BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10330
(109 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 95.9 bits (237), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 58/70 (82%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATL 99
D DKY+FGKTKIFFR+GQVAYLEK+RA+KL+ CI IQK +R +L+RKKY+ + ++ T+
Sbjct: 738 DKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITI 797
Query: 100 QRWTRGYLAR 109
QR+ RG+ AR
Sbjct: 798 QRYVRGHQAR 807
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 48 KTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVAT--LQRWTRG 105
+ I + Q Y+ + R + ++ I +Q +R +LVR KY +L+ + +Q+ RG
Sbjct: 817 RAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRG 876
Query: 106 YLAR 109
+LAR
Sbjct: 877 WLAR 880
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 73 CIVIQKNVRCFLVRKKYLSILKSVATLQ 100
I+IQK+VR +L R Y LK++ LQ
Sbjct: 867 SIIIQKHVRGWLARVHYHRTLKAIVYLQ 894
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Query: 17 LIEKIQSIADEMETSKINIEK-DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIV 75
L+++ ++D +T K +EK D DKY+FGKTKIFFR+GQVAYLEK+RA+KL+ CI
Sbjct: 714 LMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIR 773
Query: 76 IQKNVRCFLVRKKYLSILKSVA 97
IQK +R +L+RKKY+ + + A
Sbjct: 774 IQKTIRGWLMRKKYMRMRRGDA 795
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 28/29 (96%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEK 68
D DKY+FGKTKIFFR+GQVAYLEK+RA+K
Sbjct: 738 DKDKYQFGKTKIFFRAGQVAYLEKIRADK 766
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKY 89
D ++Y+ G TK+FF++G + LE +R E+L + + Q ++R +L+RK Y
Sbjct: 751 DPNEYRLGNTKVFFKAGVLGMLEDMRDERLSKIISMFQAHIRGYLMRKAY 800
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SV 96
D +Y+ G TK+FF++G + LE++R E+L + + Q ++R +L+RK Y + +
Sbjct: 752 DPSEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 811
Query: 97 ATLQRWTRGYL 107
+ +QR R +L
Sbjct: 812 SVIQRNIRKWL 822
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SV 96
D +Y+ G TK+FF++G + LE++R E+L + + Q ++R +L+RK Y + +
Sbjct: 751 DPSEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 810
Query: 97 ATLQRWTRGYL 107
+ +QR R +L
Sbjct: 811 SVIQRNIRKWL 821
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SV 96
D +Y+ G TK+FF++G + LE++R E+L + + Q ++R +L+RK Y + +
Sbjct: 749 DPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 808
Query: 97 ATLQRWTRGYL 107
+ +QR R +L
Sbjct: 809 SVIQRNIRKWL 819
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SV 96
D +Y+ G TK+FF++G + LE++R E+L + + Q ++R +L+RK Y + +
Sbjct: 749 DPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 808
Query: 97 ATLQRWTRGYL 107
+ +QR R +L
Sbjct: 809 SVIQRNIRKWL 819
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SV 96
D +Y+ G TK+FF++G + LE++R E+L + + Q ++R +L+RK Y + +
Sbjct: 749 DPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 808
Query: 97 ATLQRWTRGYL 107
+ +QR R +L
Sbjct: 809 SVIQRNIRKWL 819
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SV 96
D +Y+ G TK+FF++G + LE++R E+L + + Q ++R +L+RK Y + +
Sbjct: 744 DPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 803
Query: 97 ATLQRWTRGYL 107
+ +QR R +L
Sbjct: 804 SVIQRNIRKWL 814
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SV 96
D +Y+ G TK+FF++G + LE++R E+L + + Q ++R +L+RK Y + +
Sbjct: 745 DPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGL 804
Query: 97 ATLQRWTRGYL 107
+ +QR R +L
Sbjct: 805 SVIQRNIRKWL 815
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 58
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 66 AEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLAR 109
A+KL+ CI IQK +R +L+RK+YL + ++ T+QR+ RGY AR
Sbjct: 1 ADKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 38 DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKY 89
D D +Y+FG TK+FF++G + LE++R +KL Q R FL+R +Y
Sbjct: 749 DVDHTQYRFGHTKVFFKAGLLGLLEEMRDDKLAEIITRTQARCRGFLMRVEY 800
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYL---SILKSV 96
D + Y+ G++KIFFR+G +A+LE+ R K+ I Q R +L RK + L ++
Sbjct: 762 DPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAM 821
Query: 97 ATLQRWTRGYL 107
+QR YL
Sbjct: 822 KVIQRNCAAYL 832
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYL---SILKSV 96
D + Y+ G++KIFFR+G +A+LE+ R K+ I Q R +L RK + L ++
Sbjct: 762 DPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAM 821
Query: 97 ATLQRWTRGYL 107
+QR YL
Sbjct: 822 KVIQRNCAAYL 832
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYL---SILKSV 96
D + Y+ G++KIFFR+G +A+LE+ R K+ I Q R +L RK + L+S+
Sbjct: 762 DPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLESI 821
Query: 97 ATLQRWTRGYL 107
+Q R ++
Sbjct: 822 FCIQYNVRSFM 832
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYL---SILKSV 96
D + Y+ G++KIFFR+G +A+LE+ R K+ I Q R +L RK + L ++
Sbjct: 762 DPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAFAKRQQQLTAM 821
Query: 97 ATLQRWTRGYL 107
+QR YL
Sbjct: 822 KVIQRNCAAYL 832
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKY 89
D + Y+ G++KIFFR+G +A+LE+ R K+ I Q R +L RK +
Sbjct: 762 DPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQAQCRGYLARKAF 811
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 38 DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSIL---K 94
D D +Y FG T +FF +G + LE++R + L Q R FL+R +Y +++ +
Sbjct: 752 DVDHTQYAFGHTXVFFXAGLLGLLEEMRDDXLAEIITATQARCRGFLMRVEYRAMVERRE 811
Query: 95 SVATLQRWTRGYL 107
S+ +Q R ++
Sbjct: 812 SIFCIQYNVRSFM 824
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 38 DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSIL---K 94
D D +Y FG T +FF +G + LE++R + L Q R FL+R +Y +++ +
Sbjct: 749 DVDHTQYAFGHTXVFFXAGLLGLLEEMRDDXLAEIITATQARCRGFLMRVEYRAMVERRE 808
Query: 95 SVATLQRWTRGYL 107
S+ +Q R ++
Sbjct: 809 SIFCIQYNVRSFM 821
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 26/34 (76%)
Query: 38 DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKR 71
D D ++YKFG TK+FF++G + LE++R E+L R
Sbjct: 750 DIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLSR 783
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKL 69
D ++Y+FG TKIFFR+GQ+A +E+ R ++L
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAREQRL 762
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLK 70
D ++Y+FG TKIFFR+GQ+A +E+ R ++L+
Sbjct: 732 DPEQYRFGITKIFFRAGQLARIEEAREQRLE 762
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLK 70
D ++Y+FG TKIFFR+GQ+A +E+ R ++L+
Sbjct: 744 DPEQYRFGITKIFFRAGQLARIEEAREQRLE 774
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLK 70
D ++Y+FG TKIFFR+GQ+A +E+ R ++L+
Sbjct: 744 DPEQYRFGITKIFFRAGQLARIEEAREQRLE 774
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 40.0 bits (92), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLK 70
D ++Y+FG TKIFFR+GQ+A +E+ R ++L+
Sbjct: 732 DPEQYRFGITKIFFRAGQLARIEEAREQRLE 762
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKL 69
D ++Y+FG TKIFFR+GQ+A +E+ R +++
Sbjct: 744 DPEQYRFGITKIFFRAGQLARIEEAREQRI 773
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKL 69
D ++Y+FG TKIFFR+GQ+A +E+ R +++
Sbjct: 744 DPEQYRFGITKIFFRAGQLARIEEAREQRI 773
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 732 DPEQYRFGITKIFFRAGQLARIEEAR 757
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAR 758
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAR 758
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAR 758
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAR 758
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAR 758
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 732 DPEQYRFGITKIFFRAGQLARIEEAR 757
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAR 758
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAR 758
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++++FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAR 758
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++++FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAR 758
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++++FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAR 758
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++++FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAR 758
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++++FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAR 758
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++++FG TKIFFR+GQ+A +E+ R
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEAR 758
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 6/44 (13%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEK------LKRCCIVIQ 77
D + Y+ G++KIFFR+G +A LE+ RA + LKR ++Q
Sbjct: 729 DPNLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQ 772
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKL 69
D + Y+ G++KIFFR+G +A+LE+ R K+
Sbjct: 762 DPNLYRIGQSKIFFRTGVLAHLEEERDLKI 791
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 758 YKFGLTKVFFRPGKFAEFDQI 778
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 758 YKFGLTKVFFRPGKFAEFDQI 778
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 748 YKFGLTKVFFRPGKFAEFDQI 768
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 749 YKFGLTKVFFRPGKFAEFDQI 769
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 723 YKFGLTKVFFRPGKFAEFDQI 743
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 745 YKFGLTKVFFRPGKFAEFDQI 765
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 746 YKFGLTKVFFRPGKFAEFDQI 766
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 748 YKFGLTKVFFRPGKFAEFDQI 768
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 722 YKFGLTKVFFRPGKFAEFDQI 742
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 748 YKFGLTKVFFRPGKFAEFDQI 768
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 722 YKFGLTKVFFRPGKFAEFDQI 742
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 44 YKFGKTKIFFRSGQVAYLEKL 64
YKFG TK+FFR G+ A +++
Sbjct: 749 YKFGLTKVFFRPGKFAEFDQI 769
>pdb|3FPG|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPG|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas
pdb|3FPH|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPH|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
L-Glutamate
pdb|3FPJ|A Chain A, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
pdb|3FPJ|B Chain B, Crystal Structure Of E81q Mutant Of Mtnas In Complex With
S- Adenosylmethionine
Length = 298
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 9 KLEGENLQLIE----KIQSIADEME----TSKINIEK-DHDCDKYKFGKTKIFFRSGQVA 59
+LEG N E + + DE+E S I+ E H D + R V
Sbjct: 16 RLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEMNHALSLIRKFYVN 75
Query: 60 YLEKLRAEKLKRCCIVIQKN-----VRCFLVRKKYLSILKSVATLQRWTRG 105
KL+ EK + VI+ + +R F +YL +LK+ A L R+ RG
Sbjct: 76 LGMKLQMEKAQE---VIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG 123
>pdb|3O31|A Chain A, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
pdb|3O31|B Chain B, E81q Mutant Of Mtnas In Complex With A Reaction
Intermediate
Length = 296
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 9 KLEGENLQLIE----KIQSIADEME----TSKINIEK-DHDCDKYKFGKTKIFFRSGQVA 59
+LEG N E + + DE+E S I+ E H D + R V
Sbjct: 15 RLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEMNHALSLIRKFYVN 74
Query: 60 YLEKLRAEKLKRCCIVIQKN-----VRCFLVRKKYLSILKSVATLQRWTRG 105
KL+ EK + VI+ + +R F +YL +LK+ A L R+ RG
Sbjct: 75 LGMKLQMEKAQE---VIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG 122
>pdb|3FPE|A Chain A, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPE|B Chain B, Crystal Structure Of Mtnas In Complex With
Thermonicotianamine
pdb|3FPF|A Chain A, Crystal Structure Of Mtnas In Complex With Mta And Tna
pdb|3FPF|B Chain B, Crystal Structure Of Mtnas In Complex With Mta And Tna
Length = 298
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 17/111 (15%)
Query: 9 KLEGENLQLIE----KIQSIADEME----TSKINIEK-DHDCDKYKFGKTKIFFRSGQVA 59
+LEG N E + + DE+E S I+ E H D + R V
Sbjct: 16 RLEGMNYHFDEMDTSGVMPLLDEIEEIAHDSTIDFESAKHILDDAEMNHALSLIRKFYVN 75
Query: 60 YLEKLRAEKLKRCCIVIQKN-----VRCFLVRKKYLSILKSVATLQRWTRG 105
KL EK + VI+ + +R F +YL +LK+ A L R+ RG
Sbjct: 76 LGMKLEMEKAQE---VIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRG 123
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 15 LQLIEKIQSIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRA 66
+QL++K+ E K + HD + +FG+ I+ + G+V EKLR
Sbjct: 185 MQLLKKLNE-----EDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231
>pdb|3PN7|A Chain A, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3PN7|D Chain D, Visualizing New Hinges And A Potential Major Source Of
Compliance In The Lever Arm Of Myosin
pdb|3TS5|A Chain A, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TS5|D Chain D, Crystal Structure Of A Light Chain Domain Of Scallop
Smooth Muscle Myosin
pdb|3TUY|A Chain A, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
pdb|3TUY|D Chain D, Phosphorylated Light Chain Domain Of Scallop Smooth
Muscle Myosin
Length = 69
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 61 LEKLRAEKLKRCCIVIQKNVRCFLVRKKY 89
LE++R E+L + + Q ++R +L+RK Y
Sbjct: 2 LEEMRDERLSKIISMFQAHIRGYLIRKAY 30
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 15 LQLIEKIQSIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRA 66
+QL++K+ E K + HD + +FG+ I+ + G+V EKLR
Sbjct: 185 MQLLKKLNE-----EDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231
>pdb|2XSX|A Chain A, Crystal Structure Of Human Beta Enolase Enob
pdb|2XSX|B Chain B, Crystal Structure Of Human Beta Enolase Enob
Length = 435
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 17 LIEKIQSIADEMETSKINIEKDHDCDKYKFGKTKIF 52
L++K S+AD+ + K IE D +K KFG I
Sbjct: 78 LLQKKLSVADQEKVDKFMIELDGTENKSKFGANAIL 113
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 39 HDCDKYKFGKTKIFFRSGQVAYLEKLRA 66
HD + +FG+ I+ + G+V EKLR
Sbjct: 204 HDINVARFGERIIYLKDGEVEREEKLRG 231
>pdb|3IW4|A Chain A, Crystal Structure Of Pkc Alpha In Complex With
Nvp-Aeb071
pdb|3IW4|B Chain B, Crystal Structure Of Pkc Alpha In Complex With
Nvp-Aeb071
pdb|3IW4|C Chain C, Crystal Structure Of Pkc Alpha In Complex With
Nvp-Aeb071
Length = 360
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 43 KYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKN-VRCFLVRKKYLSIL 93
K FGK + R G E+L A K+ + +VIQ + V C +V K+ L++L
Sbjct: 29 KGSFGKVMLADRKGT----EELYAIKILKKDVVIQDDDVECTMVEKRVLALL 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,768,115
Number of Sequences: 62578
Number of extensions: 89920
Number of successful extensions: 296
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 82
length of query: 109
length of database: 14,973,337
effective HSP length: 73
effective length of query: 36
effective length of database: 10,405,143
effective search space: 374585148
effective search space used: 374585148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)