Query psy1033
Match_columns 67
No_of_seqs 102 out of 1007
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 15:13:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1033.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1033hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 99.7 9.3E-17 2E-21 108.8 6.0 66 1-66 200-265 (362)
2 smart00636 Glyco_18 Glycosyl h 99.6 5E-16 1.1E-20 104.0 5.6 63 1-66 196-258 (334)
3 cd02878 GH18_zymocin_alpha Zym 99.6 5.5E-15 1.2E-19 100.5 5.9 49 18-66 215-263 (345)
4 cd02873 GH18_IDGF The IDGF's ( 99.5 9.8E-15 2.1E-19 101.4 6.0 63 1-66 234-299 (413)
5 KOG2806|consensus 99.5 1.3E-13 2.8E-18 96.5 5.7 62 1-65 256-317 (432)
6 cd06548 GH18_chitinase The GH1 99.4 1.2E-13 2.7E-18 92.9 4.1 48 1-50 221-268 (322)
7 cd02879 GH18_plant_chitinase_c 99.4 1.7E-13 3.7E-18 91.7 3.7 46 1-52 202-247 (299)
8 cd02875 GH18_chitobiase Chitob 99.2 3.2E-11 7E-16 82.7 4.9 37 17-53 206-242 (358)
9 PF00704 Glyco_hydro_18: Glyco 99.2 4.6E-11 1E-15 79.4 5.2 57 1-60 204-260 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 99.1 5.9E-11 1.3E-15 79.7 2.6 35 18-52 202-237 (318)
11 COG3325 ChiA Chitinase [Carboh 99.1 1.8E-10 4E-15 80.9 4.9 55 1-55 263-324 (441)
12 cd06545 GH18_3CO4_chitinase Th 98.7 8.7E-09 1.9E-13 67.4 2.6 33 18-50 181-214 (253)
13 cd02874 GH18_CFLE_spore_hydrol 98.4 1.2E-07 2.5E-12 63.5 2.0 33 19-52 194-226 (313)
14 cd06549 GH18_trifunctional GH1 98.2 9.7E-07 2.1E-11 59.1 2.4 32 20-52 187-218 (298)
15 COG3858 Predicted glycosyl hyd 96.7 0.0007 1.5E-08 48.0 1.0 33 20-53 299-331 (423)
16 cd06544 GH18_narbonin Narbonin 92.5 0.15 3.3E-06 33.8 3.0 31 19-49 190-222 (253)
17 PF08869 XisI: XisI protein; 90.9 0.11 2.3E-06 31.0 0.8 28 22-49 78-106 (111)
18 cd06546 GH18_CTS3_chitinase GH 82.9 1.5 3.2E-05 29.0 2.8 21 23-43 197-217 (256)
19 cd02871 GH18_chitinase_D-like 82.8 1.3 2.8E-05 29.9 2.6 13 32-44 236-248 (312)
20 KOG2091|consensus 81.1 1.2 2.7E-05 31.3 2.0 32 20-51 278-309 (392)
21 cd08345 Fosfomycin_RP Fosfomyc 64.5 10 0.00022 20.6 2.8 39 19-57 67-105 (113)
22 PRK00040 rpsP 30S ribosomal pr 55.1 6.2 0.00014 21.8 0.8 21 17-38 51-71 (75)
23 TIGR00002 S16 ribosomal protei 52.8 6.9 0.00015 21.8 0.7 21 17-38 48-68 (78)
24 PF02126 PTE: Phosphotriestera 51.9 9.7 0.00021 26.1 1.5 24 19-42 168-191 (308)
25 KOG3419|consensus 51.5 24 0.00052 21.0 2.9 22 17-39 53-74 (112)
26 PRK14522 rpsP 30S ribosomal pr 51.1 15 0.00032 22.1 2.0 21 17-38 49-69 (116)
27 cd06542 GH18_EndoS-like Endo-b 50.4 7.3 0.00016 25.2 0.7 20 29-48 191-210 (255)
28 CHL00005 rps16 ribosomal prote 49.5 8 0.00017 21.8 0.7 21 17-38 47-67 (82)
29 PRK14520 rpsP 30S ribosomal pr 49.1 15 0.00032 23.2 1.8 22 17-39 50-71 (155)
30 PRK14525 rpsP 30S ribosomal pr 47.9 8.7 0.00019 21.9 0.7 21 17-38 50-70 (88)
31 PF06940 DUF1287: Domain of un 47.9 13 0.00029 23.6 1.5 39 15-53 32-75 (164)
32 PF13606 Ank_3: Ankyrin repeat 47.9 25 0.00053 15.5 2.1 14 22-35 16-29 (30)
33 PF03688 Nepo_coat_C: Nepoviru 45.4 6.6 0.00014 24.7 -0.1 8 40-47 156-163 (163)
34 PRK14524 rpsP 30S ribosomal pr 44.0 11 0.00023 21.8 0.6 22 17-39 49-70 (94)
35 PRK14521 rpsP 30S ribosomal pr 43.8 21 0.00045 23.1 2.0 31 17-48 50-80 (186)
36 TIGR00250 RNAse_H_YqgF RNAse H 42.9 29 0.00063 20.7 2.4 22 22-44 38-59 (130)
37 KOG4465|consensus 42.4 41 0.00089 24.6 3.4 40 17-58 535-576 (598)
38 cd07240 ED_TypeI_classII_N N-t 42.1 27 0.00059 18.9 2.1 39 19-57 70-108 (117)
39 PF07519 Tannase: Tannase and 37.9 46 0.00099 24.1 3.2 24 17-40 413-436 (474)
40 PRK09875 putative hydrolase; P 37.8 32 0.0007 23.4 2.3 22 22-43 167-188 (292)
41 PF02230 Abhydrolase_2: Phosph 37.3 38 0.00083 21.1 2.5 21 20-40 90-110 (216)
42 cd07263 Glo_EDI_BRP_like_16 Th 36.3 41 0.00089 17.9 2.3 39 18-57 76-114 (119)
43 cd02877 GH18_hevamine_XipI_cla 36.0 44 0.00095 22.5 2.7 25 20-45 203-230 (280)
44 cd08354 Glo_EDI_BRP_like_13 Th 35.3 58 0.0012 17.7 2.8 37 19-56 79-115 (122)
45 KOG1411|consensus 34.9 29 0.00063 25.0 1.8 23 24-46 42-64 (427)
46 PRK00109 Holliday junction res 34.8 45 0.00097 20.1 2.4 22 22-44 44-65 (138)
47 cd07247 SgaA_N_like N-terminal 34.4 47 0.001 17.9 2.3 40 17-56 69-108 (114)
48 COG0228 RpsP Ribosomal protein 33.3 45 0.00098 19.1 2.1 19 17-36 50-68 (87)
49 PF00886 Ribosomal_S16: Riboso 33.0 16 0.00034 19.3 0.1 17 17-34 45-61 (62)
50 cd06587 Glo_EDI_BRP_like This 32.4 76 0.0016 16.1 3.0 38 18-55 70-107 (112)
51 COG0180 TrpS Tryptophanyl-tRNA 31.9 49 0.0011 23.0 2.4 23 17-39 62-84 (314)
52 PF14681 UPRTase: Uracil phosp 31.3 31 0.00068 22.0 1.4 27 15-41 132-158 (207)
53 PF00691 OmpA: OmpA family; I 30.7 64 0.0014 17.3 2.4 19 21-39 57-75 (97)
54 PF06925 MGDG_synth: Monogalac 30.6 54 0.0012 19.8 2.3 24 19-42 144-168 (169)
55 cd07238 Glo_EDI_BRP_like_5 Thi 30.2 61 0.0013 17.5 2.3 40 17-57 65-105 (112)
56 COG2103 Predicted sugar phosph 30.0 88 0.0019 21.7 3.4 31 18-48 113-143 (298)
57 cd02430 PTH2 Peptidyl-tRNA hyd 28.9 70 0.0015 18.8 2.5 21 22-44 39-59 (115)
58 TIGR00233 trpS tryptophanyl-tR 28.7 45 0.00098 23.0 1.9 24 17-40 58-81 (328)
59 PRK14523 rpsP 30S ribosomal pr 27.3 29 0.00062 21.5 0.6 21 17-38 51-71 (137)
60 PF11054 Surface_antigen: Spor 27.3 66 0.0014 21.8 2.4 26 16-41 115-145 (254)
61 PF12681 Glyoxalase_2: Glyoxal 25.5 83 0.0018 16.6 2.3 40 17-56 64-103 (108)
62 PF09288 UBA_3: Fungal ubiquit 25.5 15 0.00032 19.3 -0.8 19 22-40 11-29 (55)
63 KOG1017|consensus 25.2 1.1E+02 0.0024 20.5 3.1 26 16-41 201-226 (267)
64 PF00688 TGFb_propeptide: TGF- 24.7 72 0.0016 19.8 2.2 26 17-42 177-202 (238)
65 PF07397 DUF1502: Repeat of un 24.6 51 0.0011 15.4 1.1 11 57-67 4-14 (34)
66 PLN02886 aminoacyl-tRNA ligase 22.9 92 0.002 22.3 2.6 24 18-41 101-124 (389)
67 cd07249 MMCE Methylmalonyl-CoA 22.9 96 0.0021 16.8 2.3 37 17-53 80-116 (128)
68 PF06035 Peptidase_C93: Bacter 22.9 79 0.0017 20.1 2.0 24 19-42 80-106 (170)
69 COG4002 Predicted phosphotrans 22.7 51 0.0011 22.2 1.2 32 25-56 65-102 (256)
70 smart00775 LNS2 LNS2 domain. T 22.7 76 0.0016 19.3 1.9 21 19-39 127-147 (157)
71 COG0816 Predicted endonuclease 22.5 1E+02 0.0022 18.9 2.4 11 33-43 53-63 (141)
72 PF00023 Ank: Ankyrin repeat H 22.1 88 0.0019 13.5 2.2 17 20-36 14-30 (33)
73 COG1735 Php Predicted metal-de 20.9 93 0.002 21.8 2.2 22 20-41 178-199 (316)
74 COG1182 AcpD Acyl carrier prot 20.6 84 0.0018 20.6 1.8 25 22-46 76-100 (202)
75 PF03846 SulA: Cell division i 20.6 1E+02 0.0022 18.6 2.1 14 27-40 77-90 (119)
76 COG1871 CheD Chemotaxis protei 20.0 1E+02 0.0022 19.6 2.1 33 17-49 72-104 (164)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=99.67 E-value=9.3e-17 Score=108.82 Aligned_cols=66 Identities=48% Similarity=0.898 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCCCcCccccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCCCCCCCcCCCC
Q psy1033 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPASEKG 66 (67)
Q Consensus 1 ~~apL~~~~~~~~~~~~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~~~g~p~~g~g 66 (67)
|+|||+..+.++.....++++.+|++|+++|+|++||+||||||||.|++++..++++|+|+.|+|
T Consensus 200 ~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~ 265 (362)
T cd02872 200 HNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPG 265 (362)
T ss_pred CCCCCCCCCCCccccccccHHHHHHHHHHcCCCHHHeEeccccccceeeecCCccCCCCCccCCCC
Confidence 689999887765434578999999999999999999999999999999999888889999998765
No 2
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=99.63 E-value=5e-16 Score=104.00 Aligned_cols=63 Identities=41% Similarity=0.809 Sum_probs=56.3
Q ss_pred CCCCCCCCCCCCCcCccccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCCCCCCCcCCCC
Q psy1033 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPASEKG 66 (67)
Q Consensus 1 ~~apL~~~~~~~~~~~~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~~~g~p~~g~g 66 (67)
|||||+..+.++ ..+|++.+|++|++.|+|++||+||||||||.|++.++.++++++|+.|++
T Consensus 196 ~~spl~~~~~~~---~~~~v~~~v~~~~~~gvp~~KlvlGip~YG~~~~~~~~~~~~~~~~~~g~~ 258 (334)
T smart00636 196 HNAPLYAGPGDP---EKYNVDYAVKYYLCKGVPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPA 258 (334)
T ss_pred CCCcCCCCCCCC---CCccHHHHHHHHHHcCCCHHHeEEeeccccCccccCCCCcCCCCCcccCCC
Confidence 689998877654 368999999999999999999999999999999999988889999998764
No 3
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.57 E-value=5.5e-15 Score=100.48 Aligned_cols=49 Identities=24% Similarity=0.525 Sum_probs=46.2
Q ss_pred ccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCCCCCCCcCCCC
Q psy1033 18 LNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPASEKG 66 (67)
Q Consensus 18 ~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~~~g~p~~g~g 66 (67)
.+++.+|++|+++|+|++|||||||||||+|+++++.++++++|+.|+|
T Consensus 215 ~~~~~~v~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~ 263 (345)
T cd02878 215 TETLDALSMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPG 263 (345)
T ss_pred hhHHHHHHHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCC
Confidence 4689999999999999999999999999999999999999999999875
No 4
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=99.55 E-value=9.8e-15 Score=101.44 Aligned_cols=63 Identities=32% Similarity=0.566 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCcCccccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCC-CCCC--CCCcCCCC
Q psy1033 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPD-STDY--GMPASEKG 66 (67)
Q Consensus 1 ~~apL~~~~~~~~~~~~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~-~~~~--g~p~~g~g 66 (67)
|+||||..... ...+|++.+|++|+++|+|++|||||||||||.|++++++ .++. .+++.|+|
T Consensus 234 ~~apL~~~~~~---~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~ 299 (413)
T cd02873 234 YTAPIYELYER---NPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPG 299 (413)
T ss_pred cCCccCCCccc---cccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCC
Confidence 68999976432 2468999999999999999999999999999999998753 2332 24555543
No 5
>KOG2806|consensus
Probab=99.45 E-value=1.3e-13 Score=96.51 Aligned_cols=62 Identities=31% Similarity=0.589 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCcCccccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCCCCCCCcCCC
Q psy1033 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPASEK 65 (67)
Q Consensus 1 ~~apL~~~~~~~~~~~~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~~~g~p~~g~ 65 (67)
|+||||....+ ....+|+|.+|++|++.|.+++|||||||||||.|++++.+.+ ++.+..+.
T Consensus 256 p~aPl~~~~~~--~~~~~Nvd~~~ky~~~~~~~~~Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~ 317 (432)
T KOG2806|consen 256 PPSPLYKGPSM--TNPKMNVDSLLKYWTEKGLPPSKLVLALPFYGRSWQLLEDSRS-SAAPPFGQ 317 (432)
T ss_pred CCcccCCCCcc--cccCcchhhhHHHHhhcCCCchheEEEEecceehhhhcCCcCC-CCCccCCC
Confidence 68999987541 1246899999999999999999999999999999999986555 55444443
No 6
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=99.43 E-value=1.2e-13 Score=92.85 Aligned_cols=48 Identities=38% Similarity=0.713 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCcCccccHHHHHHHHHHcCCCCCceEEEeccceeeeee
Q psy1033 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTL 50 (67)
Q Consensus 1 ~~apL~~~~~~~~~~~~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l 50 (67)
||||||..+.++. ..+|++.+|++|+++|+|++|||||||||||+|++
T Consensus 221 ~~spL~~~~~~~~--~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~ 268 (322)
T cd06548 221 HHSNLYASPADPP--GGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG 268 (322)
T ss_pred CCCCCCCCCCCCC--CCccHHHHHHHHHHcCCCHHHeEEEecccccccCC
Confidence 7899998876542 46899999999999999999999999999999987
No 7
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=99.41 E-value=1.7e-13 Score=91.73 Aligned_cols=46 Identities=37% Similarity=0.842 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCCcCccccHHHHHHHHHHcCCCCCceEEEeccceeeeeecC
Q psy1033 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVN 52 (67)
Q Consensus 1 ~~apL~~~~~~~~~~~~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~ 52 (67)
|+||||..+. .+|++.+|++|+++|+|++|||||||||||+|++-+
T Consensus 202 ~~a~l~~~~~------~~~~~~~v~~~~~~g~p~~KlvlGvp~YGr~~~~~D 247 (299)
T cd02879 202 PAAALYDPNS------NVSTDYGIKSWIKAGVPAKKLVLGLPLYGRAWTLYD 247 (299)
T ss_pred CCCcCCCCCC------CCCHHHHHHHHHHcCCCHHHEEEEeccccccccccC
Confidence 5688886532 479999999999999999999999999999998744
No 8
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.18 E-value=3.2e-11 Score=82.66 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=33.8
Q ss_pred cccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCC
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNP 53 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~ 53 (67)
..+++.+|++|+++|+|++|||||||||||.|++.+.
T Consensus 206 ~~~v~~~v~~~~~~gvp~~KLvLGip~YGr~w~~~~~ 242 (358)
T cd02875 206 YSQTLSGYNNFTKLGIDPKKLVMGLPWYGYDYPCLNG 242 (358)
T ss_pred chhHHHHHHHHHHcCCCHHHeEEEeCCCCCceeCCCC
Confidence 4579999999999999999999999999999997654
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.17 E-value=4.6e-11 Score=79.44 Aligned_cols=57 Identities=42% Similarity=0.696 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCcCccccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCCCCCC
Q psy1033 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60 (67)
Q Consensus 1 ~~apL~~~~~~~~~~~~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~~~g~ 60 (67)
|++||+....+ ...++++.+|++|++.|+|++||+||+|+|||.|++.....+...+
T Consensus 204 ~~~~l~~~~~~---~~~~~~~~~v~~~~~~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~ 260 (343)
T PF00704_consen 204 PNAPLYDSSWD---SNYYSVDSAVQYWIKAGVPPSKLVLGLPFYGRSWTLVNGSPNGPWG 260 (343)
T ss_dssp TSSSSSHTTTS---GTSSSHHHHHHHHHHTTSTGGGEEEEEESEEEEEESSSSTTSTTTB
T ss_pred cccccccCCcc---CCCceeeeehhhhccccCChhheeecCCcccccceecCCcCCCCCC
Confidence 46777766543 1368999999999999999999999999999999999876655444
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.08 E-value=5.9e-11 Score=79.70 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=32.1
Q ss_pred ccHHHHHHHHHHcC-CCCCceEEEeccceeeeeecC
Q psy1033 18 LNANWSVNYYLYKG-IPANKLLLGLPTYGHSYTLVN 52 (67)
Q Consensus 18 ~n~~~~v~~~~~~G-~~~~KlvlGv~~yGr~~~l~~ 52 (67)
..++.+|++|++.| +|++|||||||||||.|++.+
T Consensus 202 ~~v~~~v~~~~~~~~vp~~KlvlGip~YG~~w~~~~ 237 (318)
T cd02876 202 SWVRSCLELLLPESGKKRAKILLGLNFYGNDYTLPG 237 (318)
T ss_pred HHHHHHHHHHHhcCCCCHHHeEEeccccccccccCC
Confidence 36999999999997 999999999999999998864
No 11
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.8e-10 Score=80.87 Aligned_cols=55 Identities=25% Similarity=0.385 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCCc-CccccHHH------HHHHHHHcCCCCCceEEEeccceeeeeecCCCC
Q psy1033 1 PNAPLYPAVTDQGY-FKSLNANW------SVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDS 55 (67)
Q Consensus 1 ~~apL~~~~~~~~~-~~~~n~~~------~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~ 55 (67)
||||||..+.|+.. +..+.++. .++.....++|++|||||+|||||+|..++...
T Consensus 263 h~a~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~ 324 (441)
T COG3325 263 HHAALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGS 324 (441)
T ss_pred cccccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcc
Confidence 89999998887654 22233332 455566678888999999999999999988644
No 12
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=98.71 E-value=8.7e-09 Score=67.36 Aligned_cols=33 Identities=36% Similarity=0.669 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHcCC-CCCceEEEeccceeeeee
Q psy1033 18 LNANWSVNYYLYKGI-PANKLLLGLPTYGHSYTL 50 (67)
Q Consensus 18 ~n~~~~v~~~~~~G~-~~~KlvlGv~~yGr~~~l 50 (67)
..++.+|++|++.|+ |++||+||+|+|||.|+.
T Consensus 181 ~~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w~~ 214 (253)
T cd06545 181 DDAVNDLNYWNERGLASKDKLVLGLPFYGYGFYY 214 (253)
T ss_pred HhHHHHHHHHHHcCCCCHHHEEEEeCCccccccC
Confidence 358889999999998 999999999999999953
No 13
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=98.42 E-value=1.2e-07 Score=63.46 Aligned_cols=33 Identities=36% Similarity=0.662 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeccceeeeeecC
Q psy1033 19 NANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVN 52 (67)
Q Consensus 19 n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~ 52 (67)
.++..+++++ .|+|++||+||||+|||.|++..
T Consensus 194 ~~~~~~~~~~-~gvp~~KlvlGip~YG~~w~~~~ 226 (313)
T cd02874 194 WVERVLQYAV-TQIPREKILLGIPLYGYDWTLPY 226 (313)
T ss_pred HHHHHHHHHH-hcCCHHHEEEeecccccccccCC
Confidence 4667777665 89999999999999999999864
No 14
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=98.19 E-value=9.7e-07 Score=59.15 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCCCCCceEEEeccceeeeeecC
Q psy1033 20 ANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVN 52 (67)
Q Consensus 20 ~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~ 52 (67)
++..+++. ..|+|++||+||||+|||.|++..
T Consensus 187 ~~~~~~~~-~~~vp~~KlvlGip~YG~~w~~~~ 218 (298)
T cd06549 187 FESNLAQA-VKKLPPEKLIVALGSYGYDWTKGG 218 (298)
T ss_pred HHHHHHHH-HhCCCHHHEEEEecccCccccCCC
Confidence 33445543 478999999999999999998754
No 15
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=96.67 E-value=0.0007 Score=48.03 Aligned_cols=33 Identities=36% Similarity=0.656 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCCCCCceEEEeccceeeeeecCC
Q psy1033 20 ANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNP 53 (67)
Q Consensus 20 ~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~ 53 (67)
|...+++-+. -+|++||+||||+||+.|.+...
T Consensus 299 vr~~ieya~T-~iP~~Kv~mGip~YGYDW~~~y~ 331 (423)
T COG3858 299 VRKVIEYALT-VIPAEKVMMGIPLYGYDWTLPYD 331 (423)
T ss_pred Hhhhhhhhhe-ecchHHeEEccccccccccCCCC
Confidence 4555665555 49999999999999999998654
No 16
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=92.54 E-value=0.15 Score=33.82 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=23.4
Q ss_pred cHHHHHHHHHH--cCCCCCceEEEeccceeeee
Q psy1033 19 NANWSVNYYLY--KGIPANKLLLGLPTYGHSYT 49 (67)
Q Consensus 19 n~~~~v~~~~~--~G~~~~KlvlGv~~yGr~~~ 49 (67)
+++.-++.|.+ +++|++||++|+|++++.|.
T Consensus 190 ~~~~~~~~~~~~~~~~p~~Kv~lGl~a~~~~~~ 222 (253)
T cd06544 190 TVAKYVEFYDEVANNYPGKKVLASFSTDGEDGA 222 (253)
T ss_pred CHHHHHHHHHHHHhCCCcccEEEEEecCCCccC
Confidence 44444455433 47999999999999999986
No 17
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=90.89 E-value=0.11 Score=30.98 Aligned_cols=28 Identities=21% Similarity=0.368 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCCCCceEEEecc-ceeeee
Q psy1033 22 WSVNYYLYKGIPANKLLLGLPT-YGHSYT 49 (67)
Q Consensus 22 ~~v~~~~~~G~~~~KlvlGv~~-yGr~~~ 49 (67)
...+.++++|+|++.||||+-- +-|-|+
T Consensus 78 gIa~eLve~GVpk~dIVLgF~~P~~R~~T 106 (111)
T PF08869_consen 78 GIAEELVEAGVPKEDIVLGFHPPEVRQYT 106 (111)
T ss_dssp HHHHHHHHTT--GGGEEETTS-GGGGCCS
T ss_pred HHHHHHHHcCCCHHHEEEccCCccccccc
Confidence 4456789999999999999743 556554
No 18
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=82.90 E-value=1.5 Score=29.05 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=17.6
Q ss_pred HHHHHHHcCCCCCceEEEecc
Q psy1033 23 SVNYYLYKGIPANKLLLGLPT 43 (67)
Q Consensus 23 ~v~~~~~~G~~~~KlvlGv~~ 43 (67)
....|++.+++++||++|+|+
T Consensus 197 ~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 197 DYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred HHHHHHHcCCCcccEEEEEec
Confidence 345577789999999999997
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=82.76 E-value=1.3 Score=29.92 Aligned_cols=13 Identities=46% Similarity=1.063 Sum_probs=12.3
Q ss_pred CCCCceEEEeccc
Q psy1033 32 IPANKLLLGLPTY 44 (67)
Q Consensus 32 ~~~~KlvlGv~~y 44 (67)
+|++||+||+|+.
T Consensus 236 ~p~~Kv~iG~pa~ 248 (312)
T cd02871 236 LPADKVVIGLPAS 248 (312)
T ss_pred CChhhEEEeccCC
Confidence 8999999999997
No 20
>KOG2091|consensus
Probab=81.14 E-value=1.2 Score=31.32 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCCCceEEEeccceeeeeec
Q psy1033 20 ANWSVNYYLYKGIPANKLLLGLPTYGHSYTLV 51 (67)
Q Consensus 20 ~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~ 51 (67)
++.+++...-....+.||.+|+.|||.-|.+.
T Consensus 278 i~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~g 309 (392)
T KOG2091|consen 278 IRHCLHHLGGSSAKRPKILLGLNFYGNDFNLG 309 (392)
T ss_pred HHHHHHHhCCccccccceeEeeeccccccccC
Confidence 45555555444556799999999999999873
No 21
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=64.49 E-value=10 Score=20.61 Aligned_cols=39 Identities=13% Similarity=0.035 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCCC
Q psy1033 19 NANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTD 57 (67)
Q Consensus 19 n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~~ 57 (67)
+++..++.+.++|++..........++|.+...+++.+.
T Consensus 67 d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~ 105 (113)
T cd08345 67 EFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHL 105 (113)
T ss_pred HHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCE
Confidence 567788888999998665444455678888887775443
No 22
>PRK00040 rpsP 30S ribosomal protein S16; Reviewed
Probab=55.07 E-value=6.2 Score=21.83 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=15.9
Q ss_pred cccHHHHHHHHHHcCCCCCceE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLL 38 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klv 38 (67)
.+|.+. +++|++.|+.+.+-|
T Consensus 51 ~ln~er-i~~Wl~~GAqpt~~V 71 (75)
T PRK00040 51 KLDEER-VLYWLGQGAQPTDTV 71 (75)
T ss_pred EEcHHH-HHHHHHCCCccCHHH
Confidence 456655 899999999886543
No 23
>TIGR00002 S16 ribosomal protein S16. This model describes ribosomal S16 of bacteria and organelles.
Probab=52.84 E-value=6.9 Score=21.81 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=16.2
Q ss_pred cccHHHHHHHHHHcCCCCCceE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLL 38 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klv 38 (67)
.++.+. +++|++.|+.+.+-|
T Consensus 48 ~l~~~r-i~~Wl~~GAqps~tV 68 (78)
T TIGR00002 48 KLNVER-IKYWLSKGAQPTDTV 68 (78)
T ss_pred EEcHHH-HHHHHHCCCccCHHH
Confidence 456655 899999999887644
No 24
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=51.89 E-value=9.7 Score=26.08 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=18.3
Q ss_pred cHHHHHHHHHHcCCCCCceEEEec
Q psy1033 19 NANWSVNYYLYKGIPANKLLLGLP 42 (67)
Q Consensus 19 n~~~~v~~~~~~G~~~~KlvlGv~ 42 (67)
.....++.+.+.|++++|+++|--
T Consensus 168 ~~~e~~~il~e~Gv~~~rvvigH~ 191 (308)
T PF02126_consen 168 MGLEQLDILEEEGVDPSRVVIGHM 191 (308)
T ss_dssp CHHHHHHHHHHTT--GGGEEETSG
T ss_pred CHHHHHHHHHHcCCChhHeEEeCC
Confidence 356778999999999999999853
No 25
>KOG3419|consensus
Probab=51.46 E-value=24 Score=21.04 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=17.5
Q ss_pred cccHHHHHHHHHHcCCCCCceEE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLL 39 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klvl 39 (67)
.+|.|. ++||+..|+.+++-+.
T Consensus 53 ~Ln~dR-ikyWl~~GAqpS~tv~ 74 (112)
T KOG3419|consen 53 ALNFDR-IKYWLGVGAQPSDTVE 74 (112)
T ss_pred eecHHH-HHHHHhcCCccChHHH
Confidence 567765 9999999998877654
No 26
>PRK14522 rpsP 30S ribosomal protein S16; Provisional
Probab=51.14 E-value=15 Score=22.11 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=16.2
Q ss_pred cccHHHHHHHHHHcCCCCCceE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLL 38 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klv 38 (67)
.+|.+. |++|++.|+.+..-|
T Consensus 49 ~Ln~eR-i~yWL~~GAqPS~tV 69 (116)
T PRK14522 49 QLKSER-IFYWLNQGAELTEKA 69 (116)
T ss_pred EECHHH-HHHHHHCCCccCHHH
Confidence 456665 999999999887544
No 27
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=50.43 E-value=7.3 Score=25.19 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=17.0
Q ss_pred HcCCCCCceEEEeccceeee
Q psy1033 29 YKGIPANKLLLGLPTYGHSY 48 (67)
Q Consensus 29 ~~G~~~~KlvlGv~~yGr~~ 48 (67)
..|+|++|+++|++|++...
T Consensus 191 ~~g~~~~k~i~~~~~~~~~~ 210 (255)
T cd06542 191 SPKIPPEKMVYTESFEEENG 210 (255)
T ss_pred cCCCCHHHceeeeeeecccC
Confidence 45899999999999997654
No 28
>CHL00005 rps16 ribosomal protein S16
Probab=49.53 E-value=8 Score=21.79 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=16.4
Q ss_pred cccHHHHHHHHHHcCCCCCceE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLL 38 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klv 38 (67)
.+|.+. +++|++.|+.+..-|
T Consensus 47 ~ln~er-i~~Wl~~GAqpt~tV 67 (82)
T CHL00005 47 YLNVPA-ILYFLEKGAQPTETV 67 (82)
T ss_pred EEeHHH-HHHHHHCcCccCHHH
Confidence 567665 999999999887644
No 29
>PRK14520 rpsP 30S ribosomal protein S16; Provisional
Probab=49.14 E-value=15 Score=23.18 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=16.8
Q ss_pred cccHHHHHHHHHHcCCCCCceEE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLL 39 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klvl 39 (67)
.+|.+. ++|||..|+.+..-|.
T Consensus 50 ~ln~eR-i~yWL~~GAQPT~~V~ 71 (155)
T PRK14520 50 EIDSER-AQYWLSVGAQPTEPVL 71 (155)
T ss_pred EEcHHH-HHHHHHCCCccCHHHH
Confidence 456665 8999999998876554
No 30
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=47.94 E-value=8.7 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHHcCCCCCceE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLL 38 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klv 38 (67)
.+|.+. +++|+++|+.+..-|
T Consensus 50 ~ln~er-i~~WL~~GAqpT~tV 70 (88)
T PRK14525 50 ELKVER-IEHWLKAGAKPSQTV 70 (88)
T ss_pred EEcHHH-HHHHHHCCCccCHHH
Confidence 456665 999999999887654
No 31
>PF06940 DUF1287: Domain of unknown function (DUF1287); InterPro: IPR009706 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=47.90 E-value=13 Score=23.55 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=33.4
Q ss_pred CccccHHHHHHHHHHcCCCCCceE-----EEeccceeeeeecCC
Q psy1033 15 FKSLNANWSVNYYLYKGIPANKLL-----LGLPTYGHSYTLVNP 53 (67)
Q Consensus 15 ~~~~n~~~~v~~~~~~G~~~~Klv-----lGv~~yGr~~~l~~~ 53 (67)
.....+|=.++.+.++|++.+|+| --+..|-|.|.|..+
T Consensus 32 ~~GVCTDVViRA~R~~g~DLq~lVheDm~~nf~~Yp~~wgl~~p 75 (164)
T PF06940_consen 32 NTGVCTDVVIRAYRDAGYDLQKLVHEDMKANFSAYPRIWGLKRP 75 (164)
T ss_pred CCCccHHHHHHHHHHcCCCHHHHHHHHHHHCHHhCCcccCCCCC
Confidence 457899999999999999999987 467889999987764
No 32
>PF13606 Ank_3: Ankyrin repeat
Probab=47.89 E-value=25 Score=15.48 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=11.7
Q ss_pred HHHHHHHHcCCCCC
Q psy1033 22 WSVNYYLYKGIPAN 35 (67)
Q Consensus 22 ~~v~~~~~~G~~~~ 35 (67)
+.|+++++.|++.+
T Consensus 16 e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 16 EIVKYLLEHGADVN 29 (30)
T ss_pred HHHHHHHHcCCCCC
Confidence 56999999998865
No 33
>PF03688 Nepo_coat_C: Nepovirus coat protein, C-terminal domain; InterPro: IPR005305 This domain oocurs within nepoviruses. Together with comoviruses and picornaviruses, nepoviruses are classified in the picornavirus superfamily of plus strand single-stranded RNA viruses. This domain aligns several nepovirus coat protein sequences. In several cases, this is found at the C terminus of the RNA2-encoded viral polyprotein. The coat protein consists of three trapezoid-shaped beta-barrel domains, and forms a pseudo T = 3 icosahedral capsid structure [].; GO: 0019028 viral capsid; PDB: 2YI3_L 2Y7U_L 2Y7V_T 2Y7T_D 2YI4_P 2YI2_Q 2Y26_H 1A6C_A.
Probab=45.40 E-value=6.6 Score=24.67 Aligned_cols=8 Identities=50% Similarity=0.962 Sum_probs=5.8
Q ss_pred Eeccceee
Q psy1033 40 GLPTYGHS 47 (67)
Q Consensus 40 Gv~~yGr~ 47 (67)
|+.||||+
T Consensus 156 GF~FYGRS 163 (163)
T PF03688_consen 156 GFEFYGRS 163 (163)
T ss_dssp TEEEEEE-
T ss_pred CceEeCCC
Confidence 58889986
No 34
>PRK14524 rpsP 30S ribosomal protein S16; Provisional
Probab=43.96 E-value=11 Score=21.82 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=16.7
Q ss_pred cccHHHHHHHHHHcCCCCCceEE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLL 39 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klvl 39 (67)
.+|.+. +++|++.|+.+.+-|.
T Consensus 49 ~l~~er-i~~Wl~~GAqpT~tV~ 70 (94)
T PRK14524 49 KVDVER-AVEWILKGAQPSDTVR 70 (94)
T ss_pred EEcHHH-HHHHHHcCCccCHHHH
Confidence 456654 8999999998876553
No 35
>PRK14521 rpsP 30S ribosomal protein S16; Provisional
Probab=43.79 E-value=21 Score=23.14 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=21.3
Q ss_pred cccHHHHHHHHHHcCCCCCceEEEeccceeee
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLGLPTYGHSY 48 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~ 48 (67)
.+|.+. |++||..|+.+..-|.-|=-....|
T Consensus 50 ~Ln~eR-i~~WL~~GAqPTdtV~~lL~~~g~~ 80 (186)
T PRK14521 50 DLNFDR-AVYWLMNGAQPTDTARNILSYEGVL 80 (186)
T ss_pred EEcHHH-HHHHHHCCCcCCHHHHHHHHHcccc
Confidence 567765 8999999999887665444333333
No 36
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=42.88 E-value=29 Score=20.70 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCCCCceEEEeccc
Q psy1033 22 WSVNYYLYKGIPANKLLLGLPTY 44 (67)
Q Consensus 22 ~~v~~~~~~G~~~~KlvlGv~~y 44 (67)
..+..+++. ..+++||+|+|.-
T Consensus 38 ~~l~~~i~~-~~~~~iVvGlP~~ 59 (130)
T TIGR00250 38 SRIEELLKE-WTPDKIVVGLPLN 59 (130)
T ss_pred HHHHHHHHH-cCCCEEEEeccCC
Confidence 456666666 5679999999974
No 37
>KOG4465|consensus
Probab=42.38 E-value=41 Score=24.56 Aligned_cols=40 Identities=13% Similarity=0.329 Sum_probs=29.3
Q ss_pred cccHHHHHHHHHHc-CCC-CCceEEEeccceeeeeecCCCCCCC
Q psy1033 17 SLNANWSVNYYLYK-GIP-ANKLLLGLPTYGHSYTLVNPDSTDY 58 (67)
Q Consensus 17 ~~n~~~~v~~~~~~-G~~-~~KlvlGv~~yGr~~~l~~~~~~~~ 58 (67)
...-..+++.|.++ +++ ++-||+++..|+ |+.+++++.|+
T Consensus 535 eihp~~aik~yrea~~i~dakliv~amqa~d--~siadp~dagm 576 (598)
T KOG4465|consen 535 EIHPAEAIKEYREAMDIHDAKLIVCAMQAND--FSIADPDDAGM 576 (598)
T ss_pred ccCHHHHHHHHHHhcCCCcceEEEEEeecCC--ceecCcccccc
Confidence 34556788888775 777 556778888887 77888777765
No 38
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=42.11 E-value=27 Score=18.88 Aligned_cols=39 Identities=13% Similarity=0.113 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCCC
Q psy1033 19 NANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTD 57 (67)
Q Consensus 19 n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~~ 57 (67)
.++...+.+.+.|+........-+.+++.+...++..+.
T Consensus 70 ~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ 108 (117)
T cd07240 70 DLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHL 108 (117)
T ss_pred HHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCE
Confidence 567778888888987655444456678888888876543
No 39
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=37.86 E-value=46 Score=24.12 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=21.0
Q ss_pred cccHHHHHHHHHHcCCCCCceEEE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLG 40 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlG 40 (67)
.++.-.++..|+|.|..|+.|+.-
T Consensus 413 ~~d~l~aL~~WVE~G~AP~~l~at 436 (474)
T PF07519_consen 413 PFDALTALVDWVENGKAPETLVAT 436 (474)
T ss_pred CCCHHHHHHHHHhCCCCCCeeEEE
Confidence 568889999999999999998754
No 40
>PRK09875 putative hydrolase; Provisional
Probab=37.77 E-value=32 Score=23.38 Aligned_cols=22 Identities=9% Similarity=0.146 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCCCCceEEEecc
Q psy1033 22 WSVNYYLYKGIPANKLLLGLPT 43 (67)
Q Consensus 22 ~~v~~~~~~G~~~~KlvlGv~~ 43 (67)
..++...+.|++++|+++|-.-
T Consensus 167 e~l~il~e~Gvd~~rvvi~H~d 188 (292)
T PRK09875 167 EQLALLQAHGVDLSRVTVGHCD 188 (292)
T ss_pred HHHHHHHHcCcCcceEEEeCCC
Confidence 3477888999999999999874
No 41
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=37.33 E-value=38 Score=21.12 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=13.7
Q ss_pred HHHHHHHHHHcCCCCCceEEE
Q psy1033 20 ANWSVNYYLYKGIPANKLLLG 40 (67)
Q Consensus 20 ~~~~v~~~~~~G~~~~KlvlG 40 (67)
++..|+.+++.+++++||+|+
T Consensus 90 l~~li~~~~~~~i~~~ri~l~ 110 (216)
T PF02230_consen 90 LDELIDEEVAYGIDPSRIFLG 110 (216)
T ss_dssp HHHHHHHHHHTT--GGGEEEE
T ss_pred HHHHHHHHHHcCCChhheehh
Confidence 455566677789999998864
No 42
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=36.31 E-value=41 Score=17.92 Aligned_cols=39 Identities=13% Similarity=0.121 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCCC
Q psy1033 18 LNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTD 57 (67)
Q Consensus 18 ~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~~ 57 (67)
-+++..++..+++|++..+.... ..+++.+.+.++..+.
T Consensus 76 ~di~~~~~~l~~~g~~~~~~~~~-~~~~~~~~~~DP~G~~ 114 (119)
T cd07263 76 DDIDATYEELKARGVEFSEEPRE-MPYGTVAVFRDPDGNL 114 (119)
T ss_pred hHHHHHHHHHHhCCCEEeecccc-CCCceEEEEECCCCCE
Confidence 46888888899999866554422 3467888888876443
No 43
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=36.05 E-value=44 Score=22.53 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCCC---CceEEEeccce
Q psy1033 20 ANWSVNYYLYKGIPA---NKLLLGLPTYG 45 (67)
Q Consensus 20 ~~~~v~~~~~~G~~~---~KlvlGv~~yG 45 (67)
.....+.|.+. ++. .||+||+|..-
T Consensus 203 ~~~~~~~w~~~-~~~~~~~kv~lGlpas~ 230 (280)
T cd02877 203 FNFNWDTWTSW-AKATSNAKVFLGLPASP 230 (280)
T ss_pred hhhHHHHHHHh-cccCCCceEEEecccCC
Confidence 34556677765 555 89999999873
No 44
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=35.33 E-value=58 Score=17.66 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=25.6
Q ss_pred cHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCC
Q psy1033 19 NANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDST 56 (67)
Q Consensus 19 n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~ 56 (67)
+++..++.+.++|+......- ....++.+.+.++..+
T Consensus 79 dl~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~DP~G~ 115 (122)
T cd08354 79 ELAEWEAHLEAKGVAIESEVQ-WPRGGRSLYFRDPDGN 115 (122)
T ss_pred HHHHHHHHHHhcCCceecccc-CCCCeeEEEEECCCCC
Confidence 577888888889986554332 3556788888776544
No 45
>KOG1411|consensus
Probab=34.95 E-value=29 Score=25.01 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=17.3
Q ss_pred HHHHHHcCCCCCceEEEecccee
Q psy1033 24 VNYYLYKGIPANKLLLGLPTYGH 46 (67)
Q Consensus 24 v~~~~~~G~~~~KlvlGv~~yGr 46 (67)
|..-.+.--++.||+|||.+|--
T Consensus 42 VTeAfk~D~n~~KiNLgvGaYRd 64 (427)
T KOG1411|consen 42 VTEAFKKDPNPKKINLGVGAYRD 64 (427)
T ss_pred HHHHHhcCCCcceeeecccceec
Confidence 33345566889999999999953
No 46
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=34.77 E-value=45 Score=20.09 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=15.4
Q ss_pred HHHHHHHHcCCCCCceEEEeccc
Q psy1033 22 WSVNYYLYKGIPANKLLLGLPTY 44 (67)
Q Consensus 22 ~~v~~~~~~G~~~~KlvlGv~~y 44 (67)
..+..+++. ...++||+|+|.-
T Consensus 44 ~~l~~~i~~-~~i~~iVvGlP~~ 65 (138)
T PRK00109 44 DRLEKLIKE-WQPDGLVVGLPLN 65 (138)
T ss_pred HHHHHHHHH-hCCCEEEEeccCC
Confidence 335555554 4679999999985
No 47
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=34.39 E-value=47 Score=17.94 Aligned_cols=40 Identities=10% Similarity=0.049 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCC
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDST 56 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~ 56 (67)
.-+++...+.++++|+...+=..-.+.+++.+.+.++..+
T Consensus 69 v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~ 108 (114)
T cd07247 69 VDDVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGA 108 (114)
T ss_pred eCCHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCC
Confidence 3468888999999997432211223567788888777554
No 48
>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]
Probab=33.29 E-value=45 Score=19.06 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=13.9
Q ss_pred cccHHHHHHHHHHcCCCCCc
Q psy1033 17 SLNANWSVNYYLYKGIPANK 36 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~K 36 (67)
.++. .-+.+|+++|+.+.-
T Consensus 50 ~l~~-eri~~Wl~~GAqpSd 68 (87)
T COG0228 50 KLDE-ERILYWLSQGAQPSD 68 (87)
T ss_pred EEcH-HHHHHHHHcCCcccH
Confidence 3444 458999999998754
No 49
>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....
Probab=33.00 E-value=16 Score=19.34 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=13.1
Q ss_pred cccHHHHHHHHHHcCCCC
Q psy1033 17 SLNANWSVNYYLYKGIPA 34 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~ 34 (67)
.++++. +++|++.|+.+
T Consensus 45 ~l~~er-i~~Wl~~GAqp 61 (62)
T PF00886_consen 45 KLNFER-IKYWLSKGAQP 61 (62)
T ss_dssp EETHHH-HHHHHHTTEEE
T ss_pred EeCHHH-HHHHHHcCcCC
Confidence 566665 89999999754
No 50
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=32.39 E-value=76 Score=16.15 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCC
Q psy1033 18 LNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDS 55 (67)
Q Consensus 18 ~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~ 55 (67)
-+++..++.+.+.|+........-...++.+.+.++..
T Consensus 70 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G 107 (112)
T cd06587 70 DDVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDG 107 (112)
T ss_pred CCHHHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCC
Confidence 46688888889988877655444556677888777653
No 51
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=31.90 E-value=49 Score=23.02 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=19.1
Q ss_pred cccHHHHHHHHHHcCCCCCceEE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLL 39 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klvl 39 (67)
..++...+..|+..|++++|.++
T Consensus 62 ~~~~~e~~a~~LA~GiDP~k~~i 84 (314)
T COG0180 62 RQATREVAADYLAVGLDPEKSTI 84 (314)
T ss_pred HHHHHHHHHHHHHhccCccccEE
Confidence 45677888899999999999665
No 52
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=31.28 E-value=31 Score=22.01 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=21.6
Q ss_pred CccccHHHHHHHHHHcCCCCCceEEEe
Q psy1033 15 FKSLNANWSVNYYLYKGIPANKLLLGL 41 (67)
Q Consensus 15 ~~~~n~~~~v~~~~~~G~~~~KlvlGv 41 (67)
.+.-++-.+|+.+++.|++.++|++--
T Consensus 132 aTG~s~~~ai~~L~~~G~~~~~I~~v~ 158 (207)
T PF14681_consen 132 ATGGSAIAAIEILKEHGVPEENIIIVS 158 (207)
T ss_dssp SSSHHHHHHHHHHHHTTG-GGEEEEEE
T ss_pred cchhhHHHHHHHHHHcCCCcceEEEEE
Confidence 346788899999999999999988753
No 53
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=30.73 E-value=64 Score=17.33 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCCCceEE
Q psy1033 21 NWSVNYYLYKGIPANKLLL 39 (67)
Q Consensus 21 ~~~v~~~~~~G~~~~Klvl 39 (67)
+...+++++.|+++++|.+
T Consensus 57 ~~V~~~L~~~gi~~~ri~~ 75 (97)
T PF00691_consen 57 EAVKQYLVENGIPPERISV 75 (97)
T ss_dssp HHHHHHHHHTTSSGGGEEE
T ss_pred HHHHHHHHHcCCChHhEEE
Confidence 3445666778999999954
No 54
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=30.58 E-value=54 Score=19.84 Aligned_cols=24 Identities=21% Similarity=0.522 Sum_probs=18.7
Q ss_pred cHHHHHHHHHHcCCCCCceEE-Eec
Q psy1033 19 NANWSVNYYLYKGIPANKLLL-GLP 42 (67)
Q Consensus 19 n~~~~v~~~~~~G~~~~Klvl-Gv~ 42 (67)
-.+.+-+.+++.|++++||.+ |||
T Consensus 144 ase~~~~~l~~~Gi~~~~I~vtGiP 168 (169)
T PF06925_consen 144 ASEEVKEELIERGIPPERIHVTGIP 168 (169)
T ss_pred CCHHHHHHHHHcCCChhHEEEeCcc
Confidence 456778888999999999854 554
No 55
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=30.24 E-value=61 Score=17.49 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=26.2
Q ss_pred cccHHHHHHHHHHcCCCCCceEEEeccce-eeeeecCCCCCC
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLGLPTYG-HSYTLVNPDSTD 57 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlGv~~yG-r~~~l~~~~~~~ 57 (67)
..+++..++.+.++|+...+-..-.+ +| |.+...+++.+.
T Consensus 65 v~d~~~~~~~l~~~G~~~~~~~~~~~-~g~~~~~~~DP~Gn~ 105 (112)
T cd07238 65 VDDVDAALARAVAAGFAIVYGPTDEP-WGVRRFFVRDPFGKL 105 (112)
T ss_pred eCCHHHHHHHHHhcCCeEecCCccCC-CceEEEEEECCCCCE
Confidence 45788999999999987433222223 45 777777776543
No 56
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=29.95 E-value=88 Score=21.70 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHcCCCCCceEEEeccceeee
Q psy1033 18 LNANWSVNYYLYKGIPANKLLLGLPTYGHSY 48 (67)
Q Consensus 18 ~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~ 48 (67)
-+.+.+.+...+.++..+.+|+||+.-||+=
T Consensus 113 D~~~~g~~dl~~~~lt~~DvvvgIaASGrTP 143 (298)
T COG2103 113 DDEELGEADLKNIGLTAKDVVVGIAASGRTP 143 (298)
T ss_pred ccHHHHHHHHHHcCCCcCCEEEEEecCCCCc
Confidence 3566777788899999999999999999984
No 57
>cd02430 PTH2 Peptidyl-tRNA hydrolase, type 2 (PTH2). Peptidyl-tRNA hydrolase (PTH) activity releases tRNA from the premature translation termination product peptidyl-tRNA, therefore allowing the tRNA and peptide to be reused in protein synthesis. PTH2 is present in archaea and eukaryotes.
Probab=28.87 E-value=70 Score=18.84 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.0
Q ss_pred HHHHHHHHcCCCCCceEEEeccc
Q psy1033 22 WSVNYYLYKGIPANKLLLGLPTY 44 (67)
Q Consensus 22 ~~v~~~~~~G~~~~KlvlGv~~y 44 (67)
..+++|.+.| ..|+||.++--
T Consensus 39 ~~~~~W~~~G--~~KiVl~~~~~ 59 (115)
T cd02430 39 ELLRAWEREG--QKKIVLKVNSE 59 (115)
T ss_pred HHHHHHHhcC--CcEEEEecCCH
Confidence 4678999999 68999988753
No 58
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=28.73 E-value=45 Score=22.96 Aligned_cols=24 Identities=13% Similarity=-0.011 Sum_probs=19.8
Q ss_pred cccHHHHHHHHHHcCCCCCceEEE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLG 40 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlG 40 (67)
..++...+..|+..|++++|..+=
T Consensus 58 ~~~~~~~~~~~lA~GlDp~k~~if 81 (328)
T TIGR00233 58 RKAREELAADILAVGLDPKKTFIF 81 (328)
T ss_pred HHHHHHHHHHHHHhCcChhheEEE
Confidence 456777788999999999998764
No 59
>PRK14523 rpsP 30S ribosomal protein S16; Provisional
Probab=27.32 E-value=29 Score=21.48 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=16.1
Q ss_pred cccHHHHHHHHHHcCCCCCceE
Q psy1033 17 SLNANWSVNYYLYKGIPANKLL 38 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~Klv 38 (67)
.+|++. |++|+..|+.+..-|
T Consensus 51 ~Ln~eR-i~yWL~~GAQPS~tV 71 (137)
T PRK14523 51 QLEKER-ISHWLNQGAQTSLRV 71 (137)
T ss_pred EECHHH-HHHHHHCCCccCHHH
Confidence 456665 999999999887554
No 60
>PF11054 Surface_antigen: Sporozoite TA4 surface antigen; InterPro: IPR021288 This family of proteins is a Eukaryotic family of surface antigens. One of the better characterised members of the family is the sporulated TA4 antigen. The TA4 gene encodes a single polypeptide of 25 kDa which contains a 17 and a 8kDa polypeptide [].
Probab=27.28 E-value=66 Score=21.85 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=21.5
Q ss_pred ccccHHHHHHHHHHc-----CCCCCceEEEe
Q psy1033 16 KSLNANWSVNYYLYK-----GIPANKLLLGL 41 (67)
Q Consensus 16 ~~~n~~~~v~~~~~~-----G~~~~KlvlGv 41 (67)
.+-+.+.+|+||... |+||.|-..+-
T Consensus 115 ~~~dCk~aVdYWKaafknF~glPPs~~~~~~ 145 (254)
T PF11054_consen 115 EKPDCKEAVDYWKAAFKNFTGLPPSKTAANK 145 (254)
T ss_pred CCCChHHHHHHHHHHHhhcCCCCCChhhccc
Confidence 467899999999885 89998877765
No 61
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=25.53 E-value=83 Score=16.62 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=25.0
Q ss_pred cccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCCCCC
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDST 56 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~~~~ 56 (67)
..+++...+.+.++|+....-..--+.-.|.+.+.++..+
T Consensus 64 v~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~ 103 (108)
T PF12681_consen 64 VEDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGN 103 (108)
T ss_dssp ESHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-
T ss_pred EcCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCC
Confidence 3578999999999997643322223333388888776543
No 62
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=25.47 E-value=15 Score=19.30 Aligned_cols=19 Identities=16% Similarity=0.099 Sum_probs=11.6
Q ss_pred HHHHHHHHcCCCCCceEEE
Q psy1033 22 WSVNYYLYKGIPANKLLLG 40 (67)
Q Consensus 22 ~~v~~~~~~G~~~~KlvlG 40 (67)
..|+.+...|++.+|+|=.
T Consensus 11 ~lVd~F~~mGF~~dkVvev 29 (55)
T PF09288_consen 11 DLVDQFENMGFERDKVVEV 29 (55)
T ss_dssp HHHHHHHHHT--HHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHH
Confidence 3477777888887777633
No 63
>KOG1017|consensus
Probab=25.18 E-value=1.1e+02 Score=20.52 Aligned_cols=26 Identities=15% Similarity=0.205 Sum_probs=22.4
Q ss_pred ccccHHHHHHHHHHcCCCCCceEEEe
Q psy1033 16 KSLNANWSVNYYLYKGIPANKLLLGL 41 (67)
Q Consensus 16 ~~~n~~~~v~~~~~~G~~~~KlvlGv 41 (67)
+...+-.+|+.+++.|+|.+-|+|--
T Consensus 201 tGnTV~~Av~VL~EhgVp~s~IiL~s 226 (267)
T KOG1017|consen 201 TGNTVCKAVEVLKEHGVPDSNIILVS 226 (267)
T ss_pred CCccHHHHHHHHHHcCCCcccEEEEE
Confidence 45678899999999999999998853
No 64
>PF00688 TGFb_propeptide: TGF-beta propeptide; InterPro: IPR001111 The transforming growth factor beta, N terminus (TGFb) domain is present in a variety of proteins which include the transforming growth factor beta, decapentaplegic proteins and bone morphogenetic proteins. Transforming growth factor beta is a multifunctional peptide that controls proliferation, differentiation and other functions in many cell types. The decapentaplegic protein acts as an extracellular morphogen responsible for the proper development of the embryonic dorsal hypoderm, for viability of larvae and for cell viability of the epithelial cells in the imaginal disks. Bone morphogenetic protein induces cartilage and bone formation and may be responsible for epithelial osteogenesis in some organisms.; GO: 0008083 growth factor activity, 0040007 growth; PDB: 3RJR_A.
Probab=24.72 E-value=72 Score=19.83 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=18.0
Q ss_pred cccHHHHHHHHHHcCCCCCceEEEec
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLGLP 42 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlGv~ 42 (67)
.+++..+|+.|++.+.....|.|.+.
T Consensus 177 ~~dvt~~v~~W~~~~~~n~gl~l~~~ 202 (238)
T PF00688_consen 177 SFDVTSAVRRWLRNPEKNLGLELEVE 202 (238)
T ss_dssp EEE-HHHHHHHHH---S-EEEEEEEE
T ss_pred eEhHHHHHHHHHhCCCCCccEEEEEE
Confidence 57899999999999888778888884
No 65
>PF07397 DUF1502: Repeat of unknown function (DUF1502); InterPro: IPR010871 This family consists of a number of repeats of around 34 residues in length. Members of this family seem to be found in Talaromyces stipitatus and in Murid herpesvirus 4 (MuHV-4) proteins. The function of these repeats and the proetins in which they are found is unknown.
Probab=24.60 E-value=51 Score=15.41 Aligned_cols=11 Identities=45% Similarity=0.800 Sum_probs=6.0
Q ss_pred CCCCCcCCCCC
Q psy1033 57 DYGMPASEKGP 67 (67)
Q Consensus 57 ~~g~p~~g~g~ 67 (67)
+.|||+-|.|+
T Consensus 4 gagcp~RGAGp 14 (34)
T PF07397_consen 4 GAGCPARGAGP 14 (34)
T ss_pred ccCCcccCcCC
Confidence 45666665553
No 66
>PLN02886 aminoacyl-tRNA ligase
Probab=22.93 E-value=92 Score=22.29 Aligned_cols=24 Identities=21% Similarity=0.168 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHcCCCCCceEEEe
Q psy1033 18 LNANWSVNYYLYKGIPANKLLLGL 41 (67)
Q Consensus 18 ~n~~~~v~~~~~~G~~~~KlvlGv 41 (67)
.++.+.+..|+..|++++|..+=+
T Consensus 101 ~~~~~~~a~~lA~GlDP~ks~if~ 124 (389)
T PLN02886 101 KATRSTAAIYLACGIDPSKASVFV 124 (389)
T ss_pred HHHHHHHHHHHHcCcCccceEEEE
Confidence 456677889999999999987643
No 67
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=22.91 E-value=96 Score=16.78 Aligned_cols=37 Identities=8% Similarity=0.052 Sum_probs=24.9
Q ss_pred cccHHHHHHHHHHcCCCCCceEEEeccceeeeeecCC
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNP 53 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~l~~~ 53 (67)
.-+++..++.+.+.|+...+-.--....|+.+...++
T Consensus 80 v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~ 116 (128)
T cd07249 80 VDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHP 116 (128)
T ss_pred eCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEec
Confidence 3468899999999999754433224566776666554
No 68
>PF06035 Peptidase_C93: Bacterial transglutaminase-like cysteine proteinase BTLCP; InterPro: IPR010319 Structural analysis predicts that this family of proteins are bacterial transglutaminase-like cysteine peptidases (BTLCPs) with an invariant Cys-His-Asp catalytic triad and an N-terminal signal sequence. They are predicted to possess the papain-like cysteine proteinase fold and catalyse post-translational protein modification through transamidase, acetylase or hydrolase activity. Inspection of neighbouring genes suggests a link between this predicted activity and a type-I secretion system resembling ATP-binding cassette exporters of toxins and proteases involved in bacterial pathogenicity [].; PDB: 4FGQ_B 4FGP_B 4FGO_A.
Probab=22.90 E-value=79 Score=20.11 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=15.1
Q ss_pred cHHHHHHHH---HHcCCCCCceEEEec
Q psy1033 19 NANWSVNYY---LYKGIPANKLLLGLP 42 (67)
Q Consensus 19 n~~~~v~~~---~~~G~~~~KlvlGv~ 42 (67)
.=|++|..+ +++|+|.++|.|-+-
T Consensus 80 CEDyai~K~~~L~~~G~p~~~L~ltvV 106 (170)
T PF06035_consen 80 CEDYAIAKRFALIELGVPAEALRLTVV 106 (170)
T ss_dssp HHHHHHHHHHHHHHHT--GGGEEEEEE
T ss_pred cHhHHHHHHHHHHHcCCCHHHeEEEEE
Confidence 345666554 678999999998543
No 69
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=22.72 E-value=51 Score=22.16 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=21.9
Q ss_pred HHHHHcCCCCCceE------EEeccceeeeeecCCCCC
Q psy1033 25 NYYLYKGIPANKLL------LGLPTYGHSYTLVNPDST 56 (67)
Q Consensus 25 ~~~~~~G~~~~Klv------lGv~~yGr~~~l~~~~~~ 56 (67)
...++--++..|+. +|++||+|.=-|..+.++
T Consensus 65 daaVRGslsas~v~~eLkealgm~~~~Ras~le~~~~~ 102 (256)
T COG4002 65 DAAVRGSLSASKVILELKEALGMKFYCRASILENPFTN 102 (256)
T ss_pred hHHHhcccchhhHHHHHHHhcCCCceeeeeeeecCCcC
Confidence 33444456666666 899999998777665555
No 70
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=22.66 E-value=76 Score=19.29 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=16.1
Q ss_pred cHHHHHHHHHHcCCCCCceEE
Q psy1033 19 NANWSVNYYLYKGIPANKLLL 39 (67)
Q Consensus 19 n~~~~v~~~~~~G~~~~Klvl 39 (67)
|...=+..|.+.|++++||.+
T Consensus 127 n~~~D~~~y~~~gi~~~~i~~ 147 (157)
T smart00775 127 NRITDVISYSAVGIPPSRIFT 147 (157)
T ss_pred CCchhHHHHHHcCCChhhEEE
Confidence 444558889999999988754
No 71
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=22.53 E-value=1e+02 Score=18.90 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=10.4
Q ss_pred CCCceEEEecc
Q psy1033 33 PANKLLLGLPT 43 (67)
Q Consensus 33 ~~~KlvlGv~~ 43 (67)
.++.||+|+|.
T Consensus 53 ~~~~vVVGlP~ 63 (141)
T COG0816 53 QVDTVVVGLPL 63 (141)
T ss_pred CCCEEEEecCc
Confidence 89999999998
No 72
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=22.12 E-value=88 Score=13.45 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCCCCc
Q psy1033 20 ANWSVNYYLYKGIPANK 36 (67)
Q Consensus 20 ~~~~v~~~~~~G~~~~K 36 (67)
-...|+.+++.|++.+.
T Consensus 14 ~~~~v~~Ll~~ga~~~~ 30 (33)
T PF00023_consen 14 HPDIVKLLLKHGADINA 30 (33)
T ss_dssp CHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHHCcCCCCC
Confidence 34678999999998764
No 73
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=20.88 E-value=93 Score=21.83 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCCCCceEEEe
Q psy1033 20 ANWSVNYYLYKGIPANKLLLGL 41 (67)
Q Consensus 20 ~~~~v~~~~~~G~~~~KlvlGv 41 (67)
....++-+.+.|++++|+++|-
T Consensus 178 g~eq~~il~~egvdl~~v~igH 199 (316)
T COG1735 178 GLEQLRILAEEGVDLRKVSIGH 199 (316)
T ss_pred hHHHHHHHHHcCCChhHeeEec
Confidence 4456777889999999999985
No 74
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=20.58 E-value=84 Score=20.61 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=18.5
Q ss_pred HHHHHHHHcCCCCCceEEEecccee
Q psy1033 22 WSVNYYLYKGIPANKLLLGLPTYGH 46 (67)
Q Consensus 22 ~~v~~~~~~G~~~~KlvlGv~~yGr 46 (67)
.-.+.++++=..++|+|++.|+|--
T Consensus 76 ~~sd~l~~ef~aAD~vVi~~PM~Nf 100 (202)
T COG1182 76 ARSDKLLEEFLAADKVVIAAPMYNF 100 (202)
T ss_pred HHHHHHHHHHHhcCeEEEEeccccc
Confidence 3345566666788999999999843
No 75
>PF03846 SulA: Cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, SulA binds a polymerisation-competent form of ftsZ in a 1:1 ratio, thus inhibiting ftsZ polymerisation and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. The expression of SulA is repressed by LexA. The N terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0051782 negative regulation of cell division, 0009276 Gram-negative-bacterium-type cell wall; PDB: 1OFU_X 1OFT_A.
Probab=20.55 E-value=1e+02 Score=18.59 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=9.1
Q ss_pred HHHcCCCCCceEEE
Q psy1033 27 YLYKGIPANKLLLG 40 (67)
Q Consensus 27 ~~~~G~~~~KlvlG 40 (67)
..++|++.+||++-
T Consensus 77 L~~aGl~~~kvl~l 90 (119)
T PF03846_consen 77 LQQAGLPLEKVLQL 90 (119)
T ss_dssp HHHTT--CCCEEEE
T ss_pred HHHcCCChhHeEEe
Confidence 45679999999874
No 76
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=20.03 E-value=1e+02 Score=19.59 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHcCCCCCceEEEeccceeeee
Q psy1033 17 SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYT 49 (67)
Q Consensus 17 ~~n~~~~v~~~~~~G~~~~KlvlGv~~yGr~~~ 49 (67)
..-++.-|+.+++.|+.+++|-.=+.--+..|.
T Consensus 72 d~ame~Lin~ll~~GA~r~rL~AKlfGGa~mf~ 104 (164)
T COG1871 72 DTAMELLINELLKLGASRERLEAKLFGGAQMFA 104 (164)
T ss_pred HHHHHHHHHHHHHcCCChhhheeeecccHHHHh
Confidence 344555666678889999888765554444443
Done!