Query psy10329
Match_columns 606
No_of_seqs 246 out of 538
Neff 5.7
Searched_HMMs 13730
Date Fri Aug 16 15:13:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10329.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10329hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ez3a_ a.47.2.1 (A:) Syntaxin 29.6 92 0.0067 24.8 8.2 53 94-162 10-62 (124)
2 d1seta1 a.2.7.1 (A:1-110) Sery 29.5 71 0.0052 25.2 7.3 24 94-117 35-58 (110)
3 d1wlza1 a.39.1.7 (A:229-311) D 22.7 75 0.0055 23.2 5.8 46 523-568 18-68 (83)
4 d1ab4a_ e.11.1.1 (A:) DNA Gyra 15.1 1.2E+02 0.0088 30.3 7.0 37 143-181 427-464 (493)
5 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 14.8 2.4E+02 0.017 23.0 8.1 57 94-164 9-65 (196)
6 d2oa5a1 d.362.1.1 (A:7-102) Un 14.3 1.3E+02 0.0097 23.7 5.5 24 96-119 4-27 (96)
7 d256ba_ a.24.3.1 (A:) Cytochro 12.1 1.1E+02 0.0081 24.2 4.5 47 63-110 54-101 (106)
8 d1x75a1 e.11.1.1 (A:363-494) D 11.4 1.1E+02 0.008 25.3 4.4 39 141-181 92-131 (132)
9 d1fxka_ a.2.5.1 (A:) Prefoldin 10.8 1.9E+02 0.014 22.4 5.6 24 65-88 61-84 (107)
10 d1ivsa1 a.2.7.3 (A:797-862) Va 9.7 2.9E+02 0.021 19.4 6.4 24 95-118 5-28 (66)
No 1
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=29.60 E-value=92 Score=24.84 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQ 162 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e 162 (606)
++++..+.+|+.++...++++.+=++.|.. + ..+..++.++..++.+....-.
T Consensus 10 ~eV~~Ir~~I~~i~~~v~~i~~~~~~~l~~-----------~-----~~~~~~~~~l~~~~~~i~~~a~ 62 (124)
T d1ez3a_ 10 EQVEEIRGFIDKIAENVEEVKRKHSAILAS-----------P-----NPDEKTKEELEELMSDIKKTAN 62 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------S-----SCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------C-----CcchhHHHHHHHHHHHHHHHHH
Confidence 667777888888888887777766555544 2 3455578888877776665433
No 2
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=29.47 E-value=71 Score=25.20 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHh
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECL 117 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l 117 (606)
+++.++..+++.|+.+...+.+-+
T Consensus 35 ~~rr~l~~~~e~l~~~rN~~sk~i 58 (110)
T d1seta1 35 REVQELKKRLQEVQTERNQVAKRV 58 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777776665533
No 3
>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.67 E-value=75 Score=23.20 Aligned_cols=46 Identities=15% Similarity=0.256 Sum_probs=35.1
Q ss_pred hchhHHHHHhhhhccC----chhhHHHH-HhhcccCCHHHHHHHHhcCCCC
Q psy10329 523 QLSPLIQASQLLQARK----TQEDVNTV-CEMCNKMSTNQLESLENELNRA 568 (606)
Q Consensus 523 ~L~pL~QAaqLLQ~~K----T~~D~~si-~~~C~~Ln~~QL~kIL~~Y~p~ 568 (606)
+...+.+|-+.+-..+ +..++..+ ...|..|++.|+.+++..|.++
T Consensus 18 ~~~~l~~~F~~~D~~~~G~i~~~ef~~~l~~~~~~l~~~e~~~l~~~~d~~ 68 (83)
T d1wlza1 18 HYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVN 68 (83)
T ss_dssp THHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBC
T ss_pred HHHHHHHHHHHHCCCCCceEChhHHHHHHHHhCCCCChhHHHHHhhccccC
Confidence 4456777777776655 56777655 4679999999999999999876
No 4
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=15.13 E-value=1.2e+02 Score=30.31 Aligned_cols=37 Identities=22% Similarity=0.253 Sum_probs=27.3
Q ss_pred chhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 143 DHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 143 ~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
++.|.--+.+||. |-.+|+++++.+. +++++|+++|.
T Consensus 427 ~~IL~MrL~~LT~le~~kL~~E~~~l~--~ei~eL~~iL~ 464 (493)
T d1ab4a_ 427 QAILDLRLQKLTGLEHEKLLDEYKELL--DQIAELLRILG 464 (493)
T ss_dssp HHHHTCCGGGGSHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhC
Confidence 4455556778886 5566888888888 88888887774
No 5
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.76 E-value=2.4e+02 Score=22.99 Aligned_cols=57 Identities=9% Similarity=0.106 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhHHhhHHhhhhccCCccCCCCCCccCccccCCcchhHHHHHHHHHHHhhhHHHHH
Q psy10329 94 NDREKYLSEIQGLQDKNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQAL 164 (606)
Q Consensus 94 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~enl~l~e~~ 164 (606)
.+.++.+.+|..+.....+++++-.+.+.. +. + ....-+++++..++.+...+-.++
T Consensus 9 ~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~-----~~----~-----~~~~~~~~~i~~~~~~~~~~~~~~ 65 (196)
T d1fioa_ 9 NKISQINRDLDKYDHTINQVDSLHKRLLTE-----VN----E-----EQASHLRHSLDNFVAQATDLQFKL 65 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CC----H-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CC----h-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777777777777654433222 11 1 223346777777766655554443
No 6
>d2oa5a1 d.362.1.1 (A:7-102) Uncharacterized protein BQLF2 {Murid herpesvirus 4 [TaxId: 33708]}
Probab=14.30 E-value=1.3e+02 Score=23.73 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhHHhhHHhhh
Q psy10329 96 REKYLSEIQGLQDKNIKLSECLSK 119 (606)
Q Consensus 96 ~~~~~~~~~~l~~~~~~~~~~l~~ 119 (606)
.|+|-.++++|+-||..+++-+.+
T Consensus 4 ~EeLaaeL~rL~~ENk~LKkkl~~ 27 (96)
T d2oa5a1 4 YEEMVKEVERLKLENKTLKQKVKS 27 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888999999999999886654
No 7
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=12.05 E-value=1.1e+02 Score=24.21 Aligned_cols=47 Identities=4% Similarity=0.104 Sum_probs=28.7
Q ss_pred cccCchHHHHHhHHhHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q psy10329 63 ANFDFREYRQVLSDTGVQLESEVDELKTRLM-NDREKYLSEIQGLQDKN 110 (606)
Q Consensus 63 ~nfdl~e~rq~lsdl~~~le~~l~~~~~~~~-~~~~~~~~~~~~l~~~~ 110 (606)
-..|...|++|+.+|...|..=.+. -..-. .+...+..+|+.+++++
T Consensus 54 ~~~~~~~~~~g~d~L~~~ld~i~~l-a~~G~l~eAk~~l~~l~~~r~~Y 101 (106)
T d256ba_ 54 DSPEMKDFRHGFDILVGQIDDALKL-ANEGKVKEAQAAAEQLKTTRNAY 101 (106)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHTHHHHHHHHH
T ss_pred ccchHhHHHHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHH
Confidence 3445778999998876666433222 22222 66666667777777665
No 8
>d1x75a1 e.11.1.1 (A:363-494) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=11.42 E-value=1.1e+02 Score=25.29 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=31.1
Q ss_pred CcchhHHHHHHHHHH-HhhhHHHHHHHhhhhhHHHHHHHHHh
Q psy10329 141 TPDHYLKIEVLKLVE-ENLKLKQALEVASASKDENEITRMIV 181 (606)
Q Consensus 141 ~~~~~~~~e~~~l~~-enl~l~e~~~~~~~~~~~~~l~~~~~ 181 (606)
++++.|.--+.|||. |--++.+.++.+. +.+++|.++|.
T Consensus 92 QA~AIL~mrL~rLT~LE~~kl~~E~~eL~--~~I~~l~~IL~ 131 (132)
T d1x75a1 92 QAQAILDLRLQKLTGLEHEKLLDEYKELL--DQIAELLRILG 131 (132)
T ss_dssp HHHHHHTCBGGGGSHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 567777766778877 7788888888888 89998888774
No 9
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=10.80 E-value=1.9e+02 Score=22.39 Aligned_cols=24 Identities=13% Similarity=0.077 Sum_probs=15.9
Q ss_pred cCchHHHHHhHHhHHhhHHHHHHH
Q psy10329 65 FDFREYRQVLSDTGVQLESEVDEL 88 (606)
Q Consensus 65 fdl~e~rq~lsdl~~~le~~l~~~ 88 (606)
=|..+....++.-.-.|+.+++.+
T Consensus 61 ~~~~e~~~~l~~~~e~l~~~i~~l 84 (107)
T d1fxka_ 61 VAKDELTEELQEKLETLQLREKTI 84 (107)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777776666666666653
No 10
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.66 E-value=2.9e+02 Score=19.39 Aligned_cols=24 Identities=13% Similarity=0.039 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhHHhhHHhh
Q psy10329 95 DREKYLSEIQGLQDKNIKLSECLS 118 (606)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~~~~~l~ 118 (606)
|+..+..+++.++.+.+.+++-|+
T Consensus 5 E~~RL~K~l~kl~~~i~~~~~kL~ 28 (66)
T d1ivsa1 5 WRRRQEKRLKELLALAERSQRKLA 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 455566666666666666666554
Done!