RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1033
(67 letters)
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 79.4 bits (196), Expect = 1e-19
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 2 NAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMP 61
N+PLY + G SLN + +V +L KG PA+KL+LG+PTYG S+TL + T G P
Sbjct: 204 NSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAP 263
Query: 62 ASEKGP 67
A+ G
Sbjct: 264 ATGSGT 269
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 78.5 bits (194), Expect = 2e-19
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
N+PLY + D G LN + ++Y+ G + KL++G P YGH++ L +P T G
Sbjct: 203 ENSPLYKSPYDIGKSADLNVDSIISYWKDHGAASEKLIVGFPAYGHTFILSDPSKTGIGA 262
Query: 61 PASEKGP 67
P GP
Sbjct: 263 PTISTGP 269
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 77.8 bits (192), Expect = 3e-19
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 2 NAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMP 61
N+PLY TD G LN ++ +NY+ G PA KL++G PTYGH++ L NP +T G P
Sbjct: 204 NSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAP 263
Query: 62 ASEKGP 67
S GP
Sbjct: 264 TSGAGP 269
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 76.6 bits (189), Expect = 9e-19
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
N+PL D+G N ++V Y+++KG+P+ K+++G+PTYGHS+TL + T G
Sbjct: 201 HNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLASA-ETTVGA 259
Query: 61 PASEKGP 67
PAS G
Sbjct: 260 PASGPGA 266
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 76.0 bits (187), Expect = 2e-18
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 2 NAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY-GM 60
+AP+Y + LNA++ V Y+L +G P+NK+ LG+ TYG+++ L + +
Sbjct: 237 SAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPV 296
Query: 61 PASEKGP 67
GP
Sbjct: 297 VPETSGP 303
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 69.6 bits (171), Expect = 3e-16
Identities = 27/66 (40%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 2 NAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMP 61
++PL+ D + NA+++V+Y L G PANKL++G+PT+G S+TL + TD G P
Sbjct: 198 HSPLFRGNEDASS-RFSNADYAVSYMLRLGAPANKLVMGIPTFGRSFTLASS-KTDVGAP 255
Query: 62 ASEKGP 67
S G
Sbjct: 256 VSGPGI 261
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 69.2 bits (170), Expect = 3e-16
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
+A L+ V ++ + +N ++ G+P KL+LG+P YG+++ LVN +
Sbjct: 198 SHAQLFDPVNH------VSGSDGINAWIQAGVPTKKLVLGIPFYGYAWRLVNANIHGLRA 251
Query: 61 PAS 63
PA+
Sbjct: 252 PAA 254
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 69.2 bits (170), Expect = 4e-16
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
P A L+ + + ++ G+PA K +LG P YG+++ L N +S Y
Sbjct: 198 PPAALFDPSNAG-----PSGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYA 252
Query: 61 PAS 63
P +
Sbjct: 253 PTT 255
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 64.8 bits (158), Expect = 1e-14
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 2/67 (2%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
L + VN L +G+ K+++G YG +T VN +
Sbjct: 380 HQTALNAPAWKPDT--AYTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPF 437
Query: 61 PASEKGP 67
+ GP
Sbjct: 438 TGTATGP 444
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 64.4 bits (157), Expect = 3e-14
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 4/67 (5%)
Query: 1 PNAPLYPAVTDQGYF----KSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDST 56
NAPL + N +L G+PA KL+LG+P YG +
Sbjct: 259 HNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGN 318
Query: 57 DYGMPAS 63
+
Sbjct: 319 GQYQTCT 325
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 64.0 bits (156), Expect = 3e-14
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 1 PNAPLYPAVTD-QGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYG 59
A LY D + K +A+ +V YL GI +L LGL YG +T S
Sbjct: 275 HQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAKNVSP--W 332
Query: 60 MPASEKGP 67
PA++ P
Sbjct: 333 GPATDGAP 340
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 63.1 bits (154), Expect = 6e-14
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
+ ++P+ T +++ +V Y+ G+PANK++LG+P YG ++ + G
Sbjct: 216 HMSNVFPSTTKPESTP-FSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDG----IGT 270
Query: 61 PASEKGP 67
+ G
Sbjct: 271 SFNGVGG 277
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 62.8 bits (153), Expect = 9e-14
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
A +Y ++ N +++ Y G+PANK++LG+P YG S+ + G
Sbjct: 257 HQANVYNDTSNPLSTP-FNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTD----GPGK 311
Query: 61 PASEKGP 67
P + G
Sbjct: 312 PYNGVGQ 318
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 62.3 bits (152), Expect = 1e-13
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
LYP+ ++ + +V+ Y+ G+PA+K++LG+P YG ++ + G
Sbjct: 234 HQTNLYPSTSNPSSTP-FSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGTD----GPGK 288
Query: 61 PASEKGP 67
P S G
Sbjct: 289 PYSTIGE 295
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 60.5 bits (147), Expect = 5e-13
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 1 PNAPLYPAVTDQGYFKS--LNANWSVNYYLYKGIPANKLLLGLPTYGH----------SY 48
N+ LY + + +A++ VN YL G+ +++ LG+ YG +
Sbjct: 234 FNSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLKPSQMNLGIGFYGRVPKRAVEPGIDW 293
Query: 49 TLVNPDSTDYGMPASEKGP 67
T + + P
Sbjct: 294 TKADAQNNPVTQPYFGPQQ 312
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 56.8 bits (137), Expect = 1e-11
Identities = 7/63 (11%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLY-KGIPANKLLLGLPTYGHSYTLVNPDSTDYG 59
+ +Y +D + + +V + + K + + +G Y + ++
Sbjct: 369 HHTNIYRDPSDVY--SKYSIDDAVTHLIDEKKVDPKAIFIGYAGYTRNAKNATITTSIPS 426
Query: 60 MPA 62
A
Sbjct: 427 EEA 429
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 55.7 bits (134), Expect = 3e-11
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 23/90 (25%)
Query: 1 PNAPLYPAVTDQGYFKS----------------------LNANWSVNYYLY-KGIPANKL 37
A L+ ++ + L + +V +L +G+P+ K+
Sbjct: 226 HQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKI 285
Query: 38 LLGLPTYGHSYTLVNPDSTDYGMPASEKGP 67
++G+P YG ++ V+ + S G
Sbjct: 286 VMGVPFYGRAFKGVSGGNGGQYSSHSTPGE 315
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 54.5 bits (131), Expect = 7e-11
Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 16/83 (19%)
Query: 1 PNAPLYP---------------AVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYG 45
LY + + A+ + L +G+PANKL+LG YG
Sbjct: 382 HQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYG 441
Query: 46 HSYTLVNPDS-TDYGMPASEKGP 67
+ V PD+ TD P +
Sbjct: 442 RGWEGVTPDTLTDPNDPMTGTAT 464
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 49.2 bits (118), Expect = 5e-09
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 18 LNANWSVNYYLYK-GIPANKLLLGLPTYGHSYTLVNPDSTDYG 59
+ + Y+ + +K++ GLP YG+S+ + D
Sbjct: 186 DDFVKDLKYWNEQCRASKSKIVGGLPFYGYSWEESLQGAVDDV 228
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 45.6 bits (108), Expect = 8e-08
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 13 GYFKSLNANWS---VNYYLYKGIPANKLLLGLPTYGHSYTLVNPDST 56
GY+ + + + V G L + + + +L N
Sbjct: 201 GYYNNAASKYKGGNVLISFSTGPHPGGLPVDKGFFDAATSLKNKGKL 247
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 44.7 bits (106), Expect = 2e-07
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 13/56 (23%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDST 56
P AP+ ++ + + +P+ K+++G+P YG+ + + T
Sbjct: 194 PVAPIT------------EIRRTIEFTI-AQVPSRKIIIGVPLYGYDWIIPYQPGT 236
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 43.5 bits (102), Expect = 6e-07
Identities = 15/60 (25%), Positives = 17/60 (28%), Gaps = 12/60 (20%)
Query: 1 PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGM 60
PNAPL V K +K+LLGL YG Y
Sbjct: 271 PNAPLS------------WVRACVQVLDPKSKWRSKILLGLNFYGMDYATSKDAREPVVG 318
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 27.6 bits (61), Expect = 0.23
Identities = 3/26 (11%), Positives = 12/26 (46%)
Query: 20 ANWSVNYYLYKGIPANKLLLGLPTYG 45
++ + ++++++GLP
Sbjct: 233 PVGGNANNIFPALRSDQVMIGLPAAP 258
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 26.8 bits (59), Expect = 0.43
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 38 LLGLPTYGHSYTLVNPDSTDYGMPASEKGP 67
+ +P + + D +P + +G
Sbjct: 138 YVNIPVIALTDLDSPSEFVDVAIPCNNRGK 167
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 25.6 bits (56), Expect = 1.2
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 19 NANWSVNYYLYKGIPANKLLLGLPTY 44
L G+ +++ LGLP
Sbjct: 201 FLTALACIQLEGGLAPSQVGLGLPAS 226
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 25.3 bits (55), Expect = 1.7
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 23 SVNYYLYKGIPANKLLLGLPT 43
+ +G +++ GL T
Sbjct: 209 MYAAIVAQGWSPQRVVYGLLT 229
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Bacillus subtilis}
Length = 246
Score = 24.6 bits (53), Expect = 2.5
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 37 LLLGLPTYGHSYTLVNPDSTDYGMPASEKG 66
LG PT G + T + D+ P E G
Sbjct: 134 FFLGKPTIGIAKTYLKIKGCDFVTPEIEVG 163
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 24.7 bits (53), Expect = 2.6
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 38 LLGLPTYGHSYTLVNPDSTDYGMPASEKGP 67
L +PT T D G+PA+ KG
Sbjct: 143 LGNIPTIAFCDTDSPMRYVDIGIPANNKGK 172
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis}
SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A*
1kqy_A* 1kqz_A*
Length = 273
Score = 23.9 bits (51), Expect = 4.5
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 2 NAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPT 43
Y Q ++N + I A K+ LGLP
Sbjct: 179 WVQFYNNPPCQYSSGNINNIINSWNRWTTSINAGKIFLGLPA 220
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 23.9 bits (51), Expect = 5.1
Identities = 6/36 (16%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 13 GYFKSLNANWSVNYYLY---KGIPANKLLLGLPTYG 45
K ++ + + K +K+L G T
Sbjct: 194 NQQKPVSTDDAFVEIFKSLEKDYHPHKVLPGFSTDP 229
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta
hydrolase, cell adhesion, cell J glycoprotein,
membrane, postsynaptic cell membrane; HET: NAG; 1.80A
{Rattus norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A*
2wqz_A* 2xb6_A* 2vh8_A 3bl8_A*
Length = 574
Score = 23.2 bits (50), Expect = 9.7
Identities = 6/22 (27%), Positives = 9/22 (40%)
Query: 12 QGYFKSLNANWSVNYYLYKGIP 33
+G K LN + G+P
Sbjct: 21 RGIKKELNNEILGPVIQFLGVP 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.136 0.427
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,017,234
Number of extensions: 43947
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 67
Number of HSP's successfully gapped: 36
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.9 bits)