RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10329
(606 letters)
>2f6h_X Myosin-2, type V myosin; mysoin V, cargo binding, cargo transport,
vacuole binding, secreatory vescIle binding, structural
protein; 2.25A {Saccharomyces cerevisiae}
Length = 419
Score = 200 bits (510), Expect = 2e-58
Identities = 65/326 (19%), Positives = 139/326 (42%), Gaps = 32/326 (9%)
Query: 264 IRKKERTYLGMFEFEKSDINIIMKRLITGL------------------PAYIFFMCVRHT 305
+ + E + I + L+ G PA I + +
Sbjct: 2 ATQINEELYRLLEDTEILNQEITEGLLKGFEVPDAGVAIQLSKRDVVYPARILIIVLSEM 61
Query: 306 DYINDEEKVRCLLSAIILNVKRVVKKRYED--LDSTILWLTNLLRLLNLL----KQYSGE 359
++ L+ ++ +++VV + + + S + WL N+ L + + E
Sbjct: 62 WRFGLTKQSESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTE 121
Query: 360 KAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVWIYQAVVRFMEEKINSIVIPAILEFES 419
+ F+ T+ + + ++ E + IY ++ +++++ I A++ ES
Sbjct: 122 ETFKNGMTDEEYKEYVSLVT--ELKDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISES 179
Query: 420 IPVMSSGKPSRLGR---SESVGSSPGDLQALLMSFYKLLVLHGIDMEIINQVFKQLYYYI 476
+P S+G+ S + + + D+ S Y + I+ E+ + V L Y+
Sbjct: 180 LPGFSAGETSGFLNKIFANTEEYTMDDILTFFNSIYWCMKSFHIENEVFHAVVTTLLNYV 239
Query: 477 GASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQA 536
A N L++++ W RG+Q+ YN++ LE++ + + + + E L LIQ ++LLQ
Sbjct: 240 DAICFNELIMKRNFLSWKRGLQLNYNVTRLEEWCKTHGL--TDGTECLQHLIQTAKLLQV 297
Query: 537 RK-TQEDVNTVCEMCNKMSTNQLESL 561
RK T ED++ + +C ++ QL+ L
Sbjct: 298 RKYTIEDIDILRGICYSLTPAQLQKL 323
Score = 44.9 bits (105), Expect = 5e-05
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 9/147 (6%)
Query: 1 VRCLLSAIILNVKRVVKKRYED--LDSTILWLTNLLRLLNLL----KQYSGEKAFQTDNT 54
L+ ++ +++VV + + + S + WL N+ L + + E+ F+ T
Sbjct: 70 SESFLAQVLTTIQKVVTQLKGNDLIPSGVFWLANVRELYSFVVFALNSILTEETFKNGMT 129
Query: 55 EVQNAQCLANFDFREYRQVLSDTGVQLESE-VDELKTRLMNDREKYLSEIQGLQDKNIKL 113
+ + + ++ E + + + + +L+ +L + + L +
Sbjct: 130 DEEYKEYVSLVT--ELKDDFEALSYNIYNIWLKKLQKQLQKKAINAVVISESLPGFSAGE 187
Query: 114 SECLSKTYSTDVSHTQDSSSTTSLESI 140
+ + T SI
Sbjct: 188 TSGFLNKIFANTEEYTMDDILTFFNSI 214
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A
{Saccharomyces cerevisiae}
Length = 386
Score = 194 bits (495), Expect = 1e-56
Identities = 45/318 (14%), Positives = 100/318 (31%), Gaps = 37/318 (11%)
Query: 262 NVIRKK--ERTYLGMFEFEKSDINIIMKRLITGL------------PAYIFFMCVRHTDY 307
NVIR++ L + + + + + P ++ V
Sbjct: 8 NVIRRESGNPDLLELLMDLNCYTLEVTEGYLKKVNVTEVNGDNVLGPIHVITTVVSSLVR 67
Query: 308 INDEEKVRCLLSAIILNVKRVVKKRYED--LDSTILWLTNLLRLLNLLKQYSGEKAFQTD 365
+ +S ++L V+ +V +D + I WL+NL RL
Sbjct: 68 NGLLIQSSKFISKVLLTVESIVMSLPKDETMLGGIFWLSNLSRLPAFAANQKTLYE---- 123
Query: 366 NTEVQNAQCLANFDFREYRQVLSDTGVWIYQAVVRFMEEKINS-IVIPAILEFESIPVMS 424
L + IY + + ++ I I ++ E +
Sbjct: 124 ANGGDEKDKLTLIYLNDLENETLKVFDKIYSTWLVKFMKHASAHIEIFDMVLNEKLF--- 180
Query: 425 SGKPSRLGRSESVGSSPGDLQALLMSFYKLLVLHGIDMEIINQVFKQLYYYIGASSLNNL 484
S L L F +L + + ++F Y+ N+L
Sbjct: 181 ---------KNSGDEKFAKLFTFLNEFDAVLCKFQVVDSMHTKIFNDTLKYLNVMLFNDL 231
Query: 485 LLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARK-TQEDV 543
+ + +W G ++ N+ L + ++ L +IQA ++LQ + +
Sbjct: 232 ITKCPALNWKYGYEVDRNIERLVSWFEP---RIEDVRPNLIQIIQAVKILQLKISNLNEF 288
Query: 544 NTVCEMCNKMSTNQLESL 561
+ + ++ Q++++
Sbjct: 289 KLLFDFWYALNPAQIQAI 306
Score = 47.4 bits (112), Expect = 8e-06
Identities = 13/83 (15%), Positives = 24/83 (28%), Gaps = 6/83 (7%)
Query: 1 VRCLLSAIILNVKRVVKKRYED--LDSTILWLTNLLRLLNLLKQYSGEKAFQTDNTEVQN 58
+S ++L V+ +V +D + I WL+NL RL
Sbjct: 74 SSKFISKVLLTVESIVMSLPKDETMLGGIFWLSNLSRLPAFAANQKTLYE----ANGGDE 129
Query: 59 AQCLANFDFREYRQVLSDTGVQL 81
L + ++
Sbjct: 130 KDKLTLIYLNDLENETLKVFDKI 152
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.3 bits (179), Expect = 1e-13
Identities = 79/506 (15%), Positives = 157/506 (31%), Gaps = 153/506 (30%)
Query: 13 KRVVKKRYEDLDSTILWLTN----LLRLLNLL--KQYSGEKAF-----QTD--------N 53
K ++ K E++D I+ + LRL L KQ + F + +
Sbjct: 43 KSILSK--EEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 54 TEVQNAQCLANFDFREYR-------QVLSDTGVQLESEVDELKTRLMNDR-EKYLSEIQG 105
TE Q + + E R QV + V +L+ L+ R K + I G
Sbjct: 100 TE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL-IDG 157
Query: 106 -------------LQDKN-----------IKLSECLSKT----------YSTDVSHTQDS 131
+ L C S Y D + T S
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 132 SSTTSLESITPDHYLKIEVLKLVEENLKLKQAL---------EVASA----------SKD 172
+++++ H ++ E+ +L++ + L + +A ++
Sbjct: 218 DHSSNIKL--RIHSIQAELRRLLKSK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 173 ENEITRMIVEGSSSPPSLDEESM-LGHHDSLIMSNSKLNVSVSNSCNVIRKKERTYLGMF 231
+ +T + +++ SLD SM L + + L+ + + L +
Sbjct: 275 KQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 232 -EFEKSDINII--MKRLITDKFLEGISVVFNACNVIRKKERTYLGMFEFEKSDINIIMKR 288
E + + K + DK I N ++ + + F +I
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPP-SAHIPTIL 391
Query: 289 LITGLPAYIFFMCVRHTDYI-NDEEKVRCLLSAIILNVKRVVKKRYEDLDSTI--LWLTN 345
L + D I +D V L +V+K+ ++ +I ++L
Sbjct: 392 L-----------SLIWFDVIKSDVMVVVNKLHK-----YSLVEKQPKESTISIPSIYLEL 435
Query: 346 LLRLLN-------LLKQYSGEKAFQTDN------------------TEVQNAQCLANFDF 380
++L N ++ Y+ K F +D+ +++ +
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-----RM 490
Query: 381 REYRQVLSDTGVWIYQAVVRFMEEKI 406
+R V D RF+E+KI
Sbjct: 491 TLFRMVFLD---------FRFLEQKI 507
Score = 62.2 bits (150), Expect = 4e-10
Identities = 84/638 (13%), Positives = 193/638 (30%), Gaps = 191/638 (29%)
Query: 62 LANFDFREY----RQVLSDTGVQ--LESEVDELKTRLM------NDREKYLSEIQGLQDK 109
+ NFD ++ + +LS + + S+ T + E ++ +
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 110 NIKL------SECLSKTYSTDVSHTQDSSSTTSLESITPDH------YLKIE--VLKL-V 154
N K +E + T + Q + + YLK+ +L+L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 155 EENLKL-------KQALEVASASKDENEITRM------IVEGSSSPPSLDEESM--LGHH 199
+N+ + K + +M + + + P E + L +
Sbjct: 150 AKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 200 -DSLIMSNSKLNVSVSNSCNVIRKKERTYLGMFEFEKS--------DINIIM------KR 244
D S S + ++ + I+ + R L +E + K
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 245 LITDKFLEGISVVFNACNVIRKKERT---YLGMFEFEKSDINIIMKRL---ITGLPAYIF 298
L+T +F + V + + + + ++ ++++K L LP
Sbjct: 269 LLTTRFKQ----VTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQDLP---- 319
Query: 299 FMCVRHTDYINDEEKVRC--LLSAIILNVKRVVKKRYEDLDSTILWLTNLLRLLNLLKQY 356
E + +II R +++ W K
Sbjct: 320 ------------REVLTTNPRRLSIIAESIRDGLATWDN------W-----------KHV 350
Query: 357 SGEKAFQTDNTEVQNAQCLANFDFREYRQVLSDTGVWIYQAVVRFMEE-KINSIVIPAIL 415
+ +K T +++ L + EYR++ + + F I +I++ +++
Sbjct: 351 NCDKL----TTIIES--SLNVLEPAEYRKM--------FDRLSVFPPSAHIPTILL-SLI 395
Query: 416 -----EFESIPVMSSGKPSRL---GRSESVGSSPG----------DLQAL---LMSFYKL 454
+ + + V++ L ES S P + AL ++ Y +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 455 LVLHGIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNK 514
D I + + Y +IG + HL+ +
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIG-----------------------H---HLKNIEHPER 489
Query: 515 MADGEINEQLSPLIQASQLLQARKTQEDVNTVCEMCNKMSTNQLESLENELNRAR----- 569
M L ++ L R ++ + N S+ N L + +
Sbjct: 490 MT-------LFRMV----FLDFRFLEQKIRHDSTAWNASG-----SILNTLQQLKFYKPY 533
Query: 570 -TENADLRHVMLKENKMNFVTEDEQLLLAFETHKNIIR 606
+N ++ ++F+ + E+ L+ + + +++R
Sbjct: 534 ICDNDPKYERLVNA-ILDFLPKIEENLICSK-YTDLLR 569
Score = 34.8 bits (79), Expect = 0.089
Identities = 16/100 (16%), Positives = 32/100 (32%), Gaps = 23/100 (23%)
Query: 17 KKRYEDLDSTILWLTNLLRLLNLLKQYSGEKAFQTDNTEVQNAQCLANFDFREYRQVLSD 76
+ + D +L +R + SG NT +Q + Y+ + D
Sbjct: 494 RMVFLDFR----FLEQKIRHDSTAWNASGSIL----NT-LQ--------QLKFYKPYICD 536
Query: 77 TGVQLESEVDELKTRLMND-----REKYLSEIQ-GLQDKN 110
+ E V+ + L KY ++ L ++
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 3e-05
Identities = 81/529 (15%), Positives = 141/529 (26%), Gaps = 226/529 (42%)
Query: 125 VSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLK-LKQALEVASASKDENEITRMIVEG 183
+SH S L + + L+ E+ K L + E A+ DE
Sbjct: 11 LSH---GSLEHVL-LVPTASFFIASQLQ--EQFNKILPEPTE-GFAADDE---------- 53
Query: 184 SSSPPSL-----------DEESMLGHHDSLIMSNSKLNVSVSNSCNVIRKKERTYLGMFE 232
++P L E S +G D ++ L + + E YL
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVL----NL---------CLTEFENCYLE--- 97
Query: 233 FEKSDINIIMKRLITD------KFLEGISVVFNACNV----IRKKERTYLGMFEFEKSDI 282
+DI+ + +L+ + K E I A + KK + L F
Sbjct: 98 --GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL----FRAVGE 151
Query: 283 NIIMKRLIT-----GLPAYIFFMCVRHTDYINDEEKVRCLLSAIILNVKRVVKKRYEDLD 337
+L+ G DY +E L R + + Y L
Sbjct: 152 GNA--QLVAIFGGQGNT----------DDYF-EE-----------L---RDLYQTYHVL- 183
Query: 338 STILWLTNLL-----RLLNLLKQ-YSGEKAFQTDNTEVQNAQCLANFDFREYRQVLSDTG 391
+ +L+ L L++ EK F + E
Sbjct: 184 -----VGDLIKFSAETLSELIRTTLDAEKVFT------------QGLNILE--------- 217
Query: 392 VWIYQAVVRFMEEKINSIVIPAILEFESIPVMSSGKP----SRLGR----SESVGSSPGD 443
W+ P SIP+ S P +L ++ +G +PG+
Sbjct: 218 -WLENPSNT-----------PDKDYLLSIPI--SC-PLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 444 L-----------QALLM-----------SFYKLLVLHGIDMEIINQVFKQLYYYIGASSL 481
L Q L+ SF+ + + I +F +IG
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR------KAITVLF-----FIGVRC- 310
Query: 482 NNLLLRKELCHWTRGMQIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQARKTQE 541
Y + L ++ + + E SP
Sbjct: 311 ----------------YEAYPNTSLPPSILEDSLENNE--GVPSP--------------- 337
Query: 542 DVNTVCEM--CNKMSTNQLESLENELNRARTENADLRHVMLKENKMNFV 588
M + ++ Q++ N+ N + + L N V
Sbjct: 338 -------MLSISNLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAKNLV 378
Score = 43.9 bits (103), Expect = 2e-04
Identities = 70/468 (14%), Positives = 128/468 (27%), Gaps = 198/468 (42%)
Query: 14 RVVKKRYEDLDSTILWLTN---------------LLRLLNLLKQYSGEKAFQTDNTEVQN 58
+V+ + ++ L + L++ L+K Y
Sbjct: 82 QVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY-----IT-------- 128
Query: 59 AQCLANFDFREYRQVLSDTGVQLESEVDELKTRLM-------NDREKYLSEIQGLQDK-- 109
A+ +A R + + + L V E +L+ N + Y E++ L
Sbjct: 129 ARIMAK---RPFDKKSNSA---LFRAVGEGNAQLVAIFGGQGNT-DDYFEELRDLYQTYH 181
Query: 110 -NIK---------LSECLSKTYSTDVSHTQ--DSSSTTSLESITPD-------------- 143
+ LSE + T + TQ + S TPD
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLI 241
Query: 144 ------HYLKI-EVLKLVEENLK--LK------QALEVA---SASKDE---NEITRMIVE 182
HY+ ++L L+ LK Q L A + + R +
Sbjct: 242 GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 183 -----G---------SSSPPSLDEES----------MLG----HHDSLIM---------- 204
G +S PPS+ E+S ML + +
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 205 SNSKLNVSVSNS----------------CNVIRKKE--------RTYLGMFEFEKSDINI 240
+ ++ +S+ N +RK + R F +
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI-----PFSE----- 411
Query: 241 IMKRLITDKFLEGISVVFN------ACNVIRKKERTYLGMFEFEKSDINIIMKRLITGLP 294
K +++FL ++ F+ A ++I + F DI I P
Sbjct: 412 -RKLKFSNRFLP-VASPFHSHLLVPASDLI--NKDLVKNNVSFNAKDIQI---------P 458
Query: 295 AYIFFMCVRHTDYINDEEKVRCLLSAIILNVKRVVKKRYEDLDSTILW 342
Y T D +R L +I + + + + W
Sbjct: 459 VY-------DT---FDGSDLRVLSGSISERIVDCI------IRLPVKW 490
Score = 41.6 bits (97), Expect = 8e-04
Identities = 67/394 (17%), Positives = 116/394 (29%), Gaps = 156/394 (39%)
Query: 229 GMFEFEKSDI-NIIMKRLITDKFLE---GISVVFNACNVIRK--KERTYLGMFEFEKSDI 282
GM ++ S + R D + G S++ +++ T F EK
Sbjct: 1632 GMDLYKTSKAAQDVWNR--ADNHFKDTYGFSIL----DIVINNPVNLTIH--FGGEKG-- 1681
Query: 283 NIIMKRLITGLPAYIFFMCVRHTDYINDEEKVRCLLSAIILNVKRVVKKRYEDLDSTILW 342
KR+ A IF + I D K +K +++++
Sbjct: 1682 ----KRIRENYSAMIF-------ETIVDG--------------KLKTEKIFKEINEHSTS 1716
Query: 343 LTNLLRLLNLLKQYSGEKA--FQTDNTEVQNAQCLANFDFREYRQVLSDTGVWIYQAVVR 400
T + EK T T Q A L E A
Sbjct: 1717 YT-----------FRSEKGLLSATQFT--QPALTLM-----EK-------------AAFE 1745
Query: 401 FMEEKINSIVIPAILEFESIPVMSSGKPSRLGRSESVG--SSPGDLQAL-----LMSFYK 453
++ K I A +G S+G + AL +MS
Sbjct: 1746 DLKSK-GLIPADATF---------AG--------HSLGEYA------ALASLADVMSIES 1781
Query: 454 LLVLHGIDMEIINQVFKQLYYYIGASSLNNLLLRKELCHWTRGMQIRYNLSHLEQFTRDN 513
L+ + VF + G ++ + R EL GM I N
Sbjct: 1782 LVEV----------VFYR-----G-MTMQVAVPRDELGRSNYGM-IAIN---------PG 1815
Query: 514 KMADGEINEQLSPLIQASQLLQARKTQEDVNTVCEMCNKMSTNQ----------LESLEN 563
++A E L +++ ++T + E+ N NQ L+++ N
Sbjct: 1816 RVAASFSQEALQYVVERV----GKRTGW----LVEIVNYNVENQQYVAAGDLRALDTVTN 1867
Query: 564 ELNRARTENADLRHVMLKENKMNFVTED--EQLL 595
LN + + D+ L++ + E+ L
Sbjct: 1868 VLNFIKLQKIDIIE--LQK---SLSLEEVEGHLF 1896
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 36.8 bits (85), Expect = 0.024
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 306 DYINDEEKVRCL---LSAII-LNVKRVVKKRYEDLDSTI-----LWLTNLLRLLNLLKQY 356
++I D EK L L AII E +DS + LTN+LR++ +K+
Sbjct: 551 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQ 610
Query: 357 SGEKAFQTDNTEV 369
+ +T +V
Sbjct: 611 KSARGIETRPAQV 623
Score = 30.2 bits (68), Expect = 2.3
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 21 EDLDSTI-----LWLTNLLRLLNLLKQYSGEKAFQTDNTEV 56
E +DS + LTN+LR++ +K+ + +T +V
Sbjct: 583 EHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQV 623
>3j00_Z Cell division protein FTSQ, ingrowth of WALL at septum;
ribonucleoprotein, nucleotide-binding, PR biosynthesis,
translation, zinc-finger, 70S ribosome, ribos
translocon; HET: PEV PGV; 7.10A {Escherichia coli O157}
Length = 98
Score = 28.6 bits (64), Expect = 1.8
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 15/72 (20%)
Query: 338 STILWLTNLLRLLNLLKQY--SGEKAFQTDNTEVQNA----QCLANF---DFREYRQVLS 388
+ W+ + RL L + +GE+ + T N +++ + F D + +
Sbjct: 23 VVLGWMEDAQRLP--LSKLVLTGERHY-TRNDDIRQSILALGEPGTFMTQDVNIIQTQIE 79
Query: 389 DTGVWIYQAVVR 400
+ A +
Sbjct: 80 Q---RLQHARLD 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.0
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 17/36 (47%)
Query: 13 KRVVKKRYEDLDSTILWLTNLLRLLNLLKQYSGEKA 48
K+ +KK L ++ LK Y+ + A
Sbjct: 19 KQALKK----LQAS-------------LKLYADDSA 37
Score = 29.5 bits (65), Expect = 2.0
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 17/36 (47%)
Query: 326 KRVVKKRYEDLDSTILWLTNLLRLLNLLKQYSGEKA 361
K+ +KK L ++ LK Y+ + A
Sbjct: 19 KQALKK----LQAS-------------LKLYADDSA 37
>2cly_B ATP synthase D chain, mitochondrial; mitochondrion, ION transport,
CF(0), stator, transport, acetylation, hydrogen ION
transport; 2.8A {Bos taurus} SCOP: f.53.1.1 PDB: 2wss_U*
Length = 160
Score = 28.4 bits (63), Expect = 4.2
Identities = 10/73 (13%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 47 KAFQTDNTEVQ-----NAQCLANFDFREYRQVLSDTGV--QLESEVDELKTRLMNDREKY 99
+ ++ N + + D+ Y+ ++ G+ E + + LK +KY
Sbjct: 28 NSLKSWNETLTSRLATLPEKPPAIDWAYYKANVAKAGLVDDFEKKFNALKV--PIPEDKY 85
Query: 100 LSEIQGLQDKNIK 112
+++ + +++K
Sbjct: 86 TAQVDAEEKEDVK 98
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex,
oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium
parvum}
Length = 361
Score = 28.3 bits (64), Expect = 7.4
Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 109 KNIKLSECLSKTYSTDVSHTQDSSSTTSLESITPDHYLKIEVLKLVEENLKLKQALEVAS 168
+ + L L+K S + S+ T E + ++ + ++ +N+ ++ +
Sbjct: 30 REVSLETKLTKNVSLKI-PLISSAMDTVTEHLMAVGMARLGGIGIIHKNMDMESQVNEVL 88
Query: 169 ASKDE 173
K+
Sbjct: 89 KVKNS 93
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET:
EPE; 2.50A {Pseudomonas aeruginosa}
Length = 400
Score = 28.4 bits (64), Expect = 7.6
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 71 RQVLSDTGV---QLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLS 114
+L++ + + E+ E T L++ L + L L+
Sbjct: 249 SALLTEFHLPPSSVMFEITE--TGLISAPASSLENLVRLWIMGCGLA 293
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, signaling protein;
HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Length = 259
Score = 27.8 bits (63), Expect = 9.6
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 71 RQVLSDTGV---QLESEVDELKTRLMNDREKYLSEIQGLQDKNIKLS 114
+ L + L+ EV E + +M D E+ ++ L+D L+
Sbjct: 112 AETLRVNRLPRGALKLEVTE--SDIMRDPERAAVILKTLRDAGAGLA 156
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.368
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,635,704
Number of extensions: 506589
Number of successful extensions: 1062
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 34
Length of query: 606
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 507
Effective length of database: 3,937,614
Effective search space: 1996370298
Effective search space used: 1996370298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.9 bits)