RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10330
(109 letters)
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 88.2 bits (218), Expect = 2e-22
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 16 QLIEKIQSIADEMETSKINIEKDHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIV 75
I + Q + + + K+ D D +Y FG TK+FF++G + LE++R +KL
Sbjct: 681 SAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKAGLLGLLEEMRDDKLAEIITA 740
Query: 76 IQKNVRCFLVRKKYLSIL---KSVATLQRWTRGYLAR 109
Q R FL+R +Y +++ +S+ +Q R ++
Sbjct: 741 TQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNV 777
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 84.8 bits (209), Expect = 3e-21
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 42 DKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILK---SVAT 98
+Y+ G TK+FF++G + LE++R E+L + + Q ++R +L+RK Y + ++
Sbjct: 703 AEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSV 762
Query: 99 LQRWTRGYLAR 109
+QR R +L
Sbjct: 763 IQRNIRKWLVL 773
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 75.2 bits (184), Expect = 6e-18
Identities = 42/77 (54%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Query: 17 LIEKIQSIADEMETSKINIEK-DHDCDKYKFGKTKIFFRSGQVAYLEKLRAEKLKRCCIV 75
L+++ ++D +T K +EK D DKY+FGKTKIFFR+GQVAYLEK+RA+KL+ CI
Sbjct: 652 LMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKIFFRAGQVAYLEKIRADKLRAACIR 711
Query: 76 IQKNVRCFLVRKKYLSI 92
IQK +R +L+RKKY+ +
Sbjct: 712 IQKTIRGWLMRKKYMRM 728
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 45.1 bits (106), Expect = 2e-07
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D + Y+ G++KIFFR+G +A+LE+ R
Sbjct: 684 DPNLYRIGQSKIFFRTGVLAHLEEER 709
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 44.7 bits (105), Expect = 3e-07
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 40 DCDKYKFGKTKIFFRSGQVAYLEKLR 65
D ++Y+FG TKIFFR+GQ+A +E+ R
Sbjct: 686 DPEQYRFGITKIFFRAGQLARIEEAR 711
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 40.8 bits (95), Expect = 8e-06
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 26 DEMETSKINIEKDHDCDKYKFGKTKIFFRS-GQVAYLEKLR 65
+ T I + + D ++ + GKTK+F R+ + Y E+ R
Sbjct: 644 AKQATELILQQHNIDKEEIRMGKTKVFIRNPTTLFYFEEKR 684
>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
[TaxId: 2336]}
Length = 364
Score = 27.7 bits (60), Expect = 0.26
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 49 TKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNVRCFLVRKKYLSILKSV 96
+ +G + LE+ + +R +VI V ++ + + S V
Sbjct: 10 GRYVQGAGAINILEEELSRFGERAFVVIDDFVDKNVLGENFFSSFTKV 57
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537
{Pyrococcus furiosus [TaxId: 2261]}
Length = 447
Score = 27.2 bits (60), Expect = 0.47
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 12/81 (14%)
Query: 21 IQSIADEMETSKINIEKDHDCDKYKFGKTK----IFFRSGQV------AYLEKLRAEKLK 70
I E ++ D K K + R G++ ++
Sbjct: 267 IGEQRGESVDMNEFFKEMVDKFKEFNIKLDNKKILLLRDGRITNNEEEGLKYISEMFDIE 326
Query: 71 RCCIVIQK--NVRCFLVRKKY 89
+ + K VR F K Y
Sbjct: 327 VVTMDVIKNHPVRAFANMKMY 347
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga
maritima [TaxId: 2336]}
Length = 359
Score = 24.6 bits (52), Expect = 3.1
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 49 TKIFFRSGQVAYLEKLRAEKLKRCCIVIQKNV 80
T +FF + + KR +V K+
Sbjct: 8 TDVFFGEKILEKRGNIIDLLGKRALVVTGKSS 39
>d1qd1a1 d.58.34.1 (A:2-180) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 179
Score = 24.0 bits (52), Expect = 4.2
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 11 EGENLQLIEKIQSIADEMETSKI-NIEKDHD 40
EG+N ++I+ I + + +++
Sbjct: 12 EGKNQEVIDAISRAVAQTPGCVLLDVDSGPS 42
>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein) {Human
(Homo sapiens), isoform I [TaxId: 9606]}
Length = 139
Score = 23.4 bits (50), Expect = 5.9
Identities = 7/84 (8%), Positives = 20/84 (23%), Gaps = 7/84 (8%)
Query: 5 AANEKLEGENLQLIEKIQSIADE---METSKINIEKDHDCDKYKFGKTKIFFRSGQVAYL 61
AA N+ E + + + + + K + + L
Sbjct: 32 AAVPGKTFVNITPAEVGVLVGKDRSSFYVNGLTLG----GQKCSVIRDSLLQDGEFSMDL 87
Query: 62 EKLRAEKLKRCCIVIQKNVRCFLV 85
+ + K + ++
Sbjct: 88 RTKSTGGAPTFNVTVTKTDKTLVL 111
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545,
C-terminal domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 73
Score = 22.4 bits (48), Expect = 8.1
Identities = 6/21 (28%), Positives = 16/21 (76%)
Query: 83 FLVRKKYLSILKSVATLQRWT 103
+ RK+YL+I+++++ +W+
Sbjct: 2 EIARKRYLNIMRTLSKCGKWS 22
>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human
(Homo sapiens), isoform II [TaxId: 9606]}
Length = 138
Score = 23.0 bits (49), Expect = 9.4
Identities = 7/84 (8%), Positives = 24/84 (28%), Gaps = 7/84 (8%)
Query: 5 AANEKLEGENLQLIEKIQSIADE---METSKINIEKDHDCDKYKFGKTKIFFRSGQVAYL 61
AA +++ IE + + T+ + + K + ++ +
Sbjct: 32 AATAGGVFQSITPIEIDMIVGKDREGFFTNGLTLG----AKKCSVIRDSLYVDGDCTMDI 87
Query: 62 EKLRAEKLKRCCIVIQKNVRCFLV 85
+ + + R ++
Sbjct: 88 RTKSQGGEPTYNVAVGRAGRALVI 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.136 0.388
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 390,053
Number of extensions: 16236
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 19
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)