Query psy10330
Match_columns 109
No_of_seqs 128 out of 1345
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 15:14:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 99.7 1.5E-17 3.3E-22 134.7 11.0 104 6-109 703-816 (821)
2 COG5022 Myosin heavy chain [Cy 99.5 7.5E-14 1.6E-18 116.4 11.4 103 6-108 670-783 (1463)
3 KOG0164|consensus 99.5 2.1E-13 4.5E-18 108.1 9.6 80 25-106 651-731 (1001)
4 KOG0160|consensus 99.5 2.9E-13 6.2E-18 109.6 9.4 103 5-109 606-712 (862)
5 KOG0162|consensus 99.4 9.1E-13 2E-17 104.7 9.4 72 25-96 650-722 (1106)
6 KOG0161|consensus 99.4 3.4E-12 7.3E-17 109.9 9.8 102 6-107 702-813 (1930)
7 KOG0163|consensus 98.9 1.7E-08 3.6E-13 81.3 9.3 48 19-66 723-770 (1259)
8 cd01382 MYSc_type_VI Myosin mo 98.4 4.4E-07 9.6E-12 73.6 5.2 59 6-64 652-715 (717)
9 cd01386 MYSc_type_XVIII Myosin 98.3 5E-07 1.1E-11 73.8 3.6 60 6-65 696-767 (767)
10 cd01378 MYSc_type_I Myosin mot 98.3 6.7E-07 1.4E-11 72.2 3.9 60 6-65 607-674 (674)
11 cd01383 MYSc_type_VIII Myosin 98.2 9.8E-07 2.1E-11 71.3 3.8 60 6-65 613-677 (677)
12 cd01377 MYSc_type_II Myosin mo 98.2 1.4E-06 3E-11 70.6 3.8 60 6-65 627-693 (693)
13 cd01380 MYSc_type_V Myosin mot 98.2 1.8E-06 3.8E-11 70.0 3.9 59 7-65 627-691 (691)
14 smart00242 MYSc Myosin. Large 98.1 2.3E-06 4.9E-11 69.2 4.0 42 25-66 636-677 (677)
15 cd01384 MYSc_type_XI Myosin mo 98.1 4E-06 8.7E-11 67.7 4.9 61 6-68 607-673 (674)
16 PF00612 IQ: IQ calmodulin-bin 98.1 8.2E-06 1.8E-10 37.0 3.5 20 71-90 2-21 (21)
17 cd01381 MYSc_type_VII Myosin m 97.9 1E-05 2.2E-10 65.4 3.6 60 6-65 604-671 (671)
18 cd01387 MYSc_type_XV Myosin mo 97.8 2.2E-05 4.8E-10 63.6 4.0 60 6-65 612-677 (677)
19 cd01385 MYSc_type_IX Myosin mo 97.8 3.7E-05 8.1E-10 62.4 4.9 61 6-66 626-689 (692)
20 cd01379 MYSc_type_III Myosin m 97.8 3E-05 6.5E-10 62.6 4.1 58 6-65 590-653 (653)
21 cd00124 MYSc Myosin motor doma 97.7 3.4E-05 7.4E-10 62.5 3.3 59 6-64 614-678 (679)
22 smart00015 IQ Short calmodulin 97.6 0.00013 2.9E-09 34.6 3.2 21 70-90 3-23 (26)
23 PF00612 IQ: IQ calmodulin-bin 97.4 0.00011 2.3E-09 33.2 1.6 17 93-109 1-17 (21)
24 KOG0160|consensus 97.0 0.001 2.2E-08 55.1 4.7 41 69-109 717-757 (862)
25 PF00063 Myosin_head: Myosin h 96.9 0.00051 1.1E-08 55.7 2.2 31 24-54 659-689 (689)
26 smart00015 IQ Short calmodulin 96.5 0.0015 3.3E-08 30.8 1.4 17 93-109 3-19 (26)
27 KOG0520|consensus 93.4 0.028 6.1E-07 47.3 0.5 39 71-109 811-849 (975)
28 KOG4427|consensus 91.0 0.74 1.6E-05 38.5 5.9 25 67-91 27-51 (1096)
29 KOG0164|consensus 89.9 0.94 2E-05 37.7 5.6 50 51-108 700-749 (1001)
30 PTZ00014 myosin-A; Provisional 81.0 2.8 6E-05 35.4 4.3 37 52-88 782-818 (821)
31 KOG0942|consensus 78.9 4.3 9.4E-05 34.6 4.7 25 68-92 27-51 (1001)
32 KOG0377|consensus 75.0 12 0.00025 29.9 5.8 23 70-92 17-39 (631)
33 KOG0520|consensus 72.1 3.5 7.5E-05 35.3 2.6 38 71-108 890-929 (975)
34 KOG2128|consensus 67.4 12 0.00026 33.3 4.9 39 71-109 593-638 (1401)
35 KOG0942|consensus 60.2 12 0.00027 32.0 3.6 22 88-109 24-45 (1001)
36 PF13034 DUF3895: Protein of u 58.7 9.7 0.00021 22.8 2.0 45 19-65 14-58 (78)
37 KOG2128|consensus 58.4 21 0.00046 31.9 4.7 41 69-109 564-608 (1401)
38 KOG0163|consensus 55.8 30 0.00064 29.6 5.0 30 70-99 813-842 (1259)
39 KOG4427|consensus 54.5 31 0.00067 29.4 4.9 17 93-109 30-46 (1096)
40 PF08763 Ca_chan_IQ: Voltage g 54.2 26 0.00057 17.6 2.9 17 72-88 11-27 (35)
41 KOG4229|consensus 50.5 32 0.00069 30.1 4.6 68 39-108 887-955 (1062)
42 PF15157 IQ-like: IQ-like 49.8 23 0.00049 21.7 2.7 22 69-90 46-67 (97)
43 KOG1419|consensus 47.0 19 0.0004 29.4 2.5 22 87-108 333-355 (654)
44 KOG1419|consensus 39.5 37 0.00081 27.8 3.2 18 68-85 338-355 (654)
45 COG5022 Myosin heavy chain [Cy 26.4 1.6E+02 0.0035 27.0 5.0 39 70-108 842-880 (1463)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.74 E-value=1.5e-17 Score=134.71 Aligned_cols=104 Identities=20% Similarity=0.248 Sum_probs=90.6
Q ss_pred hhhhhhhhhHHHHHHHh-------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHHHHHh---HHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ-------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKL---KRCCIV 75 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~-------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r~~~l---~~~a~~ 75 (109)
|.+....++.+....+. ..+++..|+.||..+++++++|++|+||||+|.++...||..+..++ ..+++.
T Consensus 703 p~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~ 782 (821)
T PTZ00014 703 SYRRTFAEFLSQFKYLDLAVSNDSSLDPKEKAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSV 782 (821)
T ss_pred cccccHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777766542 24789999999999999999999999999999999999988877664 478999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10330 76 IQKNVRCFLVRKKYLSILKSVATLQRWTRGYLAR 109 (109)
Q Consensus 76 IQ~~~Rg~~~Rr~~~~~r~a~~~iQ~~~R~~~aR 109 (109)
||++||||.+|++|.+.+.++++||++||+|+.+
T Consensus 783 iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 783 LEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVI 816 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999864
No 2
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.54 E-value=7.5e-14 Score=116.40 Aligned_cols=103 Identities=28% Similarity=0.399 Sum_probs=93.1
Q ss_pred hhhhhhhhhHHHHHHHhc-----------cchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHHHHHhHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQS-----------IADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCI 74 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~~-----------~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r~~~l~~~a~ 74 (109)
|++|-++|+.++..-+.. -+.+..|..||..+.++...||+|+||||+++++++.||.+|+..++.+++
T Consensus 670 P~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~ 749 (1463)
T COG5022 670 PSRWTFDEFVQRYRILSPSKSWTGEYTWKEDTKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIAT 749 (1463)
T ss_pred chhhhHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHH
Confidence 889999999888876644 246889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10330 75 VIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLA 108 (109)
Q Consensus 75 ~IQ~~~Rg~~~Rr~~~~~r~a~~~iQ~~~R~~~a 108 (109)
.||+.|||+..|++|....+.+..+|...+|+..
T Consensus 750 ~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~ 783 (1463)
T COG5022 750 RIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRL 783 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 9999999999999999998888888888877654
No 3
>KOG0164|consensus
Probab=99.48 E-value=2.1e-13 Score=108.09 Aligned_cols=80 Identities=31% Similarity=0.480 Sum_probs=72.5
Q ss_pred chHHHHHHHhhhhCCCcchhhhcceEEEEehh-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10330 25 ADEMETSKINIEKDHDCDKYKFGKTKIFFRSG-QVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWT 103 (109)
Q Consensus 25 ~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~-~~~~Le~~r~~~l~~~a~~IQ~~~Rg~~~Rr~~~~~r~a~~~iQ~~~ 103 (109)
+++++|.+|+...+.. +++++|+||||++++ .+..||+.|...+...++.||+.||||.+|.+|++++++.+.|+ +|
T Consensus 651 ~dkd~v~vL~e~~g~~-~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wy 728 (1001)
T KOG0164|consen 651 SDKDGVKVLLEHLGLA-GDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKASATIIR-WY 728 (1001)
T ss_pred CchhHHHHHHHHhccc-hhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 5788999999988765 889999999999997 58999999999999999999999999999999999998888888 66
Q ss_pred Hhh
Q psy10330 104 RGY 106 (109)
Q Consensus 104 R~~ 106 (109)
|.+
T Consensus 729 R~~ 731 (1001)
T KOG0164|consen 729 RRY 731 (1001)
T ss_pred HHH
Confidence 654
No 4
>KOG0160|consensus
Probab=99.47 E-value=2.9e-13 Score=109.63 Aligned_cols=103 Identities=32% Similarity=0.429 Sum_probs=91.8
Q ss_pred chhhhhhhhhHHHHHHHhc----cchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10330 5 AANEKLEGENLQLIEKIQS----IADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNV 80 (109)
Q Consensus 5 ~~~~~~~~~~~~~~e~~~~----~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r~~~l~~~a~~IQ~~~ 80 (109)
.|-+|...|+.+...-+.. .++...|..||..++.+ .||+|+||+|++.+..+.|+..|...+..+++.||+.+
T Consensus 606 ~P~r~~~~Ef~~r~~~L~~~~~~~~~~~~~~~il~~~~~~--~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~ 683 (862)
T KOG0160|consen 606 FPTRWTFIEFVNRYGILMPNDSASDDLSLCKVILEKLGLE--LYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQI 683 (862)
T ss_pred CCccccHHHHHHHHhhcCcchhcccchHHHHHHHHHhchh--ceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHH
Confidence 4667777777776655433 35588999999998876 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10330 81 RCFLVRKKYLSILKSVATLQRWTRGYLAR 109 (109)
Q Consensus 81 Rg~~~Rr~~~~~r~a~~~iQ~~~R~~~aR 109 (109)
|+|..|+.|..++.+++.||+.+||+++|
T Consensus 684 r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r 712 (862)
T KOG0160|consen 684 RGYLARKKFLQLRSAVIIIQAYSRGVLAR 712 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 99999999999999999999999999876
No 5
>KOG0162|consensus
Probab=99.43 E-value=9.1e-13 Score=104.75 Aligned_cols=72 Identities=26% Similarity=0.434 Sum_probs=67.6
Q ss_pred chHHHHHHHhhhhCCCcchhhhcceEEEEehh-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10330 25 ADEMETSKINIEKDHDCDKYKFGKTKIFFRSG-QVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSV 96 (109)
Q Consensus 25 ~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~-~~~~Le~~r~~~l~~~a~~IQ~~~Rg~~~Rr~~~~~r~a~ 96 (109)
|++.+|+.||.+..+++++||+|.||||++.+ .+..||+.|++.+...|.+||+.||.+.+|+.|.++|.-+
T Consensus 650 D~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~ 722 (1106)
T KOG0162|consen 650 DEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEA 722 (1106)
T ss_pred chHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999999997 6899999999999999999999999999999999987543
No 6
>KOG0161|consensus
Probab=99.37 E-value=3.4e-12 Score=109.91 Aligned_cols=102 Identities=32% Similarity=0.429 Sum_probs=91.6
Q ss_pred hhhhhhhhhHHHHHHHh-------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHHHHHhHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ-------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQK 78 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~-------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r~~~l~~~a~~IQ~ 78 (109)
||+-.+.++.+.++-.. ..+.+..|..|+..+..+...|++|.||||++.|+++.||..|+..+...++.+|+
T Consensus 702 Pnr~~~~eFrqRy~lla~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA 781 (1930)
T KOG0161|consen 702 PNRMPFQEFRQRYELLAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQA 781 (1930)
T ss_pred ccccchHHHHHhHHhhhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999888221 24568899999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q psy10330 79 NVRCFLVRKKYLSIL---KSVATLQRWTRGYL 107 (109)
Q Consensus 79 ~~Rg~~~Rr~~~~~r---~a~~~iQ~~~R~~~ 107 (109)
.+|||++|+.|.+.. .++.+||.++|.|.
T Consensus 782 ~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~ 813 (1930)
T KOG0161|consen 782 AIRGYLARKEFKKRLQQLDAIKVIQRNIRAYL 813 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998864 79999999999875
No 7
>KOG0163|consensus
Probab=98.87 E-value=1.7e-08 Score=81.30 Aligned_cols=48 Identities=25% Similarity=0.465 Sum_probs=41.7
Q ss_pred HHHhccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHHH
Q psy10330 19 EKIQSIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRA 66 (109)
Q Consensus 19 e~~~~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r~ 66 (109)
.++..++|+..|.+++..++++..+|++|.||||+++|-.....+...
T Consensus 723 pkLarLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMk 770 (1259)
T KOG0163|consen 723 PKLARLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMK 770 (1259)
T ss_pred HhhhcCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHh
Confidence 456778999999999999999999999999999999997766665543
No 8
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=98.40 E-value=4.4e-07 Score=73.64 Aligned_cols=59 Identities=22% Similarity=0.357 Sum_probs=48.3
Q ss_pred hhhhhhhhhHHHHHHHh-----ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ-----SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKL 64 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~-----~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~ 64 (109)
|.+....++.+....+- ..+++..|+.||..+++++++|++|+||||+|+++++.||+.
T Consensus 652 p~R~~f~~F~~ry~~l~~~~~~~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 652 PSRASFHELYNMYKKYMPPKLVRLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred chhhhHHHHHHHHHHhCCcccCCCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 45556666666655432 357899999999999999999999999999999999999865
No 9
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=98.31 E-value=5e-07 Score=73.77 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=47.6
Q ss_pred hhhhhhhhhHHHHHHHh------------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ------------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLR 65 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~------------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r 65 (109)
|.+....++.+....+. ..+++..|+.||..+++++++|++|+||||+|.+++..||+.|
T Consensus 696 p~R~~~~~F~~RY~~L~~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 696 PISVPLGEFVRRFGLLAEGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred cccccHHHHHHHHHhhChhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 44555555655554441 3578999999999999999999999999999999999998754
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=98.29 E-value=6.7e-07 Score=72.18 Aligned_cols=60 Identities=27% Similarity=0.310 Sum_probs=48.3
Q ss_pred hhhhhhhhhHHHHHHHh-------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehh-HHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ-------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSG-QVAYLEKLR 65 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~-------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~-~~~~Le~~r 65 (109)
|.+...+++.+....+. ..++++.|+.||..+++++++|++|+||||+|.+ +++.||..|
T Consensus 607 p~R~~~~~F~~rY~~L~~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 607 AYRQTFDKFLQRYKLLSPKTWPTWPGDAKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred CccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 55556666666665553 2478999999999999999999999999999997 799998754
No 11
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=98.24 E-value=9.8e-07 Score=71.26 Aligned_cols=60 Identities=25% Similarity=0.247 Sum_probs=47.8
Q ss_pred hhhhhhhhhHHHHHHH-----hccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKI-----QSIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLR 65 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~-----~~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r 65 (109)
|.+...+++.+....+ ...+++..|..||..+++++++|++|+||||+|.++...||..|
T Consensus 613 p~R~~~~~F~~rY~~L~~~~~~~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 613 PTRMTHQEFARRYGFLLLENIASQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred CccccHHHHHHHHHHhCccccCCCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 4555666666665544 23467888999999999999999999999999999999998754
No 12
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=98.19 E-value=1.4e-06 Score=70.57 Aligned_cols=60 Identities=35% Similarity=0.508 Sum_probs=46.9
Q ss_pred hhhhhhhhhHHHHHHHh-------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ-------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLR 65 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~-------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r 65 (109)
|.+....++.+....+. ..+++..|+.||..+++++++|++|+||||+|+++...||..|
T Consensus 627 p~R~~f~~F~~rY~~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 627 PNRILYAEFRQRYEILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred CccccHHHHHHHHHHhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 34445555555555442 2367899999999999999999999999999999999998754
No 13
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=98.17 E-value=1.8e-06 Score=69.97 Aligned_cols=59 Identities=42% Similarity=0.502 Sum_probs=45.4
Q ss_pred hhhhhhhhHHHHHHHh------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHH
Q psy10330 7 NEKLEGENLQLIEKIQ------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLR 65 (109)
Q Consensus 7 ~~~~~~~~~~~~e~~~------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r 65 (109)
.+....++.+....+- ..+++..|+.||..+..++++|++|+||||+|+++...||..|
T Consensus 627 ~R~~~~~F~~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 627 SRWTYEEFAQRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred ccccHHHHHHHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 3444444444444442 2477999999999998888999999999999999999998764
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=98.14 E-value=2.3e-06 Score=69.20 Aligned_cols=42 Identities=38% Similarity=0.572 Sum_probs=38.8
Q ss_pred chHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHHH
Q psy10330 25 ADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRA 66 (109)
Q Consensus 25 ~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r~ 66 (109)
++++.|+.||..+++++++|++|+||||+|++++..||+.|+
T Consensus 636 ~~k~~~~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 636 DAKEACEALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred CHHHHHHHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 579999999999988999999999999999999999998763
No 15
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=98.11 E-value=4e-06 Score=67.74 Aligned_cols=61 Identities=31% Similarity=0.389 Sum_probs=46.7
Q ss_pred hhhhhhhhhHHHHHHHh------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRAEK 68 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r~~~ 68 (109)
|.+....++.+....+- ..+++..|+.||..++. ++|++|+||||+|++++..||..|++.
T Consensus 607 p~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkVFlr~~~~~~LE~~R~~~ 673 (674)
T cd01384 607 PTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKILDKMGL--KGYQIGKTKVFLRAGQMAELDARRTEV 673 (674)
T ss_pred CccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHhCCC--CCEEecCeeEEEcCCHHHHHHHHHHhc
Confidence 44455555555555442 23678899999998765 579999999999999999999999764
No 16
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=98.08 E-value=8.2e-06 Score=36.96 Aligned_cols=20 Identities=40% Similarity=0.697 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10330 71 RCCIVIQKNVRCFLVRKKYL 90 (109)
Q Consensus 71 ~~a~~IQ~~~Rg~~~Rr~~~ 90 (109)
.+++.||++||||.+|+.|+
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 58899999999999999874
No 17
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=97.90 E-value=1e-05 Score=65.40 Aligned_cols=60 Identities=18% Similarity=0.125 Sum_probs=44.7
Q ss_pred hhhhhhhhhHHHHHHHh--------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ--------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLR 65 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~--------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r 65 (109)
|.+....++.+....+- ..+++..|..|+..+..++++|++|+||||+|.+....||..|
T Consensus 604 p~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 604 PIRHTFREFVERYRVLVPGVKPAYKQDCLAGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred CceecHHHHHHHHHHhCcccccccccccHHHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 33444455555544442 2356778999999988889999999999999999999998754
No 18
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=97.80 E-value=2.2e-05 Score=63.58 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=43.6
Q ss_pred hhhhhhhhhHHHHHHHhcc-----ch-HHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQSI-----AD-EMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLR 65 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~~~-----~~-~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r 65 (109)
|.+....++.+....+-.. ++ +..+..++..+++++++|++|+||||+|+++...||..|
T Consensus 612 p~r~~~~~F~~rY~~L~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 612 PVRLPFQHFIDRYRCLVALKLARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred CccccHHHHHHHHHHhCcccccCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 4555566666666655321 23 334467888888888999999999999999999998754
No 19
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=97.77 E-value=3.7e-05 Score=62.41 Aligned_cols=61 Identities=20% Similarity=0.174 Sum_probs=45.9
Q ss_pred hhhhhhhhhHHHHHHHhc---cchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQS---IADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRA 66 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~~---~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r~ 66 (109)
|.+....++.+....+-. ..++..|+.||..+++++++|++|+||||+|++....||+.-.
T Consensus 626 p~R~~~~~F~~rY~~L~~~~~~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 626 SVRYTYQDFTQQYRILLPKGAQSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred CccccHHHHHHHHHHhCcccccchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 344455555555555521 2346679999999999999999999999999999999987643
No 20
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=97.76 E-value=3e-05 Score=62.59 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=42.9
Q ss_pred hhhhhhhhhHHHHHHHh------ccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQ------SIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLR 65 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~------~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r 65 (109)
|.+....++.+....+- ..+++..|..||..++. ++|++|+||||+|.+....||..|
T Consensus 590 p~r~~~~~F~~rY~~l~~~~~~~~~~~~~~~~~il~~~~~--~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 590 SHRILFANFIRRYCFLAYRFEEEPVSSPESCALILEKAKL--DNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred CccccHHHHHHHHHHhccccccccCChHHHHHHHHHhCCC--CCEEecceEEEEecCHHHHHHhcC
Confidence 44445555555555442 13678899999998765 579999999999999999998753
No 21
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=97.68 E-value=3.4e-05 Score=62.48 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=42.9
Q ss_pred hhhhhhhhhHHHHHHHhc------cchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHH
Q psy10330 6 ANEKLEGENLQLIEKIQS------IADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKL 64 (109)
Q Consensus 6 ~~~~~~~~~~~~~e~~~~------~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~ 64 (109)
|.+...+++.+....+-. ..+...|..++..++.++++|++|+||||+|.+++..||..
T Consensus 614 p~R~~~~eF~~rY~~L~~~~~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~ 678 (679)
T cd00124 614 SVRIPFDEFLSRYRFLAPDLLEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKM 678 (679)
T ss_pred CceeeHHHHHHHHHHhCcccccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhcc
Confidence 334445555555554421 12333488999999999999999999999999999999865
No 22
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.56 E-value=0.00013 Score=34.56 Aligned_cols=21 Identities=43% Similarity=0.706 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10330 70 KRCCIVIQKNVRCFLVRKKYL 90 (109)
Q Consensus 70 ~~~a~~IQ~~~Rg~~~Rr~~~ 90 (109)
..+++.||+.||||..|+.|.
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 578999999999999999884
No 23
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=97.39 E-value=0.00011 Score=33.17 Aligned_cols=17 Identities=47% Similarity=0.724 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy10330 93 LKSVATLQRWTRGYLAR 109 (109)
Q Consensus 93 r~a~~~iQ~~~R~~~aR 109 (109)
+.+++.||+.|||+++|
T Consensus 1 ~~aai~iQ~~~R~~~~R 17 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLAR 17 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 36889999999999875
No 24
>KOG0160|consensus
Probab=97.02 E-value=0.001 Score=55.07 Aligned_cols=41 Identities=34% Similarity=0.518 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10330 69 LKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLAR 109 (109)
Q Consensus 69 l~~~a~~IQ~~~Rg~~~Rr~~~~~r~a~~~iQ~~~R~~~aR 109 (109)
...+++.||+.||++..|+.|...+.+++.+|+.+|++.+|
T Consensus 717 ~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r 757 (862)
T KOG0160|consen 717 REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLAR 757 (862)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44567777777777777777888888888888888887765
No 25
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=96.93 E-value=0.00051 Score=55.67 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=29.0
Q ss_pred cchHHHHHHHhhhhCCCcchhhhcceEEEEe
Q psy10330 24 IADEMETSKINIEKDHDCDKYKFGKTKIFFR 54 (109)
Q Consensus 24 ~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k 54 (109)
.++++.|+.||..++.+.++|++|+||||+|
T Consensus 659 ~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 659 EDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp SSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred CCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 4789999999999999999999999999996
No 26
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=96.52 E-value=0.0015 Score=30.80 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy10330 93 LKSVATLQRWTRGYLAR 109 (109)
Q Consensus 93 r~a~~~iQ~~~R~~~aR 109 (109)
..+++.||+.|||+.+|
T Consensus 3 ~~aa~~IQa~~Rg~~~r 19 (26)
T smart00015 3 TRAAIIIQAAWRGYLAR 19 (26)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56889999999999875
No 27
>KOG0520|consensus
Probab=93.35 E-value=0.028 Score=47.29 Aligned_cols=39 Identities=33% Similarity=0.497 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy10330 71 RCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLAR 109 (109)
Q Consensus 71 ~~a~~IQ~~~Rg~~~Rr~~~~~r~a~~~iQ~~~R~~~aR 109 (109)
.++..||..+++|..|+.|..++..++.||+.+||+..|
T Consensus 811 ~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r 849 (975)
T KOG0520|consen 811 AAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVR 849 (975)
T ss_pred hHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHh
Confidence 578999999999999999999999999999999998764
No 28
>KOG4427|consensus
Probab=91.00 E-value=0.74 Score=38.45 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=21.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q psy10330 67 EKLKRCCIVIQKNVRCFLVRKKYLS 91 (109)
Q Consensus 67 ~~l~~~a~~IQ~~~Rg~~~Rr~~~~ 91 (109)
++...++..||++||||.+|++|..
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~~ 51 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQI 51 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445899999999999999998873
No 29
>KOG0164|consensus
Probab=89.94 E-value=0.94 Score=37.68 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=38.2
Q ss_pred EEEehhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10330 51 IFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLA 108 (109)
Q Consensus 51 vF~k~~~~~~Le~~r~~~l~~~a~~IQ~~~Rg~~~Rr~~~~~r~a~~~iQ~~~R~~~a 108 (109)
.|++..+.+.+.+.+.+++..+++.|+ +||. -+.+..+..||..+||+..
T Consensus 700 tllQK~~RG~~~R~ry~rmka~~~ii~-wyR~-------~K~ks~v~el~~~~rg~k~ 749 (1001)
T KOG0164|consen 700 TLLQKAWRGWLARQRYRRMKASATIIR-WYRR-------YKLKSYVQELQRRFRGAKQ 749 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHhhhh
Confidence 466777889999999999888888887 7773 3456677788888888654
No 30
>PTZ00014 myosin-A; Provisional
Probab=80.99 E-value=2.8 Score=35.37 Aligned_cols=37 Identities=19% Similarity=0.176 Sum_probs=29.8
Q ss_pred EEehhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy10330 52 FFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKK 88 (109)
Q Consensus 52 F~k~~~~~~Le~~r~~~l~~~a~~IQ~~~Rg~~~Rr~ 88 (109)
.++..+.+++.+.+......++++||++||+|+.++.
T Consensus 782 ~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 782 VLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567888888777778899999999999998763
No 31
>KOG0942|consensus
Probab=78.91 E-value=4.3 Score=34.56 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10330 68 KLKRCCIVIQKNVRCFLVRKKYLSI 92 (109)
Q Consensus 68 ~l~~~a~~IQ~~~Rg~~~Rr~~~~~ 92 (109)
+..+.++.+|+.|||+..|++....
T Consensus 27 k~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 27 KQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHH
Confidence 4457899999999999999988765
No 32
>KOG0377|consensus
Probab=75.03 E-value=12 Score=29.88 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10330 70 KRCCIVIQKNVRCFLVRKKYLSI 92 (109)
Q Consensus 70 ~~~a~~IQ~~~Rg~~~Rr~~~~~ 92 (109)
-++|+.||+|+|+|.+|..-++.
T Consensus 17 ikaAilIQkWYRr~~ARle~rrr 39 (631)
T KOG0377|consen 17 IKAAILIQKWYRRYEARLEARRR 39 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999877653
No 33
>KOG0520|consensus
Probab=72.07 E-value=3.5 Score=35.31 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc
Q psy10330 71 RCCIVIQKNVRCFLVR--KKYLSILKSVATLQRWTRGYLA 108 (109)
Q Consensus 71 ~~a~~IQ~~~Rg~~~R--r~~~~~r~a~~~iQ~~~R~~~a 108 (109)
.+++.||..++-|..- .-|.++-+|++.||+.+|.+-+
T Consensus 890 ~a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a 929 (975)
T KOG0520|consen 890 TAATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKA 929 (975)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 4577777777777766 5566667788888888776544
No 34
>KOG2128|consensus
Probab=67.41 E-value=12 Score=33.32 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcC
Q psy10330 71 RCCIVIQKNVRCFLVRKKYLSI-------LKSVATLQRWTRGYLAR 109 (109)
Q Consensus 71 ~~a~~IQ~~~Rg~~~Rr~~~~~-------r~a~~~iQ~~~R~~~aR 109 (109)
+-++.+|++.||+.+|+.|.+. -.+++.||+++|++..|
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r 638 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNR 638 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccc
Confidence 4577777777777777777654 25667788888776543
No 35
>KOG0942|consensus
Probab=60.21 E-value=12 Score=31.96 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC
Q psy10330 88 KYLSILKSVATLQRWTRGYLAR 109 (109)
Q Consensus 88 ~~~~~r~a~~~iQ~~~R~~~aR 109 (109)
.-++.-++++.+|++||||.+|
T Consensus 24 e~rk~e~~av~vQs~~Rg~~~r 45 (1001)
T KOG0942|consen 24 EERKQEKNAVKVQSFWRGFRVR 45 (1001)
T ss_pred HHHHHhccchHHHHHHHHHHHH
Confidence 3344457889999999999865
No 36
>PF13034 DUF3895: Protein of unknown function (DUF3895)
Probab=58.68 E-value=9.7 Score=22.77 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=35.0
Q ss_pred HHHhccchHHHHHHHhhhhCCCcchhhhcceEEEEehhHHHHHHHHH
Q psy10330 19 EKIQSIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLR 65 (109)
Q Consensus 19 e~~~~~~~~~~~~~il~~~~~~~~~~~~G~tkvF~k~~~~~~Le~~r 65 (109)
+.-..++.++.|+-+....+.+.+.|--||.|++- .+..+|+.+.
T Consensus 14 ~n~~~Isa~elcE~LI~~~~~~~~rysTgKpkiY~--~Vc~yLe~L~ 58 (78)
T PF13034_consen 14 QNEEEISARELCEYLIENGGSPNKRYSTGKPKIYP--YVCNYLEYLV 58 (78)
T ss_pred hccccccHHHHHHHHHHcCCCccccccCCCceeHH--HHHHHHHHHH
Confidence 33467899999999999998999999999999883 4555555443
No 37
>KOG2128|consensus
Probab=58.42 E-value=21 Score=31.94 Aligned_cols=41 Identities=34% Similarity=0.272 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhcC
Q psy10330 69 LKRCCIVIQKNVRCFLV----RKKYLSILKSVATLQRWTRGYLAR 109 (109)
Q Consensus 69 l~~~a~~IQ~~~Rg~~~----Rr~~~~~r~a~~~iQ~~~R~~~aR 109 (109)
..+...-||+.|||++. ...+......++.+|+..||+++|
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsr 608 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSR 608 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 45789999999999984 222233467889999999998865
No 38
>KOG0163|consensus
Probab=55.82 E-value=30 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10330 70 KRCCIVIQKNVRCFLVRKKYLSILKSVATL 99 (109)
Q Consensus 70 ~~~a~~IQ~~~Rg~~~Rr~~~~~r~a~~~i 99 (109)
..+++.+|++.|||++|+++...-..+..+
T Consensus 813 ae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 813 AECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 467899999999999999998764444333
No 39
>KOG4427|consensus
Probab=54.49 E-value=31 Score=29.40 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhhcC
Q psy10330 93 LKSVATLQRWTRGYLAR 109 (109)
Q Consensus 93 r~a~~~iQ~~~R~~~aR 109 (109)
-+|+..||+.||||++|
T Consensus 30 ~~aa~~iq~~lrsyl~R 46 (1096)
T KOG4427|consen 30 EAAALFIQRVLRSYLVR 46 (1096)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46888999999999876
No 40
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=54.21 E-value=26 Score=17.64 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10330 72 CCIVIQKNVRCFLVRKK 88 (109)
Q Consensus 72 ~a~~IQ~~~Rg~~~Rr~ 88 (109)
++..||-+||.+..++.
T Consensus 11 At~lI~dyfr~~K~rk~ 27 (35)
T PF08763_consen 11 ATLLIQDYFRQFKKRKE 27 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57789999998887764
No 41
>KOG4229|consensus
Probab=50.46 E-value=32 Score=30.14 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=46.4
Q ss_pred CCcchhhhcceEEEEehhHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10330 39 HDCDKYKFGKTKIFFRSGQVAYLEK-LRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLA 108 (109)
Q Consensus 39 ~~~~~~~~G~tkvF~k~~~~~~Le~-~r~~~l~~~a~~IQ~~~Rg~~~Rr~~~~~r~a~~~iQ~~~R~~~a 108 (109)
.+.++++.|.+++|+...-...++. .............|++++....+..+.....+.+.+| |+.+..
T Consensus 887 ~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~ 955 (1062)
T KOG4229|consen 887 CNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLG 955 (1062)
T ss_pred cCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhc
Confidence 3678899999999997755443332 2222221136677888888888888888888888888 665543
No 42
>PF15157 IQ-like: IQ-like
Probab=49.76 E-value=23 Score=21.70 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy10330 69 LKRCCIVIQKNVRCFLVRKKYL 90 (109)
Q Consensus 69 l~~~a~~IQ~~~Rg~~~Rr~~~ 90 (109)
+...+..||+.||.|..|....
T Consensus 46 Leskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc
Confidence 4466788999999999887654
No 43
>KOG1419|consensus
Probab=47.03 E-value=19 Score=29.42 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=14.9
Q ss_pred HHHHHHH-HHHHHHHHHHHhhhc
Q psy10330 87 KKYLSIL-KSVATLQRWTRGYLA 108 (109)
Q Consensus 87 r~~~~~r-~a~~~iQ~~~R~~~a 108 (109)
++|.+.+ .|+..||+.||-|.+
T Consensus 333 KHf~rrr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 333 KHFNRRRNPAASLIQCAWRYYAA 355 (654)
T ss_pred HHHHhhcchHHHHHHHHHHHHhc
Confidence 4555544 577888888887654
No 44
>KOG1419|consensus
Probab=39.53 E-value=37 Score=27.76 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=15.0
Q ss_pred HhHHHHHHHHHHHHHHHH
Q psy10330 68 KLKRCCIVIQKNVRCFLV 85 (109)
Q Consensus 68 ~l~~~a~~IQ~~~Rg~~~ 85 (109)
+.+++|..||.+||.|.+
T Consensus 338 rr~pAA~LIQc~WR~yaa 355 (654)
T KOG1419|consen 338 RRNPAASLIQCAWRYYAA 355 (654)
T ss_pred hcchHHHHHHHHHHHHhc
Confidence 345899999999998875
No 45
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=26.36 E-value=1.6e+02 Score=26.95 Aligned_cols=39 Identities=28% Similarity=0.260 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy10330 70 KRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLA 108 (109)
Q Consensus 70 ~~~a~~IQ~~~Rg~~~Rr~~~~~r~a~~~iQ~~~R~~~a 108 (109)
..+.+.+|+.||.+..+++|..+....+.+|+.+|.-.|
T Consensus 842 ~~~~~L~~~~~rs~~~~kr~~~L~k~~i~~~~~~r~~~a 880 (1463)
T COG5022 842 LKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELA 880 (1463)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHH
Confidence 367889999999999999999998888889988886544
Done!