RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10329
         (606 letters)



>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 99

 Score = 27.9 bits (62), Expect = 1.0
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 498 QIRYNLSHLEQFTRDNKMADGEINEQLSPLIQASQLLQ-------ARKTQEDVNTVCEMC 550
           +++ + + L Q   + +   G++  Q+  +   +  LQ           Q  V    E  
Sbjct: 2   EMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAA 61

Query: 551 NKMSTNQLESLENELNRART--ENADLRHVMLKENKMNF 587
           NK    +L+ +   + +A      AD        ++M F
Sbjct: 62  NKQ-KQELDEISTNIRQAGVQYSRADEEQQQALSSQMGF 99


>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
           synthetase 1 {Bacillus brevis [TaxId: 1393]}
          Length = 514

 Score = 29.1 bits (64), Expect = 1.6
 Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 396 QAVVRFMEEKINSIVIPAILEF-ESIPVMSSGKPSR 430
           + + +F  E++ + +IP+     + +P+ S+GK  R
Sbjct: 469 EQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDR 504


>d1alya_ b.22.1.1 (A:) Extracellular domain of CD40 ligand {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 146

 Score = 28.0 bits (62), Expect = 1.7
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 155 EENLKLKQALEVASASKDENEITRMIVEGSSSPPSLDEESMLGHHDSLIMSNSKLNVSVS 214
                   +L + S  + E  + R     SS+ P   +   LG    L    + + V+V+
Sbjct: 69  SSQAPFIASLCLKSPGRFERILLRAANTHSSAKPCGQQSIHLGGVFEL-QPGASVFVNVT 127

Query: 215 NSCNVIRKKERTYLGMF 231
           +   V      T  G+ 
Sbjct: 128 DPSQVSHGTGFTSFGLL 144


>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase
           {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 155

 Score = 28.1 bits (62), Expect = 1.9
 Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 450 SFYKLLVLHGIDMEIINQVFKQLYYYIGAS-SLNNLLLRK 488
             Y+L      D ++++ +++ LY  +     L  L   K
Sbjct: 116 KAYRLSSKINADTKLLDSIYRVLYEGLKVEEVLFELATFK 155


>d1s55a1 b.22.1.1 (A:161-316) TRANCE/RANKL cytokine {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 156

 Score = 27.3 bits (60), Expect = 3.6
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 205 SNSKLNVSVSNSCNVIRKKERTYLGMF 231
           +  ++++ VSN   +   ++ TY G F
Sbjct: 124 AGEEISIQVSNPSLLDPDQDATYFGAF 150


>d1dg6a_ b.22.1.1 (A:) Apoptosis-2 ligand, apo2l/TRAIL {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 162

 Score = 27.3 bits (60), Expect = 4.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 205 SNSKLNVSVSNSCNVIRKKERTYLGMF 231
            N ++ VSV+N   +    E ++ G F
Sbjct: 133 ENDRIFVSVTNEHLIDMDHEASFFGAF 159


>d1tnra_ b.22.1.1 (A:) Tumor necrosis factor (TNF) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 144

 Score = 26.9 bits (59), Expect = 4.4
 Identities = 3/29 (10%), Positives = 10/29 (34%)

Query: 203 IMSNSKLNVSVSNSCNVIRKKERTYLGMF 231
           +    +L+       +++      + G F
Sbjct: 114 LTQGDQLSTHTDGIPHLVLSPSTVFFGAF 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0645    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,083,642
Number of extensions: 94790
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 16
Length of query: 606
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 515
Effective length of database: 1,158,166
Effective search space: 596455490
Effective search space used: 596455490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)