTTTC---------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccccccccccccccccCCCccCHHHHHHHHH
Confidence 544 4899999999999999999999999999999999999999987655565 5544332 23567777799
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHH
Q psy10329 450 SFYKLLVLHGIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQ 529 (606)
Q Consensus 450 ~~~~lL~~~~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~Q 529 (606)
+++++|+.|+|||.++.|+|+|+||||||++||+||+|++||+|++|+||||||+.||+||+++|+ +.|+.+|+|++|
T Consensus 213 ~~~~~L~~~~V~~~l~~Q~fsQlf~~In~~lFN~LL~r~~~cs~s~G~qIr~nls~Le~W~~~~~l--~~a~~~L~~l~Q 290 (419)
T 2f6h_X 213 SIYWCMKSFHIENEVFHAVVTTLLNYVDAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGL--TDGTECLQHLIQ 290 (419)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTC--TTHHHHTHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCcccchhhHHHHHhhHHHHHHHHHHcCC--hhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 568889999999
Q ss_pred HHhhhhccC-chhhHHHHHhhcccCCHHHHHHHHhcCCCC----CCCchHHhhhhhhhhccc
Q psy10329 530 ASQLLQARK-TQEDVNTVCEMCNKMSTNQLESLENELNRA----RTENADLRHVMLKENKMN 586 (606)
Q Consensus 530 AaqLLQ~~K-T~~D~~si~~~C~~Ln~~QL~kIL~~Y~p~----rV~~~fI~~v~~~~~~~~ 586 (606)
|++|||++| +.+|+++++++|++|||+||+|||++|+|+ +||++||..+.....+++
T Consensus 291 a~~lLq~~k~~~~d~~~i~~~C~~Ln~~Ql~~il~~Y~~d~~e~~v~~~~i~~v~~~~~~~~ 352 (419)
T 2f6h_X 291 TAKLLQVRKYTIEDIDILRGICYSLTPAQLQKLISQYQVADYESPIPQEILRYVADIVKKEA 352 (419)
T ss_dssp HHHHTTSCCSSHHHHHHHHHHTTTSCHHHHHHHHHHCCCCTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCchhhHHHHHHHhhcCCHHHHHHHHHhCCCccCCCCCCHHHHHHHHHHHhccc
Confidence 999999999 899999999999999999999999999999 899999998876655543
No 2
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-57 Score=477.98 Aligned_cols=274 Identities=16% Similarity=0.222 Sum_probs=233.9
Q ss_pred ChhHHHHHHHHHhhhhcCChHHHHHHHHHHHHHHHHHHHh-hcCC-cccchhHHHhHHHHHHHH--hhhcccccccccch
Q psy10329 292 GLPAYIFFMCVRHTDYINDEEKVRCLLSAIILNVKRVVKK-RYED-LDSTILWLTNLLRLLNLL--KQYSGEKAFQTDNT 367 (606)
Q Consensus 292 ~~PAyiLfmciR~ad~~~d~~~l~~LL~~ii~~Ik~vv~~-~~~D-l~~lafWLSN~~eLL~fL--kq~s~~~~f~~~nt 367 (606)
.+|||+||||+|++|+.++..++++||.+++++|++++++ +.+| +.+++|||||+++|++|+ +++ |+..+
T Consensus 52 l~PA~ii~~~~~~m~~~gl~~~s~~fl~~v~~~I~~~v~~~~~~d~i~~g~FWLsN~~~l~sFv~~~q~-----~~~~~- 125 (386)
T 3mmi_A 52 LGPIHVITTVVSSLVRNGLLIQSSKFISKVLLTVESIVMSLPKDETMLGGIFWLSNLSRLPAFAANQKT-----LYEAN- 125 (386)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTTHHHHHHHHHT-----TC----
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccccchHHHHhHHHHHHHHHHHHH-----HHHcc-
Confidence 4999999999999999999999999999999999999998 4566 899999999999999974 554 23322
Q ss_pred hhhhhhhccccc-----hHHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCC-CCCCCC
Q psy10329 368 EVQNAQCLANFD-----FREYRQVLSDTGV----WIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRL-GRSESV 437 (606)
Q Consensus 368 ~~Qn~~~L~~fd-----l~E~~~~L~dLi~----~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~-kR~~s~ 437 (606)
.|| +.+|+++|+++.. +||++|++.++++|+|+ +|++... ++ +|..+
T Consensus 126 ---------~~d~y~~ll~e~r~~l~~L~~~~~e~IY~~~i~~lkk~L~~i-lP~~~~~------------~~~k~~~~- 182 (386)
T 3mmi_A 126 ---------GGDEKDKLTLIYLNDLENETLKVFDKIYSTWLVKFMKHASAH-IEIFDMV------------LNEKLFKN- 182 (386)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTHHHHH------------TCGGGSSS-
T ss_pred ---------ChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh-ccccccc------------ccccccCC-
Confidence 155 7899999999999 99999999999999995 5877522 12 33322
Q ss_pred CCCcc---cHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhCC
Q psy10329 438 GSSPG---DLQALLMSFYKLLVLHGIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNK 514 (606)
Q Consensus 438 ~~s~~---~i~~IL~~~~~lL~~~~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~g 514 (606)
++.+ .+.++|++++++|+.|+|||.++.|+|+|+||||||++||+||+|++||+|++|+||||||+.||+||++ |
T Consensus 183 -~~~~s~~~Il~~L~~~~~~L~~~~V~p~li~QlfsQLF~fIna~lFN~LLlRr~~cs~s~G~qIr~NLs~LEeW~~~-~ 260 (386)
T 3mmi_A 183 -SGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDLITKCPALNWKYGYEVDRNIERLVSWFEP-R 260 (386)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHHHHHHHTT-T
T ss_pred -CCccCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHccCcccCcchHHHHHhhHHHHHHHHHh-c
Confidence 2234 4455599999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCcchHHhhchhHHHHHhhhhccC-chhhHHHHHhhcccCCHHHHHHHHhcCCCC-----CCCchHHhhhhhhhhcccc-
Q psy10329 515 MADGEINEQLSPLIQASQLLQARK-TQEDVNTVCEMCNKMSTNQLESLENELNRA-----RTENADLRHVMLKENKMNF- 587 (606)
Q Consensus 515 L~~~~a~~~L~pL~QAaqLLQ~~K-T~~D~~si~~~C~~Ln~~QL~kIL~~Y~p~-----rV~~~fI~~v~~~~~~~~~- 587 (606)
+ +.|+++|+|++||++|||++| +.+|+++++++|++|||+||+|||++|+|+ +||++|++.+.+...+++.
T Consensus 261 l--~~a~~~L~~L~QA~~LLQ~~K~t~~Di~~i~~~C~~Lsp~QL~kIL~~Y~p~~~~E~~V~~e~i~~v~~~lk~~~~~ 338 (386)
T 3mmi_A 261 I--EDVRPNLIQIIQAVKILQLKISNLNEFKLLFDFWYALNPAQIQAILLKYKPANKGEAGVPNEILNYLANVIKRENLS 338 (386)
T ss_dssp S--SCCGGGGHHHHHHHHHHHCCCCCHHHHHHHHTTCCSSCHHHHHHHHHTBCCC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred c--HHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHhcccCCHHHHHHHHHhCcCCCCCCCCCCHHHHHHHHHHHhccccc
Confidence 8 567789999999999999998 999999999999999999999999999998 8999999988776655543
Q ss_pred CCChhhHhhhc
Q psy10329 588 VTEDEQLLLAF 598 (606)
Q Consensus 588 ~~~~~~i~e~f 598 (606)
...+.+||-|.
T Consensus 339 ~~~~~~i~~~~ 349 (386)
T 3mmi_A 339 LPGKMEIMLSA 349 (386)
T ss_dssp CSSCCCSSCCC
T ss_pred CCcchhhhhcc
Confidence 33444555543
No 3
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=98.64 E-value=3.6e-08 Score=104.96 Aligned_cols=70 Identities=23% Similarity=0.292 Sum_probs=56.9
Q ss_pred cchHHHHHHHHHHHHHh-hcCC-chhHHHHHHHHHHHHh--hhccCCCcchhhccCchhhhhhhhcccC-----chHHHH
Q psy10329 2 RCLLSAIILNVKRVVKK-RYED-LDSTILWLTNLLRLLN--LLKQYSGEKAFQTDNTEVQNAQCLANFD-----FREYRQ 72 (606)
Q Consensus 2 ~~l~~~~~~~ik~~~k~-~~~d-~~~~~~wl~n~~~l~~--~l~qysg~~~~~~~nt~~qn~~~l~nfd-----l~e~rq 72 (606)
++||++++++|++++++ +++| +++.+|||+|+++|++ |++|| |+.+|| || ++|||+
T Consensus 75 ~~fl~~v~~~I~~~v~~~~~~d~i~~g~FWLsN~~~l~sFv~~~q~-----~~~~~~----------~d~y~~ll~e~r~ 139 (386)
T 3mmi_A 75 SKFISKVLLTVESIVMSLPKDETMLGGIFWLSNLSRLPAFAANQKT-----LYEANG----------GDEKDKLTLIYLN 139 (386)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHTTHHHHHHHHHT-----TC------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCccccccchHHHHhHHHHHHHHHHHHH-----HHHccC----------hhHHHHHHHHHHH
Confidence 57999999999999999 7888 9999999999999999 99998 566664 99 999999
Q ss_pred HhHHhHH----hhHHHHH
Q psy10329 73 VLSDTGV----QLESEVD 86 (606)
Q Consensus 73 ~lsdl~~----~le~~l~ 86 (606)
.|+++++ .|=..+.
T Consensus 140 ~l~~L~~~~~e~IY~~~i 157 (386)
T 3mmi_A 140 DLENETLKVFDKIYSTWL 157 (386)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 9999999 5444443
No 4
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport, vacuole binding, secreatory vescIle binding, structural protein; 2.25A {Saccharomyces cerevisiae}
Probab=98.59 E-value=2.3e-08 Score=108.16 Aligned_cols=63 Identities=19% Similarity=0.422 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHHHHHhhc-CC-chhHHHHHHHHHHHHhhh--ccCCCcchhhccCchhhhhhhhcccCchHHH
Q psy10329 2 RCLLSAIILNVKRVVKKRY-ED-LDSTILWLTNLLRLLNLL--KQYSGEKAFQTDNTEVQNAQCLANFDFREYR 71 (606)
Q Consensus 2 ~~l~~~~~~~ik~~~k~~~-~d-~~~~~~wl~n~~~l~~~l--~qysg~~~~~~~nt~~qn~~~l~nfdl~e~r 71 (606)
++||+.++++|+++++++. +| ++.++|||+|+++|+|+| +||++ ..|++ |++|+++||+.+|.
T Consensus 71 ~~ll~~ii~~I~~~v~~~~~~d~i~~lafWLSN~~~LL~~L~~k~~~~-----~~~~~--~~~~~~~~~~~~y~ 137 (419)
T 2f6h_X 71 ESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSI-----LTEET--FKNGMTDEEYKEYV 137 (419)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCC------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHhhhhh-----hccCc--cccccchhhHHHHH
Confidence 4799999999999999986 55 799999999999999999 88883 34555 78999999999885
No 5
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=92.41 E-value=5.3 Score=41.56 Aligned_cols=129 Identities=15% Similarity=0.090 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCCCCCCCCCCCcccHHH---HHHHHHHHHHhcCCCHHHHHHHH
Q psy10329 393 WIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRLGRSESVGSSPGDLQA---LLMSFYKLLVLHGIDMEIINQVF 469 (606)
Q Consensus 393 ~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~kR~~s~~~s~~~i~~---IL~~~~~lL~~~~V~p~Li~QlF 469 (606)
.+...++..+..+|...+ .+-+++=.|... ++.+..-+.+ .|..++. ..-++++.+..-++
T Consensus 184 ~Ae~~I~~~v~~KIDdfl--~la~yDW~~~~~------------~~~ps~yi~dli~fL~~~f~--sl~~LP~~v~~~~~ 247 (325)
T 2a2f_X 184 DAEKQVGLRICSKIDEFF--ELSAYDWLLVEP------------PGIASAFITDMISYLKSTFD--SFAFKLPHIAQAAC 247 (325)
T ss_dssp HHHHHHHHHHHHHHHHHH--TTCCTTCC----------------CCSCCHHHHHHHHHHHHHHH--TTTTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--HhcccCCCCCCC------------CCCccHHHHHHHHHHHHHHH--HHHcCCHHHHHHHH
Confidence 445566667777777753 333333222111 0111122333 3888887 36799999999999
Q ss_pred HHHHHhhhHHHHHHHhhcC-cccccchhhHHHhchhHHHHHHHh---CCCCcchHHhhchhHHHHHhhhhcc
Q psy10329 470 KQLYYYIGASSLNNLLLRK-ELCHWTRGMQIRYNLSHLEQFTRD---NKMADGEINEQLSPLIQASQLLQAR 537 (606)
Q Consensus 470 sQLF~fIna~lFN~LLlrk-~~cswskG~QIR~NLS~LEeW~r~---~gL~~~~a~~~L~pL~QAaqLLQ~~ 537 (606)
...|.+|+..+.+-|+... +..+-.-=.++...|..+|+.+.+ .|+.++.....|..|+|.++||+..
T Consensus 248 ~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll~~~ 319 (325)
T 2a2f_X 248 RRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLILE 319 (325)
T ss_dssp HHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 9999999999999777542 567777778899999999999988 5555566788999999999999863
No 6
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=86.51 E-value=35 Score=35.87 Aligned_cols=158 Identities=8% Similarity=-0.001 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCcccCCCCCCCCCCCCCCCCcccHHHH---HHHHHHHHHhcCC
Q psy10329 384 RQVLSDTGVWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKPSRLGRSESVGSSPGDLQAL---LMSFYKLLVLHGI 460 (606)
Q Consensus 384 ~~~L~dLi~~iy~~li~~i~k~L~~livpAiLe~esi~g~~~~k~~g~kR~~s~~~s~~~i~~I---L~~~~~lL~~~~V 460 (606)
..-+.++.....+.++..+-..|+|. .+.+. + ++-.. ++ .+..| +..++.-++ -++
T Consensus 180 ~~~f~~l~~~~~~~L~~~if~dl~p~-~~~lf---------t------~~W~~--~~--~v~~i~~ti~dy~~d~~-~~L 238 (399)
T 2fji_1 180 LDGFAEVAQCSSLGLITLMFDDLRKP-YQEIF---------S------KTWYM--GS--QAQQIADTLDEYLLDIK-PQM 238 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHH-HTTTT---------S------GGGTT--CC--HHHHHHHHHHHHHHHHG-GGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhC---------C------chhcC--Cc--HHHHHHHHHHHHHHHHH-HHh
Confidence 34556677777777777777777774 22221 1 11111 11 34444 555554443 479
Q ss_pred CHHHHHHHHHHHHHhhhHHHHHHHhhcCcccc---cchhhHHHhchhHHHHHHHhCCCCcch----HHhhchhHHHHHhh
Q psy10329 461 DMEIINQVFKQLYYYIGASSLNNLLLRKELCH---WTRGMQIRYNLSHLEQFTRDNKMADGE----INEQLSPLIQASQL 533 (606)
Q Consensus 461 ~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cs---wskG~QIR~NLS~LEeW~r~~gL~~~~----a~~~L~pL~QAaqL 533 (606)
+|.+..-++..+...+-...++.|+. +.-|. -.-|-+|+-.+..|.+-+.+.+-.... +...+..|-+.+.
T Consensus 239 ~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~- 316 (399)
T 2fji_1 239 NSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD- 316 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHH-
Confidence 99999999999999999999999998 65565 566889999999999999887763222 6788899999999
Q ss_pred hhccC-c--hhhHHHHHhhcccCCHHHHHHHHhc
Q psy10329 534 LQARK-T--QEDVNTVCEMCNKMSTNQLESLENE 564 (606)
Q Consensus 534 LQ~~K-T--~~D~~si~~~C~~Ln~~QL~kIL~~ 564 (606)
|.+.+ + ...|..+....|.+++..+.+||..
T Consensus 317 L~~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~ 350 (399)
T 2fji_1 317 LSCEPIDSILDIWQKYLEVYWDSRIDLLVGILKC 350 (399)
T ss_dssp HHHSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTT
T ss_pred hcCCcHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 88877 3 4778888889999999999999953
No 7
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.78 E-value=15 Score=35.41 Aligned_cols=26 Identities=8% Similarity=-0.026 Sum_probs=18.8
Q ss_pred chhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 143 DHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 143 ~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
-+.|+.|++.|..+|-.|+..+-.++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888888888877776665555
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=75.66 E-value=10 Score=45.57 Aligned_cols=31 Identities=23% Similarity=0.129 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
-|+..++.|..||-.|+++++.++ ..+.+..
T Consensus 1020 ~L~~kv~~L~~e~~~L~qq~~~l~--~~~~~~~ 1050 (1080)
T 2dfs_A 1020 ETEQLVSELKEQNTLLKTEKEELN--RRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 478888999999999999998888 5444443
No 9
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.05 E-value=9.2 Score=33.04 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
.+.-.+...++++.+|+.+++.. ++.. . + ++.. |..||.||+.||..|..+-+.-.
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~-~~~~--------~----~-----~v~e-Le~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLE-SKRL--------D----A-----RVRE-LELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHH--------H----H-----HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccc--------h----h-----hHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 67778888899999999998874 2221 1 2 2332 88999999999999887655433
No 10
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=70.71 E-value=6.5 Score=33.31 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHhcC
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEITRMIVEG 183 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~~~ 183 (606)
.+++++..|..||..|+.+++.+. +++..|+.++...
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~--~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLS--RELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHC
Confidence 378899999999999999999999 9999999888654
No 11
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=70.54 E-value=6.6 Score=27.79 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHH
Q psy10329 84 EVDELKTRLMNDREKYLSEIQGLQDKNIKLSEC 116 (606)
Q Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 116 (606)
-|++ -...|.+++.-..||.+|++||++++++
T Consensus 5 ~L~E-NekLhk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 5 ALKE-NEKLHKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 3555 5666789999999999999999999873
No 12
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=69.06 E-value=41 Score=38.46 Aligned_cols=148 Identities=13% Similarity=0.108 Sum_probs=99.1
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhh-hhhhccCCCCcccCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHHhc
Q psy10329 381 REYRQVLSD-TGVWIYQAVVRFMEEKINSIVI-PAILEFESIPVMSSGKPSRLGRSESVGSSPGDLQALLMSFYKLLVLH 458 (606)
Q Consensus 381 ~E~~~~L~d-Li~~iy~~li~~i~k~L~~liv-pAiLe~esi~g~~~~k~~g~kR~~s~~~s~~~i~~IL~~~~~lL~~~ 458 (606)
..|.....+ ....+-..+++.++..+.+..- +... +++..++..+ .-..+|+.+......+|...+..|...
T Consensus 509 s~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s~W~---s~~~~~~~~~---~~~lspSaEL~~~L~~L~~~L~~L~~~ 582 (706)
T 3fhn_A 509 NDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWS---TLEMSVDENI---GPSSVPSAELVNSINVLRRLINKLDSM 582 (706)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHCCGGG---TCCCC---------CCCCCCGGGHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCc---ccCCCCcccc---cccCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 455555555 5555666666666666666533 1111 1111000000 000111112345566799999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHHHHhhhhccC
Q psy10329 459 GIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARK 538 (606)
Q Consensus 459 ~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqLLQ~~K 538 (606)
-+++.....+..++..=|+..+|+.++++ .-.+..-|.|+.+=+..|-.=+. ++++.+...|..+.+++.||-++.
T Consensus 583 lL~~~~f~~IwR~ia~~Ld~yL~e~IL~~-nkFS~~Ga~Qf~~D~~~L~~v~~---lp~~~~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 583 DIPLAISLKVKNELLNVIVNYFTESILKL-NKFNQNGLNQFLHDFKSLSSILS---LPSHATNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTTTT-SCBCHHHHHHHHHHHHHHHTTSC---CCTTCCCHHHHHHHHHHHHHGGGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CccCHHHHHHHHHHHHHHHHHhc---CCCcchhhHHHHHHHHHHHcCCCC
Confidence 89999999999999999999999999995 45788899999998888654444 544444568999999999999876
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=66.03 E-value=22 Score=29.68 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
+.+.-++.||+.|+++|..+.+
T Consensus 20 dtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6688888888888888887655
No 14
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=62.33 E-value=14 Score=30.85 Aligned_cols=50 Identities=24% Similarity=0.324 Sum_probs=40.8
Q ss_pred HHHHhHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 70 YRQVLSDTG-VQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 70 ~rq~lsdl~-~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
|.+.+.+-. ..|+.-|++ -+..|++++....+|..|++||..++.++...
T Consensus 17 YWk~lAE~RR~AL~eaL~E-N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 17 YWKEVAEQRRKALYEALKE-NEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665544 467888998 88889999999999999999999998877554
No 15
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=61.45 E-value=13 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
|+.++..|..+|-.|+.+++.+. .++..|+.++
T Consensus 28 Le~~v~~L~~~n~~L~~ei~~L~--~e~~~Lk~~l 60 (63)
T 2wt7_A 28 LQAETDQLEDEKSALQTEIANLL--KEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 88899999999999999999999 8888888555
No 16
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.90 E-value=13 Score=28.89 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
|+.++..|+.+|-+|+.++..+. +++..|+.++
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~--~e~~~Lk~~l 59 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLR--NEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 77788888889999999999888 8888887544
No 17
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.39 E-value=7.6 Score=32.23 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
.+++++..|..||..|+.+|+.+. +++..|+.++.
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~--~E~~~Lr~ll~ 74 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLS--RELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 378899999999999999999999 99999986663
No 18
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=59.11 E-value=68 Score=30.81 Aligned_cols=39 Identities=15% Similarity=0.189 Sum_probs=18.6
Q ss_pred hHHhHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHh
Q psy10329 74 LSDTGVQLESEVDELKTRLM-NDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~ 113 (606)
+..-++.||.||+. +=... +....++..+.+|..|.+..
T Consensus 36 FqesSrELE~ELE~-eL~~~Ek~~~~L~~~~~~L~~E~e~~ 75 (189)
T 2v71_A 36 FQEGSRELEAELEA-QLVQAEQRNRDLQADNQRLKYEVEAL 75 (189)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554 33333 44445555555555555443
No 19
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=58.00 E-value=16 Score=28.86 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
|..++..|..+|-+|+.+++.+. .++.-|+.++
T Consensus 28 le~~~~~L~~~N~~L~~~i~~L~--~E~~~Lk~ll 60 (63)
T 1ci6_A 28 LTGECKELEKKNEALKERADSLA--KEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 78889999999999999999999 8888888555
No 20
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=55.99 E-value=22 Score=29.84 Aligned_cols=49 Identities=24% Similarity=0.331 Sum_probs=39.0
Q ss_pred HHHHhHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 70 YRQVLSDTG-VQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 70 ~rq~lsdl~-~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
|.+.+.+-. +.|+.-|++ -...|++++..+.+|..|+++|+.++.+-.+
T Consensus 21 YWk~lAE~Rr~AL~eaL~E-N~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 21 YWKEVAEQRRKALYEALKE-NEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556655443 467888888 8888899999999999999999999885543
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=55.75 E-value=18 Score=27.78 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=24.9
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 149 EVLKLVEENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 149 e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
|+..|..||-+|+.+++.+. +++.+|++.+.
T Consensus 20 d~eaLk~E~~eLk~k~~~L~--~~~~el~~~l~ 50 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIV--EENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHh
Confidence 67777788888888888888 88888886553
No 22
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=52.89 E-value=31 Score=26.33 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=24.7
Q ss_pred HhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhh
Q psy10329 79 VQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLS 114 (606)
Q Consensus 79 ~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 114 (606)
+.+..++..|-.+.. +.+.+.+.+|..|+++.+++.
T Consensus 12 ~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 12 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555544444 777888888888888888763
No 23
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=51.65 E-value=20 Score=26.01 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 80 QLESEVDELKTRLM--NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 80 ~le~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
.+.+|||+++++-. +|+..+.+|++.|......++.
T Consensus 4 alkselqalkkegfspeelaaleselqalekklaalks 41 (48)
T 1g6u_A 4 ALKSELQALKKEGFSPEELAALESELQALEKKLAALKS 41 (48)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788898777776 8888999999888877665543
No 24
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=51.07 E-value=49 Score=30.07 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=4.9
Q ss_pred HhhhHHHHHHHhh
Q psy10329 156 ENLKLKQALEVAS 168 (606)
Q Consensus 156 enl~l~e~~~~~~ 168 (606)
++-+|+++++.+.
T Consensus 111 e~~~l~~~~~~l~ 123 (138)
T 3hnw_A 111 EIKELKSEINKYQ 123 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 25
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=50.15 E-value=45 Score=26.18 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=31.3
Q ss_pred HHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhh
Q psy10329 69 EYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLS 118 (606)
Q Consensus 69 e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 118 (606)
-||+.=.+-.-.+|.+++.|+ .+..+|+.+|+.|+.|+..+.++|.
T Consensus 16 R~R~KKk~~~~~le~~~~~L~----~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELE----KKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356555555666666666643 4466778888888888888877664
No 26
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=49.66 E-value=55 Score=28.92 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=41.7
Q ss_pred hHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHH
Q psy10329 77 TGVQLESEVDELKTRLM-NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVE 155 (606)
Q Consensus 77 l~~~le~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ 155 (606)
....||..+.. .++.| .++..|...++.-......+++.+++. ..-+++++.+|+.
T Consensus 28 ~r~~Le~~w~~-k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~----------------------q~~vq~qL~~Lt~ 84 (112)
T 1x79_B 28 DKQELEDFIKQ-SSEDSSHQISALVLRAQASEILLEELQQGLSQA----------------------KRDVQEQMAVLMQ 84 (112)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 33456666666 66666 777777777777777777777755433 2237888888877
Q ss_pred HhhhHHHHHHHhh
Q psy10329 156 ENLKLKQALEVAS 168 (606)
Q Consensus 156 enl~l~e~~~~~~ 168 (606)
.==.+.+++..+.
T Consensus 85 ~Re~V~~eL~rLQ 97 (112)
T 1x79_B 85 SREQVSEELVRLQ 97 (112)
T ss_dssp HHHHHHTC-----
T ss_pred HHHHHHHHHHHHH
Confidence 6555555555555
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.46 E-value=21 Score=38.97 Aligned_cols=30 Identities=10% Similarity=0.013 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
++.|+.++-..--..++++..+. ++...++
T Consensus 542 ~~~~~~~le~~~~~~~~~~~~l~--~e~~~~~ 571 (597)
T 3oja_B 542 LEQENIALEKQLDNKRAKQAELR--QETSLKR 571 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHhhhHHHHHHHhhhhhHHHHHH--HHHHHHH
Confidence 33455555443333444444444 4444443
No 28
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=49.41 E-value=18 Score=33.11 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=30.8
Q ss_pred HhhchhHHHHHhhhhccC-chhhHHHHHhhcccCCHHHHHHHHh
Q psy10329 521 NEQLSPLIQASQLLQARK-TQEDVNTVCEMCNKMSTNQLESLEN 563 (606)
Q Consensus 521 ~~~L~pL~QAaqLLQ~~K-T~~D~~si~~~C~~Ln~~QL~kIL~ 563 (606)
...+..|+.||+.|+++. -.---..+.++-..-||.+|++++.
T Consensus 96 ~~~l~eLl~AAnyL~I~~Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 96 QGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 467889999999999875 1111234445556679999999875
No 29
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=48.02 E-value=1.5e+02 Score=26.34 Aligned_cols=39 Identities=10% Similarity=0.038 Sum_probs=25.2
Q ss_pred hHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHH
Q psy10329 74 LSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIK 112 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~ 112 (606)
-..+.+.||.||..++.... -+...-+.-+..|++-.++
T Consensus 23 CrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ 64 (121)
T 3mq7_A 23 ARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDA 64 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677889999987666655 2234455666666665554
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=47.47 E-value=1.4e+02 Score=28.20 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=14.9
Q ss_pred HHHHHHHhhhHHHHHHHhh
Q psy10329 150 VLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 150 ~~~l~~enl~l~e~~~~~~ 168 (606)
.+++..||-.|+|.+-.++
T Consensus 113 ~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 113 LEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455678888999888888
No 31
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=47.05 E-value=39 Score=28.33 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=38.8
Q ss_pred HHHHHhHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhh
Q psy10329 69 EYRQVLSDTG-VQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLS 118 (606)
Q Consensus 69 e~rq~lsdl~-~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 118 (606)
.|.+.+.+-- +.|+.-|++ -+..|+.++.+..+|..++.+|+.++.+..
T Consensus 28 ~YWk~lAE~RR~AL~eaL~E-N~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 28 QYWKEVAEKRRKALYEALKE-NEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666655443 467888888 888889999999999999999999988653
No 32
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=46.80 E-value=53 Score=39.41 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=6.9
Q ss_pred HHHHHHHHHhhHHhhH
Q psy10329 100 LSEIQGLQDKNIKLSE 115 (606)
Q Consensus 100 ~~~~~~l~~~~~~~~~ 115 (606)
..|++.|+.+++.+++
T Consensus 959 ~~e~~~L~~~l~~le~ 974 (1080)
T 2dfs_A 959 STETEKLRSDVERLRM 974 (1080)
T ss_dssp HHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 33
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.79 E-value=1.1e+02 Score=25.57 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=12.3
Q ss_pred HHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 155 EENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 155 ~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
..|-+|.++++.+. ++.++|+
T Consensus 52 ~rn~eL~~e~~~l~--~~~eelq 72 (81)
T 1wt6_A 52 ARNRDLEAHVRQLQ--ERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHH
Confidence 35666666666666 5555554
No 34
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.00 E-value=15 Score=28.67 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
|+.++..|+.+|-.|..++..+. +++..|+.++
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~--~e~~~Lk~~l 59 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLR--EQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 77888889999999999999888 7777766433
No 35
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=42.37 E-value=2.2e+02 Score=26.82 Aligned_cols=66 Identities=14% Similarity=0.119 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
++...+..+++.+++...+.++..+.+ .++.+++-+-+.+.+.+...+-.+++|...+.+.+..++
T Consensus 70 ~~~~~L~~~i~~l~~~~~k~~e~~~~~---------~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~ 135 (174)
T 2p22_A 70 QTMHSLNAQIDVLTANRAKVQQFSSTS---------HVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLS 135 (174)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHTTSS---------CCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544331 111122112234566788999999999999999999988
No 36
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=42.36 E-value=38 Score=32.83 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=41.3
Q ss_pred hhcccCch-------HHHHHhHHhH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 61 CLANFDFR-------EYRQVLSDTG-VQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 61 ~l~nfdl~-------e~rq~lsdl~-~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
..-.+||. .|.+.+.+-. ..|+.-|++ -...|++++.+..+|..|+++|+.++++...
T Consensus 82 ~ieaeDL~~~e~Pse~YWk~lAE~RR~AL~eaLeE-N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 82 TQESFDLMIKENPSSQYWKEVAEKRRKALYEALKE-NEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp ---------CCSCCTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567773 4777776654 467888998 8888899999999999999999999986533
No 37
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.19 E-value=1.3e+02 Score=27.29 Aligned_cols=23 Identities=17% Similarity=0.083 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
+..|+..|..++-+|++++-+++
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888887777
No 38
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=39.36 E-value=31 Score=29.92 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHhhHHhh
Q psy10329 96 REKYLSEIQGLQDKNIKLS 114 (606)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~ 114 (606)
+++|+.|-++|+.+++.+.
T Consensus 21 i~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 39
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=37.64 E-value=61 Score=37.14 Aligned_cols=102 Identities=13% Similarity=0.192 Sum_probs=58.2
Q ss_pred hcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHH----HHHHHHHHHhhHHhhHHhhhhccCCccCCCC
Q psy10329 62 LANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKY----LSEIQGLQDKNIKLSECLSKTYSTDVSHTQD 130 (606)
Q Consensus 62 l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~----~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 130 (606)
++-..|.+.-+. +.-+.+..+-+|+.++.+.| +.+-.. .+-|+-++...+. ++.|...+.. ++.
T Consensus 312 p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~-k~~L~~~f~l----se~ 386 (716)
T 1zvu_A 312 PAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP-KPALMSRFGL----TET 386 (716)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH-HHHHHHSTTC----CTT
T ss_pred eeECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch-HHHHHHhcCC----CHH
Confidence 444555554333 33445677777877777777 543332 2344444555544 3444444555 333
Q ss_pred CCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 131 SSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
+.++.|.--+.|||. |-.+++++.+.+. +++.+|+.+|
T Consensus 387 ----------QA~aIL~mrL~rLt~le~~kl~~E~~eL~--~~i~~l~~iL 425 (716)
T 1zvu_A 387 ----------QAEAILELKLRHLAKLEEMKIRGEQSELE--KERDQLQGIL 425 (716)
T ss_dssp ----------HHHHHHTCCGGGGSHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred ----------HHHHHHhhHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHh
Confidence 677777666666665 5556666666666 6666666444
No 40
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=37.32 E-value=36 Score=27.72 Aligned_cols=29 Identities=3% Similarity=0.006 Sum_probs=26.1
Q ss_pred hhhHHHHHhhcccCCHHHHHHHHhcCCCC
Q psy10329 540 QEDVNTVCEMCNKMSTNQLESLENELNRA 568 (606)
Q Consensus 540 ~~D~~si~~~C~~Ln~~QL~kIL~~Y~p~ 568 (606)
.+.+..|.+++|.|..-+|.++|..|...
T Consensus 14 ~s~I~qV~DLfPdLG~gfi~~~L~~y~~n 42 (71)
T 2di0_A 14 DSLISQVKDLLPDLGEGFILACLEYYHYD 42 (71)
T ss_dssp HHHHHHHHHHCCSSCHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHhCCC
Confidence 46677899999999999999999999876
No 41
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=37.30 E-value=1.4e+02 Score=24.67 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
|..-|.+|-.|--+++..++.+. ++..+|.
T Consensus 44 L~~mi~~l~~E~~~l~~ni~~lk--~K~~EL~ 73 (78)
T 3iv1_A 44 LEEMVTRLDQEVAEVDKNIELLK--KKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 55556666666666666666555 5544444
No 42
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.77 E-value=69 Score=26.67 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=23.2
Q ss_pred HHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q psy10329 72 QVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 72 q~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 113 (606)
...+.-++..|++|++.+.+ ..++..++++++++.+.+
T Consensus 34 s~vr~~ni~~eskL~eae~r----n~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 34 EAIRTDNQNFASQLREAEAR----NRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 44566677778887774444 344455666666666554
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.65 E-value=1.7e+02 Score=24.35 Aligned_cols=20 Identities=10% Similarity=0.041 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhHHh
Q psy10329 94 NDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~ 113 (606)
-++++++.+-..|..+++.+
T Consensus 27 mEieELKekN~~L~~e~~e~ 46 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNA 46 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555443
No 44
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=36.64 E-value=1.8e+02 Score=23.91 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=48.4
Q ss_pred HhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHH
Q psy10329 73 VLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLK 152 (606)
Q Consensus 73 ~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 152 (606)
.+.-.+..||..+.+++.+...++..++..|..+.++..+ ++.|+.+
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~---------------------------------~r~e~~~ 51 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQN---------------------------------MKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHH
Confidence 4555666788888774444436666666666666655533 4445666
Q ss_pred HHHHhhhHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 153 LVEENLKLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 153 l~~enl~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
...|+-+|..---.++ .+|..|||.|.+
T Consensus 52 q~~EYq~LlnvK~~Ld--~EIatYRkLLEG 79 (84)
T 1gk4_A 52 HLREYQDLLNVKMALD--IEIATYRKLLEG 79 (84)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhH--HHHHHHHHHHcC
Confidence 6666666666545567 889999988843
No 45
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.61 E-value=59 Score=25.11 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
.+...|..+|+.|++|+..+.+.|
T Consensus 36 ~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 36 SLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556777888888888888777655
No 46
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.49 E-value=60 Score=26.25 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=21.8
Q ss_pred hHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHh
Q psy10329 77 TGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 77 l~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~ 113 (606)
-...||.++..++.... .+.+.|+.+|..|+.|+..+
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666555443332 66667777777777776543
No 47
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=36.23 E-value=2e+02 Score=24.39 Aligned_cols=73 Identities=5% Similarity=0.085 Sum_probs=45.7
Q ss_pred hHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHH
Q psy10329 74 LSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKL 153 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l 153 (606)
|.-.+..||.+|.+++.+...+++.++..|..+.++..+ ++.++.+-
T Consensus 17 Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~---------------------------------~r~e~~~q 63 (95)
T 3mov_A 17 GQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAE---------------------------------IRDQMQQQ 63 (95)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHH
Confidence 333456778888875444336666777777666665533 33455555
Q ss_pred HHHhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 154 VEENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 154 ~~enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
..|+-+|..---.++ .+|..||+.+.
T Consensus 64 l~EYq~LlnvKl~Le--~EIatYrkLLE 89 (95)
T 3mov_A 64 LNDYEQLLDVKLALD--MEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence 556666665445566 88888998883
No 48
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=34.92 E-value=78 Score=24.07 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 96 REKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
++.+..+++.|+.||..+.+-|..+ -+.+++|-.|-.+++|-+..+.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dN--------------------------S~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDN--------------------------SNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhh--------------------------HHHHHHHHhhhhhHHHHHHHHc
Confidence 4567778888899988887744322 1357888888888888665543
No 49
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=34.31 E-value=71 Score=34.81 Aligned_cols=106 Identities=8% Similarity=0.096 Sum_probs=64.1
Q ss_pred hhcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHH----HHHHhh--HHhhHHhhhhccCCccC
Q psy10329 61 CLANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQ----GLQDKN--IKLSECLSKTYSTDVSH 127 (606)
Q Consensus 61 ~l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~----~l~~~~--~~~~~~l~~~~~~~~~~ 127 (606)
.++-+.|.|.-+. +.-+.+..+-+|+.++.+.| +.+-.....|+ -++... +...+.|...+..
T Consensus 322 ~p~~~~l~eiL~~f~~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~l---- 397 (470)
T 3ilw_A 322 VPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIELLDI---- 397 (470)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHHHTC----
T ss_pred eeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCC----
Confidence 3555665554444 34445667777777777777 55544433233 233321 3444555555555
Q ss_pred CCCCCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 128 TQDSSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
+.. +.++.|.--+.|||. |-.+++++.+.+. +++.+|+.+|..
T Consensus 398 se~----------Qa~aIl~mrL~rLt~le~~kl~~E~~~l~--~~i~~l~~iL~~ 441 (470)
T 3ilw_A 398 DEI----------QAQAILDMQLRRLAALERQRIIDDLAKIE--AEIADLEDILAK 441 (470)
T ss_dssp CHH----------HHHHHHTCBGGGGSHHHHHHHHHHHHHHH--HHHHHHHHHHHC
T ss_pred CHH----------HHHHHHHhHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHhCC
Confidence 433 677777777778876 5556788888888 888888876644
No 50
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=33.72 E-value=2.7e+02 Score=25.21 Aligned_cols=35 Identities=23% Similarity=0.261 Sum_probs=25.5
Q ss_pred HHHHHH--HH-HHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 86 DELKTR--LM-NDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 86 ~~~~~~--~~-~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
+.+|+| .| +++..+++|.+-+|...++.++.|.++
T Consensus 49 DQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 49 DQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 334444 34 888888888888888888888877766
No 51
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=33.63 E-value=30 Score=34.69 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=27.1
Q ss_pred HhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhH
Q psy10329 79 VQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSE 115 (606)
Q Consensus 79 ~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~ 115 (606)
+.++.+++.|..+.. +++.+++.||.+|++|++++++
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345555555444433 7888999999999999999876
No 52
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=33.57 E-value=2.5e+02 Score=24.78 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
++.++.+...|+-+|..---.++ .+|..|||.|
T Consensus 96 ~r~em~~ql~EYq~Ll~vKl~Ld--~EIatYRkLL 128 (131)
T 3tnu_A 96 LRCEMEQQNQEYKILLDVKTRLE--QEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhH
Confidence 66777777778777766555677 8899999877
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.14 E-value=2.2e+02 Score=24.00 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
|...+..+..+=-+|.++++.+. ++..+++..+
T Consensus 75 L~~~~e~ie~~i~~le~~~~~l~--~~l~~lk~~l 107 (117)
T 2zqm_A 75 LKEKIETLEVRLNALERQEKKLN--EKLKELTAQI 107 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 55555555555555667777777 7777777333
No 54
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.80 E-value=1.7e+02 Score=31.72 Aligned_cols=18 Identities=17% Similarity=0.038 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhHHh
Q psy10329 96 REKYLSEIQGLQDKNIKL 113 (606)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~ 113 (606)
.....+.++.++.+.++.
T Consensus 472 ~~~~~~~l~~~~~~i~~~ 489 (597)
T 3oja_B 472 QIQQEQLLQGLHAEIDTN 489 (597)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 333334444444444433
No 55
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=31.42 E-value=2.7e+02 Score=24.47 Aligned_cols=33 Identities=12% Similarity=0.180 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
++.++.+...|+-+|..---.++ .+|..|||.|
T Consensus 94 ~r~e~~~ql~EYq~LlnvKl~Ld--~EIatYRkLL 126 (129)
T 3tnu_B 94 AKQDMARLLREYQELMNTKLALD--VEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhH
Confidence 56777777777777766555677 8888888776
No 56
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=30.43 E-value=2.3e+02 Score=23.37 Aligned_cols=69 Identities=9% Similarity=0.159 Sum_probs=42.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhh
Q psy10329 79 VQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENL 158 (606)
Q Consensus 79 ~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl 158 (606)
..+|..+.+++.+...+++.++..|..+.++..+ ++.++.+...|+-
T Consensus 13 ~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~---------------------------------~r~e~~~ql~EYq 59 (86)
T 1x8y_A 13 AAKEAKLRDLEDSLARERDTSRRLLAEKEREMAE---------------------------------MRARMQQQLDEYQ 59 (86)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHHHHHHH
Confidence 3567777764443335666666666666544433 4455666666766
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 159 KLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 159 ~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
+|..---.++ .+|..|||.|..
T Consensus 60 ~LlnvK~~Le--~EIatYRkLLEG 81 (86)
T 1x8y_A 60 ELLDIKLALD--MEIHAYRKLLEG 81 (86)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHhhH--HHHHHHHHHHcC
Confidence 6666555667 888889988843
No 57
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=30.05 E-value=1.9e+02 Score=22.69 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=32.2
Q ss_pred chHHHHHhHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhh
Q psy10329 67 FREYRQVLSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLS 114 (606)
Q Consensus 67 l~e~rq~lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~ 114 (606)
+.||.++=+.++ .-|+.+|.|.+-.. +|+..++.+|+.|+.||..+.
T Consensus 12 ~qeylevK~ALa-aSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 12 LQEYLELKKALA-TSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 456666544443 34666666555444 888899999999999997654
No 58
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.02 E-value=1.9e+02 Score=24.75 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHHH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALE 165 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~~ 165 (606)
+++++.+..|..++...++++++=.+.|.. + ..+..++.++..++.+-..+-..+.
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~-----------~-----~~~~~~~~~l~~l~~~i~~~a~~ik 67 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRKHSAILAS-----------P-----NPDEKTKEELEELMSDIKKTANKVR 67 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------S-----SCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------C-----CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777776666655444443 2 2344588888888887776555444
No 59
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=29.39 E-value=41 Score=30.18 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=47.5
Q ss_pred cCCCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhC-CCCcchHHhhchhHHHHHhhhhc
Q psy10329 458 HGIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDN-KMADGEINEQLSPLIQASQLLQA 536 (606)
Q Consensus 458 ~~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~-gL~~~~a~~~L~pL~QAaqLLQ~ 536 (606)
.+|++.+...++.+.-|.-+.-.- ...+-+. +-.-..+.+|=.+- .+ -...|-.|+.||+.|++
T Consensus 42 ~~V~~~iL~kVieyc~~h~~~~~~----~~~~~~~-------~~~~~~i~~wD~~F~~v----d~~~l~eLi~AAnyL~I 106 (141)
T 1fs1_B 42 PNVNAAILKKVIQWCTHHKDDPPP----PEDDENK-------EKRTDDIPVWDQEFLKV----DQGTLFELILAANYLDI 106 (141)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCC----------------------------HHHHHHTCS----CHHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHhccCCCc----ccccccc-------ccchhhhhHHHHHHHhC----CHHHHHHHHHHHHHHhh
Confidence 367777777777777766532100 0000000 11123466775541 23 24577889999999998
Q ss_pred cC-chhhHHHHHhhcccCCHHHHHHHHh
Q psy10329 537 RK-TQEDVNTVCEMCNKMSTNQLESLEN 563 (606)
Q Consensus 537 ~K-T~~D~~si~~~C~~Ln~~QL~kIL~ 563 (606)
+. -.---..+.++-..=||.||+++++
T Consensus 107 ~~Lldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 107 KGLLDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 75 1111234445555668888888763
No 60
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=29.24 E-value=56 Score=31.37 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhhHHHHHHH
Q psy10329 149 EVLKLVEENLKLKQALEVASASKDENEITR 178 (606)
Q Consensus 149 e~~~l~~enl~l~e~~~~~~~~~~~~~l~~ 178 (606)
.|+.|+.||-.|.++++.++ .++..|++
T Consensus 21 LV~~L~~En~~L~~ql~~k~--~ei~~L~~ 48 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKA--TEIKQLQK 48 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 57888889999999999888 88888883
No 61
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=29.19 E-value=3.6e+02 Score=25.27 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=36.4
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHH
Q psy10329 76 DTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVE 155 (606)
Q Consensus 76 dl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~ 155 (606)
+|.-.-..+++++..+.+.+...+++++...+.|...+ +.. . +|+ ...|..|+.
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL---~~a---~----~~D----------------eakI~aL~~ 120 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNAL---LTA---S----SPD----------------TAKINAVAK 120 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTS---S----SCC----------------HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC---C----CCC----------------HHHHHHHHH
Confidence 33344445666633333366667777766666555433 311 1 222 135777777
Q ss_pred HhhhHHHHHHHhh
Q psy10329 156 ENLKLKQALEVAS 168 (606)
Q Consensus 156 enl~l~e~~~~~~ 168 (606)
|--+|+.++....
T Consensus 121 Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 121 EMESLGQKLDEQR 133 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888887766544
No 62
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=29.14 E-value=2.9e+02 Score=24.11 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=60.1
Q ss_pred HHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHH
Q psy10329 69 EYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKI 148 (606)
Q Consensus 69 e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (606)
-|...+.++-++|+.--.+ +.+..-++..++..+++++...+.... . .. +.+ + .=..++.
T Consensus 17 ~ye~~I~~LR~qid~~~~e-~a~l~leldn~~~~~edfk~KyE~E~~---~--r~----~~E----~------di~~lrK 76 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTND-KARVEVERDNLAEDIMRLREKLQEEML---Q--RE----EAE----N------TLQSFRQ 76 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---H--HH----HHH----H------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHH---H--HH----HHH----H------HHHHhhh
Confidence 3455577777777665555 555557777777888887776654221 1 11 001 1 1124778
Q ss_pred HHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 149 EVLKLVEENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 149 e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
.+-..+---+||+-+++.+. +++.=||+.+.
T Consensus 77 ~lD~~~l~r~dLE~~iesL~--eEl~FLKk~he 107 (119)
T 3ol1_A 77 DVDNASLARLDLERKVESLQ--EEIAFLKKLHE 107 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 88888888899999999999 99888886663
No 63
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.07 E-value=2.1e+02 Score=31.51 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=27.9
Q ss_pred Cch-HHHHHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy10329 66 DFR-EYRQVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNI 111 (606)
Q Consensus 66 dl~-e~rq~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (606)
.++ |.|+.+..|-+-+..+++. .+.++.-+++++.+|++|.-+.+
T Consensus 110 E~S~ELRRrIqyLKekVdnQlsn-IrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKVQH-IQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5666666666666666644 45555677777777777754443
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.64 E-value=1e+02 Score=24.01 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
.+...|+.+|+.|+++...+..+|
T Consensus 37 ~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 37 DEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666554
No 65
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=27.35 E-value=4.7e+02 Score=25.94 Aligned_cols=101 Identities=10% Similarity=0.132 Sum_probs=75.9
Q ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHhhcCcccccchhhHHHhchhHHHHHHHhCCCCcchHHhhchhHHHHHhhhhccC
Q psy10329 459 GIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARK 538 (606)
Q Consensus 459 ~V~p~Li~QlFsQLF~fIna~lFN~LLlrk~~cswskG~QIR~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqLLQ~~K 538 (606)
.+++.....+++.+..++...+=..++. +-++.--|+|+--=++.|-.++-+.+- ..+.+.|.++.|++-+|.+.+
T Consensus 144 ~Lt~~~y~~Ll~~~~~~la~~lE~~i~~--~~fn~lGal~LdrDvr~li~~~~~~~~--~~lRekF~RL~QI~~lLnle~ 219 (263)
T 3hr0_A 144 SLSPVIYDSLTGLMTSLVAVELEKVVLK--STFNRLGGLQFDKELRSLIAYLTTVTT--WTIRDKFARLSQMATILNLER 219 (263)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHTTSC--TTHHHHTHHHHHHHHHHTCSS
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHHh--CCcCchhHHHHHHHHHHHHHHHHhccc--hhhhHHHHHHHHHHHHHcCCC
Confidence 3457777777777777777766666664 348888899999999999999977443 568999999999999999986
Q ss_pred chhhHHHH-----HhhcccCCHHHHHHHHhc
Q psy10329 539 TQEDVNTV-----CEMCNKMSTNQLESLENE 564 (606)
Q Consensus 539 T~~D~~si-----~~~C~~Ln~~QL~kIL~~ 564 (606)
.+|+... -.+-..|||..+.+++..
T Consensus 220 -~eev~d~~~~~~~~~~W~Ls~~E~r~il~l 249 (263)
T 3hr0_A 220 -VTEILDYWGPNSGPLTWRLTPAEVRQVLAL 249 (263)
T ss_dssp -GGGGGGTSGGGGTTCCCCSCHHHHHHHHTT
T ss_pred -hHHHHHHhcccCCCccccCCHHHHHHHHHh
Confidence 2222111 124568999999999864
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=26.90 E-value=1.1e+02 Score=32.39 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSEC 116 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~ 116 (606)
.+.+..+.+++.+++|++++++.
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~ 457 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKL 457 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhh
Confidence 44455555555555555555553
No 67
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=26.38 E-value=1.2e+02 Score=23.42 Aligned_cols=42 Identities=19% Similarity=0.220 Sum_probs=23.1
Q ss_pred HHhHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 72 QVLSDTGVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 72 q~lsdl~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
+-=.+-...||.++..|. .+...|..+|..|++++..+.+.|
T Consensus 18 ~rKk~~~~~Le~~v~~L~----~~n~~L~~~v~~L~~e~~~Lk~~l 59 (62)
T 1jnm_A 18 KRKLERIARLEEKVKTLK----AQNSELASTANMLREQVAQLKQKV 59 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555444422 456677777888888877776654
No 68
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=26.02 E-value=96 Score=25.27 Aligned_cols=39 Identities=28% Similarity=0.326 Sum_probs=17.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 78 GVQLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 78 ~~~le~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
+--||.+++.++.+ ++.-+.+-++++.|...+.+.|...
T Consensus 16 N~~Le~~v~~le~~----Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 16 NKDLEGQLSEMEQR----LEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34444444443333 3333444444444444444444333
No 69
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=25.94 E-value=1.5e+02 Score=24.95 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
.+-..|+.+|+.|+.|...+..+|.+
T Consensus 50 ~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 50 AENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999998865
No 70
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.89 E-value=3.9e+02 Score=24.19 Aligned_cols=23 Identities=30% Similarity=0.170 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Q psy10329 146 LKIEVLKLVEENLKLKQALEVAS 168 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~ 168 (606)
-|.||.+|-+||--+|-.+++.+
T Consensus 58 HQKEi~~Lrae~~~~QRn~~K~~ 80 (167)
T 4gkw_A 58 HQKEIGKLRAELGTAQRNLEKAD 80 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH
Confidence 46788888888888877777665
No 71
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.42 E-value=1.7e+02 Score=23.81 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
.++.+...+|..|+.+.++.+.++
T Consensus 47 k~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 47 LELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhccC
Confidence 555666667777777777766543
No 72
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=24.35 E-value=1.8e+02 Score=23.46 Aligned_cols=15 Identities=27% Similarity=0.242 Sum_probs=7.7
Q ss_pred HHHhhhHHHHHHHhh
Q psy10329 154 VEENLKLKQALEVAS 168 (606)
Q Consensus 154 ~~enl~l~e~~~~~~ 168 (606)
..||-.|+++++.+.
T Consensus 49 ~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 49 TLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555555
No 73
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=24.14 E-value=2.7e+02 Score=25.77 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHH
Q psy10329 146 LKIEVLKLVEENLKLKQALEVASASKDENEIT 177 (606)
Q Consensus 146 ~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~ 177 (606)
++.|+.-|..++--+++++.++. ++.++|-
T Consensus 101 l~DEl~aLqlq~n~lE~kl~kLq--~EN~~LV 130 (152)
T 3a7p_A 101 LNAALISGTIENNVLQQKLSDLK--KEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 56666666666666666666666 6665555
No 74
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=24.12 E-value=76 Score=36.23 Aligned_cols=106 Identities=11% Similarity=0.147 Sum_probs=58.0
Q ss_pred hhcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHHHHHHHH----HHhh--HHhhHHhhhhccCCccC
Q psy10329 61 CLANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYLSEIQGL----QDKN--IKLSECLSKTYSTDVSH 127 (606)
Q Consensus 61 ~l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~~~~~~l----~~~~--~~~~~~l~~~~~~~~~~ 127 (606)
.++-..|.|.-+. +.-+.+..+-+|+.++.+.| +.+......|++. +... +..++-|...+..
T Consensus 543 ~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~f~l---- 618 (692)
T 2xcs_B 543 RPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDKVAMESLQQRFKL---- 618 (692)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHTC----
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCCHHHHHHHHhhccCC----
Confidence 3566666665444 33344666777777677776 4443333322222 2111 1223333333333
Q ss_pred CCCCCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 128 TQDSSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
+.. +.++.|.--+.|||. |-.+|+++.+.+. +++.+|+++|..
T Consensus 619 se~----------Qa~aIL~m~L~rLt~le~~kl~~E~~~l~--~~i~~l~~iL~~ 662 (692)
T 2xcs_B 619 SEK----------QAQAILDMRLRRLTGLERDKIEAEYNELL--NYISELETILAD 662 (692)
T ss_dssp CHH----------HHHHHHTCBGGGGSTTHHHHHHHHHHHHH--HHHHHHHHHHHC
T ss_pred CHH----------HHHHHHHhHHHHhhhHHHHHHHHHHHHHH--HHHHHHHHHhCC
Confidence 222 566666666777776 4556777788888 888888866644
No 75
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=24.00 E-value=4.4e+02 Score=25.65 Aligned_cols=20 Identities=20% Similarity=0.117 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHhhhHHHHH
Q psy10329 145 YLKIEVLKLVEENLKLKQAL 164 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~ 164 (606)
.|++||.-+..+.-++.+.+
T Consensus 94 aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36677766655554444433
No 76
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=23.63 E-value=1.2e+02 Score=33.37 Aligned_cols=106 Identities=12% Similarity=0.169 Sum_probs=57.4
Q ss_pred hhcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHHH----HHHHHHHHhh--HHhhHHhhhhccCCccC
Q psy10329 61 CLANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKYL----SEIQGLQDKN--IKLSECLSKTYSTDVSH 127 (606)
Q Consensus 61 ~l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~~----~~~~~l~~~~--~~~~~~l~~~~~~~~~~ 127 (606)
.++-+.|.+.-+. +.-+.+..+-+|+.++.+.| +.+.... ..|+-++... ....+-|.+.+..
T Consensus 360 ~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~~~a~~~L~~~f~l---- 435 (514)
T 2inr_A 360 RPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSSKNKRDAKENLIEVYEF---- 435 (514)
T ss_dssp EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCCSHHHHHHHHHTTSSC----
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCC----
Confidence 3566666665444 33344666777777677766 4333322 2222223222 1222334443333
Q ss_pred CCCCCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 128 TQDSSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
++. +.++.|.--+.+||. |-.+|+++.+.+. +++.+|+++|..
T Consensus 436 se~----------qa~~IL~m~L~rLT~~e~~kl~~E~~~l~--~ei~~l~~iL~~ 479 (514)
T 2inr_A 436 TEE----------QAEAIVMLQLYRLTNTDIVALEGEHKELE--ALIKQLRHILDN 479 (514)
T ss_dssp CHH----------HHHHHHTCCGGGGSTTHHHHHHHHHHHHH--HHHHHHHHHHHC
T ss_pred CHH----------HHHHHHhchHHHHhhHHHHHHHHHHHHHH--HHHHHHHHHhCC
Confidence 222 566666666777776 4455777777777 777777766643
No 77
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.04 E-value=2.6e+02 Score=24.30 Aligned_cols=47 Identities=21% Similarity=0.210 Sum_probs=37.1
Q ss_pred hHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhh
Q psy10329 74 LSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKT 120 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~ 120 (606)
|+|.---+|+.+-.++++.. .+++.++..+..|+.+...++..|.+.
T Consensus 35 LKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qR 84 (103)
T 4h22_A 35 LKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQR 84 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78877778888777666655 778888888999998888888777654
No 78
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.01 E-value=64 Score=27.07 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=37.3
Q ss_pred hchhHHHHHHHhCCCCcchHHhhchhHHHHHhhhhccCchhhHHHHHhhcccCCHHHHHHHHhc
Q psy10329 501 YNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARKTQEDVNTVCEMCNKMSTNQLESLENE 564 (606)
Q Consensus 501 ~NLS~LEeW~r~~gL~~~~a~~~L~pL~QAaqLLQ~~KT~~D~~si~~~C~~Ln~~QL~kIL~~ 564 (606)
+++..+-.|++-.||.+..+..+-+.=+-=.-|+++.+ +.+.+. ..||+.|..||++-
T Consensus 18 lSv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~e-----e~L~ed-f~ls~Lq~kKi~~f 75 (84)
T 2dkz_A 18 LSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTE-----EILSED-FKLSKLQVKKIMQF 75 (84)
T ss_dssp CCHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCH-----HHHHHT-SCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCH-----HHHHhh-cCCCHHHHHHHHHH
Confidence 56889999999999944334444444344444555543 233343 67799999999853
No 79
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=22.49 E-value=4e+02 Score=24.61 Aligned_cols=65 Identities=15% Similarity=0.085 Sum_probs=39.9
Q ss_pred hHHhHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHH
Q psy10329 74 LSDTGVQLESEVDELKTRLM---NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEV 150 (606)
Q Consensus 74 lsdl~~~le~~l~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 150 (606)
+.+....|+.++..++.+.. +++..-...++.+++|...++- .. ..+...+
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLql------q~--------------------n~lE~kl 119 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTI------EN--------------------NVLQQKL 119 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH--------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH--------------------HHHHHHH
Confidence 34566667777777666555 4555555566666666665543 11 1266678
Q ss_pred HHHHHHhhhHHHHH
Q psy10329 151 LKLVEENLKLKQAL 164 (606)
Q Consensus 151 ~~l~~enl~l~e~~ 164 (606)
.+|..||-+|-+..
T Consensus 120 ~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 120 SDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776643
No 80
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=22.22 E-value=1.5e+02 Score=22.51 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHhhhhhHHHHHHHHH
Q psy10329 145 YLKIEVLKLVEENLKLKQALEVASASKDENEITRMI 180 (606)
Q Consensus 145 ~~~~e~~~l~~enl~l~e~~~~~~~~~~~~~l~~~~ 180 (606)
-++.++..|+..|-.|-+.+.... .++.+|+..+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR--~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEAR--QQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 488899999999999999998888 8888888554
No 81
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=21.97 E-value=1.6e+02 Score=24.19 Aligned_cols=26 Identities=12% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
.+-..|+.+|+.|+.|...+.++|.+
T Consensus 50 ~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 50 AENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888999999999888887644
No 82
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.65 E-value=84 Score=24.43 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=27.2
Q ss_pred chhhHHHHHhhcccCCHHHHHHHHhcCCCC
Q psy10329 539 TQEDVNTVCEMCNKMSTNQLESLENELNRA 568 (606)
Q Consensus 539 T~~D~~si~~~C~~Ln~~QL~kIL~~Y~p~ 568 (606)
+.++++.+.+++|.++..+|.++|..+.-+
T Consensus 9 ~ee~l~~L~emFP~ld~~~I~~vL~a~~gd 38 (59)
T 1wgl_A 9 SEEDLKAIQDMFPNMDQEVIRSVLEAQRGN 38 (59)
T ss_dssp CHHHHHHHHHHCSSSCHHHHHHHHTTTTTC
T ss_pred CHHHHHHHHHHCCCCCHHHHHHHHHHcCCC
Confidence 678899999999999999999999988764
No 83
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=21.30 E-value=4.6e+02 Score=28.50 Aligned_cols=20 Identities=0% Similarity=-0.011 Sum_probs=14.5
Q ss_pred HHHHHHHHhcCCCC---CCCchH
Q psy10329 555 TNQLESLENELNRA---RTENAD 574 (606)
Q Consensus 555 ~~QL~kIL~~Y~p~---rV~~~f 574 (606)
+.=|..||..|+-+ +||+.+
T Consensus 409 ~R~l~AiLEn~q~~dGi~iP~~L 431 (485)
T 3qne_A 409 ERTICCILENYQKEDGLVIPEVL 431 (485)
T ss_dssp HHHHHHHHHHSEETTEEECCHHH
T ss_pred HHHHHHHHHhcCCCCceecChhh
Confidence 45688899999865 677654
No 84
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=20.33 E-value=2.4e+02 Score=32.59 Aligned_cols=104 Identities=11% Similarity=0.142 Sum_probs=62.4
Q ss_pred hcccCchHHHHH-----hHHhHHhhHHHHHHHHHHHH--HHHHHH----HHHHHHHHHhhHHhhHHhhhhccCCccCCCC
Q psy10329 62 LANFDFREYRQV-----LSDTGVQLESEVDELKTRLM--NDREKY----LSEIQGLQDKNIKLSECLSKTYSTDVSHTQD 130 (606)
Q Consensus 62 l~nfdl~e~rq~-----lsdl~~~le~~l~~~~~~~~--~~~~~~----~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 130 (606)
++-..|.+.-+. +.-+.+..+-+|+.++.+.| +.+-.. ..-|+-++...+. ++.|...+.. +..
T Consensus 606 p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iD~vI~iIr~s~~~-k~~L~~~f~l----se~ 680 (767)
T 2xkj_E 606 PQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREEDQP-KPVLMEHFNI----DEI 680 (767)
T ss_dssp EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCSSH-HHHHHHHHTC----CHH
T ss_pred eEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccch-HHHHHHhcCC----CHH
Confidence 344555554333 33344666677777666666 443222 2223333333333 3334444444 333
Q ss_pred CCccCccccCCcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHHhc
Q psy10329 131 SSSTTSLESITPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMIVE 182 (606)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~~~ 182 (606)
+.++.|.--+.|||. |-.+++++.+.+. +++.+|+.+|..
T Consensus 681 ----------qa~aIl~mrL~rLt~le~~kl~~E~~~l~--~~i~~l~~iL~~ 721 (767)
T 2xkj_E 681 ----------QAEAILELKLRHLAKLEEMEIRHEQDELS--AKAAIIREQLEN 721 (767)
T ss_dssp ----------HHHHHHHSCHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHC
T ss_pred ----------HHHHHHHhHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHhcC
Confidence 788888888999988 6778888999998 899888876643
Done!