RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10330
(109 letters)
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 101 bits (253), Expect = 1e-26
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 22 QSIADEMETSKINIEK-DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNV 80
Q D S+ + D +Y+ G TK+FF++G + LE++R E+L + + Q ++
Sbjct: 730 QGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHI 789
Query: 81 RCFLVRKKYLSILK---SVATLQRWTRGYLAR 109
R +L+RK Y + ++ +QR R +L
Sbjct: 790 RGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL 821
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 97.9 bits (244), Expect = 2e-25
Identities = 43/70 (61%), Positives = 58/70 (82%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATL 99
D DKY+FGKTKIFFR+GQVAYLEK+RA+KL+ CI IQK +R +L+RKKY+ + ++ T+
Sbjct: 738 DKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWLMRKKYMRMRRAAITI 797
Query: 100 QRWTRGYLAR 109
QR+ RG+ AR
Sbjct: 798 QRYVRGHQAR 807
Score = 35.5 bits (82), Expect = 0.002
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 63 KLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLAR 109
K + + I+IQK+VR +L R Y LK++ LQ R +A+
Sbjct: 857 KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 87.0 bits (216), Expect = 2e-21
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKN--VRCFLVRKKYLSILK--- 94
D + Y+ G++KIFFR+G +A LE+ RA + + + + N V+ ++ L
Sbjct: 729 DPNLYRVGQSKIFFRAGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGD 788
Query: 95 SVATLQRWTRGYLAR 109
S+ ++Q + +
Sbjct: 789 SIESVQSFMNAHKEY 803
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 86.5 bits (215), Expect = 2e-21
Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 26 DEMETSKINIEK-DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFL 84
D +T K +EK D DKY+FGKTKIFFR+GQVAYLEK+RA+KL+ CI IQK +R +L
Sbjct: 723 DRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIRIQKTIRGWL 782
Query: 85 VRKKYLSILKSVA 97
+RKKY+ + + A
Sbjct: 783 MRKKYMRMRRGDA 795
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 83.0 bits (205), Expect = 3e-20
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 19 EKIQSIADEMETSKINIEK-DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQ 77
+ D + + I+ + D + Y+ G++KIFFR+G +A+LE+ R K+ I Q
Sbjct: 740 AIPKGFMDGKQACILMIKALELDPNLYRIGQSKIFFRTGVLAHLEEERDLKITDVIIAFQ 799
Query: 78 KNVRCFLVRKKYLSILK---SVATLQRWTRGYLAR 109
R +L RK + + S+ +Q R ++
Sbjct: 800 AQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNV 834
Score = 25.6 bits (56), Expect = 4.5
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 2 ELIAANEKLEGENLQLIEKIQSIADEMETSKINIEK 37
E AA +KL+ E + KI+ + D++ + K
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 80.9 bits (200), Expect = 2e-19
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRK---------KYL 90
D ++Y+FG TKIFFR+GQ+A +E+ R ++L R + + +
Sbjct: 733 DPEQYRFGITKIFFRAGQLARIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESR 792
Query: 91 SILKSVATLQRWTRGYLAR 109
S+ ++Q + +
Sbjct: 793 DFGDSIESVQSFMNAHKEY 811
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 66.1 bits (162), Expect = 3e-14
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFL 84
+ YKFG TK+FFR G+ A +++ ++++ V +L
Sbjct: 741 NEIDYKFGLTKVFFRPGKFAEFDQIMKSDPDHLAELVKR-VNHWL 784
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL
conjugation, Ca2+ regulation, myosin, calcium, IQ motif,
acetylation; 2.5A {Mus musculus}
Length = 58
Score = 61.0 bits (149), Expect = 3e-14
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 66 AEKLKRCCIVIQKNVRCFLVRKKYLSILKSVATLQRWTRGYLAR 109
A+KL+ CI IQK +R +L+RK+YL + ++ T+QR+ RGY AR
Sbjct: 1 ADKLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44
Score = 29.1 bits (66), Expect = 0.054
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 59 AYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSVA 97
+L + R ++R I +Q+ VR + R + ++ A
Sbjct: 17 GWLLRKRYLCMQRAAITVQRYVRGYQARCYAKFLRRTKA 55
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 61.5 bits (150), Expect = 1e-12
Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 25 ADEMETSKINIEK-DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKR 71
D + ++ + D D ++YKFG TK+FF++G + LE++R E+L R
Sbjct: 736 IDSRKGAEKLLSSLDIDHNQYKFGHTKVFFKAGLLGLLEEMRDERLSR 783
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 51.9 bits (125), Expect = 3e-09
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKR 71
D ++++FG TKIFFR+GQ+A +E+ R +
Sbjct: 733 DPEQFRFGITKIFFRAGQLARIEEARELRGDY 764
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 51.4 bits (124), Expect = 4e-09
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 40 DCDKYKFGKTKIFFRS-GQVAYLEKLRAEKL 69
D ++ + GKTK+F R+ + Y E+ R ++
Sbjct: 666 DKEEIRMGKTKVFIRNPTTLFYFEEKRELEM 696
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.10
Identities = 6/39 (15%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 5 AANEKLEGE------NLQLIEKIQSIADEMETSKINIEK 37
N +E + +L+ ++ + ++ + ++ KI+I +
Sbjct: 1843 IVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A
3tuy_A* 1scm_A
Length = 64
Score = 27.1 bits (60), Expect = 0.36
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 65 RAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SVATLQRWTRGYLAR 109
R E+L + + Q ++R +L+RK Y + ++ +QR R +L
Sbjct: 1 RDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL 48
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 63
Score = 26.6 bits (59), Expect = 0.55
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 67 EKLKRCCIVIQKNVRCFLVRKKYLSILK---SVATLQRWTRGYLAR 109
++ V+Q R ++ RK + + S +Q R YL
Sbjct: 1 RRIGEIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEF 46
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 3.2
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 13/36 (36%)
Query: 8 EKLEGENLQLIEKIQS-----IADEMETSKIN--IE 36
EK Q ++K+Q+ D I +E
Sbjct: 18 EK------QALKKLQASLKLYADDSAPALAIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 5.8
Identities = 15/87 (17%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 17 LIEKIQSIADE-METSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIV 75
L+ K + + + +E + + YKF + I Q + + ++ E+ R
Sbjct: 71 LLSKQEEMVQKFVEEV---LRIN-----YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 76 IQKNVRCFLVR-KKYLSILKSVATLQR 101
Q + + R + YL + +++ L+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRP 149
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal
recognition particle, SRP-GTPase, protein targeting,
cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus
furiosus}
Length = 443
Score = 24.8 bits (55), Expect = 6.2
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 15 LQLIEKIQSIADEMETSKINIEK 37
L+EK + + E+E + +IE+
Sbjct: 300 QGLLEKFKELEKEVEIKEEDIER 322
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.388
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,571,499
Number of extensions: 78519
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 30
Length of query: 109
Length of database: 6,701,793
Length adjustment: 73
Effective length of query: 36
Effective length of database: 4,663,560
Effective search space: 167888160
Effective search space used: 167888160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.4 bits)